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12D miR HR13_24

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Results for Hoxc13_Hoxd13

Z-value: 0.84

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Transcription factors associated with Hoxc13_Hoxd13

Gene Symbol Gene ID Gene Info
ENSMUSG00000001655.6 homeobox C13
ENSMUSG00000001819.4 homeobox D13

Activity profile of Hoxc13_Hoxd13 motif

Sorted Z-values of Hoxc13_Hoxd13 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr3_-_75451818 2.04 ENSMUST00000178270.1
WD repeat domain 49
chr15_-_101850778 2.00 ENSMUST00000023790.3
keratin 1
chr16_+_23226014 1.64 ENSMUST00000178797.1
beta galactoside alpha 2,6 sialyltransferase 1
chr7_-_73537621 1.36 ENSMUST00000172704.1
chromodomain helicase DNA binding protein 2
chr18_-_38209762 1.33 ENSMUST00000057185.6
protocadherin 1
chr6_+_96115249 1.20 ENSMUST00000075080.5
family with sequence similarity 19, member A1
chr4_-_148500449 1.19 ENSMUST00000030840.3
angiopoietin-like 7
chr4_-_110290884 1.15 ENSMUST00000142722.1
ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
chr17_-_57000018 1.07 ENSMUST00000002740.2
persephin
chr8_+_34807287 1.02 ENSMUST00000033930.4
dual specificity phosphatase 4
chr4_+_54945038 0.97 ENSMUST00000133895.1
zinc finger protein 462
chr3_+_59006978 0.97 ENSMUST00000040325.7
ENSMUST00000164225.1
ENSMUST00000040846.8
ENSMUST00000029393.8
mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like
chr3_+_126597415 0.91 ENSMUST00000066452.7
ENSMUST00000171289.1
ENSMUST00000106399.1
calcium/calmodulin-dependent protein kinase II, delta
chr11_-_99993992 0.89 ENSMUST00000105049.1
keratin associated protein 17-1
chr11_-_99986593 0.74 ENSMUST00000105050.2
keratin associated protein 16-1
chrX_+_107816477 0.74 ENSMUST00000143975.1
ENSMUST00000144695.1
ENSMUST00000167154.1
family with sequence similarity 46, member D
chr1_+_59256906 0.71 ENSMUST00000160662.1
ENSMUST00000114248.2
cyclin-dependent kinase 15
chr1_+_60908993 0.69 ENSMUST00000027164.2
cytotoxic T-lymphocyte-associated protein 4
chrX_+_164140447 0.68 ENSMUST00000073973.4
angiotensin I converting enzyme (peptidyl-dipeptidase A) 2
chr17_+_6270475 0.66 ENSMUST00000088940.4
transmembrane protein 181A
chr13_-_17694729 0.65 ENSMUST00000068545.4
RIKEN cDNA 5033411D12 gene
chr17_-_13761441 0.64 ENSMUST00000127032.1
t-complex-associated testis expressed 2
chr12_+_11456052 0.58 ENSMUST00000124065.1
RAD51 associated protein 2
chr14_+_58070547 0.57 ENSMUST00000165526.1
fibroblast growth factor 9
chr17_-_90088343 0.57 ENSMUST00000173917.1
neurexin I
chr16_+_75592844 0.54 ENSMUST00000114249.1
ENSMUST00000046378.7
ENSMUST00000114253.1
RNA binding motif protein 11
chr16_-_74411776 0.54 ENSMUST00000116586.2
roundabout homolog 2 (Drosophila)
chr8_-_70139197 0.53 ENSMUST00000075724.7
regulatory factor X-associated ankyrin-containing protein
chr3_+_126597299 0.51 ENSMUST00000106400.2
ENSMUST00000106401.1
calcium/calmodulin-dependent protein kinase II, delta
chr14_-_118052235 0.48 ENSMUST00000022725.2
dopachrome tautomerase
chr5_+_17574268 0.47 ENSMUST00000030568.7
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
chr1_+_182124737 0.47 ENSMUST00000111018.1
ENSMUST00000027792.5
signal recognition particle 9
chr5_-_66080971 0.47 ENSMUST00000127275.1
ENSMUST00000113724.1
RNA binding motif protein 47
chr4_-_141825997 0.45 ENSMUST00000102481.3
chymotrypsin-like elastase family, member 2A
chr10_-_53647080 0.41 ENSMUST00000169866.1
family with sequence similarity 184, member A
chr1_+_194976342 0.41 ENSMUST00000181226.1
ENSMUST00000181947.1
RIKEN cDNA A330023F24 gene
chr7_-_31051431 0.40 ENSMUST00000073892.4
FXYD domain-containing ion transport regulator 7
chr6_+_78370877 0.40 ENSMUST00000096904.3
regenerating islet-derived 3 beta
chr10_-_128696257 0.39 ENSMUST00000000727.2
RAB5B, member RAS oncogene family
chr10_+_70204675 0.39 ENSMUST00000020090.1
RIKEN cDNA 2310015B20 gene
chr2_-_127792467 0.38 ENSMUST00000135091.1
RIKEN cDNA 1500011K16 gene
chr3_-_142169196 0.38 ENSMUST00000098568.1
bone morphogenetic protein receptor, type 1B
chr5_+_90561102 0.35 ENSMUST00000094615.4
RIKEN cDNA 5830473C10 gene
chr10_-_34044302 0.35 ENSMUST00000048052.5
family with sequence similarity 26, member D
chr9_+_50575273 0.35 ENSMUST00000059081.6
ENSMUST00000180021.1
interleukin 18
chr15_-_101573883 0.35 ENSMUST00000042957.5
keratin 75
chr11_+_75732869 0.34 ENSMUST00000067664.3
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
chr11_-_5542177 0.34 ENSMUST00000020776.4
coiled-coil domain containing 117
chr7_+_28540863 0.32 ENSMUST00000119180.2
syncollin
chr3_-_142169311 0.31 ENSMUST00000106230.1
bone morphogenetic protein receptor, type 1B
chr1_+_85100164 0.30 ENSMUST00000097669.1
predicted gene 10553
chr7_-_119895446 0.30 ENSMUST00000098080.2
DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
chr17_-_31144271 0.29 ENSMUST00000024826.7
trefoil factor 2 (spasmolytic protein 1)
chr5_+_114146525 0.28 ENSMUST00000102582.1
acetyl-Coenzyme A carboxylase beta
chr8_+_105264648 0.28 ENSMUST00000036221.5
F-box and leucine-rich repeat protein 8
chr9_-_64022043 0.27 ENSMUST00000041029.5
SMAD family member 6
chr10_+_96616998 0.27 ENSMUST00000038377.7
B cell translocation gene 1, anti-proliferative
chr16_-_57231434 0.26 ENSMUST00000023431.6
TBC1 domain family, member 23
chr15_-_79062866 0.24 ENSMUST00000151889.1
ENSMUST00000040676.4
ankyrin repeat domain 54
chr11_+_105994635 0.24 ENSMUST00000183675.1
ENSMUST00000184871.1
angiotensin I converting enzyme 3 precursor
angiotensin I converting enzyme (peptidyl-dipeptidase A) 3
chr13_-_23571151 0.23 ENSMUST00000102969.3
histone cluster 1, H2ae
chr19_-_7341792 0.21 ENSMUST00000164205.1
ENSMUST00000165286.1
ENSMUST00000168324.1
ENSMUST00000032557.8
MAP/microtubule affinity-regulating kinase 2
chr13_+_111867931 0.21 ENSMUST00000128198.1
predicted gene 15326
chr18_+_37355271 0.21 ENSMUST00000051163.1
protocadherin beta 8
chr1_+_60909148 0.21 ENSMUST00000097720.3
cytotoxic T-lymphocyte-associated protein 4
chr8_-_15046047 0.21 ENSMUST00000050493.3
ENSMUST00000123331.1
expressed sequence BB014433
chr6_+_48448100 0.19 ENSMUST00000169350.2
ENSMUST00000043676.5
SCO-spondin
chr6_-_112947246 0.18 ENSMUST00000088373.4
SLIT-ROBO Rho GTPase activating protein 3
chr18_+_37484955 0.18 ENSMUST00000053856.4
protocadherin beta 17
chr3_+_76074270 0.18 ENSMUST00000038364.8
follistatin-like 5
chr8_+_104961713 0.16 ENSMUST00000043183.7
carboxylesterase 2G
chr10_+_116143881 0.15 ENSMUST00000105271.2
protein tyrosine phosphatase, receptor type, R
chr18_-_46280820 0.15 ENSMUST00000025354.3
protein geranylgeranyltransferase type I, beta subunit
chr8_+_112570043 0.14 ENSMUST00000034225.6
ENSMUST00000118171.1
contactin associated protein-like 4
chr5_+_135064206 0.13 ENSMUST00000071263.5
DnaJ (Hsp40) homolog, subfamily C, member 30
chr7_-_34655500 0.13 ENSMUST00000032709.1
potassium channel tetramerisation domain containing 15
chr18_-_15063560 0.13 ENSMUST00000168989.1
potassium channel tetramerisation domain containing 1
chr1_-_39805311 0.12 ENSMUST00000171319.2
predicted gene 3646
chr10_-_6980376 0.12 ENSMUST00000105617.1
interaction protein for cytohesin exchange factors 1
chr8_+_15057646 0.10 ENSMUST00000033842.3
myomesin 2
chr15_-_79774408 0.09 ENSMUST00000023055.6
dynein, axonemal, light chain 4
chr11_+_119022962 0.09 ENSMUST00000026662.7
chromobox 2
chrX_-_7319291 0.08 ENSMUST00000128319.1
chloride channel 5
chr5_+_150018675 0.08 ENSMUST00000065745.3
ENSMUST00000110496.1
relaxin/insulin-like family peptide receptor 2
chr15_+_66670749 0.08 ENSMUST00000065916.7
thyroglobulin
chr3_-_104366613 0.08 ENSMUST00000056145.2
predicted gene 5546
chr10_+_28668360 0.08 ENSMUST00000060409.6
ENSMUST00000056097.4
ENSMUST00000105516.2
thymocyte selection associated
chr6_-_23650206 0.08 ENSMUST00000115354.1
ring finger protein 133
chr8_+_83666827 0.08 ENSMUST00000019608.5
prostaglandin E receptor 1 (subtype EP1)
chr2_+_74697663 0.07 ENSMUST00000059272.8
homeobox D9
chr9_-_77347889 0.07 ENSMUST00000185039.1
muscular LMNA-interacting protein
chr5_-_62765618 0.06 ENSMUST00000159470.1
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
chrX_-_136868537 0.06 ENSMUST00000058814.6
RAB9B, member RAS oncogene family
chr14_+_65666430 0.06 ENSMUST00000069226.6
scavenger receptor class A, member 5 (putative)
chr10_+_87859481 0.05 ENSMUST00000121952.1
insulin-like growth factor 1
chr17_+_43568269 0.05 ENSMUST00000024706.5
phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
chr13_-_21402688 0.05 ENSMUST00000117721.1
ENSMUST00000070785.8
ENSMUST00000116433.1
ENSMUST00000116434.3
zinc finger with KRAB and SCAN domains 3
chr14_-_76110760 0.05 ENSMUST00000022585.3
GPALPP motifs containing 1
chr9_-_96719549 0.04 ENSMUST00000128269.1
zinc finger and BTB domain containing 38
chr19_-_7341848 0.04 ENSMUST00000171393.1
MAP/microtubule affinity-regulating kinase 2
chr15_-_101924725 0.04 ENSMUST00000023797.6
keratin 4
chr15_+_23036449 0.04 ENSMUST00000164787.1
cadherin 18
chr9_-_96719404 0.04 ENSMUST00000140121.1
zinc finger and BTB domain containing 38
chr4_+_109235262 0.03 ENSMUST00000106631.2
calreticulin 4
chr9_-_77347787 0.03 ENSMUST00000184848.1
ENSMUST00000184415.1
muscular LMNA-interacting protein
chr17_-_51826562 0.03 ENSMUST00000024720.4
ENSMUST00000129667.1
ENSMUST00000156051.1
ENSMUST00000169480.1
ENSMUST00000148559.1
special AT-rich sequence binding protein 1
chr4_-_134853294 0.02 ENSMUST00000030628.8
transmembrane protein 57
chr6_-_23650298 0.02 ENSMUST00000063548.3
ring finger protein 133
chr4_-_44710408 0.02 ENSMUST00000134968.2
ENSMUST00000173821.1
ENSMUST00000174319.1
ENSMUST00000173733.1
ENSMUST00000172866.1
ENSMUST00000165417.2
ENSMUST00000107825.2
ENSMUST00000102932.3
ENSMUST00000107827.2
ENSMUST00000107826.2
paired box gene 5
chr3_+_95658771 0.02 ENSMUST00000178686.1
myeloid cell leukemia sequence 1
chr3_+_102735202 0.02 ENSMUST00000119902.1
tetraspanin 2
chr2_-_170427828 0.02 ENSMUST00000013667.2
ENSMUST00000109152.2
ENSMUST00000068137.4
breast carcinoma amplified sequence 1
chr15_-_79774383 0.02 ENSMUST00000069877.5
dynein, axonemal, light chain 4
chr8_+_56551090 0.01 ENSMUST00000040218.5
ENSMUST00000110322.3
F-box protein 8
chr6_+_24528144 0.01 ENSMUST00000031696.3
ankyrin repeat and SOCS box-containing 15
chr10_+_87859593 0.01 ENSMUST00000126490.1
insulin-like growth factor 1
chr7_+_67647405 0.01 ENSMUST00000032774.8
ENSMUST00000107471.1
tetratricopeptide repeat domain 23
chr18_+_36744656 0.01 ENSMUST00000007042.5
IK cytokine
chr1_-_138847579 0.00 ENSMUST00000093486.3
ENSMUST00000046870.6
LIM homeobox protein 9

Network of associatons between targets according to the STRING database.

First level regulatory network of Hoxc13_Hoxd13

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.6 GO:1990743 protein sialylation(GO:1990743)
0.2 2.0 GO:0001867 complement activation, lectin pathway(GO:0001867)
0.2 1.4 GO:0035022 positive regulation of Rac protein signal transduction(GO:0035022)
0.2 0.5 GO:0050925 negative regulation of negative chemotaxis(GO:0050925)
0.2 0.7 GO:0015801 aromatic amino acid transport(GO:0015801) tryptophan transport(GO:0015827)
0.2 0.5 GO:0006583 melanin biosynthetic process from tyrosine(GO:0006583)
0.2 0.9 GO:0045590 negative regulation of regulatory T cell differentiation(GO:0045590)
0.1 0.6 GO:0090126 protein complex assembly involved in synapse maturation(GO:0090126)
0.1 0.7 GO:0001550 ovarian cumulus expansion(GO:0001550) fused antrum stage(GO:0048165)
0.1 0.3 GO:0042231 interleukin-13 biosynthetic process(GO:0042231)
0.1 0.7 GO:0009405 pathogenesis(GO:0009405)
0.1 0.3 GO:2001293 fatty-acyl-CoA biosynthetic process(GO:0046949) malonyl-CoA metabolic process(GO:2001293)
0.1 0.5 GO:0006616 SRP-dependent cotranslational protein targeting to membrane, translocation(GO:0006616)
0.1 0.5 GO:0060666 pulmonary myocardium development(GO:0003350) dichotomous subdivision of terminal units involved in salivary gland branching(GO:0060666)
0.1 0.3 GO:1902309 negative regulation of peptidyl-serine dephosphorylation(GO:1902309)
0.1 1.0 GO:0035970 peptidyl-threonine dephosphorylation(GO:0035970)
0.1 1.3 GO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules(GO:0016339)
0.1 0.4 GO:0048227 plasma membrane to endosome transport(GO:0048227)
0.0 0.3 GO:0060455 negative regulation of gastric acid secretion(GO:0060455)
0.0 0.5 GO:0016554 cytidine to uridine editing(GO:0016554)
0.0 0.4 GO:0036476 neuron death in response to hydrogen peroxide(GO:0036476) regulation of hydrogen peroxide-induced neuron death(GO:1903207) negative regulation of hydrogen peroxide-induced neuron death(GO:1903208)
0.0 1.0 GO:0060218 hematopoietic stem cell differentiation(GO:0060218)
0.0 0.3 GO:2000271 positive regulation of fibroblast apoptotic process(GO:2000271)
0.0 0.2 GO:0007352 zygotic specification of dorsal/ventral axis(GO:0007352)
0.0 0.6 GO:0032927 positive regulation of activin receptor signaling pathway(GO:0032927)
0.0 0.2 GO:0038128 ERBB2 signaling pathway(GO:0038128)
0.0 0.1 GO:0051771 negative regulation of nitric-oxide synthase biosynthetic process(GO:0051771)
0.0 0.4 GO:0061436 establishment of skin barrier(GO:0061436)
0.0 0.3 GO:0010225 response to UV-C(GO:0010225)
0.0 1.0 GO:0043392 negative regulation of DNA binding(GO:0043392)
0.0 0.5 GO:0000381 regulation of alternative mRNA splicing, via spliceosome(GO:0000381)
0.0 0.1 GO:2000821 regulation of grooming behavior(GO:2000821)
0.0 0.9 GO:0001658 branching involved in ureteric bud morphogenesis(GO:0001658)
0.0 1.1 GO:0043488 regulation of mRNA stability(GO:0043488)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.6 GO:0000138 Golgi trans cisterna(GO:0000138)
0.1 2.0 GO:0001533 cornified envelope(GO:0001533)
0.1 1.1 GO:0042788 polysomal ribosome(GO:0042788)
0.1 0.5 GO:0005786 signal recognition particle receptor complex(GO:0005785) signal recognition particle, endoplasmic reticulum targeting(GO:0005786)
0.0 1.4 GO:0043194 axon initial segment(GO:0043194)
0.0 1.1 GO:0045095 keratin filament(GO:0045095)
0.0 0.6 GO:0036056 filtration diaphragm(GO:0036056) slit diaphragm(GO:0036057)
0.0 0.3 GO:0097427 microtubule bundle(GO:0097427)
0.0 0.9 GO:0045334 clathrin-coated endocytic vesicle(GO:0045334)
0.0 1.0 GO:0016592 mediator complex(GO:0016592)
0.0 0.4 GO:0042588 zymogen granule(GO:0042588)
0.0 0.5 GO:0048770 melanosome(GO:0042470) pigment granule(GO:0048770)
0.0 0.5 GO:0030673 axolemma(GO:0030673)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.0 GO:0030280 structural constituent of epidermis(GO:0030280)
0.3 1.0 GO:0008330 protein tyrosine/threonine phosphatase activity(GO:0008330)
0.3 1.6 GO:0003835 beta-galactoside alpha-2,6-sialyltransferase activity(GO:0003835)
0.1 1.4 GO:0019871 sodium channel inhibitor activity(GO:0019871)
0.1 0.9 GO:0008241 peptidyl-dipeptidase activity(GO:0008241)
0.1 0.2 GO:0030617 transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity(GO:0030617)
0.1 0.5 GO:0005047 signal recognition particle binding(GO:0005047) 7S RNA binding(GO:0008312)
0.1 0.7 GO:0005025 transforming growth factor beta receptor activity, type I(GO:0005025)
0.1 0.3 GO:0003989 acetyl-CoA carboxylase activity(GO:0003989)
0.1 0.5 GO:0008046 axon guidance receptor activity(GO:0008046)
0.0 0.6 GO:0097109 neuroligin family protein binding(GO:0097109)
0.0 0.7 GO:0015643 toxic substance binding(GO:0015643)
0.0 0.3 GO:0050815 phosphoserine binding(GO:0050815)
0.0 0.5 GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds(GO:0016863)
0.0 0.5 GO:0038191 neuropilin binding(GO:0038191)
0.0 1.1 GO:0017091 AU-rich element binding(GO:0017091)
0.0 0.1 GO:0004661 protein geranylgeranyltransferase activity(GO:0004661)
0.0 0.3 GO:0045236 CXCR chemokine receptor binding(GO:0045236)
0.0 0.5 GO:0008266 poly(U) RNA binding(GO:0008266)
0.0 0.6 GO:0005104 fibroblast growth factor receptor binding(GO:0005104)
0.0 0.7 GO:0030332 cyclin binding(GO:0030332)
0.0 0.3 GO:0050321 tau-protein kinase activity(GO:0050321)
0.0 0.8 GO:0001105 RNA polymerase II transcription coactivator activity(GO:0001105)
0.0 0.4 GO:0030742 GTP-dependent protein binding(GO:0030742)
0.0 0.3 GO:0097602 cullin family protein binding(GO:0097602)
0.0 0.1 GO:0004957 prostaglandin E receptor activity(GO:0004957)
0.0 0.4 GO:0017080 sodium channel regulator activity(GO:0017080)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.4 ST WNT CA2 CYCLIC GMP PATHWAY Wnt/Ca2+/cyclic GMP signaling.
0.0 0.3 PID ANTHRAX PATHWAY Cellular roles of Anthrax toxin
0.0 1.0 ST ERK1 ERK2 MAPK PATHWAY ERK1/ERK2 MAPK Pathway
0.0 0.9 PID BMP PATHWAY BMP receptor signaling
0.0 0.9 ST T CELL SIGNAL TRANSDUCTION T Cell Signal Transduction
0.0 1.8 PID BETA CATENIN NUC PATHWAY Regulation of nuclear beta catenin signaling and target gene transcription
0.0 0.5 PID IL3 PATHWAY IL3-mediated signaling events

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.6 REACTOME TERMINATION OF O GLYCAN BIOSYNTHESIS Genes involved in Termination of O-glycan biosynthesis
0.1 1.0 REACTOME ERKS ARE INACTIVATED Genes involved in ERKs are inactivated
0.1 1.4 REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF CAMKII Genes involved in CREB phosphorylation through the activation of CaMKII
0.0 0.6 REACTOME FGFR4 LIGAND BINDING AND ACTIVATION Genes involved in FGFR4 ligand binding and activation
0.0 0.9 REACTOME SIGNALING BY BMP Genes involved in Signaling by BMP
0.0 0.9 REACTOME CTLA4 INHIBITORY SIGNALING Genes involved in CTLA4 inhibitory signaling
0.0 0.7 REACTOME SIGNALING BY ROBO RECEPTOR Genes involved in Signaling by Robo receptor
0.0 0.9 REACTOME NCAM1 INTERACTIONS Genes involved in NCAM1 interactions
0.0 0.3 REACTOME SIGNALING BY HIPPO Genes involved in Signaling by Hippo
0.0 0.3 REACTOME ACTIVATED AMPK STIMULATES FATTY ACID OXIDATION IN MUSCLE Genes involved in Activated AMPK stimulates fatty-acid oxidation in muscle