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PRJNA438478: RNAseq of wild type zebrafish germline
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Results for thrb
Z-value: 0.17
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Transcription factors associated with thrb
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
thrb
|
ENSDARG00000021163 | thyroid hormone receptor beta |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| thrb | dr11_v1_chr19_-_17658160_17658253 | 0.61 | 7.8e-03 | Click! |
Activity profile of thrb motif
Sorted Z-values of thrb motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr13_+_33462232 | 0.28 |
ENSDART00000177841
|
zgc:136302
|
zgc:136302 |
| chr9_+_38883388 | 0.23 |
ENSDART00000135902
|
map2
|
microtubule-associated protein 2 |
| chr6_+_60112200 | 0.20 |
ENSDART00000008243
|
prelid3b
|
PRELI domain containing 3 |
| chr15_-_34878388 | 0.20 |
ENSDART00000154094
|
mgat1a
|
mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase a |
| chr9_+_22634073 | 0.19 |
ENSDART00000181822
|
etv5a
|
ets variant 5a |
| chr2_+_19163965 | 0.12 |
ENSDART00000166073
|
elovl1a
|
ELOVL fatty acid elongase 1a |
| chr15_-_34408777 | 0.10 |
ENSDART00000139934
|
agmo
|
alkylglycerol monooxygenase |
| chr19_+_29854223 | 0.10 |
ENSDART00000109729
ENSDART00000157419 |
si:ch73-130a3.4
|
si:ch73-130a3.4 |
| chr5_-_26323137 | 0.06 |
ENSDART00000133823
|
arvcfb
|
ARVCF, delta catenin family member b |
| chr3_+_34846201 | 0.06 |
ENSDART00000055263
|
itga3a
|
integrin, alpha 3a |
| chr2_-_5199431 | 0.05 |
ENSDART00000063384
|
phb2a
|
prohibitin 2a |
| chr15_+_5088210 | 0.04 |
ENSDART00000183423
|
mxf
|
myxovirus (influenza virus) resistance F |
| chr20_-_35750810 | 0.04 |
ENSDART00000153072
|
adgrf8
|
adhesion G protein-coupled receptor F8 |
| chr5_+_38673168 | 0.02 |
ENSDART00000135267
|
si:dkey-58f10.12
|
si:dkey-58f10.12 |
| chr5_+_28797771 | 0.02 |
ENSDART00000188845
ENSDART00000149066 |
si:ch211-186e20.7
|
si:ch211-186e20.7 |
| chr4_-_64142389 | 0.02 |
ENSDART00000172126
|
BX914205.3
|
|
| chr5_+_28857969 | 0.02 |
ENSDART00000149850
|
si:ch211-186e20.2
|
si:ch211-186e20.2 |
| chr22_-_6219092 | 0.01 |
ENSDART00000150040
|
si:ch211-274k16.2
|
si:ch211-274k16.2 |
| chr6_-_29537219 | 0.01 |
ENSDART00000180262
|
pex5la
|
peroxisomal biogenesis factor 5-like a |
| chr7_-_8156169 | 0.01 |
ENSDART00000182960
ENSDART00000190184 ENSDART00000190885 ENSDART00000189867 ENSDART00000160836 |
si:cabz01030277.1
si:ch211-163c2.3
|
si:cabz01030277.1 si:ch211-163c2.3 |
| chr7_-_8014186 | 0.00 |
ENSDART00000190012
|
si:cabz01030277.1
|
si:cabz01030277.1 |
| chr19_-_32804535 | 0.00 |
ENSDART00000175613
ENSDART00000052098 |
nt5c1aa
|
5'-nucleotidase, cytosolic IAa |
Network of associatons between targets according to the STRING database.
First level regulatory network of thrb
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0046485 | ether lipid metabolic process(GO:0046485) |
| 0.0 | 0.2 | GO:0060217 | hemangioblast cell differentiation(GO:0060217) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | GO:0003827 | alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity(GO:0003827) |
| 0.0 | 0.2 | GO:1990050 | phosphatidic acid transporter activity(GO:1990050) |
| 0.0 | 0.1 | GO:0016714 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen(GO:0016714) |