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PRJNA438478: RNAseq of wild type zebrafish germline
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Results for znf410
Z-value: 0.60
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Transcription factors associated with znf410
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
znf410
|
ENSDARG00000008218 | zinc finger protein 410 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| znf410 | dr11_v1_chr20_+_54356540_54356540 | -0.96 | 3.6e-10 | Click! |
Activity profile of znf410 motif
Sorted Z-values of znf410 motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr16_-_31791165 | 7.22 |
ENSDART00000148389
|
chd4b
|
chromodomain helicase DNA binding protein 4b |
| chr19_-_5058908 | 4.50 |
ENSDART00000130062
|
chd4a
|
chromodomain helicase DNA binding protein 4a |
| chr19_-_5058515 | 1.43 |
ENSDART00000150980
|
chd4a
|
chromodomain helicase DNA binding protein 4a |
| chr10_-_35186310 | 0.74 |
ENSDART00000127805
|
pom121
|
POM121 transmembrane nucleoporin |
| chr6_+_18359306 | 0.59 |
ENSDART00000157796
|
cbx8b
|
chromobox homolog 8b |
| chr13_-_11800281 | 0.25 |
ENSDART00000079392
|
zmp:0000000662
|
zmp:0000000662 |
| chr4_+_76336061 | 0.20 |
ENSDART00000174362
|
zgc:171673
|
zgc:171673 |
| chr4_-_70849761 | 0.13 |
ENSDART00000168745
|
im:7141269
|
im:7141269 |
| chr10_-_94184 | 0.10 |
ENSDART00000146125
|
ttc3
|
tetratricopeptide repeat domain 3 |
| chr19_-_977849 | 0.09 |
ENSDART00000172303
|
CABZ01088282.1
|
|
| chr5_+_59534286 | 0.04 |
ENSDART00000189341
|
gtf2ird1
|
GTF2I repeat domain containing 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of znf410
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 5.9 | GO:0031101 | fin regeneration(GO:0031101) |
| 0.0 | 0.7 | GO:0006405 | RNA export from nucleus(GO:0006405) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 5.9 | GO:0090545 | NuRD complex(GO:0016581) CHD-type complex(GO:0090545) |
| 0.0 | 0.7 | GO:0005643 | nuclear pore(GO:0005643) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 5.9 | GO:0001103 | RNA polymerase II repressing transcription factor binding(GO:0001103) |
| 0.1 | 7.2 | GO:0003678 | DNA helicase activity(GO:0003678) |
| 0.0 | 0.7 | GO:0008139 | nuclear localization sequence binding(GO:0008139) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.7 | REACTOME TRANSPORT OF RIBONUCLEOPROTEINS INTO THE HOST NUCLEUS | Genes involved in Transport of Ribonucleoproteins into the Host Nucleus |