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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for prdm14

Z-value: 0.36

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Transcription factors associated with prdm14

Gene Symbol Gene ID Gene Info
prdm14
ENSDARG00000045371 PR domain containing 14

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
prdm14dr11_v1_chr24_+_14451404_14451404-0.753.4e-04Click!

Activity profile of prdm14 motif

Sorted Z-values of prdm14 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr7_+_34794829 0.98 ENSDART00000009698
ENSDART00000075089
ENSDART00000173456
esrp2
epithelial splicing regulatory protein 2
chr20_+_51061695 0.98 ENSDART00000134416
im:7140055
im:7140055
chr5_+_37903790 0.93 ENSDART00000162470
tmprss4b
transmembrane protease, serine 4b
chr23_+_9522942 0.87 ENSDART00000137751
osbpl2b
oxysterol binding protein-like 2b
chr23_+_21261313 0.85 ENSDART00000104268
ENSDART00000159046
emc1
ER membrane protein complex subunit 1
chr14_+_35428152 0.80 ENSDART00000172597
sytl4
synaptotagmin-like 4
chr23_+_9522781 0.78 ENSDART00000136486
osbpl2b
oxysterol binding protein-like 2b
chr10_-_32877348 0.77 ENSDART00000018977
ENSDART00000133421
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1
chr1_+_46509176 0.68 ENSDART00000166028
mcf2la
mcf.2 cell line derived transforming sequence-like a
chr17_+_25871304 0.66 ENSDART00000185143
wapla
WAPL cohesin release factor a
chr17_+_12075805 0.60 ENSDART00000155329
cnsta
consortin, connexin sorting protein a
chr5_+_28271412 0.58 ENSDART00000031727
vamp8
vesicle-associated membrane protein 8 (endobrevin)
chr8_-_25716074 0.55 ENSDART00000007482
tspy
testis specific protein, Y-linked
chr9_-_34945566 0.52 ENSDART00000131908
ENSDART00000059861
dcun1d2a
DCN1, defective in cullin neddylation 1, domain containing 2a
chr13_+_49727333 0.52 ENSDART00000168799
ENSDART00000037559
ggps1
geranylgeranyl diphosphate synthase 1
chr11_+_31380495 0.48 ENSDART00000185073
sipa1l2
signal-induced proliferation-associated 1 like 2
chr21_-_14692119 0.46 ENSDART00000123047
ehmt1b
euchromatic histone-lysine N-methyltransferase 1b
chr20_-_4049862 0.44 ENSDART00000158057
sprtn
SprT-like N-terminal domain
chr8_+_47677208 0.42 ENSDART00000123254
dpp9
dipeptidyl-peptidase 9
chr21_-_27272657 0.42 ENSDART00000040754
ENSDART00000175009
mark2a
MAP/microtubule affinity-regulating kinase 2a
chr5_+_51833305 0.42 ENSDART00000165276
ENSDART00000166443
papd4
PAP associated domain containing 4
chr8_-_25566347 0.39 ENSDART00000138289
ENSDART00000078022
prex1
phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1
chr1_+_27690 0.38 ENSDART00000162928
eed
embryonic ectoderm development
chr17_+_30843881 0.35 ENSDART00000149600
ENSDART00000148547
tpp1
tripeptidyl peptidase I
chr2_-_32826108 0.35 ENSDART00000098834
prpf4ba
pre-mRNA processing factor 4Ba
chr5_-_69482891 0.34 ENSDART00000109487
CABZ01032476.1

chr2_-_37458527 0.34 ENSDART00000146820
si:dkey-57k2.7
si:dkey-57k2.7
chr5_+_51833132 0.32 ENSDART00000167491
papd4
PAP associated domain containing 4
chr17_+_27162367 0.32 ENSDART00000193345
rps6ka1
ribosomal protein S6 kinase a, polypeptide 1
chr9_+_8364553 0.31 ENSDART00000190713
si:dkey-90l23.2
si:dkey-90l23.2
chr5_-_67115872 0.30 ENSDART00000065262
rps6ka4
ribosomal protein S6 kinase, polypeptide 4
chr21_-_27273147 0.30 ENSDART00000143239
mark2a
MAP/microtubule affinity-regulating kinase 2a
chr23_-_27442544 0.30 ENSDART00000019521
dip2ba
disco-interacting protein 2 homolog Ba
chr22_-_20342260 0.26 ENSDART00000161610
ENSDART00000165667
tcf3b
transcription factor 3b
chr11_+_13642157 0.24 ENSDART00000060251
wdr18
WD repeat domain 18
chr7_+_13491452 0.22 ENSDART00000053535
arih1l
ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 like
chr16_+_32014552 0.19 ENSDART00000047570
mboat7
membrane bound O-acyltransferase domain containing 7
chr10_+_573667 0.19 ENSDART00000110384
smad4a
SMAD family member 4a
chr6_-_39919982 0.19 ENSDART00000065091
ENSDART00000064903
sumf1
sulfatase modifying factor 1
chr12_-_4435303 0.19 ENSDART00000159007
si:ch211-173d10.1
si:ch211-173d10.1
chr10_-_33343244 0.19 ENSDART00000164191
c2cd2
C2 calcium-dependent domain containing 2
chr23_+_5104743 0.19 ENSDART00000123191
ube2t
ubiquitin-conjugating enzyme E2T (putative)
chr7_+_51324834 0.16 ENSDART00000114429
usp12b
ubiquitin specific peptidase 12b
chr4_-_17353100 0.15 ENSDART00000134467
ENSDART00000189019
parpbp
PARP1 binding protein
chr15_-_34930727 0.14 ENSDART00000179723
dhx16
DEAH (Asp-Glu-Ala-His) box polypeptide 16
chr11_-_23080970 0.14 ENSDART00000127791
atp2b2
ATPase plasma membrane Ca2+ transporting 2
chr3_-_25268751 0.13 ENSDART00000139423
mgat3a
mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase a
chr13_+_18321140 0.13 ENSDART00000180947
eif4e1c
eukaryotic translation initiation factor 4E family member 1c
chr18_-_25646286 0.12 ENSDART00000099511
ENSDART00000186890
si:ch211-13k12.2
si:ch211-13k12.2
chr10_+_29849497 0.12 ENSDART00000099994
ENSDART00000132212
hspa8
heat shock protein 8
chr8_-_49285801 0.11 ENSDART00000113159
prickle3
prickle homolog 3
chr6_-_24384654 0.11 ENSDART00000164723
brdt
bromodomain, testis-specific
chr2_-_36819624 0.10 ENSDART00000140844
slitrk3b
SLIT and NTRK-like family, member 3b
chr11_-_23332592 0.09 ENSDART00000125024
golt1a
golgi transport 1A
chr24_+_26402110 0.07 ENSDART00000133684
si:ch211-230g15.5
si:ch211-230g15.5
chr24_-_30275735 0.07 ENSDART00000168723
snx7
sorting nexin 7
chr17_+_28675120 0.04 ENSDART00000159067
hectd1
HECT domain containing 1
chr6_-_24143923 0.04 ENSDART00000157948
si:ch73-389b16.1
si:ch73-389b16.1
chr22_+_16308806 0.04 ENSDART00000162685
lrrc39
leucine rich repeat containing 39
chr6_-_21534301 0.03 ENSDART00000126186
psmd12
proteasome 26S subunit, non-ATPase 12
chr12_+_39685485 0.03 ENSDART00000163403
LO017650.1

chr9_-_40073255 0.02 ENSDART00000189139
IKZF2
si:zfos-1425h8.1
chr20_-_46467280 0.02 ENSDART00000060702
rmdn3
regulator of microtubule dynamics 3
chr15_-_37674120 0.02 ENSDART00000059568
si:ch211-137j23.6
si:ch211-137j23.6
chr21_-_43949208 0.01 ENSDART00000150983
camk2a
calcium/calmodulin-dependent protein kinase II alpha
chr20_+_22220988 0.01 ENSDART00000049204
kdr
kinase insert domain receptor (a type III receptor tyrosine kinase)
chr22_-_9890386 0.01 ENSDART00000132304
si:dkey-253d23.5
si:dkey-253d23.5
chr13_+_4871886 0.01 ENSDART00000132301
micu1
mitochondrial calcium uptake 1
chr4_+_77681389 0.01 ENSDART00000099727
gbp4
guanylate binding protein 4
chr22_+_2680895 0.01 ENSDART00000082245
zgc:194221
zgc:194221
chr7_-_17780048 0.01 ENSDART00000183336
si:dkey-106g10.7
si:dkey-106g10.7
chr11_+_13159988 0.00 ENSDART00000064176
mob3c
MOB kinase activator 3C
chr18_+_44768829 0.00 ENSDART00000016271
ilvbl
ilvB (bacterial acetolactate synthase)-like
chr12_-_36268723 0.00 ENSDART00000113740
kcnj16
potassium inwardly-rectifying channel, subfamily J, member 16

Network of associatons between targets according to the STRING database.

First level regulatory network of prdm14

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0060623 regulation of chromosome condensation(GO:0060623)
0.2 0.6 GO:0042998 positive regulation of Golgi to plasma membrane protein transport(GO:0042998) positive regulation of establishment of protein localization to plasma membrane(GO:0090004)
0.1 0.6 GO:0070254 mucus secretion(GO:0070254)
0.1 0.4 GO:0042769 DNA damage response, detection of DNA damage(GO:0042769)
0.0 0.3 GO:0016572 histone phosphorylation(GO:0016572)
0.0 0.2 GO:0036149 phosphatidylinositol acyl-chain remodeling(GO:0036149)
0.0 0.1 GO:0051037 histone displacement(GO:0001207) regulation of transcription involved in meiotic cell cycle(GO:0051037) positive regulation of transcription involved in meiotic cell cycle(GO:0051039)
0.0 0.5 GO:0045116 protein neddylation(GO:0045116) positive regulation of ubiquitin-protein transferase activity(GO:0051443)
0.0 0.3 GO:2000758 positive regulation of protein acetylation(GO:1901985) positive regulation of peptidyl-lysine acetylation(GO:2000758)
0.0 0.1 GO:2000042 negative regulation of double-strand break repair via homologous recombination(GO:2000042)
0.0 0.1 GO:0048260 positive regulation of receptor-mediated endocytosis(GO:0048260) protein localization to early endosome(GO:1902946)
0.0 0.2 GO:0090329 regulation of DNA-dependent DNA replication(GO:0090329)
0.0 0.4 GO:0038092 nodal signaling pathway(GO:0038092)
0.0 0.5 GO:0008299 isoprenoid biosynthetic process(GO:0008299)
0.0 0.2 GO:0051865 protein autoubiquitination(GO:0051865)
0.0 0.8 GO:0016571 histone methylation(GO:0016571)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.8 GO:0072546 ER membrane protein complex(GO:0072546)
0.0 0.2 GO:0044233 ER-mitochondrion membrane contact site(GO:0044233)
0.0 0.4 GO:0035098 ESC/E(Z) complex(GO:0035098)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0071253 connexin binding(GO:0071253)
0.1 1.7 GO:0015248 sterol transporter activity(GO:0015248)
0.0 0.7 GO:0050321 tau-protein kinase activity(GO:0050321)
0.0 0.8 GO:0042043 neurexin family protein binding(GO:0042043)
0.0 0.3 GO:0004711 ribosomal protein S6 kinase activity(GO:0004711)
0.0 0.5 GO:0097602 cullin family protein binding(GO:0097602)
0.0 0.5 GO:0002039 p53 binding(GO:0002039)
0.0 0.4 GO:0008239 dipeptidyl-peptidase activity(GO:0008239)
0.0 0.5 GO:0004659 prenyltransferase activity(GO:0004659)
0.0 0.9 GO:0005044 scavenger receptor activity(GO:0005044)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.8 PID RAS PATHWAY Regulation of Ras family activation
0.0 0.7 SIG PIP3 SIGNALING IN B LYMPHOCYTES Genes related to PIP3 signaling in B lymphocytes

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 REACTOME ACYL CHAIN REMODELLING OF PI Genes involved in Acyl chain remodelling of PI
0.0 0.6 REACTOME RECYCLING PATHWAY OF L1 Genes involved in Recycling pathway of L1
0.0 0.7 REACTOME LYSOSOME VESICLE BIOGENESIS Genes involved in Lysosome Vesicle Biogenesis
0.0 0.5 REACTOME CHOLESTEROL BIOSYNTHESIS Genes involved in Cholesterol biosynthesis
0.0 0.2 REACTOME THE ACTIVATION OF ARYLSULFATASES Genes involved in The activation of arylsulfatases