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PRJNA438478: RNAseq of wild type zebrafish germline
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Results for zgc:101100
Z-value: 0.29
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Transcription factors associated with zgc:101100
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| zgc:101100 | dr11_v1_chr8_+_20488322_20488322 | 0.82 | 3.3e-05 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr10_+_2841205 Show fit | 0.70 |
ENSDART00000131505
ENSDART00000055869 |
YKT6 v-SNARE homolog (S. cerevisiae) |
|
| chr8_+_2656231 Show fit | 0.58 |
ENSDART00000160833
|
family with sequence similarity 102, member Aa |
|
| chr1_-_44928987 Show fit | 0.53 |
ENSDART00000134635
|
si:dkey-9i23.15 |
|
| chr8_+_2656681 Show fit | 0.52 |
ENSDART00000185067
ENSDART00000165943 |
family with sequence similarity 102, member Aa |
|
| chr21_-_9562272 Show fit | 0.49 |
ENSDART00000162225
ENSDART00000163874 ENSDART00000168173 |
protein tyrosine phosphatase, non-receptor type 13 |
|
| chr7_+_66884291 Show fit | 0.48 |
ENSDART00000187499
|
SET binding factor 2 |
|
| chr2_-_58075414 Show fit | 0.46 |
ENSDART00000161920
|
nectin cell adhesion molecule 4 |
|
| chr6_-_17999776 Show fit | 0.46 |
ENSDART00000183048
ENSDART00000181577 ENSDART00000170597 |
regulatory associated protein of MTOR, complex 1 |
|
| chr22_-_20695237 Show fit | 0.46 |
ENSDART00000112722
|
oogenesis-related gene |
|
| chr18_+_49969568 Show fit | 0.46 |
ENSDART00000126916
|
MOB kinase activator 2b |
Network of associatons between targets according to the STRING database.
First level regulatory network of zgc:101100
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | GO:0010332 | response to gamma radiation(GO:0010332) cellular response to gamma radiation(GO:0071480) |
| 0.1 | 0.5 | GO:0097198 | histone H3-K36 trimethylation(GO:0097198) |
| 0.0 | 0.5 | GO:0038202 | TORC1 signaling(GO:0038202) cellular response to amino acid stimulus(GO:0071230) |
| 0.0 | 0.5 | GO:0035335 | peptidyl-tyrosine dephosphorylation(GO:0035335) |
| 0.1 | 0.4 | GO:0016559 | peroxisome fission(GO:0016559) |
| 0.1 | 0.3 | GO:0002926 | tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridine biosynthesis.(GO:0002926) |
| 0.1 | 0.2 | GO:1903069 | regulation of ER-associated ubiquitin-dependent protein catabolic process(GO:1903069) |
| 0.0 | 0.2 | GO:0048069 | eye pigmentation(GO:0048069) |
| 0.0 | 0.2 | GO:0036371 | protein localization to T-tubule(GO:0036371) |
| 0.0 | 0.2 | GO:0021754 | facial nucleus development(GO:0021754) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | GO:0031931 | TORC1 complex(GO:0031931) |
| 0.1 | 0.4 | GO:0031231 | integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231) |
| 0.0 | 0.4 | GO:0000974 | Prp19 complex(GO:0000974) |
| 0.0 | 0.3 | GO:0033588 | Elongator holoenzyme complex(GO:0033588) |
| 0.0 | 0.3 | GO:1990589 | ATF4-CREB1 transcription factor complex(GO:1990589) |
| 0.0 | 0.3 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
| 0.0 | 0.2 | GO:0000221 | vacuolar proton-transporting V-type ATPase, V1 domain(GO:0000221) |
| 0.0 | 0.2 | GO:0033179 | proton-transporting V-type ATPase, V0 domain(GO:0033179) |
| 0.0 | 0.2 | GO:0030315 | T-tubule(GO:0030315) |
| 0.0 | 0.1 | GO:0008180 | COP9 signalosome(GO:0008180) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.2 | GO:0019208 | phosphatase regulator activity(GO:0019208) |
| 0.0 | 0.5 | GO:0036312 | phosphatidylinositol 3-kinase regulatory subunit binding(GO:0036312) |
| 0.0 | 0.5 | GO:0046975 | histone methyltransferase activity (H3-K36 specific)(GO:0046975) |
| 0.0 | 0.4 | GO:0004711 | ribosomal protein S6 kinase activity(GO:0004711) |
| 0.0 | 0.3 | GO:0004791 | thioredoxin-disulfide reductase activity(GO:0004791) |
| 0.0 | 0.3 | GO:0035497 | cAMP response element binding(GO:0035497) |
| 0.0 | 0.1 | GO:0004421 | hydroxymethylglutaryl-CoA synthase activity(GO:0004421) |
| 0.0 | 0.1 | GO:0005521 | lamin binding(GO:0005521) |
| 0.0 | 0.1 | GO:0017020 | myosin phosphatase regulator activity(GO:0017020) |
| 0.0 | 0.1 | GO:0019784 | NEDD8-specific protease activity(GO:0019784) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.5 | PID EPHRINB REV PATHWAY | Ephrin B reverse signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.5 | REACTOME MTORC1 MEDIATED SIGNALLING | Genes involved in mTORC1-mediated signalling |
| 0.0 | 0.3 | REACTOME INHIBITION OF REPLICATION INITIATION OF DAMAGED DNA BY RB1 E2F1 | Genes involved in Inhibition of replication initiation of damaged DNA by RB1/E2F1 |
| 0.0 | 0.2 | REACTOME TRANSFERRIN ENDOCYTOSIS AND RECYCLING | Genes involved in Transferrin endocytosis and recycling |