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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for klf15+si:ch211-117k10.3

Z-value: 0.43

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Transcription factors associated with klf15+si:ch211-117k10.3

Gene Symbol Gene ID Gene Info
si_ch211-117k10.3
ENSDARG00000090914 si_ch211-117k10.3
klf15
ENSDARG00000091127 Kruppel-like factor 15

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
klf15dr11_v1_chr23_-_35195908_35195908-0.474.8e-02Click!
si:ch211-117k10.3dr11_v1_chr11_-_38513978_385139780.145.7e-01Click!

Activity profile of klf15+si:ch211-117k10.3 motif

Sorted Z-values of klf15+si:ch211-117k10.3 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr24_-_38110779 0.79 ENSDART00000147783
crp
c-reactive protein, pentraxin-related
chr25_+_150570 0.63 ENSDART00000170892
adam10b
ADAM metallopeptidase domain 10b
chr3_-_16289826 0.61 ENSDART00000131972
bckdhbl
branched chain keto acid dehydrogenase E1, beta polypeptide, like
chr20_-_14665002 0.60 ENSDART00000152816
scrn2
secernin 2
chr22_+_26853254 0.60 ENSDART00000182487
tmem186
transmembrane protein 186
chr20_-_48516765 0.56 ENSDART00000150200
si:zfos-223e1.2
si:zfos-223e1.2
chr2_-_44183613 0.56 ENSDART00000079596
cadm3
cell adhesion molecule 3
chr14_+_48960078 0.47 ENSDART00000165514
mif
macrophage migration inhibitory factor
chr17_-_4395373 0.46 ENSDART00000015923
klhl10a
kelch-like family member 10a
chr24_+_42131564 0.46 ENSDART00000153854
wwp1
WW domain containing E3 ubiquitin protein ligase 1
chr2_-_44183451 0.44 ENSDART00000111246
cadm3
cell adhesion molecule 3
chr10_+_44719697 0.41 ENSDART00000158087
scarb1
scavenger receptor class B, member 1
chr10_+_33382858 0.39 ENSDART00000063662
mdh2
malate dehydrogenase 2, NAD (mitochondrial)
chr2_-_51700709 0.38 ENSDART00000188601
tgm1l1
transglutaminase 1 like 1
chr23_+_31245395 0.36 ENSDART00000053588
irak1bp1
interleukin-1 receptor-associated kinase 1 binding protein 1
chr21_-_43117327 0.35 ENSDART00000122352
p4ha2
procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide 2
chr16_+_10918252 0.35 ENSDART00000172949
pou2f2a
POU class 2 homeobox 2a
chr20_-_7080427 0.34 ENSDART00000140166
ENSDART00000023677
si:ch211-121a2.2
si:ch211-121a2.2
chr10_-_43113731 0.32 ENSDART00000138099
tmem167a
transmembrane protein 167A
chr7_+_1449999 0.32 ENSDART00000173864
si:cabz01101003.1
si:cabz01101003.1
chr4_-_18595525 0.32 ENSDART00000049061
cdkn1ba
cyclin-dependent kinase inhibitor 1Ba
chr11_+_6010177 0.31 ENSDART00000170047
ENSDART00000022526
ENSDART00000161001
ENSDART00000188999
gtpbp3
GTP binding protein 3, mitochondrial
chr24_-_4450238 0.31 ENSDART00000066835
fzd8a
frizzled class receptor 8a
chr12_-_31103906 0.30 ENSDART00000189099
ENSDART00000121527
ENSDART00000185635
ENSDART00000183754
tcf7l2
transcription factor 7 like 2
chr22_-_24285432 0.29 ENSDART00000164083
si:ch211-117l17.4
si:ch211-117l17.4
chr5_-_16351306 0.29 ENSDART00000168643
CABZ01088700.1

chr12_+_5530247 0.29 ENSDART00000114637
ace
angiotensin I converting enzyme (peptidyl-dipeptidase A) 1
chr10_+_42678520 0.27 ENSDART00000182496
rhobtb2b
Rho-related BTB domain containing 2b
chr16_-_12470034 0.26 ENSDART00000147483
ephb6
eph receptor B6
chr14_-_9522364 0.26 ENSDART00000054689
atoh8
atonal bHLH transcription factor 8
chr2_+_7192966 0.23 ENSDART00000142735
si:ch211-13f8.1
si:ch211-13f8.1
chr14_-_32089117 0.23 ENSDART00000158014
si:ch211-69b22.5
si:ch211-69b22.5
chr16_+_11029762 0.23 ENSDART00000091183
erfl3
Ets2 repressor factor like 3
chr14_+_22172047 0.22 ENSDART00000114750
ENSDART00000148259
gabrb2
gamma-aminobutyric acid (GABA) A receptor, beta 2
chr11_-_40504170 0.22 ENSDART00000165394
si:dkeyp-61b2.1
si:dkeyp-61b2.1
chr8_-_34762163 0.22 ENSDART00000114080
setd1bb
SET domain containing 1B, b
chr10_+_39476432 0.21 ENSDART00000190375
ENSDART00000183954
kirrel3a
kirre like nephrin family adhesion molecule 3a
chr16_+_9713850 0.21 ENSDART00000164103
ecm1b
extracellular matrix protein 1b
chr1_-_38709551 0.21 ENSDART00000128794
gpm6ab
glycoprotein M6Ab
chr17_+_53418445 0.20 ENSDART00000097631
slc9a1b
solute carrier family 9 member A1b
chr1_-_39943596 0.20 ENSDART00000149730
stox2a
storkhead box 2a
chr22_+_26703026 0.20 ENSDART00000158756
crebbpa
CREB binding protein a
chr4_+_3358383 0.19 ENSDART00000075320
nampta
nicotinamide phosphoribosyltransferase a
chr7_+_23495986 0.19 ENSDART00000190739
ENSDART00000115299
ENSDART00000101423
ENSDART00000142401
zgc:109889
zgc:109889
chr12_-_15002563 0.18 ENSDART00000108852
ENSDART00000141909
pkmyt1
protein kinase, membrane associated tyrosine/threonine 1
chr2_-_23479714 0.18 ENSDART00000167291
si:ch211-14p21.3
si:ch211-14p21.3
chr14_+_24283915 0.17 ENSDART00000172868
klhl3
kelch-like family member 3
chr11_-_97817 0.16 ENSDART00000092903
elmo2
engulfment and cell motility 2
chr13_-_45523026 0.15 ENSDART00000020663
rhd
Rh blood group, D antigen
chr8_+_1082100 0.15 ENSDART00000149276
lzts3b
leucine zipper, putative tumor suppressor family member 3b
chr6_-_442163 0.14 ENSDART00000163564
ENSDART00000189134
ENSDART00000169789
grap2b
GRB2-related adaptor protein 2b
chr12_-_4540564 0.14 ENSDART00000106566
CABZ01030107.1

chr19_+_48117995 0.14 ENSDART00000170865
nme2b.1
NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 1
chr23_+_35759843 0.14 ENSDART00000047082
gdap1l1
ganglioside induced differentiation associated protein 1-like 1
chr10_+_39476600 0.14 ENSDART00000135756
kirrel3a
kirre like nephrin family adhesion molecule 3a
chr18_-_26715156 0.14 ENSDART00000142043
malt3
MALT paracaspase 3
chr18_+_33725576 0.14 ENSDART00000146816
si:dkey-145c18.5
si:dkey-145c18.5
chr12_+_15002757 0.13 ENSDART00000135036
mylpfb
myosin light chain, phosphorylatable, fast skeletal muscle b
chr7_+_46261199 0.13 ENSDART00000170390
ENSDART00000183227
znf536
zinc finger protein 536
chr5_-_35264517 0.13 ENSDART00000114981
ptcd2
pentatricopeptide repeat domain 2
chr5_-_30080332 0.13 ENSDART00000140049
bco2a
beta-carotene oxygenase 2a
chr23_-_40817792 0.12 ENSDART00000136343
si:dkeyp-27c8.1
si:dkeyp-27c8.1
chr22_-_13042992 0.12 ENSDART00000028787
ahr1b
aryl hydrocarbon receptor 1b
chr2_+_24781026 0.12 ENSDART00000145692
pde4ca
phosphodiesterase 4C, cAMP-specific a
chr11_-_3334248 0.12 ENSDART00000154314
ENSDART00000121861
prph
peripherin
chr5_-_36916790 0.12 ENSDART00000143827
kptn
kaptin (actin binding protein)
chr24_+_28525507 0.12 ENSDART00000191121
arhgap29a
Rho GTPase activating protein 29a
chr7_-_55454406 0.12 ENSDART00000108646
piezo1
piezo-type mechanosensitive ion channel component 1
chr15_-_23376541 0.11 ENSDART00000078570
c1qtnf5
C1q and TNF related 5
chr4_-_68569527 0.11 ENSDART00000192091
BX548011.5

chr3_+_23703704 0.11 ENSDART00000024256
hoxb6a
homeobox B6a
chr24_-_40774028 0.10 ENSDART00000166578
CU633479.2

chr4_-_73572030 0.10 ENSDART00000121652
znf1015
zinc finger protein 1015
chr10_-_24961310 0.10 ENSDART00000037303
si:ch211-214k5.3
si:ch211-214k5.3
chr9_-_8314028 0.10 ENSDART00000102739
si:ch211-145c1.1
si:ch211-145c1.1
chr18_-_26715655 0.10 ENSDART00000181497
malt3
MALT paracaspase 3
chr17_+_33313566 0.10 ENSDART00000045040
si:ch211-132f19.7
si:ch211-132f19.7
chr5_-_30074332 0.09 ENSDART00000147963
bco2a
beta-carotene oxygenase 2a
chr17_+_52822422 0.09 ENSDART00000158273
ENSDART00000161414
meis2a
Meis homeobox 2a
chr16_-_12914288 0.09 ENSDART00000184221
cacng8b
calcium channel, voltage-dependent, gamma subunit 8b
chr10_-_9115383 0.09 ENSDART00000139324
si:dkeyp-41f9.3
si:dkeyp-41f9.3
chr21_+_41649336 0.08 ENSDART00000164694
ENSDART00000181539
ppp2r2bb
protein phosphatase 2, regulatory subunit B, beta b
chr1_-_44638058 0.08 ENSDART00000081835
slc43a1b
solute carrier family 43 (amino acid system L transporter), member 1b
chr7_+_44445595 0.07 ENSDART00000108766
cdh5
cadherin 5
chr21_+_1143141 0.07 ENSDART00000178294
CABZ01086139.1

chr22_-_17474583 0.07 ENSDART00000148027
si:ch211-197g15.8
si:ch211-197g15.8
chr9_+_29589790 0.07 ENSDART00000140388
mcf2lb
mcf.2 cell line derived transforming sequence-like b
chr16_-_31976269 0.07 ENSDART00000139664
styk1
serine/threonine/tyrosine kinase 1
chr21_+_25660613 0.07 ENSDART00000134017
si:dkey-17e16.15
si:dkey-17e16.15
chr4_+_55758103 0.07 ENSDART00000185964
CT583728.23

chr22_-_1168291 0.06 ENSDART00000167724
si:ch1073-181h11.4
si:ch1073-181h11.4
chr4_-_11064073 0.06 ENSDART00000150760
si:dkey-21h14.8
si:dkey-21h14.8
chr20_+_35279968 0.06 ENSDART00000168216
ENSDART00000153332
fam49a
family with sequence similarity 49, member A
chr18_-_51015718 0.06 ENSDART00000190698
LO018598.1

chr22_-_6777976 0.06 ENSDART00000187946
CT583625.5

chr5_-_28606916 0.06 ENSDART00000026107
ENSDART00000137717
tnc
tenascin C
chr5_-_8636168 0.05 ENSDART00000134877
fyba
FYN binding protein a
chr6_-_43677125 0.05 ENSDART00000150128
foxp1b
forkhead box P1b
chr22_+_7738966 0.05 ENSDART00000147073
si:ch73-44m9.5
si:ch73-44m9.5
chr9_-_27442339 0.05 ENSDART00000138602
stxbp5l
syntaxin binding protein 5-like
chr5_+_9382301 0.04 ENSDART00000124017
ugt2a7
UDP glucuronosyltransferase 2 family, polypeptide A7
chr11_-_41130239 0.04 ENSDART00000173268
dnajc11b
DnaJ (Hsp40) homolog, subfamily C, member 11b
chr21_-_37889727 0.04 ENSDART00000163612
ENSDART00000180958
gabrb4
gamma-aminobutyric acid (GABA) A receptor, beta 4
chr1_-_39976492 0.04 ENSDART00000181680
stox2a
storkhead box 2a
chr6_+_23712911 0.03 ENSDART00000167795
zgc:158654
zgc:158654
chr3_+_52467879 0.03 ENSDART00000156039
adgre5a
adhesion G protein-coupled receptor E5a
chr22_+_12477996 0.03 ENSDART00000177704
CR847870.3

chr3_+_32425202 0.03 ENSDART00000156464
prr12b
proline rich 12b
chr7_-_5711197 0.03 ENSDART00000134367
si:dkey-10h3.2
si:dkey-10h3.2
chr6_+_38381957 0.03 ENSDART00000087300
gabrb3
gamma-aminobutyric acid (GABA) A receptor, beta 3
chr21_-_3201027 0.02 ENSDART00000161256
zbtb7c
zinc finger and BTB domain containing 7C
chr7_-_71331499 0.02 ENSDART00000081245
dhx15
DEAH (Asp-Glu-Ala-His) box helicase 15
chr10_-_40333319 0.02 ENSDART00000150479
taar20a
trace amine associated receptor 20a
chr22_-_24284961 0.02 ENSDART00000141230
si:ch211-117l17.4
si:ch211-117l17.4
chr18_-_19350792 0.02 ENSDART00000147902
megf11
multiple EGF-like-domains 11
chr21_-_45086170 0.01 ENSDART00000188963
rapgef6
Rap guanine nucleotide exchange factor (GEF) 6
chr12_-_16990896 0.01 ENSDART00000152402
ifit12
interferon-induced protein with tetratricopeptide repeats 12
chr3_-_36690348 0.01 ENSDART00000192513
myh11b
myosin, heavy chain 11b, smooth muscle
chr10_+_5645887 0.01 ENSDART00000171426
pdzph1
PDZ and pleckstrin homology domains 1
chr21_+_11244068 0.00 ENSDART00000163432
arid6
AT-rich interaction domain 6
chr23_+_7518294 0.00 ENSDART00000081536
hck
HCK proto-oncogene, Src family tyrosine kinase
chr5_+_27525477 0.00 ENSDART00000051491
sfrp1a
secreted frizzled-related protein 1a
chr2_+_43469241 0.00 ENSDART00000142078
ENSDART00000098265
nrp1b
neuropilin 1b
chr15_-_18223769 0.00 ENSDART00000139966
or131-1
odorant receptor, family H, subfamily 131, member 1
chr6_+_52918537 0.00 ENSDART00000174229
or137-1
odorant receptor, family H, subfamily 137, member 1
chr7_-_71331690 0.00 ENSDART00000149682
dhx15
DEAH (Asp-Glu-Ala-His) box helicase 15

Network of associatons between targets according to the STRING database.

First level regulatory network of klf15+si:ch211-117k10.3

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0043654 recognition of apoptotic cell(GO:0043654)
0.1 0.3 GO:0060898 spinal cord radial glial cell differentiation(GO:0021531) eye field cell fate commitment involved in camera-type eye formation(GO:0060898)
0.1 0.3 GO:2001014 regulation of skeletal muscle cell differentiation(GO:2001014)
0.1 0.3 GO:0010226 response to lithium ion(GO:0010226)
0.1 0.2 GO:0072156 distal tubule morphogenesis(GO:0072156)
0.0 0.3 GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.0 0.4 GO:0006108 malate metabolic process(GO:0006108)
0.0 0.2 GO:0016121 carotene metabolic process(GO:0016119) carotene catabolic process(GO:0016121) terpene metabolic process(GO:0042214) terpene catabolic process(GO:0046247)
0.0 0.1 GO:0010481 ventriculo bulbo valve development(GO:0003173) epidermal cell division(GO:0010481) regulation of epidermal cell division(GO:0010482)
0.0 0.6 GO:0006509 membrane protein ectodomain proteolysis(GO:0006509)
0.0 0.2 GO:0098719 sodium ion import(GO:0097369) sodium ion import across plasma membrane(GO:0098719) sodium ion import into cell(GO:1990118)
0.0 0.1 GO:0008582 regulation of synaptic growth at neuromuscular junction(GO:0008582) axon regeneration at neuromuscular junction(GO:0014814) positive regulation of synaptic growth at neuromuscular junction(GO:0045887)
0.0 0.2 GO:0072488 ammonium transmembrane transport(GO:0072488)
0.0 0.3 GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline(GO:0018401) 4-hydroxyproline metabolic process(GO:0019471)
0.0 0.4 GO:0018149 peptide cross-linking(GO:0018149)
0.0 0.3 GO:0002098 tRNA wobble uridine modification(GO:0002098)
0.0 0.2 GO:0051127 positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601)
0.0 0.5 GO:0060117 auditory receptor cell development(GO:0060117)
0.0 0.1 GO:0001955 blood vessel maturation(GO:0001955) regulation of establishment of cell polarity(GO:2000114)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0071664 catenin-TCF7L2 complex(GO:0071664)
0.0 0.2 GO:0044295 axonal growth cone(GO:0044295)
0.0 0.2 GO:0048188 Set1C/COMPASS complex(GO:0048188)
0.0 0.2 GO:0031209 SCAR complex(GO:0031209)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:1902945 metalloendopeptidase activity involved in amyloid precursor protein catabolic process(GO:1902945)
0.1 0.6 GO:0070004 cysteine-type exopeptidase activity(GO:0070004)
0.1 0.4 GO:0030169 low-density lipoprotein particle binding(GO:0030169)
0.1 0.4 GO:0030060 L-malate dehydrogenase activity(GO:0030060)
0.0 0.3 GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861)
0.0 0.6 GO:0033691 sialic acid binding(GO:0033691)
0.0 0.3 GO:0004656 procollagen-proline 4-dioxygenase activity(GO:0004656)
0.0 0.2 GO:0001217 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional repressor activity, sequence-specific DNA binding(GO:0001217)
0.0 0.2 GO:0010436 beta-carotene 15,15'-monooxygenase activity(GO:0003834) carotenoid dioxygenase activity(GO:0010436)
0.0 0.2 GO:0071933 Arp2/3 complex binding(GO:0071933)
0.0 0.3 GO:0042813 Wnt-activated receptor activity(GO:0042813)
0.0 0.4 GO:0003810 protein-glutamine gamma-glutamyltransferase activity(GO:0003810)
0.0 0.2 GO:0015385 monovalent cation:proton antiporter activity(GO:0005451) sodium:proton antiporter activity(GO:0015385) potassium:proton antiporter activity(GO:0015386)
0.0 0.3 GO:0005005 transmembrane-ephrin receptor activity(GO:0005005)
0.0 0.8 GO:0015485 cholesterol binding(GO:0015485)
0.0 0.2 GO:0005080 protein kinase C binding(GO:0005080)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 SA MMP CYTOKINE CONNECTION Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix.
0.0 0.8 PID IL6 7 PATHWAY IL6-mediated signaling events
0.0 0.5 PID ERBB4 PATHWAY ErbB4 signaling events

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.8 REACTOME CREATION OF C4 AND C2 ACTIVATORS Genes involved in Creation of C4 and C2 activators
0.0 0.4 REACTOME HDL MEDIATED LIPID TRANSPORT Genes involved in HDL-mediated lipid transport
0.0 0.4 REACTOME CITRIC ACID CYCLE TCA CYCLE Genes involved in Citric acid cycle (TCA cycle)
0.0 0.2 REACTOME GABA A RECEPTOR ACTIVATION Genes involved in GABA A receptor activation
0.0 0.2 REACTOME CYCLIN A B1 ASSOCIATED EVENTS DURING G2 M TRANSITION Genes involved in Cyclin A/B1 associated events during G2/M transition