Project
PRJNA438478: RNAseq of wild type zebrafish germline
Navigation
Downloads
Results for ptf1a+si:dkey-34f9.3
Z-value: 0.36
Motif logo
Transcription factors associated with ptf1a+si:dkey-34f9.3
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| si:dkey-34f9.3 | dr11_v1_chr9_+_45789887_45789887 | 0.62 | 5.9e-03 | Click! |
| ptf1a | dr11_v1_chr2_+_29710857_29710857 | 0.33 | 1.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr23_-_28692581 Show fit | 1.17 |
ENSDART00000078141
|
RIB43A domain with coiled-coils 1 |
|
| chr10_+_506538 Show fit | 1.09 |
ENSDART00000141713
|
si:ch211-242f23.3 |
|
| chr21_+_244503 Show fit | 1.00 |
ENSDART00000162889
|
StAR-related lipid transfer (START) domain containing 4 |
|
| chr12_+_18663154 Show fit | 0.80 |
ENSDART00000057918
|
si:ch211-147h1.4 |
|
| chr7_-_38644560 Show fit | 0.79 |
ENSDART00000114934
|
six-cysteine containing astacin protease 3 |
|
| chr25_-_15496485 Show fit | 0.67 |
ENSDART00000140245
|
si:dkeyp-67e1.6 |
|
| chr14_+_48964628 Show fit | 0.64 |
ENSDART00000105427
|
macrophage migration inhibitory factor |
|
| chr10_+_45059702 Show fit | 0.64 |
ENSDART00000166945
|
NudC domain containing 3 |
|
| chr1_+_57311901 Show fit | 0.62 |
ENSDART00000149397
|
mycbp associated protein |
|
| chr5_+_62723233 Show fit | 0.61 |
ENSDART00000183718
|
nanos homolog 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of ptf1a+si:dkey-34f9.3
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.0 | GO:0070508 | sterol import(GO:0035376) cholesterol import(GO:0070508) |
| 0.0 | 0.6 | GO:0043248 | proteasome assembly(GO:0043248) |
| 0.0 | 0.6 | GO:0060117 | auditory receptor cell development(GO:0060117) |
| 0.1 | 0.5 | GO:0051673 | membrane disruption in other organism(GO:0051673) |
| 0.0 | 0.5 | GO:0060294 | cilium movement involved in cell motility(GO:0060294) |
| 0.0 | 0.5 | GO:0070831 | basement membrane assembly(GO:0070831) |
| 0.1 | 0.4 | GO:0007217 | tachykinin receptor signaling pathway(GO:0007217) |
| 0.0 | 0.4 | GO:0097034 | mitochondrial respiratory chain complex IV assembly(GO:0033617) mitochondrial respiratory chain complex IV biogenesis(GO:0097034) |
| 0.1 | 0.3 | GO:0045649 | regulation of macrophage differentiation(GO:0045649) |
| 0.1 | 0.3 | GO:0010159 | specification of organ position(GO:0010159) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.6 | GO:0008540 | proteasome regulatory particle, base subcomplex(GO:0008540) |
| 0.0 | 0.5 | GO:0036126 | sperm flagellum(GO:0036126) |
| 0.0 | 0.4 | GO:0071014 | post-mRNA release spliceosomal complex(GO:0071014) |
| 0.0 | 0.4 | GO:0030992 | intraciliary transport particle B(GO:0030992) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.0 | GO:0015485 | cholesterol binding(GO:0015485) |
| 0.0 | 0.6 | GO:0031593 | polyubiquitin binding(GO:0031593) |
| 0.1 | 0.5 | GO:0050262 | ribosylnicotinamide kinase activity(GO:0050262) |
| 0.1 | 0.4 | GO:0031834 | neurokinin receptor binding(GO:0031834) substance P receptor binding(GO:0031835) |
| 0.1 | 0.3 | GO:0033829 | O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity(GO:0033829) |
| 0.1 | 0.3 | GO:0000026 | alpha-1,2-mannosyltransferase activity(GO:0000026) |
| 0.0 | 0.2 | GO:0005247 | voltage-gated chloride channel activity(GO:0005247) |
| 0.0 | 0.2 | GO:0003785 | actin monomer binding(GO:0003785) |
| 0.0 | 0.1 | GO:0004657 | proline dehydrogenase activity(GO:0004657) |
| 0.0 | 0.1 | GO:0008131 | primary amine oxidase activity(GO:0008131) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.3 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.0 | 0.3 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.0 | REACTOME METABOLISM OF STEROID HORMONES AND VITAMINS A AND D | Genes involved in Metabolism of steroid hormones and vitamins A and D |
| 0.0 | 0.3 | REACTOME INSULIN RECEPTOR RECYCLING | Genes involved in Insulin receptor recycling |
| 0.0 | 0.3 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |
| 0.0 | 0.3 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |