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PRJNA438478: RNAseq of wild type zebrafish germline
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Results for zic3
Z-value: 0.17
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Transcription factors associated with zic3
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
zic3
|
ENSDARG00000071497 | zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila) |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| zic3 | dr11_v1_chr14_-_32016615_32016615 | -0.89 | 6.4e-07 | Click! |
Activity profile of zic3 motif
Sorted Z-values of zic3 motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr22_-_37565348 | 0.29 |
ENSDART00000149482
ENSDART00000104478 |
fxr1
|
fragile X mental retardation, autosomal homolog 1 |
| chr6_+_27090800 | 0.23 |
ENSDART00000121558
|
atg4b
|
autophagy related 4B, cysteine peptidase |
| chr23_-_14057191 | 0.18 |
ENSDART00000154908
|
adcy6a
|
adenylate cyclase 6a |
| chr11_+_34921492 | 0.17 |
ENSDART00000128070
|
gnai2a
|
guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2a |
| chr19_+_23982466 | 0.16 |
ENSDART00000080673
|
syt11a
|
synaptotagmin XIa |
| chr2_-_57707039 | 0.16 |
ENSDART00000097685
|
CABZ01060891.1
|
|
| chr2_+_51783120 | 0.15 |
ENSDART00000177559
|
crygn1
|
crystallin, gamma N1 |
| chr8_+_49096486 | 0.13 |
ENSDART00000192998
|
zgc:56525
|
zgc:56525 |
| chr10_-_105100 | 0.12 |
ENSDART00000145716
|
ttc3
|
tetratricopeptide repeat domain 3 |
| chr19_+_9050852 | 0.11 |
ENSDART00000151031
|
ash1l
|
ash1 (absent, small, or homeotic)-like (Drosophila) |
| chr25_-_34740627 | 0.09 |
ENSDART00000137665
|
frs2b
|
fibroblast growth factor receptor substrate 2b |
| chr20_-_21910043 | 0.08 |
ENSDART00000152290
ENSDART00000109084 |
daam1b
|
dishevelled associated activator of morphogenesis 1b |
| chr14_-_16476863 | 0.07 |
ENSDART00000089021
|
canx
|
calnexin |
| chr2_-_30784198 | 0.06 |
ENSDART00000182523
ENSDART00000147355 |
rgs20
|
regulator of G protein signaling 20 |
| chr22_-_7809904 | 0.06 |
ENSDART00000182269
ENSDART00000097201 ENSDART00000138522 |
si:ch73-44m9.3
si:ch73-44m9.1
|
si:ch73-44m9.3 si:ch73-44m9.1 |
| chr7_+_36898622 | 0.04 |
ENSDART00000190773
|
tox3
|
TOX high mobility group box family member 3 |
| chr5_-_22615087 | 0.02 |
ENSDART00000146035
|
zgc:113208
|
zgc:113208 |
| chr8_+_35356944 | 0.01 |
ENSDART00000143243
|
si:dkeyp-14d3.1
|
si:dkeyp-14d3.1 |
| chr2_-_30784502 | 0.01 |
ENSDART00000056735
|
rgs20
|
regulator of G protein signaling 20 |
| chr8_-_40075983 | 0.01 |
ENSDART00000141455
|
ggt1a
|
gamma-glutamyltransferase 1a |
| chr20_-_40725142 | 0.00 |
ENSDART00000181279
|
cx32.2
|
connexin 32.2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of zic3
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | GO:0035588 | adenosine receptor signaling pathway(GO:0001973) purinergic receptor signaling pathway(GO:0035587) G-protein coupled purinergic receptor signaling pathway(GO:0035588) |
| 0.0 | 0.3 | GO:0051489 | regulation of filopodium assembly(GO:0051489) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | GO:1902737 | dendritic spine neck(GO:0044326) dendritic filopodium(GO:1902737) |
| 0.0 | 0.1 | GO:0016586 | RSC complex(GO:0016586) |