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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for pou4f2

Z-value: 0.28

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Transcription factors associated with pou4f2

Gene Symbol Gene ID Gene Info
pou4f2
ENSDARG00000069737 POU class 4 homeobox 2

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
pou4f2dr11_v1_chr1_+_36436936_364369360.321.9e-01Click!

Activity profile of pou4f2 motif

Sorted Z-values of pou4f2 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr12_+_24952902 0.56 ENSDART00000189086
ENSDART00000014868
calm3a
calmodulin 3a (phosphorylase kinase, delta)
chr25_-_16581233 0.46 ENSDART00000155312
smc1b
structural maintenance of chromosomes 1B
chr21_+_36623162 0.37 ENSDART00000027459
grk6
G protein-coupled receptor kinase 6
chr1_-_55270966 0.37 ENSDART00000152807
si:ch211-286b5.5
si:ch211-286b5.5
chr4_-_1801519 0.31 ENSDART00000188604
ENSDART00000135749
nudt4b
nudix (nucleoside diphosphate linked moiety X)-type motif 4b
chr5_+_42381273 0.29 ENSDART00000142387
pimr58
Pim proto-oncogene, serine/threonine kinase, related 58
chr24_-_21923930 0.28 ENSDART00000131944
tagln3b
transgelin 3b
chr13_-_42400647 0.25 ENSDART00000043069
march5
membrane-associated ring finger (C3HC4) 5
chr11_-_2478374 0.25 ENSDART00000173205
si:ch73-267c23.10
si:ch73-267c23.10
chr10_-_35103208 0.25 ENSDART00000192734
zgc:110006
zgc:110006
chr5_-_38155005 0.24 ENSDART00000097770
gucy2d
guanylate cyclase 2D, retinal
chr7_+_73630751 0.23 ENSDART00000159745
PCP4L1
si:dkey-46i9.1
chr17_+_15433518 0.23 ENSDART00000026180
fabp7a
fatty acid binding protein 7, brain, a
chr12_-_35830625 0.23 ENSDART00000180028
CU459056.1

chr19_-_31402429 0.22 ENSDART00000137292
tmem106bb
transmembrane protein 106Bb
chr2_-_40135942 0.22 ENSDART00000176951
ENSDART00000098632
ENSDART00000148563
ENSDART00000149895
epha4a
eph receptor A4a
chr17_+_15433671 0.21 ENSDART00000149568
fabp7a
fatty acid binding protein 7, brain, a
chr7_+_32369026 0.20 ENSDART00000169588
lgr4
leucine-rich repeat containing G protein-coupled receptor 4
chr1_-_17715493 0.20 ENSDART00000133027
si:dkey-256e7.8
si:dkey-256e7.8
chr8_+_52314542 0.19 ENSDART00000013059
ENSDART00000125241
dbnlb
drebrin-like b
chr23_-_28141419 0.17 ENSDART00000133039
tac3a
tachykinin 3a
chr8_+_17167876 0.17 ENSDART00000134665
cenph
centromere protein H
chr10_+_39084354 0.17 ENSDART00000158245
si:ch73-1a9.3
si:ch73-1a9.3
chr12_-_10409961 0.16 ENSDART00000149521
ENSDART00000052001
eef2k
eukaryotic elongation factor 2 kinase
chr24_+_26432541 0.16 ENSDART00000105784
ENSDART00000122554
cldn11b
claudin 11b
chr19_+_1688727 0.15 ENSDART00000115136
ENSDART00000166744
dennd3a
DENN/MADD domain containing 3a
chr18_+_2228737 0.15 ENSDART00000165301
rab27a
RAB27A, member RAS oncogene family
chr8_-_13454281 0.15 ENSDART00000141959
CR354547.2

chr22_-_13042992 0.15 ENSDART00000028787
ahr1b
aryl hydrocarbon receptor 1b
chr25_-_13842618 0.15 ENSDART00000160258
mapk8ip1a
mitogen-activated protein kinase 8 interacting protein 1a
chr25_+_6186823 0.15 ENSDART00000153526
oaz2a
ornithine decarboxylase antizyme 2a
chr8_+_44714336 0.14 ENSDART00000145801
elmod3
ELMO/CED-12 domain containing 3
chr4_+_11695979 0.14 ENSDART00000137736
mkln1
muskelin 1, intracellular mediator containing kelch motifs
chr16_+_11242443 0.13 ENSDART00000024935
gsk3ab
glycogen synthase kinase 3 alpha b
chr6_+_54187643 0.13 ENSDART00000056830
pacsin1b
protein kinase C and casein kinase substrate in neurons 1b
chr20_+_41756996 0.12 ENSDART00000186393
fam184a
family with sequence similarity 184, member A
chr1_+_144284 0.12 ENSDART00000064061
prozb
protein Z, vitamin K-dependent plasma glycoprotein b
chr13_-_33194647 0.12 ENSDART00000134383
trip11
thyroid hormone receptor interactor 11
chr5_+_51443009 0.11 ENSDART00000083350
rasgrf2b
Ras protein-specific guanine nucleotide-releasing factor 2b
chr1_+_10318089 0.11 ENSDART00000029774
pip4p1b
phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1b
chr8_+_8927870 0.11 ENSDART00000081985
pim2
Pim-2 proto-oncogene, serine/threonine kinase
chr8_+_16025554 0.11 ENSDART00000110171
elavl4
ELAV like neuron-specific RNA binding protein 4
chr7_+_19552381 0.11 ENSDART00000169060
si:ch211-212k18.5
si:ch211-212k18.5
chr16_-_20932896 0.11 ENSDART00000180646
tax1bp1b
Tax1 (human T-cell leukemia virus type I) binding protein 1b
chr4_-_1360495 0.10 ENSDART00000164623
ptn
pleiotrophin
chr7_-_7764287 0.10 ENSDART00000173021
ENSDART00000113131
intu
inturned planar cell polarity protein
chr5_+_44064764 0.10 ENSDART00000143843
si:dkey-84j12.1
si:dkey-84j12.1
chr18_-_48550426 0.09 ENSDART00000145189
kcnj1a.1
potassium inwardly-rectifying channel, subfamily J, member 1a, tandem duplicate 1
chr6_+_39184236 0.09 ENSDART00000156187
tac3b
tachykinin 3b
chr11_-_45138857 0.09 ENSDART00000166501
cant1b
calcium activated nucleotidase 1b
chr5_+_17624463 0.09 ENSDART00000183869
ENSDART00000081064
fbrsl1
fibrosin-like 1
chr3_+_45687266 0.09 ENSDART00000131652
gpr146
G protein-coupled receptor 146
chr6_+_27146671 0.09 ENSDART00000156792
kif1aa
kinesin family member 1Aa
chr16_-_12173554 0.09 ENSDART00000110567
ENSDART00000155935
clstn3
calsyntenin 3
chr18_-_15551360 0.09 ENSDART00000159915
ENSDART00000172690
ppfibp1b
PTPRF interacting protein, binding protein 1b (liprin beta 1)
chr5_-_72415578 0.09 ENSDART00000029014
pax8
paired box 8
chr11_-_3860534 0.09 ENSDART00000082425
gata2a
GATA binding protein 2a
chr3_-_61362398 0.09 ENSDART00000156177
si:dkey-111k8.3
si:dkey-111k8.3
chr14_+_45883687 0.09 ENSDART00000114790
flrt1b
fibronectin leucine rich transmembrane protein 1b
chr11_-_3860199 0.08 ENSDART00000082420
gata2a
GATA binding protein 2a
chr17_-_49438873 0.08 ENSDART00000004424
znf292a
zinc finger protein 292a
chr1_-_50859053 0.08 ENSDART00000132779
ENSDART00000137648
si:dkeyp-123h10.2
si:dkeyp-123h10.2
chr1_+_25801648 0.08 ENSDART00000129471
gucy1b1
guanylate cyclase 1 soluble subunit beta 1
chr18_-_1185772 0.08 ENSDART00000143245
nptnb
neuroplastin b
chr3_-_23406964 0.08 ENSDART00000114723
rapgefl1
Rap guanine nucleotide exchange factor (GEF)-like 1
chr16_+_29303971 0.08 ENSDART00000087149
hapln2
hyaluronan and proteoglycan link protein 2
chr23_+_41912151 0.08 ENSDART00000191115
podn
podocan
chr22_-_347424 0.08 ENSDART00000067633
necap2
NECAP endocytosis associated 2
chr17_+_11675362 0.07 ENSDART00000157911
kif26ba
kinesin family member 26Ba
chr14_-_7306983 0.07 ENSDART00000158914
si:ch211-51f19.1
si:ch211-51f19.1
chr23_+_1276006 0.07 ENSDART00000162294
utrn
utrophin
chr13_+_35339182 0.07 ENSDART00000019323
jag1b
jagged 1b
chr16_-_12173399 0.07 ENSDART00000142574
clstn3
calsyntenin 3
chr14_+_28486213 0.07 ENSDART00000161852
stag2b
stromal antigen 2b
chr21_+_43328685 0.07 ENSDART00000109620
ENSDART00000139668
sept8a
septin 8a
chr21_-_7035599 0.07 ENSDART00000139777
si:ch211-93g21.1
si:ch211-93g21.1
chr20_-_52705325 0.06 ENSDART00000136807
ENSDART00000136126
si:ch211-221n20.7
si:ch211-221n20.7
chr8_+_17884569 0.06 ENSDART00000134660
slc44a5b
solute carrier family 44, member 5b
chr9_-_23944470 0.06 ENSDART00000138754
col6a3
collagen, type VI, alpha 3
chr11_+_1575435 0.06 ENSDART00000155713
ENSDART00000156562
si:dkey-40c23.1
si:dkey-40c23.1
chr19_+_9459050 0.06 ENSDART00000186419
si:ch211-288g17.3
si:ch211-288g17.3
chr17_+_26965351 0.05 ENSDART00000114215
ENSDART00000147192
grhl3
grainyhead-like transcription factor 3
chr9_+_21793565 0.05 ENSDART00000134915
rev1
REV1, polymerase (DNA directed)
chr11_-_31226578 0.05 ENSDART00000109698
nacc1b
nucleus accumbens associated 1, BEN and BTB (POZ) domain containing b
chr11_-_37509001 0.05 ENSDART00000109753
bsnb
bassoon (presynaptic cytomatrix protein) b
chr2_-_21082695 0.05 ENSDART00000032502
nebl
nebulette
chr21_-_20733615 0.05 ENSDART00000145544
si:ch211-22d5.2
si:ch211-22d5.2
chr18_-_2433011 0.05 ENSDART00000181922
ENSDART00000193276
CR769778.1

chr8_+_17069577 0.04 ENSDART00000131847
si:dkey-190g11.3
si:dkey-190g11.3
chr4_-_9836342 0.04 ENSDART00000150519
ttc41
tetratricopeptide repeat domain 41
chr17_+_8183393 0.04 ENSDART00000155957
tulp4b
tubby like protein 4b
chr17_+_28706946 0.04 ENSDART00000126967
strn3
striatin, calmodulin binding protein 3
chr13_+_36622100 0.04 ENSDART00000133198
si:ch211-67f24.7
si:ch211-67f24.7
chr4_+_2637947 0.04 ENSDART00000130623
dus4l
dihydrouridine synthase 4-like (S. cerevisiae)
chr21_-_40348790 0.04 ENSDART00000178123
CR847523.1

chr14_-_31465905 0.04 ENSDART00000173108
gpc3
glypican 3
chr10_+_36178713 0.03 ENSDART00000140816
or108-3
odorant receptor, family D, subfamily 108, member 3
chr11_+_44502410 0.03 ENSDART00000172998
ero1b
endoplasmic reticulum oxidoreductase beta
chr7_+_25915089 0.03 ENSDART00000173648
hmgb3a
high mobility group box 3a
chr16_-_26074529 0.03 ENSDART00000148653
ENSDART00000148923
tmem145
transmembrane protein 145
chr3_-_58798377 0.03 ENSDART00000161248
si:ch73-281f12.4
si:ch73-281f12.4
chr11_-_42918971 0.03 ENSDART00000052912
pcdh20
protocadherin 20
chr20_+_18325556 0.03 ENSDART00000123559
znf521
zinc finger protein 521
chr13_+_22476742 0.03 ENSDART00000078759
ENSDART00000130101
ENSDART00000137220
ENSDART00000133065
ENSDART00000147348
ldb3a
LIM domain binding 3a
chr15_-_41744509 0.03 ENSDART00000176952
ENSDART00000156690
ftr88
finTRIM family, member 88
chr17_+_26352372 0.03 ENSDART00000155177
grid1a
glutamate receptor, ionotropic, delta 1a
chr18_-_40509006 0.03 ENSDART00000021372
chrna5
cholinergic receptor, nicotinic, alpha 5
chr3_-_58798815 0.02 ENSDART00000082920
si:ch73-281f12.4
si:ch73-281f12.4
chr7_+_25059845 0.02 ENSDART00000077215
ppp2r5b
protein phosphatase 2, regulatory subunit B', beta
chr4_-_28335184 0.02 ENSDART00000178149
ENSDART00000043737
celsr1a
cadherin EGF LAG seven-pass G-type receptor 1a
chr3_+_56276346 0.02 ENSDART00000157770
PRKCA
si:ch73-374l24.1
chr19_-_32641725 0.02 ENSDART00000165006
ENSDART00000188185
hpca
hippocalcin
chr14_+_46287296 0.02 ENSDART00000183620
cabp2b
calcium binding protein 2b
chr19_+_42470396 0.02 ENSDART00000191679
si:dkey-166k12.1
si:dkey-166k12.1
chr12_-_35787801 0.02 ENSDART00000171682
aatkb
apoptosis-associated tyrosine kinase b
chr6_+_4033832 0.02 ENSDART00000159952
sema5bb
sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5Bb
chr1_-_38195012 0.02 ENSDART00000020409
hand2
heart and neural crest derivatives expressed 2
chr14_-_32959851 0.02 ENSDART00000075157
chic1
cysteine-rich hydrophobic domain 1
chr21_+_28958471 0.02 ENSDART00000144331
ENSDART00000005929
ppp3ca
protein phosphatase 3, catalytic subunit, alpha isozyme
chr10_-_17159761 0.01 ENSDART00000080449
slc5a1
solute carrier family 5 (sodium/glucose cotransporter), member 1
chr11_+_3585934 0.01 ENSDART00000055694
cdab
cytidine deaminase b
chr11_+_38280454 0.01 ENSDART00000171496
CDK18
si:dkey-166c18.1
chr2_+_36939749 0.01 ENSDART00000005382
gadd45bb
growth arrest and DNA-damage-inducible, beta b
chr9_-_32753535 0.01 ENSDART00000060006
olig2
oligodendrocyte lineage transcription factor 2
chr13_+_31180084 0.01 ENSDART00000133774
ptpn20
protein tyrosine phosphatase, non-receptor type 20
chr5_-_68782641 0.01 ENSDART00000141699
mepce
methylphosphate capping enzyme
chr5_-_63515210 0.01 ENSDART00000022348
prdm12b
PR domain containing 12b
chr3_-_32169754 0.00 ENSDART00000179010
tnnt1
troponin T type 1 (skeletal, slow)
chr3_+_33341640 0.00 ENSDART00000186352
pyya
peptide YYa
chr7_-_33960170 0.00 ENSDART00000180766
skor1a
SKI family transcriptional corepressor 1a
chr9_+_29430432 0.00 ENSDART00000125632
uggt2
UDP-glucose glycoprotein glucosyltransferase 2
chr24_-_40700596 0.00 ENSDART00000162635
smyhc2
slow myosin heavy chain 2

Network of associatons between targets according to the STRING database.

First level regulatory network of pou4f2

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:1901907 diphosphoinositol polyphosphate metabolic process(GO:0071543) diadenosine pentaphosphate metabolic process(GO:1901906) diadenosine pentaphosphate catabolic process(GO:1901907) diadenosine hexaphosphate metabolic process(GO:1901908) diadenosine hexaphosphate catabolic process(GO:1901909) adenosine 5'-(hexahydrogen pentaphosphate) metabolic process(GO:1901910) adenosine 5'-(hexahydrogen pentaphosphate) catabolic process(GO:1901911)
0.1 0.2 GO:1902895 pri-miRNA transcription from RNA polymerase II promoter(GO:0061614) regulation of pri-miRNA transcription from RNA polymerase II promoter(GO:1902893) positive regulation of pri-miRNA transcription from RNA polymerase II promoter(GO:1902895)
0.1 0.3 GO:0007217 tachykinin receptor signaling pathway(GO:0007217)
0.0 0.2 GO:0098974 postsynaptic actin cytoskeleton organization(GO:0098974)
0.0 0.2 GO:0021888 hypothalamus gonadotrophin-releasing hormone neuron differentiation(GO:0021886) hypothalamus gonadotrophin-releasing hormone neuron development(GO:0021888)
0.0 0.2 GO:0003404 optic vesicle morphogenesis(GO:0003404)
0.0 0.2 GO:0060999 positive regulation of dendritic spine development(GO:0060999)
0.0 0.1 GO:0099543 trans-synaptic signaling by soluble gas(GO:0099543) trans-synaptic signaling by nitric oxide(GO:0099548)
0.0 0.2 GO:0051965 positive regulation of synapse assembly(GO:0051965)
0.0 0.5 GO:0007064 mitotic sister chromatid cohesion(GO:0007064)
0.0 0.1 GO:1900006 positive regulation of dendrite development(GO:1900006)
0.0 0.1 GO:0070987 error-free translesion synthesis(GO:0070987)
0.0 0.2 GO:0006658 phosphatidylserine metabolic process(GO:0006658)
0.0 0.2 GO:0032418 lysosome localization(GO:0032418)
0.0 0.2 GO:0032483 regulation of Rab protein signal transduction(GO:0032483)
0.0 0.2 GO:0061300 cerebellum vasculature development(GO:0061300)
0.0 0.2 GO:0051382 kinetochore assembly(GO:0051382)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.5 GO:0030893 meiotic cohesin complex(GO:0030893)
0.0 0.4 GO:0031680 G-protein beta/gamma-subunit complex(GO:0031680)
0.0 0.2 GO:0002102 podosome(GO:0002102)
0.0 0.1 GO:0034751 aryl hydrocarbon receptor complex(GO:0034751)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0000298 endopolyphosphatase activity(GO:0000298) diphosphoinositol-polyphosphate diphosphatase activity(GO:0008486) bis(5'-adenosyl)-hexaphosphatase activity(GO:0034431) bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.0 0.1 GO:0008073 ornithine decarboxylase inhibitor activity(GO:0008073)
0.0 0.4 GO:0005504 fatty acid binding(GO:0005504)
0.0 0.4 GO:0004703 G-protein coupled receptor kinase activity(GO:0004703)
0.0 0.2 GO:0043515 kinetochore binding(GO:0043515)
0.0 0.3 GO:0004383 guanylate cyclase activity(GO:0004383)
0.0 0.4 GO:0031681 G-protein beta-subunit binding(GO:0031681)
0.0 0.2 GO:0016500 protein-hormone receptor activity(GO:0016500)
0.0 0.1 GO:0034597 phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity(GO:0034597)
0.0 0.2 GO:0005005 transmembrane-ephrin receptor activity(GO:0005005)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 PID CONE PATHWAY Visual signal transduction: Cones
0.0 0.2 PID P38 GAMMA DELTA PATHWAY Signaling mediated by p38-gamma and p38-delta

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 REACTOME MTORC1 MEDIATED SIGNALLING Genes involved in mTORC1-mediated signalling
0.0 0.5 REACTOME MEIOTIC SYNAPSIS Genes involved in Meiotic Synapsis
0.0 0.2 REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere