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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for snai1b+snai3

Z-value: 0.58

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Transcription factors associated with snai1b+snai3

Gene Symbol Gene ID Gene Info
snai3
ENSDARG00000031243 snail family zinc finger 3
snai1b
ENSDARG00000046019 snail family zinc finger 1b

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
snai1bdr11_v1_chr23_-_2513300_2513300-0.881.7e-06Click!
snai3dr11_v1_chr7_+_55112922_551129220.474.9e-02Click!

Activity profile of snai1b+snai3 motif

Sorted Z-values of snai1b+snai3 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr10_+_1052591 2.38 ENSDART00000123405
unc5c
unc-5 netrin receptor C
chr7_+_58751504 2.28 ENSDART00000024185
zgc:56231
zgc:56231
chr21_-_43666420 1.60 ENSDART00000139008
ENSDART00000183996
ENSDART00000183395
si:dkey-229d11.3
si:dkey-229d11.5
si:dkey-229d11.3
si:dkey-229d11.5
chr13_-_21672131 1.56 ENSDART00000067537
elovl6l
ELOVL family member 6, elongation of long chain fatty acids like
chr6_-_37749711 1.50 ENSDART00000078324
nipa1
non imprinted in Prader-Willi/Angelman syndrome 1
chr14_+_15155684 1.23 ENSDART00000167966
zgc:158852
zgc:158852
chr20_-_43743700 1.20 ENSDART00000100620
si:dkeyp-50f7.2
si:dkeyp-50f7.2
chr5_+_6670945 1.18 ENSDART00000185686
pxna
paxillin a
chr18_+_45666489 1.12 ENSDART00000180147
ENSDART00000151351
prrg4
proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)
chr17_+_1360192 1.08 ENSDART00000184561
siva1
SIVA1, apoptosis-inducing factor
chr5_-_23696926 1.05 ENSDART00000021462
rnf128a
ring finger protein 128a
chr21_-_35325466 1.01 ENSDART00000134780
ENSDART00000145930
ENSDART00000076715
ENSDART00000065341
ENSDART00000162189
ublcp1
ubiquitin-like domain containing CTD phosphatase 1
chr22_-_17677947 1.01 ENSDART00000139911
tjp3
tight junction protein 3
chr2_+_26237322 0.96 ENSDART00000030520
palm1b
paralemmin 1b
chr13_-_36525982 0.91 ENSDART00000114744
pacs2
phosphofurin acidic cluster sorting protein 2
chr10_+_37173029 0.91 ENSDART00000136510
ksr1a
kinase suppressor of ras 1a
chr12_+_16953415 0.84 ENSDART00000020824
pank1b
pantothenate kinase 1b
chr14_-_31087830 0.81 ENSDART00000002250
hs6st2
heparan sulfate 6-O-sulfotransferase 2
chr9_-_28255029 0.77 ENSDART00000160387
ccnyl1
cyclin Y-like 1
chr20_-_23426339 0.75 ENSDART00000004625
zar1
zygote arrest 1
chr13_+_2448251 0.74 ENSDART00000188361
arfgef3
ARFGEF family member 3
chr16_+_41060161 0.69 ENSDART00000141130
scap
SREBF chaperone
chr11_+_6902946 0.69 ENSDART00000144006
crtc1b
CREB regulated transcription coactivator 1b
chr15_+_784149 0.67 ENSDART00000155114
znf970
zinc finger protein 970
chr5_-_22052852 0.67 ENSDART00000002938
mtmr8
myotubularin related protein 8
chr18_+_6641542 0.66 ENSDART00000160379
c2cd5
C2 calcium-dependent domain containing 5
chr5_-_12031174 0.63 ENSDART00000159896
castor1
cytosolic arginine sensor for mTORC1 subunit 1
chr24_+_36018164 0.61 ENSDART00000182815
ENSDART00000126941
gnal2
guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type 2
chr11_-_43473824 0.59 ENSDART00000179561
tmem63bb
transmembrane protein 63Bb
chr6_-_10728921 0.58 ENSDART00000151484
sp3b
Sp3b transcription factor
chr13_+_2894536 0.57 ENSDART00000183678
CABZ01087629.1

chr7_-_30926030 0.49 ENSDART00000075421
sord
sorbitol dehydrogenase
chr13_-_39254 0.49 ENSDART00000093222
gtf2a1l
general transcription factor IIA, 1-like
chr17_+_24590177 0.44 ENSDART00000092941
rlf
rearranged L-myc fusion
chr6_-_10728057 0.43 ENSDART00000002247
sp3b
Sp3b transcription factor
chr1_+_10019653 0.42 ENSDART00000190227
trim2b
tripartite motif containing 2b
chr7_+_20917966 0.42 ENSDART00000129161
wrap53
WD repeat containing, antisense to TP53
chr10_-_38468847 0.41 ENSDART00000133914
gdpd5a
glycerophosphodiester phosphodiesterase domain containing 5a
chr14_-_15155384 0.41 ENSDART00000172666
uvssa
UV-stimulated scaffold protein A
chr22_+_22438783 0.40 ENSDART00000147825
kif14
kinesin family member 14
chr20_-_52902693 0.37 ENSDART00000166115
ENSDART00000161050
ctsbb
cathepsin Bb
chr14_-_26482096 0.37 ENSDART00000187280
smad5
SMAD family member 5
chr21_-_21465111 0.35 ENSDART00000141487
nectin3b
nectin cell adhesion molecule 3b
chr7_+_30988570 0.33 ENSDART00000180613
ENSDART00000185625
tjp1a
tight junction protein 1a
chr3_-_42016693 0.31 ENSDART00000184741
ttyh3a
tweety family member 3a
chr13_-_11800281 0.31 ENSDART00000079392
zmp:0000000662
zmp:0000000662
chr22_-_18546649 0.30 ENSDART00000171277
cirbpb
cold inducible RNA binding protein b
chr8_-_10949847 0.30 ENSDART00000123209
pqlc2
PQ loop repeat containing 2
chr1_-_55058795 0.26 ENSDART00000187293
peli1a
pellino E3 ubiquitin protein ligase 1a
chr20_-_21672970 0.26 ENSDART00000133286
si:ch211-207i1.2
si:ch211-207i1.2
chr17_+_50655619 0.25 ENSDART00000184917
ENSDART00000167638
ddhd1a
DDHD domain containing 1a
chr24_+_19578935 0.25 ENSDART00000137175
sulf1
sulfatase 1
chr13_+_35955562 0.25 ENSDART00000137377
si:ch211-67f13.7
si:ch211-67f13.7
chr19_+_142270 0.24 ENSDART00000160201
tnfrsf11b
tumor necrosis factor receptor superfamily, member 11b
chr15_-_434503 0.23 ENSDART00000122286
CABZ01056629.1

chr17_+_24936059 0.23 ENSDART00000082438
dlgap2a
discs, large (Drosophila) homolog-associated protein 2a
chr7_+_38962459 0.23 ENSDART00000173851
dgkza
diacylglycerol kinase, zeta a
chr8_+_20140321 0.23 ENSDART00000012120
acsbg2
acyl-CoA synthetase bubblegum family member 2
chr13_-_9119867 0.21 ENSDART00000137255
si:dkey-112g5.15
si:dkey-112g5.15
chr2_+_5948534 0.18 ENSDART00000124324
ENSDART00000176461
slc1a7a
solute carrier family 1 (glutamate transporter), member 7a
chr17_-_11151655 0.17 ENSDART00000156383
CU179699.1

chr8_+_247163 0.17 ENSDART00000122378
cep120
centrosomal protein 120
chr8_+_8196087 0.17 ENSDART00000026965
plxnb3
plexin B3
chr20_-_9436521 0.16 ENSDART00000133000
zgc:101840
zgc:101840
chr12_-_2869565 0.15 ENSDART00000152772
zdhhc16b
zinc finger, DHHC-type containing 16b
chr3_+_14641962 0.15 ENSDART00000091070
zgc:158403
zgc:158403
chr22_-_3595439 0.14 ENSDART00000083308
ptprsa
protein tyrosine phosphatase, receptor type, s, a
chr5_-_65159258 0.14 ENSDART00000160429
sh2d3cb
SH2 domain containing 3Cb
chr12_+_48784731 0.13 ENSDART00000158348
zmiz1b
zinc finger, MIZ-type containing 1b
chr3_+_23029934 0.12 ENSDART00000110343
nags
N-acetylglutamate synthase
chr1_-_43892349 0.12 ENSDART00000148416
tacr3a
tachykinin receptor 3a
chr7_+_42328578 0.10 ENSDART00000149082
phkb
phosphorylase kinase, beta
chr10_-_94184 0.08 ENSDART00000146125
ttc3
tetratricopeptide repeat domain 3
chr2_-_42628028 0.08 ENSDART00000179866
myo10
myosin X
chr4_+_54645654 0.06 ENSDART00000192864
si:ch211-227e10.1
si:ch211-227e10.1
chr4_-_36476889 0.05 ENSDART00000163956
si:ch211-263l8.1
si:ch211-263l8.1
chr18_-_5781922 0.03 ENSDART00000128722
RGS9BP
si:ch73-167i17.6
chr2_-_722156 0.03 ENSDART00000045770
ENSDART00000169498
foxq1a
forkhead box Q1a
chr14_+_34514336 0.02 ENSDART00000024440
foxi3b
forkhead box I3b
chr7_-_58867188 0.02 ENSDART00000187006
CU681855.1

chr12_-_46112892 0.01 ENSDART00000187128
ENSDART00000114268
zgc:153932
zgc:153932
chr10_+_24445698 0.01 ENSDART00000146370
slc7a1
solute carrier family 7 (cationic amino acid transporter, y+ system), member 1
chr4_-_16341801 0.00 ENSDART00000140190
kera
keratocan
chr1_+_524717 0.00 ENSDART00000102421
ENSDART00000184473
mrpl16
mitochondrial ribosomal protein L16

Network of associatons between targets according to the STRING database.

First level regulatory network of snai1b+snai3

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 2.4 GO:0038007 netrin-activated signaling pathway(GO:0038007)
0.2 0.8 GO:1904031 positive regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045737) positive regulation of cyclin-dependent protein kinase activity(GO:1904031)
0.1 0.7 GO:0010828 positive regulation of glucose transport(GO:0010828)
0.1 0.6 GO:0007191 adenylate cyclase-activating dopamine receptor signaling pathway(GO:0007191)
0.1 1.0 GO:0030104 water homeostasis(GO:0030104)
0.1 0.7 GO:0032793 positive regulation of CREB transcription factor activity(GO:0032793)
0.1 1.4 GO:0061055 myotome development(GO:0061055)
0.1 1.5 GO:0015693 magnesium ion transport(GO:0015693)
0.1 0.4 GO:0030576 nuclear body organization(GO:0030575) Cajal body organization(GO:0030576)
0.1 0.7 GO:0015015 heparan sulfate proteoglycan biosynthetic process, enzymatic modification(GO:0015015)
0.1 1.6 GO:0034626 fatty acid elongation, saturated fatty acid(GO:0019367) fatty acid elongation, unsaturated fatty acid(GO:0019368) fatty acid elongation, monounsaturated fatty acid(GO:0034625) fatty acid elongation, polyunsaturated fatty acid(GO:0034626)
0.1 0.5 GO:0019405 alditol catabolic process(GO:0019405)
0.1 0.8 GO:0015937 coenzyme A biosynthetic process(GO:0015937)
0.1 0.4 GO:0006283 transcription-coupled nucleotide-excision repair(GO:0006283)
0.1 0.7 GO:0006991 response to sterol depletion(GO:0006991) SREBP signaling pathway(GO:0032933) cellular response to sterol depletion(GO:0071501)
0.1 0.3 GO:0008592 regulation of Toll signaling pathway(GO:0008592)
0.0 0.4 GO:0035188 hatching(GO:0035188) organism emergence from protective structure(GO:0071684)
0.0 0.2 GO:0010825 positive regulation of centrosome duplication(GO:0010825)
0.0 0.6 GO:1904262 negative regulation of TORC1 signaling(GO:1904262)
0.0 0.1 GO:0006526 arginine biosynthetic process(GO:0006526)
0.0 0.3 GO:0036060 filtration diaphragm assembly(GO:0036058) slit diaphragm assembly(GO:0036060)
0.0 0.7 GO:0010507 negative regulation of autophagy(GO:0010507)
0.0 0.4 GO:2000223 regulation of BMP signaling pathway involved in heart jogging(GO:2000223)
0.0 0.3 GO:0048026 positive regulation of mRNA splicing, via spliceosome(GO:0048026)
0.0 0.1 GO:1902093 positive regulation of sperm motility(GO:1902093)
0.0 0.7 GO:0032012 ARF protein signal transduction(GO:0032011) regulation of ARF protein signal transduction(GO:0032012)
0.0 0.3 GO:0007339 binding of sperm to zona pellucida(GO:0007339) egg coat formation(GO:0035803) regulation of acrosome reaction(GO:0060046) positive regulation of acrosome reaction(GO:2000344)
0.0 0.2 GO:0098962 regulation of postsynaptic neurotransmitter receptor activity(GO:0098962)
0.0 0.2 GO:0042759 long-chain fatty acid biosynthetic process(GO:0042759)
0.0 0.4 GO:0007286 spermatid development(GO:0007286)
0.0 0.5 GO:0006367 transcription initiation from RNA polymerase II promoter(GO:0006367)
0.0 0.1 GO:0099560 synaptic membrane adhesion(GO:0099560)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0005672 transcription factor TFIIA complex(GO:0005672)
0.1 0.6 GO:0061700 GATOR2 complex(GO:0061700)
0.0 2.7 GO:0005871 kinesin complex(GO:0005871)
0.0 0.4 GO:0015030 Cajal body(GO:0015030)
0.0 0.7 GO:0012507 ER to Golgi transport vesicle membrane(GO:0012507)
0.0 0.4 GO:0071144 SMAD2-SMAD3 protein complex(GO:0071144)
0.0 0.1 GO:0097225 sperm midpiece(GO:0097225)
0.0 0.3 GO:0005640 nuclear outer membrane(GO:0005640)
0.0 1.7 GO:0043296 apical junction complex(GO:0043296)
0.0 1.6 GO:0030176 integral component of endoplasmic reticulum membrane(GO:0030176)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.8 GO:0034618 arginine binding(GO:0034618)
0.2 2.4 GO:0005042 netrin receptor activity(GO:0005042)
0.1 0.8 GO:0004594 pantothenate kinase activity(GO:0004594)
0.1 0.7 GO:0017095 heparan sulfate 6-O-sulfotransferase activity(GO:0017095)
0.1 0.7 GO:0008140 cAMP response element binding protein binding(GO:0008140)
0.1 1.5 GO:0015095 magnesium ion transmembrane transporter activity(GO:0015095)
0.1 1.6 GO:0102337 fatty acid elongase activity(GO:0009922) 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.1 0.7 GO:0052629 phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.0 0.3 GO:0072320 volume-sensitive chloride channel activity(GO:0072320)
0.0 2.7 GO:0003777 microtubule motor activity(GO:0003777)
0.0 1.1 GO:0032813 tumor necrosis factor receptor superfamily binding(GO:0032813)
0.0 0.6 GO:0031683 G-protein beta/gamma-subunit complex binding(GO:0031683)
0.0 0.6 GO:0005227 calcium activated cation channel activity(GO:0005227)
0.0 0.4 GO:0070411 I-SMAD binding(GO:0070411)
0.0 0.4 GO:0000993 RNA polymerase II core binding(GO:0000993)
0.0 0.2 GO:0016405 CoA-ligase activity(GO:0016405)
0.0 0.1 GO:0004995 tachykinin receptor activity(GO:0004995)
0.0 0.9 GO:0044325 ion channel binding(GO:0044325)
0.0 0.3 GO:0008449 N-acetylglucosamine-6-sulfatase activity(GO:0008449)
0.0 0.3 GO:0032190 acrosin binding(GO:0032190)
0.0 0.8 GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538)
0.0 1.0 GO:0004722 protein serine/threonine phosphatase activity(GO:0004722)
0.0 0.7 GO:0032934 sterol binding(GO:0032934)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 2.5 PID NETRIN PATHWAY Netrin-mediated signaling events
0.0 0.7 SA CASPASE CASCADE Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade.
0.0 0.4 PID ALK2 PATHWAY ALK2 signaling events

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 2.5 REACTOME NETRIN1 SIGNALING Genes involved in Netrin-1 signaling
0.1 0.8 REACTOME HS GAG BIOSYNTHESIS Genes involved in HS-GAG biosynthesis
0.0 0.4 REACTOME SIGNALING BY BMP Genes involved in Signaling by BMP
0.0 0.4 REACTOME EXTENSION OF TELOMERES Genes involved in Extension of Telomeres