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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for hoxd9a

Z-value: 0.52

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Transcription factors associated with hoxd9a

Gene Symbol Gene ID Gene Info
hoxd9a
ENSDARG00000059274 homeobox D9a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxd9adr11_v1_chr9_-_1965727_19657270.561.5e-02Click!

Activity profile of hoxd9a motif

Sorted Z-values of hoxd9a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr4_-_20081621 0.82 ENSDART00000024647
dennd6b
DENN/MADD domain containing 6B
chr3_+_37083765 0.79 ENSDART00000125611
retreg3
reticulophagy regulator family member 3
chr7_+_28724919 0.78 ENSDART00000011324
ccdc102a
coiled-coil domain containing 102A
chr25_+_418932 0.75 ENSDART00000059193
prtgb
protogenin homolog b (Gallus gallus)
chr22_-_18241390 0.73 ENSDART00000083879
tmem161a
transmembrane protein 161A
chr22_+_15959844 0.71 ENSDART00000182201
stil
scl/tal1 interrupting locus
chr14_-_16082806 0.69 ENSDART00000165656
mxd3
MAX dimerization protein 3
chr21_-_42831033 0.69 ENSDART00000160998
stk10
serine/threonine kinase 10
chr16_-_47427016 0.67 ENSDART00000074575
sept7b
septin 7b
chr23_+_2666944 0.67 ENSDART00000192861
CABZ01057928.1

chr24_-_3477103 0.66 ENSDART00000143723
idi1
isopentenyl-diphosphate delta isomerase 1
chr12_+_24952902 0.63 ENSDART00000189086
ENSDART00000014868
calm3a
calmodulin 3a (phosphorylase kinase, delta)
chr24_-_21090447 0.61 ENSDART00000136507
ENSDART00000140786
ENSDART00000184841
qtrt2
queuine tRNA-ribosyltransferase accessory subunit 2
chr8_-_39884359 0.55 ENSDART00000131372
mlec
malectin
chr5_+_43006422 0.54 ENSDART00000009182
aqp3a
aquaporin 3a
chr13_+_7578111 0.53 ENSDART00000175431
gbf1
golgi brefeldin A resistant guanine nucleotide exchange factor 1
chr3_+_35005062 0.52 ENSDART00000181163
prkcbb
protein kinase C, beta b
chr10_+_16911951 0.52 ENSDART00000164933
UNC13B (1 of many)
unc-13 homolog B
chr14_+_46342882 0.51 ENSDART00000193707
ENSDART00000060577
tmem33
transmembrane protein 33
chr9_+_22780901 0.51 ENSDART00000110992
ENSDART00000143972
rif1
replication timing regulatory factor 1
chr2_+_30739680 0.50 ENSDART00000101861
tcea1
transcription elongation factor A (SII), 1
chr1_-_338445 0.50 ENSDART00000010092
gas6
growth arrest-specific 6
chr11_+_11303458 0.48 ENSDART00000162486
ENSDART00000160703
si:dkey-23f9.4
si:dkey-23f9.4
chr25_+_3099073 0.47 ENSDART00000022506
rab3il1
RAB3A interacting protein (rabin3)-like 1
chr5_-_29514689 0.45 ENSDART00000126018
ENSDART00000125175
ehmt1a
euchromatic histone-lysine N-methyltransferase 1a
chr16_+_54209504 0.45 ENSDART00000020033
xrcc1
X-ray repair complementing defective repair in Chinese hamster cells 1
chr20_-_51831657 0.45 ENSDART00000165076
mia3
melanoma inhibitory activity family, member 3
chr16_-_17347727 0.45 ENSDART00000144392
zyx
zyxin
chr14_-_46617228 0.45 ENSDART00000161010
ENSDART00000171054
prom1a
prominin 1a
chr22_+_15960005 0.45 ENSDART00000033617
stil
scl/tal1 interrupting locus
chr6_-_29051773 0.44 ENSDART00000190508
ENSDART00000180191
ENSDART00000111682
evi5b
ecotropic viral integration site 5b
chr21_+_3166519 0.44 ENSDART00000160585
hnrnpabb
heterogeneous nuclear ribonucleoprotein A/Bb
chr25_+_19870603 0.43 ENSDART00000047251
gramd4b
GRAM domain containing 4b
chr9_-_12269847 0.41 ENSDART00000136558
ENSDART00000144734
ENSDART00000131766
ENSDART00000032344
nup35
nucleoporin 35
chr19_-_4137087 0.41 ENSDART00000164611
rragcb
Ras-related GTP binding Cb
chr3_-_46403778 0.41 ENSDART00000074422
cdip1
cell death-inducing p53 target 1
chr19_+_1510971 0.41 ENSDART00000157721
SLC45A4 (1 of many)
solute carrier family 45 member 4
chr15_-_37589600 0.41 ENSDART00000154641
proser3
proline and serine rich 3
chr14_+_26224731 0.41 ENSDART00000168673
gm2a
GM2 ganglioside activator
chr16_-_17586883 0.40 ENSDART00000017142
m6pr
mannose-6-phosphate receptor (cation dependent)
chr2_-_57837838 0.39 ENSDART00000010699
sf3a2
splicing factor 3a, subunit 2
chr16_+_13883872 0.39 ENSDART00000101304
ENSDART00000136005
atg12
ATG12 autophagy related 12 homolog (S. cerevisiae)
chr6_-_2134581 0.38 ENSDART00000175478
vstm2l
V-set and transmembrane domain containing 2 like
chr24_+_3478871 0.38 ENSDART00000111491
ENSDART00000134598
ENSDART00000142407
wdr37
WD repeat domain 37
chr13_-_42757565 0.38 ENSDART00000161950
capn2a
calpain 2, (m/II) large subunit a
chr23_-_14990865 0.38 ENSDART00000147799
ndrg3b
ndrg family member 3b
chr21_+_45717930 0.38 ENSDART00000164315
ddx46
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
chr4_-_14954029 0.38 ENSDART00000038642
slc26a5
solute carrier family 26 (anion exchanger), member 5
chr4_-_14954327 0.37 ENSDART00000182729
slc26a5
solute carrier family 26 (anion exchanger), member 5
chr23_+_4483083 0.37 ENSDART00000092389
nup210
nucleoporin 210
chr2_-_985417 0.37 ENSDART00000140540
si:ch211-241e1.3
si:ch211-241e1.3
chr3_+_43774369 0.36 ENSDART00000157964
zc3h7a
zinc finger CCCH-type containing 7A
chr3_+_39579393 0.36 ENSDART00000055170
cln3
ceroid-lipofuscinosis, neuronal 3
chr9_+_21259820 0.36 ENSDART00000137024
ENSDART00000132324
ska3
spindle and kinetochore associated complex subunit 3
chr12_-_20616160 0.36 ENSDART00000105362
snx11
sorting nexin 11
chr10_-_10969444 0.36 ENSDART00000138041
exd3
exonuclease 3'-5' domain containing 3
chr3_+_19248973 0.36 ENSDART00000174668
smarca4a
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a
chr21_+_43172506 0.36 ENSDART00000121725
zcchc10
zinc finger, CCHC domain containing 10
chr15_-_1844048 0.36 ENSDART00000102410
taf15
TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor
chr6_-_58901552 0.35 ENSDART00000122003
mbd6
methyl-CpG binding domain protein 6
chr6_+_21001264 0.35 ENSDART00000044519
ENSDART00000151278
cx44.2
connexin 44.2
chr16_-_28658341 0.35 ENSDART00000148456
abcb4
ATP-binding cassette, sub-family B (MDR/TAP), member 4
chr16_-_44945224 0.35 ENSDART00000156921
ncam3
neural cell adhesion molecule 3
chr8_+_12951155 0.35 ENSDART00000081601
cept1a
choline/ethanolamine phosphotransferase 1a
chr10_+_44903676 0.35 ENSDART00000158553
zgc:114173
zgc:114173
chr11_-_12802123 0.34 ENSDART00000104143
txlng
taxilin gamma
chr22_-_17671348 0.34 ENSDART00000137995
tjp3
tight junction protein 3
chr4_-_1776352 0.33 ENSDART00000123089
dnajc2
DnaJ (Hsp40) homolog, subfamily C, member 2
chr24_-_35699595 0.33 ENSDART00000167990
mapre2
microtubule-associated protein, RP/EB family, member 2
chr14_+_28492990 0.33 ENSDART00000160347
ENSDART00000187176
ENSDART00000088094
stag2b
stromal antigen 2b
chr7_+_9189547 0.33 ENSDART00000169783
pcsk6
proprotein convertase subtilisin/kexin type 6
chr13_+_18471546 0.33 ENSDART00000090712
ENSDART00000127962
stox1
storkhead box 1
chr4_+_11695979 0.32 ENSDART00000137736
mkln1
muskelin 1, intracellular mediator containing kelch motifs
chr10_+_23060391 0.32 ENSDART00000079711
slc25a1a
solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1a
chr6_-_8377055 0.32 ENSDART00000131513
ilf3a
interleukin enhancer binding factor 3a
chr18_-_3542435 0.31 ENSDART00000184017
dcun1d5
DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)
chr22_+_1947494 0.31 ENSDART00000159121
si:dkey-15h8.15
si:dkey-15h8.15
chr20_+_53368611 0.31 ENSDART00000060432
cdc40
cell division cycle 40 homolog (S. cerevisiae)
chr9_+_38883388 0.31 ENSDART00000135902
map2
microtubule-associated protein 2
chr16_-_10223741 0.31 ENSDART00000188099
si:rp71-15i12.1
si:rp71-15i12.1
chr24_+_34970680 0.31 ENSDART00000113014
rb1cc1
RB1-inducible coiled-coil 1
chr6_-_19333947 0.30 ENSDART00000160887
gga3
ggolgi-associated, gamma adaptin ear containing, ARF binding protein 3
chr19_-_31042570 0.30 ENSDART00000144337
ENSDART00000136213
ENSDART00000133101
ENSDART00000190949
bzw2
basic leucine zipper and W2 domains 2
chr15_+_24795473 0.30 ENSDART00000139689
ENSDART00000141033
ENSDART00000100746
ENSDART00000135677
gosr1
golgi SNAP receptor complex member 1
chr4_-_12978925 0.30 ENSDART00000013839
tmbim4
transmembrane BAX inhibitor motif containing 4
chr11_-_44979281 0.30 ENSDART00000190972
ldb1b
LIM-domain binding 1b
chr9_-_25366541 0.30 ENSDART00000021672
epc2
enhancer of polycomb homolog 2 (Drosophila)
chr11_-_25461336 0.29 ENSDART00000014945
hcfc1a
host cell factor C1a
chr21_-_22117085 0.29 ENSDART00000146673
slc35f2
solute carrier family 35, member F2
chr17_-_1174960 0.29 ENSDART00000161202
dnajc17
DnaJ (Hsp40) homolog, subfamily C, member 17
chr8_+_21133307 0.29 ENSDART00000056405
magoh
mago homolog, exon junction complex core component
chr13_+_15580758 0.29 ENSDART00000087194
ENSDART00000013525
mark3a
MAP/microtubule affinity-regulating kinase 3a
chr15_-_25435085 0.29 ENSDART00000112079
tlcd2
TLC domain containing 2
chr22_+_34784075 0.29 ENSDART00000167538
lcor
ligand dependent nuclear receptor corepressor
chr13_-_24260609 0.29 ENSDART00000138747
urb2
URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
chr13_+_35689749 0.29 ENSDART00000158726
psme4a
proteasome activator subunit 4a
chr22_-_11661724 0.29 ENSDART00000025198
mettl21a
methyltransferase like 21A
chr2_-_10877765 0.29 ENSDART00000100607
cdc7
cell division cycle 7 homolog (S. cerevisiae)
chr16_-_47426482 0.28 ENSDART00000148631
ENSDART00000149723
sept7b
septin 7b
chr10_-_10969596 0.28 ENSDART00000092011
exd3
exonuclease 3'-5' domain containing 3
chr6_-_8392104 0.28 ENSDART00000081561
ENSDART00000181178
ilf3a
interleukin enhancer binding factor 3a
chr2_+_23081402 0.28 ENSDART00000183073
mfsd12a
major facilitator superfamily domain containing 12a
chr3_+_13848226 0.27 ENSDART00000184342
ilf3b
interleukin enhancer binding factor 3b
chr13_+_35690023 0.27 ENSDART00000128865
ENSDART00000130050
psme4a
proteasome activator subunit 4a
chr16_-_42461263 0.27 ENSDART00000109259
smarcc1a
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a
chr13_+_48359573 0.27 ENSDART00000161959
ENSDART00000165311
msh6
mutS homolog 6 (E. coli)
chr15_-_26930999 0.27 ENSDART00000181674
ENSDART00000126046
ccdc9
coiled-coil domain containing 9
chr19_-_6083761 0.26 ENSDART00000151185
ENSDART00000143941
gsk3aa
glycogen synthase kinase 3 alpha a
chr6_-_57539141 0.26 ENSDART00000156967
itcha
itchy E3 ubiquitin protein ligase a
chr14_+_23593989 0.26 ENSDART00000163682
med12
mediator complex subunit 12
chr24_+_17068724 0.26 ENSDART00000191137
pip4k2aa
phosphatidylinositol-5-phosphate 4-kinase, type II, alpha a
chr15_-_14193926 0.26 ENSDART00000162707
pnkp
polynucleotide kinase 3'-phosphatase
chr2_-_9915814 0.26 ENSDART00000091644
ENSDART00000177556
abi1b
abl-interactor 1b
chr24_-_15208414 0.25 ENSDART00000145978
rttn
rotatin
chr12_+_19199735 0.25 ENSDART00000066393
pdap1a
pdgfa associated protein 1a
chr1_-_69444 0.25 ENSDART00000166954
si:zfos-1011f11.1
si:zfos-1011f11.1
chr23_+_36460239 0.25 ENSDART00000172441
lima1a
LIM domain and actin binding 1a
chr11_+_45388126 0.24 ENSDART00000167826
ENSDART00000171274
srsf11
serine/arginine-rich splicing factor 11
chr16_-_31505802 0.24 ENSDART00000147616
si:ch211-251p5.5
si:ch211-251p5.5
chr24_-_37326236 0.24 ENSDART00000003789
pdpk1b
3-phosphoinositide dependent protein kinase 1b
chr3_-_32873641 0.24 ENSDART00000075277
zgc:113090
zgc:113090
chr16_+_26706519 0.24 ENSDART00000142706
virma
vir like m6A methyltransferase associated
chr19_-_37508571 0.24 ENSDART00000018255
ilf2
interleukin enhancer binding factor 2
chr22_+_12595144 0.24 ENSDART00000140054
ENSDART00000060979
ENSDART00000139826
zgc:92335
zgc:92335
chr20_+_29565906 0.24 ENSDART00000062383
ywhaqa
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide a
chr3_-_31115996 0.24 ENSDART00000058955
arl6ip1
ADP-ribosylation factor-like 6 interacting protein 1
chr5_+_41477526 0.24 ENSDART00000153567
pias2
protein inhibitor of activated STAT, 2
chr9_-_14683574 0.23 ENSDART00000144022
pard3bb
par-3 family cell polarity regulator beta b
chr23_-_7052362 0.23 ENSDART00000127702
ENSDART00000192468
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)
chr19_+_42061699 0.23 ENSDART00000125579
si:ch211-13c6.2
si:ch211-13c6.2
chr3_+_47131112 0.23 ENSDART00000165100
dnm2a
dynamin 2a
chr21_+_21195487 0.22 ENSDART00000181746
ENSDART00000184832
rictorb
RPTOR independent companion of MTOR, complex 2b
chr7_-_58098814 0.22 ENSDART00000147287
ENSDART00000043984
ank2b
ankyrin 2b, neuronal
chr6_-_40922971 0.22 ENSDART00000155363
sfi1
SFI1 centrin binding protein
chr23_-_36446307 0.22 ENSDART00000136623
zgc:174906
zgc:174906
chr4_+_5317483 0.22 ENSDART00000150366
si:ch211-214j24.10
si:ch211-214j24.10
chr18_-_16907436 0.22 ENSDART00000146464
swap70b
switching B cell complex subunit SWAP70b
chr13_-_36535128 0.22 ENSDART00000043312
srsf5a
serine/arginine-rich splicing factor 5a
chr16_-_25663846 0.21 ENSDART00000031304
derl1
derlin 1
chr3_-_31115601 0.21 ENSDART00000139090
arl6ip1
ADP-ribosylation factor-like 6 interacting protein 1
chr6_-_7776612 0.21 ENSDART00000190269
myh9a
myosin, heavy chain 9a, non-muscle
chr2_-_40889465 0.21 ENSDART00000192631
ENSDART00000180824
uggt1
UDP-glucose glycoprotein glucosyltransferase 1
chr3_+_32933663 0.20 ENSDART00000112742
nbr1b
neighbor of brca1 gene 1b
chr8_+_3820134 0.20 ENSDART00000122454
citb
citron rho-interacting serine/threonine kinase b
chr25_+_15273370 0.20 ENSDART00000045659
tcp11l1
t-complex 11, testis-specific-like 1
chr2_-_54387550 0.19 ENSDART00000097388
napgb
N-ethylmaleimide-sensitive factor attachment protein, gamma b
chr13_-_24257631 0.19 ENSDART00000146524
urb2
URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
chr20_+_40457599 0.18 ENSDART00000017553
serinc1
serine incorporator 1
chr11_-_26701611 0.18 ENSDART00000083010
acad9
acyl-CoA dehydrogenase family, member 9
chr6_+_11989537 0.18 ENSDART00000190817
baz2ba
bromodomain adjacent to zinc finger domain, 2Ba
chr9_+_33261330 0.18 ENSDART00000135384
usp9
ubiquitin specific peptidase 9
chr25_-_14433503 0.18 ENSDART00000103957
exoc3l1
exocyst complex component 3-like 1
chr3_-_9444749 0.18 ENSDART00000182191
FO904885.3

chr22_-_22301929 0.18 ENSDART00000142027
chaf1a
chromatin assembly factor 1, subunit A (p150)
chr8_+_10001805 0.17 ENSDART00000132894
si:dkey-8e10.2
si:dkey-8e10.2
chr22_+_9522971 0.17 ENSDART00000110048
strip1
striatin interacting protein 1
chr19_+_47299212 0.17 ENSDART00000158262
tpmt.1
thiopurine S-methyltransferase, tandem duplicate 1
chr12_+_1286642 0.17 ENSDART00000157467
pemt
phosphatidylethanolamine N-methyltransferase
chr12_+_9499742 0.17 ENSDART00000044150
ENSDART00000136354
dnajc9
DnaJ (Hsp40) homolog, subfamily C, member 9
chr23_+_16748806 0.16 ENSDART00000137737
ENSDART00000142556
fbxo44
F-box protein 44
chr6_+_19933763 0.16 ENSDART00000166192
pik3r5
phosphoinositide-3-kinase, regulatory subunit 5
chr22_-_3299100 0.16 ENSDART00000160305
si:zfos-943e10.1
si:zfos-943e10.1
chr24_-_25166416 0.16 ENSDART00000111552
ENSDART00000169495
phldb2b
pleckstrin homology-like domain, family B, member 2b
chr9_+_17971935 0.15 ENSDART00000149736
akap11
A kinase (PRKA) anchor protein 11
chr2_-_57344037 0.15 ENSDART00000148873
tcf3a
transcription factor 3a
chr5_-_52964789 0.15 ENSDART00000166267
zfpl1
zinc finger protein-like 1
chr25_+_8407892 0.15 ENSDART00000153536
muc5.2
mucin 5.2
chr20_-_21910043 0.15 ENSDART00000152290
ENSDART00000109084
daam1b
dishevelled associated activator of morphogenesis 1b
chr6_-_31348999 0.14 ENSDART00000153734
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6
chr5_+_26686279 0.14 ENSDART00000193543
tango2
transport and golgi organization 2 homolog (Drosophila)
chr4_-_16641742 0.14 ENSDART00000180605
sinhcaf
SIN3-HDAC complex associated factor
chr5_-_52010122 0.14 ENSDART00000073627
ENSDART00000163898
ENSDART00000051003
cdk7
cyclin-dependent kinase 7
chr14_+_41406321 0.14 ENSDART00000111480
bcorl1
BCL6 corepressor-like 1
chr3_+_22442445 0.14 ENSDART00000190921
wnk4b
WNK lysine deficient protein kinase 4b
chr22_-_3299355 0.14 ENSDART00000190993
si:zfos-943e10.1
si:zfos-943e10.1
chr2_+_10878406 0.14 ENSDART00000091497
tceanc2
transcription elongation factor A (SII) N-terminal and central domain containing 2
chr17_+_43595692 0.13 ENSDART00000156271
cfap99
cilia and flagella associated protein 99
chr4_+_75200467 0.13 ENSDART00000122593
CABZ01043955.1

chr17_-_13026634 0.13 ENSDART00000113713
fam177a1
family with sequence similarity 177, member A1
chr6_-_51771634 0.13 ENSDART00000073847
blcap
bladder cancer associated protein
chr16_-_10516970 0.13 ENSDART00000110606
abhd16a
abhydrolase domain containing 16A
chr7_-_7797654 0.13 ENSDART00000084503
ENSDART00000192779
ENSDART00000173079
trmt10b
tRNA methyltransferase 10B
chr22_-_7778265 0.12 ENSDART00000097276
si:ch73-44m9.3
si:ch73-44m9.3
chr4_-_15103646 0.12 ENSDART00000138183
ENSDART00000181044
nrf1
nuclear respiratory factor 1
chr24_+_37533728 0.12 ENSDART00000061203
rhot2
ras homolog family member T2
chr8_-_36287046 0.12 ENSDART00000162877
si:busm1-194e12.11
si:busm1-194e12.11
chr18_-_39473055 0.12 ENSDART00000122930
scg3
secretogranin III
chr2_+_45344070 0.11 ENSDART00000147245
camsap2b
calmodulin regulated spectrin-associated protein family, member 2b
chr6_+_21684296 0.11 ENSDART00000057223
rhebl1
Ras homolog, mTORC1 binding like 1
chr4_+_25912308 0.11 ENSDART00000167845
ENSDART00000136927
vezt
vezatin, adherens junctions transmembrane protein
chr1_+_46579885 0.11 ENSDART00000144821
mcf2la
mcf.2 cell line derived transforming sequence-like a
chr18_+_44849809 0.11 ENSDART00000097328
arfgap2
ADP-ribosylation factor GTPase activating protein 2
chr8_+_8238727 0.11 ENSDART00000144838
plxnb3
plexin B3
chr5_-_41984298 0.11 ENSDART00000189535
ncor1
nuclear receptor corepressor 1
chr16_-_25400257 0.11 ENSDART00000040756
zgc:136493
zgc:136493
chr13_-_41155472 0.10 ENSDART00000160588
si:dkeyp-86d6.2
si:dkeyp-86d6.2
chr4_+_25912654 0.10 ENSDART00000109508
ENSDART00000134218
vezt
vezatin, adherens junctions transmembrane protein
chr17_-_45383699 0.10 ENSDART00000141182
tmem206
transmembrane protein 206
chr7_+_25135739 0.10 ENSDART00000167326
exoc6b
exocyst complex component 6B
chr6_-_52675630 0.09 ENSDART00000083830
sdc4
syndecan 4

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxd9a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0019532 oxalate transport(GO:0019532)
0.1 0.7 GO:0046490 isopentenyl diphosphate biosynthetic process(GO:0009240) isopentenyl diphosphate metabolic process(GO:0046490)
0.1 1.2 GO:0071539 protein localization to centrosome(GO:0071539)
0.1 0.4 GO:0045648 positive regulation of erythrocyte differentiation(GO:0045648)
0.1 1.1 GO:0061709 reticulophagy(GO:0061709)
0.1 0.4 GO:0034164 regulation of toll-like receptor 9 signaling pathway(GO:0034163) negative regulation of toll-like receptor 9 signaling pathway(GO:0034164)
0.1 0.6 GO:0035093 spermatid nucleus differentiation(GO:0007289) sperm chromatin condensation(GO:0035092) spermatogenesis, exchange of chromosomal proteins(GO:0035093)
0.1 0.5 GO:0000012 single strand break repair(GO:0000012)
0.1 0.3 GO:0016446 somatic diversification of immune receptors via somatic mutation(GO:0002566) somatic hypermutation of immunoglobulin genes(GO:0016446)
0.1 0.3 GO:0055091 phospholipid homeostasis(GO:0055091)
0.1 0.3 GO:0006843 mitochondrial citrate transport(GO:0006843)
0.1 0.3 GO:0071733 transcriptional activation by promoter-enhancer looping(GO:0071733) gene looping(GO:0090202) dsDNA loop formation(GO:0090579)
0.1 0.5 GO:1901339 regulation of store-operated calcium channel activity(GO:1901339)
0.1 0.3 GO:0048209 regulation of vesicle targeting, to, from or within Golgi(GO:0048209)
0.1 0.2 GO:0051660 establishment of centrosome localization(GO:0051660)
0.1 0.2 GO:0006656 phosphatidylcholine biosynthetic process(GO:0006656)
0.1 0.3 GO:0043476 pigment accumulation(GO:0043476)
0.1 0.4 GO:0015809 arginine transport(GO:0015809)
0.0 0.2 GO:0016191 synaptic vesicle uncoating(GO:0016191)
0.0 0.4 GO:0021634 optic nerve formation(GO:0021634)
0.0 0.2 GO:0036371 protein localization to T-tubule(GO:0036371)
0.0 0.3 GO:0010457 centriole-centriole cohesion(GO:0010457)
0.0 0.2 GO:0061439 renal system vasculature morphogenesis(GO:0061438) kidney vasculature morphogenesis(GO:0061439) glomerulus vasculature morphogenesis(GO:0072103) glomerular capillary formation(GO:0072104)
0.0 0.1 GO:0070417 cellular response to cold(GO:0070417)
0.0 0.3 GO:0006501 C-terminal protein lipidation(GO:0006501)
0.0 0.2 GO:0000244 spliceosomal tri-snRNP complex assembly(GO:0000244)
0.0 0.3 GO:0035372 protein localization to microtubule(GO:0035372) protein localization to microtubule plus-end(GO:1904825)
0.0 0.2 GO:0048714 positive regulation of glial cell differentiation(GO:0045687) positive regulation of oligodendrocyte differentiation(GO:0048714)
0.0 0.4 GO:0006622 protein targeting to lysosome(GO:0006622)
0.0 0.1 GO:0035964 COPI-coated vesicle budding(GO:0035964) Golgi transport vesicle coating(GO:0048200) COPI coating of Golgi vesicle(GO:0048205)
0.0 0.7 GO:2000401 regulation of lymphocyte migration(GO:2000401)
0.0 0.4 GO:0006999 NLS-bearing protein import into nucleus(GO:0006607) nuclear pore organization(GO:0006999)
0.0 0.3 GO:0030104 water homeostasis(GO:0030104)
0.0 0.4 GO:0006689 ganglioside catabolic process(GO:0006689)
0.0 0.2 GO:0070294 renal sodium ion transport(GO:0003096) renal sodium ion absorption(GO:0070294)
0.0 0.4 GO:0006646 phosphatidylethanolamine biosynthetic process(GO:0006646)
0.0 0.1 GO:0052651 phosphatidylserine catabolic process(GO:0006660) monoacylglycerol metabolic process(GO:0046462) monoacylglycerol catabolic process(GO:0052651)
0.0 0.1 GO:0090646 mitochondrial tRNA processing(GO:0090646)
0.0 0.4 GO:0035459 cargo loading into vesicle(GO:0035459)
0.0 0.4 GO:0006613 cotranslational protein targeting to membrane(GO:0006613)
0.0 0.1 GO:0036445 neuronal stem cell division(GO:0036445) somatic stem cell division(GO:0048103)
0.0 0.3 GO:0016486 peptide hormone processing(GO:0016486)
0.0 0.3 GO:0045116 protein neddylation(GO:0045116)
0.0 0.2 GO:0006658 phosphatidylserine metabolic process(GO:0006658)
0.0 0.1 GO:0030043 actin filament fragmentation(GO:0030043)
0.0 0.1 GO:0034476 U1 snRNA 3'-end processing(GO:0034473) U5 snRNA 3'-end processing(GO:0034476) nuclear polyadenylation-dependent mRNA catabolic process(GO:0071042) polyadenylation-dependent mRNA catabolic process(GO:0071047)
0.0 0.4 GO:0035196 production of miRNAs involved in gene silencing by miRNA(GO:0035196)
0.0 0.1 GO:0097039 protein linear polyubiquitination(GO:0097039)
0.0 0.2 GO:0051601 exocyst localization(GO:0051601)
0.0 0.3 GO:0000727 double-strand break repair via break-induced replication(GO:0000727)
0.0 0.1 GO:1905097 regulation of guanyl-nucleotide exchange factor activity(GO:1905097) regulation of Rho guanyl-nucleotide exchange factor activity(GO:2001106)
0.0 0.2 GO:0038203 TORC2 signaling(GO:0038203)
0.0 0.6 GO:0032011 ARF protein signal transduction(GO:0032011) regulation of ARF protein signal transduction(GO:0032012)
0.0 0.4 GO:0070593 dendrite self-avoidance(GO:0070593)
0.0 0.9 GO:0051607 defense response to virus(GO:0051607)
0.0 0.2 GO:0071712 ER-associated misfolded protein catabolic process(GO:0071712)
0.0 0.1 GO:0010447 response to acidic pH(GO:0010447) negative regulation of transcription from RNA polymerase II promoter in response to stress(GO:0097201)
0.0 0.4 GO:0071230 cellular response to amino acid stimulus(GO:0071230)
0.0 0.2 GO:0098884 postsynaptic neurotransmitter receptor internalization(GO:0098884)
0.0 0.1 GO:0033211 adiponectin-activated signaling pathway(GO:0033211)
0.0 1.0 GO:0042742 defense response to bacterium(GO:0042742)
0.0 0.5 GO:0050853 B cell receptor signaling pathway(GO:0050853)
0.0 0.4 GO:0009636 response to toxic substance(GO:0009636)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 GO:1990111 spermatoproteasome complex(GO:1990111)
0.1 0.4 GO:0010369 chromocenter(GO:0010369)
0.1 0.5 GO:0070319 Golgi to plasma membrane transport vesicle(GO:0070319)
0.1 0.3 GO:0032777 Piccolo NuA4 histone acetyltransferase complex(GO:0032777)
0.1 0.3 GO:0032301 MutSalpha complex(GO:0032301)
0.1 0.7 GO:0034045 pre-autophagosomal structure membrane(GO:0034045)
0.1 0.4 GO:0034448 EGO complex(GO:0034448) Gtr1-Gtr2 GTPase complex(GO:1990131)
0.1 0.4 GO:0005784 Sec61 translocon complex(GO:0005784)
0.1 0.3 GO:0005797 Golgi medial cisterna(GO:0005797)
0.1 0.4 GO:0071914 prominosome(GO:0071914)
0.0 0.4 GO:0044613 nuclear pore central transport channel(GO:0044613)
0.0 0.2 GO:0033186 CAF-1 complex(GO:0033186)
0.0 0.2 GO:0000839 Hrd1p ubiquitin ligase ERAD-L complex(GO:0000839)
0.0 0.3 GO:0035145 exon-exon junction complex(GO:0035145)
0.0 0.4 GO:0000940 condensed chromosome outer kinetochore(GO:0000940)
0.0 1.0 GO:0031105 septin ring(GO:0005940) septin complex(GO:0031105) septin cytoskeleton(GO:0032156)
0.0 1.9 GO:0005814 centriole(GO:0005814)
0.0 0.2 GO:0042788 polysomal ribosome(GO:0042788)
0.0 0.4 GO:0015030 Cajal body(GO:0015030)
0.0 0.2 GO:0016580 Sin3 complex(GO:0016580)
0.0 0.9 GO:0071013 catalytic step 2 spliceosome(GO:0071013)
0.0 0.1 GO:0017177 glucosidase II complex(GO:0017177)
0.0 0.3 GO:0071564 npBAF complex(GO:0071564)
0.0 0.4 GO:0016514 SWI/SNF complex(GO:0016514)
0.0 0.3 GO:0048188 Set1C/COMPASS complex(GO:0048188)
0.0 0.2 GO:0030315 T-tubule(GO:0030315)
0.0 0.3 GO:0035371 microtubule plus-end(GO:0035371)
0.0 0.3 GO:0008278 cohesin complex(GO:0008278)
0.0 0.5 GO:0000781 chromosome, telomeric region(GO:0000781)
0.0 0.1 GO:0005675 holo TFIIH complex(GO:0005675)
0.0 0.2 GO:0098844 postsynaptic endocytic zone membrane(GO:0098844)
0.0 0.1 GO:0036449 microtubule minus-end(GO:0036449)
0.0 0.6 GO:0097517 stress fiber(GO:0001725) contractile actin filament bundle(GO:0097517)
0.0 0.1 GO:0071797 LUBAC complex(GO:0071797)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0015105 arsenite transmembrane transporter activity(GO:0015105)
0.1 0.4 GO:0015562 efflux transmembrane transporter activity(GO:0015562)
0.1 0.7 GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds(GO:0016863)
0.1 0.3 GO:0032357 guanine/thymine mispair binding(GO:0032137) single base insertion or deletion binding(GO:0032138) single thymine insertion binding(GO:0032143) oxidized DNA binding(GO:0032356) oxidized purine DNA binding(GO:0032357) mismatch repair complex binding(GO:0032404) MutLalpha complex binding(GO:0032405)
0.1 0.3 GO:0046403 polynucleotide 3'-phosphatase activity(GO:0046403)
0.1 0.5 GO:0035173 histone kinase activity(GO:0035173)
0.1 0.2 GO:1990381 ubiquitin-specific protease binding(GO:1990381)
0.1 0.4 GO:0008046 axon guidance receptor activity(GO:0008046)
0.1 0.4 GO:0004307 diacylglycerol cholinephosphotransferase activity(GO:0004142) ethanolaminephosphotransferase activity(GO:0004307)
0.1 0.3 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.1 0.2 GO:0004466 long-chain-acyl-CoA dehydrogenase activity(GO:0004466)
0.1 0.2 GO:0008119 thiopurine S-methyltransferase activity(GO:0008119)
0.1 0.6 GO:0016504 peptidase activator activity(GO:0016504)
0.0 0.3 GO:0030274 LIM domain binding(GO:0030274)
0.0 0.2 GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity(GO:0003980)
0.0 0.7 GO:0019531 oxalate transmembrane transporter activity(GO:0019531)
0.0 0.4 GO:0035198 miRNA binding(GO:0035198)
0.0 0.1 GO:0030267 hydroxypyruvate reductase activity(GO:0016618) glyoxylate reductase (NADP) activity(GO:0030267)
0.0 0.2 GO:0005483 soluble NSF attachment protein activity(GO:0005483)
0.0 0.1 GO:0052905 tRNA (guanine(9)-N(1))-methyltransferase activity(GO:0052905)
0.0 0.4 GO:0005537 mannose binding(GO:0005537)
0.0 0.3 GO:0017091 AU-rich element binding(GO:0017091) mRNA 3'-UTR AU-rich region binding(GO:0035925)
0.0 0.6 GO:0050321 tau-protein kinase activity(GO:0050321)
0.0 0.5 GO:0002039 p53 binding(GO:0002039)
0.0 0.3 GO:0030296 protein tyrosine kinase activator activity(GO:0030296)
0.0 0.2 GO:0061665 SUMO ligase activity(GO:0061665)
0.0 0.1 GO:0000033 alpha-1,3-mannosyltransferase activity(GO:0000033)
0.0 0.3 GO:0097602 cullin family protein binding(GO:0097602)
0.0 0.8 GO:0003725 double-stranded RNA binding(GO:0003725)
0.0 0.4 GO:0017056 structural constituent of nuclear pore(GO:0017056)
0.0 0.1 GO:0046966 thyroid hormone receptor binding(GO:0046966)
0.0 0.4 GO:0004198 calcium-dependent cysteine-type endopeptidase activity(GO:0004198)
0.0 0.2 GO:0070001 aspartic-type endopeptidase activity(GO:0004190) aspartic-type peptidase activity(GO:0070001)
0.0 0.4 GO:0098632 protein binding involved in cell-cell adhesion(GO:0098632)
0.0 0.1 GO:0004499 N,N-dimethylaniline monooxygenase activity(GO:0004499)
0.0 0.1 GO:0008353 RNA polymerase II carboxy-terminal domain kinase activity(GO:0008353)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.1 PID HEDGEHOG 2PATHWAY Signaling events mediated by the Hedgehog family
0.0 0.8 PID ARF 3PATHWAY Arf1 pathway
0.0 0.4 PID ECADHERIN KERATINOCYTE PATHWAY E-cadherin signaling in keratinocytes
0.0 0.2 PID IL12 STAT4 PATHWAY IL12 signaling mediated by STAT4
0.0 0.1 SA G2 AND M PHASES Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition.
0.0 0.4 PID FRA PATHWAY Validated transcriptional targets of AP1 family members Fra1 and Fra2
0.0 0.3 PID DNA PK PATHWAY DNA-PK pathway in nonhomologous end joining

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 REACTOME COPI MEDIATED TRANSPORT Genes involved in COPI Mediated Transport
0.0 0.8 REACTOME N GLYCAN TRIMMING IN THE ER AND CALNEXIN CALRETICULIN CYCLE Genes involved in N-glycan trimming in the ER and Calnexin/Calreticulin cycle
0.0 0.3 REACTOME SIGNALING BY NODAL Genes involved in Signaling by NODAL
0.0 0.5 REACTOME RESOLUTION OF AP SITES VIA THE SINGLE NUCLEOTIDE REPLACEMENT PATHWAY Genes involved in Resolution of AP sites via the single-nucleotide replacement pathway
0.0 1.6 REACTOME TRANSPORT OF MATURE TRANSCRIPT TO CYTOPLASM Genes involved in Transport of Mature Transcript to Cytoplasm
0.0 0.7 REACTOME CHOLESTEROL BIOSYNTHESIS Genes involved in Cholesterol biosynthesis
0.0 0.6 REACTOME LYSOSOME VESICLE BIOGENESIS Genes involved in Lysosome Vesicle Biogenesis
0.0 0.6 REACTOME FORMATION OF TRANSCRIPTION COUPLED NER TC NER REPAIR COMPLEX Genes involved in Formation of transcription-coupled NER (TC-NER) repair complex
0.0 0.4 REACTOME NEGATIVE REGULATORS OF RIG I MDA5 SIGNALING Genes involved in Negative regulators of RIG-I/MDA5 signaling
0.0 0.4 REACTOME GLYCOSPHINGOLIPID METABOLISM Genes involved in Glycosphingolipid metabolism