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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for phox2ba

Z-value: 0.20

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Transcription factors associated with phox2ba

Gene Symbol Gene ID Gene Info
phox2ba
ENSDARG00000075330 paired like homeobox 2Ba

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
phox2badr11_v1_chr1_-_19079957_190799570.513.2e-02Click!

Activity profile of phox2ba motif

Sorted Z-values of phox2ba motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr9_+_22634073 0.19 ENSDART00000181822
etv5a
ets variant 5a
chr14_+_31493306 0.18 ENSDART00000138341
phf6
PHD finger protein 6
chr8_+_16758304 0.18 ENSDART00000133514
elovl7a
ELOVL fatty acid elongase 7a
chr8_-_38355268 0.18 ENSDART00000129597
sorbs3
sorbin and SH3 domain containing 3
chr17_-_20202725 0.17 ENSDART00000133650
ecd
ecdysoneless homolog (Drosophila)
chr20_-_38801981 0.17 ENSDART00000125333
cad
carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
chr13_-_12021566 0.17 ENSDART00000125430
pprc1
peroxisome proliferator-activated receptor gamma, coactivator-related 1
chr7_-_41746427 0.14 ENSDART00000174232
arl8
ADP-ribosylation factor-like 8
chr4_-_77551860 0.14 ENSDART00000188176
AL935186.6

chr22_+_2533514 0.14 ENSDART00000147967
si:ch73-92e7.4
si:ch73-92e7.4
chr21_+_18910502 0.14 ENSDART00000147567
smpd4
sphingomyelin phosphodiesterase 4
chr3_-_40054615 0.12 ENSDART00000003511
ENSDART00000102540
ENSDART00000146121
llgl1
lethal giant larvae homolog 1 (Drosophila)
chr4_-_4834347 0.11 ENSDART00000141803
coa6
cytochrome c oxidase assembly factor 6
chr15_+_2500510 0.11 ENSDART00000180329
wdr53
WD repeat domain 53
chr4_-_4834617 0.10 ENSDART00000141539
coa6
cytochrome c oxidase assembly factor 6
chr17_+_24821627 0.10 ENSDART00000112389
wdr43
WD repeat domain 43
chr12_-_30043809 0.10 ENSDART00000150220
ENSDART00000075889
ENSDART00000148847
trub1
TruB pseudouridine (psi) synthase family member 1
chr3_+_23247325 0.09 ENSDART00000114190
ppp1r9ba
protein phosphatase 1, regulatory subunit 9Ba
chr8_+_7854130 0.09 ENSDART00000165575
cxxc1a
CXXC finger protein 1a
chr5_-_44829719 0.09 ENSDART00000019104
fbp2
fructose-1,6-bisphosphatase 2
chr16_+_53387085 0.08 ENSDART00000154223
ENSDART00000101404
kif13a
kinesin family member 13A
chr11_+_24800156 0.08 ENSDART00000131976
adipor1a
adiponectin receptor 1a
chr4_+_76509294 0.08 ENSDART00000099899
ms4a17a.17
membrane-spanning 4-domains, subfamily A, member 17A.17
chr20_-_18736281 0.08 ENSDART00000142837
enpp5
ectonucleotide pyrophosphatase/phosphodiesterase 5
chr17_+_27134806 0.08 ENSDART00000151901
rps6ka1
ribosomal protein S6 kinase a, polypeptide 1
chr6_-_11800427 0.07 ENSDART00000126243
march7
membrane-associated ring finger (C3HC4) 7
chr18_+_27598755 0.07 ENSDART00000193808
cd82b
CD82 molecule b
chr8_+_10862353 0.07 ENSDART00000140717
brpf3b
bromodomain and PHD finger containing, 3b
chr8_+_43016714 0.06 ENSDART00000142671
rassf2a
Ras association (RalGDS/AF-6) domain family member 2a
chr24_+_19542323 0.06 ENSDART00000140379
ENSDART00000142830
sulf1
sulfatase 1
chr1_+_10074343 0.06 ENSDART00000190194
si:ch73-132f6.5
si:ch73-132f6.5
chr2_+_44512324 0.05 ENSDART00000155017
ENSDART00000156310
ENSDART00000156686
pask
PAS domain containing serine/threonine kinase
chr19_-_33850201 0.05 ENSDART00000168583
otud6b
OTU domain containing 6B
chr1_+_10074601 0.05 ENSDART00000168473
si:ch73-132f6.5
si:ch73-132f6.5
chr18_-_5111449 0.05 ENSDART00000046902
pdcd10a
programmed cell death 10a
chr1_+_26677406 0.04 ENSDART00000183427
ENSDART00000180366
ENSDART00000181997
si:dkey-25o16.4
si:dkey-25o16.4
chr18_+_27000850 0.04 ENSDART00000188906
ENSDART00000086131
pik3c2a
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha
chr2_-_26590628 0.04 ENSDART00000025120
ndc1
NDC1 transmembrane nucleoporin
chr6_+_16493755 0.04 ENSDART00000126318
si:ch73-193c12.2
si:ch73-193c12.2
chr24_-_25574967 0.04 ENSDART00000189828
cnksr2a
connector enhancer of kinase suppressor of Ras 2a
chr8_-_36370552 0.04 ENSDART00000097932
ENSDART00000148323
si:busm1-104n07.3
si:busm1-104n07.3
chr1_+_57774454 0.04 ENSDART00000152507
si:dkey-1c7.2
si:dkey-1c7.2
chr23_-_14830627 0.04 ENSDART00000134659
sla2
Src-like-adaptor 2
chr15_-_23908605 0.03 ENSDART00000185578
usp32
ubiquitin specific peptidase 32
chr1_+_26676758 0.03 ENSDART00000152299
si:dkey-25o16.4
si:dkey-25o16.4
chr14_-_47314011 0.03 ENSDART00000178523
fstl5
follistatin-like 5
chr9_+_55321322 0.03 ENSDART00000111111
ENSDART00000191579
nlgn4b
neuroligin 4b
chr19_+_42047427 0.02 ENSDART00000180225
ENSDART00000145356
si:ch211-13c6.2
si:ch211-13c6.2
chr18_+_27001115 0.02 ENSDART00000133547
pik3c2a
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha
chr13_-_34862452 0.02 ENSDART00000134573
ENSDART00000047552
sptlc3
serine palmitoyltransferase, long chain base subunit 3
chr6_+_33537267 0.02 ENSDART00000040334
pik3r3b
phosphoinositide-3-kinase, regulatory subunit 3b (gamma)
chr21_+_44300689 0.02 ENSDART00000186298
ENSDART00000142810
gabra3
gamma-aminobutyric acid (GABA) A receptor, alpha 3
chr11_+_13223625 0.02 ENSDART00000161275
abcb11b
ATP-binding cassette, sub-family B (MDR/TAP), member 11b
chr21_+_40239192 0.02 ENSDART00000135857
or115-9
odorant receptor, family F, subfamily 115, member 9
chr16_+_47428721 0.01 ENSDART00000180597
ENSDART00000032309
slc25a32b
solute carrier family 25 (mitochondrial folate carrier), member 32b
chr2_-_9971609 0.01 ENSDART00000137924
ENSDART00000048655
ENSDART00000131613
zgc:55943
zgc:55943
chr16_-_25519762 0.01 ENSDART00000146479
ENSDART00000142062
dtnbp1a
dystrobrevin binding protein 1a
chr24_+_39227519 0.01 ENSDART00000184611
ENSDART00000193494
ENSDART00000190728
ENSDART00000168705
MPRIP
si:ch73-103b11.2
chr5_-_25236340 0.01 ENSDART00000162774
abca2
ATP-binding cassette, sub-family A (ABC1), member 2
chr3_+_57788761 0.01 ENSDART00000149741
si:ch73-362i18.1
si:ch73-362i18.1
chr14_-_45702721 0.01 ENSDART00000165727
si:dkey-226n24.1
si:dkey-226n24.1
chr8_-_11835607 0.01 ENSDART00000183601
rapgef1a
Rap guanine nucleotide exchange factor (GEF) 1a
chr7_-_20796935 0.01 ENSDART00000162357
dnajc3b
DnaJ (Hsp40) homolog, subfamily C, member 3b
chr8_+_10835456 0.01 ENSDART00000151388
mapk13
mitogen-activated protein kinase 13
chr1_+_58205904 0.01 ENSDART00000147324
si:dkey-222h21.12
si:dkey-222h21.12
chr24_-_27436319 0.01 ENSDART00000171489
si:dkey-25o1.7
si:dkey-25o1.7
chr8_+_31821396 0.01 ENSDART00000077053
plcxd3
phosphatidylinositol-specific phospholipase C, X domain containing 3
chr21_+_40225915 0.00 ENSDART00000048475
ENSDART00000174122
or115-12
odorant receptor, family F, subfamily 115, member 12
chr14_-_2355833 0.00 ENSDART00000157677
PCDHGC3 (1 of many)
si:ch73-233f7.6
chr17_-_20717845 0.00 ENSDART00000150037
ank3b
ankyrin 3b
chr6_-_16493516 0.00 ENSDART00000022499
psmb3
proteasome subunit beta 3
chr12_+_32368574 0.00 ENSDART00000086389
ANKFN1
si:ch211-277e21.2

Network of associatons between targets according to the STRING database.

First level regulatory network of phox2ba

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0021563 glossopharyngeal nerve development(GO:0021563)
0.0 0.1 GO:1903292 protein localization to Golgi membrane(GO:1903292)
0.0 0.1 GO:0046351 sucrose metabolic process(GO:0005985) sucrose biosynthetic process(GO:0005986) disaccharide biosynthetic process(GO:0046351)
0.0 0.1 GO:1990481 mRNA pseudouridine synthesis(GO:1990481)
0.0 0.2 GO:0060217 hemangioblast cell differentiation(GO:0060217)
0.0 0.0 GO:1903358 regulation of Golgi organization(GO:1903358)
0.0 0.1 GO:0051988 regulation of attachment of spindle microtubules to kinetochore(GO:0051988)
0.0 0.1 GO:0006685 sphingomyelin catabolic process(GO:0006685)
0.0 0.2 GO:0008535 respiratory chain complex IV assembly(GO:0008535)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.0 GO:0090443 FAR/SIN/STRIPAK complex(GO:0090443)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0016743 carboxyl- or carbamoyltransferase activity(GO:0016743)
0.0 0.1 GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity(GO:0042132)