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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for tfap2b

Z-value: 0.23

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Transcription factors associated with tfap2b

Gene Symbol Gene ID Gene Info
tfap2b
ENSDARG00000012667 transcription factor AP-2 beta

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
tfap2bdr11_v1_chr20_-_47704973_47704973-0.493.8e-02Click!

Activity profile of tfap2b motif

Sorted Z-values of tfap2b motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr4_-_77551860 0.64 ENSDART00000188176
AL935186.6

chr4_-_77563411 0.63 ENSDART00000186841
AL935186.8

chr7_+_34794829 0.40 ENSDART00000009698
ENSDART00000075089
ENSDART00000173456
esrp2
epithelial splicing regulatory protein 2
chr16_+_26612401 0.34 ENSDART00000145571
epb41l4b
erythrocyte membrane protein band 4.1 like 4B
chr1_-_23293261 0.33 ENSDART00000122648
ugdh
UDP-glucose 6-dehydrogenase
chr1_-_55248496 0.31 ENSDART00000098615
nanos3
nanos homolog 3
chr22_+_10781894 0.30 ENSDART00000081183
enc3
ectodermal-neural cortex 3
chr23_+_25868637 0.29 ENSDART00000103934
ttpal
tocopherol (alpha) transfer protein-like
chr8_+_23861461 0.28 ENSDART00000037109
srpk1a
SRSF protein kinase 1a
chr16_+_20496691 0.27 ENSDART00000182737
ENSDART00000078984
cpvl
carboxypeptidase, vitellogenic-like
chr9_-_15424639 0.26 ENSDART00000124346
fn1a
fibronectin 1a
chr3_-_43646733 0.23 ENSDART00000180959
axin1
axin 1
chr7_-_38570878 0.22 ENSDART00000139187
ENSDART00000134570
ENSDART00000041055
celf1
cugbp, Elav-like family member 1
chr9_+_33334501 0.21 ENSDART00000006867
ddx3a
DEAD (Asp-Glu-Ala-Asp) box helicase 3a
chr7_-_38570299 0.21 ENSDART00000143815
celf1
cugbp, Elav-like family member 1
chr25_-_32363341 0.21 ENSDART00000153892
ENSDART00000114385
cep152
centrosomal protein 152
chr21_+_21279159 0.18 ENSDART00000148346
itpkca
inositol-trisphosphate 3-kinase Ca
chr2_-_21847935 0.18 ENSDART00000003940
rab2a
RAB2A, member RAS oncogene family
chr14_+_31509922 0.17 ENSDART00000124499
hprt1
hypoxanthine phosphoribosyltransferase 1
chr21_+_21205667 0.16 ENSDART00000058311
rictorb
RPTOR independent companion of MTOR, complex 2b
chr10_+_6383270 0.16 ENSDART00000170548
zgc:114200
zgc:114200
chr16_+_54209504 0.15 ENSDART00000020033
xrcc1
X-ray repair complementing defective repair in Chinese hamster cells 1
chr5_-_7513082 0.15 ENSDART00000158913
bmpr1ba
bone morphogenetic protein receptor, type IBa
chr20_-_54014373 0.15 ENSDART00000152934
si:dkey-241l7.6
si:dkey-241l7.6
chr16_-_21620947 0.15 ENSDART00000115011
ENSDART00000183125
ENSDART00000188856
ENSDART00000189460
ddr1
discoidin domain receptor tyrosine kinase 1
chr25_+_22017182 0.14 ENSDART00000156517
si:dkey-217l24.1
si:dkey-217l24.1
chr1_+_58990121 0.13 ENSDART00000171654
CABZ01083166.1

chr21_-_34926619 0.13 ENSDART00000065337
ENSDART00000192740
kif20a
kinesin family member 20A
chr13_+_16521898 0.12 ENSDART00000122557
kcnma1a
potassium large conductance calcium-activated channel, subfamily M, alpha member 1a
chr7_+_19482877 0.12 ENSDART00000077868
si:ch211-212k18.7
si:ch211-212k18.7
chr7_+_1442059 0.11 ENSDART00000173391
si:cabz01090193.1
si:cabz01090193.1
chr4_-_73548389 0.10 ENSDART00000174327
ENSDART00000150753
ENSDART00000170775
si:ch73-266f23.1
si:ch73-266f23.1
chr21_+_26748141 0.10 ENSDART00000169025
pcxa
pyruvate carboxylase a
chr13_+_36585399 0.09 ENSDART00000030211
gmfb
glia maturation factor, beta
chr11_-_24526503 0.09 ENSDART00000181252
plekhg5a
pleckstrin homology domain containing, family G (with RhoGef domain) member 5a
chr12_+_5708400 0.07 ENSDART00000017191
dlx3b
distal-less homeobox 3b
chr18_+_18104235 0.07 ENSDART00000145342
cbln1
cerebellin 1 precursor
chr7_+_1521834 0.07 ENSDART00000174007
si:cabz01102082.1
si:cabz01102082.1
chr12_-_8958353 0.07 ENSDART00000041728
cyp26a1
cytochrome P450, family 26, subfamily A, polypeptide 1
chr23_-_1017428 0.06 ENSDART00000110588
ENSDART00000183158
cdh26.1
cadherin 26, tandem duplicate 1
chr10_-_43964028 0.06 ENSDART00000009134
ENSDART00000133450
sept5b
septin 5b
chr6_+_7322587 0.06 ENSDART00000065500
abcc4
ATP-binding cassette, sub-family C (CFTR/MRP), member 4
chr8_+_24281512 0.06 ENSDART00000062845
mmp9
matrix metallopeptidase 9
chr10_-_5135788 0.06 ENSDART00000108587
ENSDART00000138537
sec31a
SEC31 homolog A, COPII coat complex component
chr22_-_9677264 0.06 ENSDART00000181737
si:dkey-286j17.4
si:dkey-286j17.4
chr25_+_6471401 0.05 ENSDART00000132927
snx33
sorting nexin 33
chr8_+_26329482 0.05 ENSDART00000048676
prkar2aa
protein kinase, cAMP-dependent, regulatory, type II, alpha A
chr25_-_20870900 0.04 ENSDART00000171288
magi2b
membrane associated guanylate kinase, WW and PDZ domain containing 2b
chr9_+_44721808 0.03 ENSDART00000190578
nckap1
NCK-associated protein 1
chr9_+_22764235 0.03 ENSDART00000090875
tnfaip6
tumor necrosis factor, alpha-induced protein 6
chr23_-_27701361 0.03 ENSDART00000186688
ENSDART00000183985
dnajc22
DnaJ (Hsp40) homolog, subfamily C, member 22
chr23_+_39461989 0.03 ENSDART00000184761
mical1
microtubule associated monooxygenase, calponin and LIM domain containing 1
chr11_-_35975026 0.03 ENSDART00000186219
itpr1b
inositol 1,4,5-trisphosphate receptor, type 1b
chr23_-_1017605 0.03 ENSDART00000138290
cdh26.1
cadherin 26, tandem duplicate 1
chr15_-_18213515 0.02 ENSDART00000101635
btr21
bloodthirsty-related gene family, member 21
chr7_+_19482084 0.02 ENSDART00000173873
si:ch211-212k18.7
si:ch211-212k18.7
chr17_-_26868169 0.02 ENSDART00000157204
si:dkey-221l4.10
si:dkey-221l4.10
chr6_-_19035749 0.02 ENSDART00000187714
sept9b
septin 9b
chr6_+_102506 0.02 ENSDART00000172678
ldlrb
low density lipoprotein receptor b
chr2_-_30324297 0.02 ENSDART00000099078
jph1b
junctophilin 1b
chr1_-_43987873 0.02 ENSDART00000108821
CR385050.1

chr14_+_10450216 0.02 ENSDART00000134814
cysltr1
cysteinyl leukotriene receptor 1
chr25_+_16945348 0.02 ENSDART00000016591
fgf6a
fibroblast growth factor 6a
chr4_+_54439143 0.02 ENSDART00000170168
si:ch211-133h13.1
si:ch211-133h13.1
chr3_+_16455749 0.01 ENSDART00000090767
kcnj12b
potassium inwardly-rectifying channel, subfamily J, member 12b
chr4_-_20115570 0.01 ENSDART00000134528
si:dkey-159a18.1
si:dkey-159a18.1
chr17_-_27972307 0.01 ENSDART00000062130
ptafr
platelet-activating factor receptor
chr22_-_17953529 0.01 ENSDART00000135716
ncanb
neurocan b
chr12_+_30360579 0.01 ENSDART00000152900
si:ch211-225b10.3
si:ch211-225b10.3
chr12_+_30360184 0.01 ENSDART00000190718
si:ch211-225b10.3
si:ch211-225b10.3
chr2_-_31800521 0.01 ENSDART00000112763
retreg1
reticulophagy regulator 1
chr18_+_33212589 0.01 ENSDART00000028134
olfcd1
olfactory receptor C family, d1
chr6_-_2171818 0.01 ENSDART00000181082
ENSDART00000187556
PXMP4
wu:fe02h09
chr4_+_58667348 0.01 ENSDART00000186596
ENSDART00000180673
CR388148.2

chr6_+_38381957 0.01 ENSDART00000087300
gabrb3
gamma-aminobutyric acid (GABA) A receptor, beta 3
chr7_-_61842593 0.01 ENSDART00000023770
HTRA3
HtrA serine peptidase 3
chr4_-_72513569 0.01 ENSDART00000174130
CR788316.4

chr18_+_24919614 0.01 ENSDART00000008638
rgma
repulsive guidance molecule family member a
chr23_-_9965148 0.01 ENSDART00000137308
plxnb1a
plexin b1a
chr25_+_21180695 0.00 ENSDART00000012923
erc1a
ELKS/RAB6-interacting/CAST family member 1a
chr5_-_15948833 0.00 ENSDART00000051649
ENSDART00000124467
xbp1
X-box binding protein 1
chr3_-_33030727 0.00 ENSDART00000157591
ENSDART00000193200
CT583642.1

chr12_-_21834611 0.00 ENSDART00000179553
thrab
thyroid hormone receptor alpha b
chr9_-_48864942 0.00 ENSDART00000113855
ENSDART00000189064
nostrin
nitric oxide synthase trafficking

Network of associatons between targets according to the STRING database.

First level regulatory network of tfap2b

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0061113 endodermal digestive tract morphogenesis(GO:0061031) pancreas morphogenesis(GO:0061113)
0.1 0.3 GO:0030718 germ-line stem cell population maintenance(GO:0030718)
0.1 0.2 GO:0090244 Wnt signaling pathway involved in somitogenesis(GO:0090244)
0.1 0.2 GO:0071470 cellular response to osmotic stress(GO:0071470)
0.1 0.2 GO:0032263 guanine salvage(GO:0006178) GMP salvage(GO:0032263) guanine biosynthetic process(GO:0046099)
0.0 0.3 GO:0003190 heart valve formation(GO:0003188) atrioventricular valve formation(GO:0003190)
0.0 0.3 GO:0003319 cardioblast migration to the midline involved in heart rudiment formation(GO:0003319) acute-phase response(GO:0006953) establishment of epithelial cell apical/basal polarity(GO:0045198)
0.0 0.2 GO:0098535 de novo centriole assembly(GO:0098535)
0.0 0.1 GO:0030910 olfactory placode formation(GO:0030910)
0.0 0.2 GO:0000012 single strand break repair(GO:0000012)
0.0 0.1 GO:0002631 granuloma formation(GO:0002432) chronic inflammatory response(GO:0002544) regulation of granuloma formation(GO:0002631) regulation of chronic inflammatory response(GO:0002676)
0.0 0.2 GO:0007220 Notch receptor processing(GO:0007220)
0.0 0.2 GO:0038203 TORC2 signaling(GO:0038203)
0.0 0.1 GO:0034653 diterpenoid catabolic process(GO:0016103) terpenoid catabolic process(GO:0016115) retinoic acid catabolic process(GO:0034653)
0.0 0.1 GO:0046959 nonassociative learning(GO:0046958) habituation(GO:0046959)
0.0 0.0 GO:0019417 sulfur oxidation(GO:0019417)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0098536 deuterosome(GO:0098536)
0.0 0.3 GO:0005614 interstitial matrix(GO:0005614)
0.0 0.2 GO:0030877 beta-catenin destruction complex(GO:0030877)
0.0 0.7 GO:0045495 pole plasm(GO:0045495)
0.0 0.2 GO:0070765 gamma-secretase complex(GO:0070765)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0003979 UDP-glucose 6-dehydrogenase activity(GO:0003979)
0.1 0.2 GO:0004422 hypoxanthine phosphoribosyltransferase activity(GO:0004422)
0.1 0.3 GO:0004185 serine-type carboxypeptidase activity(GO:0004185)
0.0 0.3 GO:0001948 glycoprotein binding(GO:0001948) proteoglycan binding(GO:0043394)
0.0 0.1 GO:0004736 pyruvate carboxylase activity(GO:0004736)
0.0 0.1 GO:0008401 retinoic acid 4-hydroxylase activity(GO:0008401)
0.0 0.1 GO:0015562 efflux transmembrane transporter activity(GO:0015562)
0.0 0.1 GO:0038062 protein tyrosine kinase collagen receptor activity(GO:0038062) collagen receptor activity(GO:0038064)
0.0 0.2 GO:0005025 transforming growth factor beta receptor activity, type I(GO:0005025)
0.0 0.2 GO:0000828 inositol hexakisphosphate kinase activity(GO:0000828)
0.0 0.0 GO:0070699 beta-1 adrenergic receptor binding(GO:0031697) type II activin receptor binding(GO:0070699)
0.0 0.1 GO:0071933 Arp2/3 complex binding(GO:0071933)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 PID WNT CANONICAL PATHWAY Canonical Wnt signaling pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 REACTOME PURINE SALVAGE Genes involved in Purine salvage
0.0 0.2 REACTOME CTNNB1 PHOSPHORYLATION CASCADE Genes involved in Beta-catenin phosphorylation cascade
0.0 0.3 REACTOME PHASE II CONJUGATION Genes involved in Phase II conjugation
0.0 0.2 REACTOME RESOLUTION OF AP SITES VIA THE SINGLE NUCLEOTIDE REPLACEMENT PATHWAY Genes involved in Resolution of AP sites via the single-nucleotide replacement pathway