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12D miR HR13_24

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Results for Hoxc9

Z-value: 0.58

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Transcription factors associated with Hoxc9

Gene Symbol Gene ID Gene Info
ENSMUSG00000036139.6 homeobox C9

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Hoxc9mm10_v2_chr15_+_102977032_1029770320.595.5e-02Click!

Activity profile of Hoxc9 motif

Sorted Z-values of Hoxc9 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr10_+_4710119 2.67 ENSMUST00000105588.1
ENSMUST00000105589.1
estrogen receptor 1 (alpha)
chrX_+_49463926 1.53 ENSMUST00000130558.1
Rho GTPase activating protein 36
chr10_-_67912620 1.05 ENSMUST00000064656.7
zinc finger protein 365
chr4_-_91376433 1.01 ENSMUST00000107109.2
ENSMUST00000107111.2
ENSMUST00000107120.1
ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
chr16_-_37384940 0.89 ENSMUST00000114781.1
ENSMUST00000114780.1
syntaxin binding protein 5-like
chr16_-_37384915 0.89 ENSMUST00000114787.1
ENSMUST00000114782.1
ENSMUST00000023526.2
ENSMUST00000114775.1
syntaxin binding protein 5-like
chr4_-_91376490 0.81 ENSMUST00000107124.3
ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
chr6_-_99044414 0.71 ENSMUST00000177507.1
ENSMUST00000123992.1
forkhead box P1
chr8_-_105471481 0.68 ENSMUST00000014990.6
tubulin polymerization-promoting protein family member 3
chr1_+_66321708 0.63 ENSMUST00000114013.1
microtubule-associated protein 2
chr2_+_102658640 0.61 ENSMUST00000080210.3
solute carrier family 1 (glial high affinity glutamate transporter), member 2
chr1_+_187997835 0.60 ENSMUST00000110938.1
estrogen-related receptor gamma
chr11_-_100193246 0.58 ENSMUST00000059707.2
keratin 9
chr1_+_187997821 0.57 ENSMUST00000027906.6
estrogen-related receptor gamma
chr6_-_55133014 0.55 ENSMUST00000003568.8
corticotropin releasing hormone receptor 2
chr11_+_69125896 0.50 ENSMUST00000021268.2
arachidonate lipoxygenase 3
chr15_-_55113460 0.50 ENSMUST00000100659.2
ENSMUST00000110230.1
predicted gene 9920
chr2_-_42653598 0.46 ENSMUST00000052550.6
low density lipoprotein-related protein 1B (deleted in tumors)
chr9_+_53771499 0.44 ENSMUST00000048670.8
solute carrier family 35, member F2
chr13_-_25270076 0.39 ENSMUST00000057866.6
neurensin 1
chr8_-_120228221 0.38 ENSMUST00000183235.1
RIKEN cDNA A330074K22 gene
chr10_-_88605017 0.37 ENSMUST00000119185.1
ENSMUST00000121629.1
myosin binding protein C, slow-type
chr7_-_30612731 0.33 ENSMUST00000006476.4
uroplakin 1A
chr18_+_65582239 0.32 ENSMUST00000182684.1
zinc finger protein 532
chr11_+_3330401 0.31 ENSMUST00000045153.4
phosphoinositide-3-kinase interacting protein 1
chrX_-_105928547 0.29 ENSMUST00000101305.2
alpha thalassemia/mental retardation syndrome X-linked homolog (human)
chr9_+_35423582 0.28 ENSMUST00000154652.1
cell adhesion molecule-related/down-regulated by oncogenes
chr11_-_80080928 0.27 ENSMUST00000103233.3
ENSMUST00000061283.8
cytokine receptor-like factor 3
chr13_+_58281183 0.26 ENSMUST00000180882.1
ENSMUST00000180452.1
predicted gene, 26555
chr7_-_139582790 0.26 ENSMUST00000106095.2
NK6 homeobox 2
chr3_+_66985680 0.25 ENSMUST00000065047.6
arginine/serine-rich coiled-coil 1
chr2_+_175010241 0.24 ENSMUST00000109069.1
ENSMUST00000109070.2
predicted gene 14444
chr18_+_65582390 0.23 ENSMUST00000169679.1
ENSMUST00000183326.1
zinc finger protein 532
chrX_-_18461371 0.22 ENSMUST00000044188.4
RIKEN cDNA 4930578C19 gene
chr11_-_98022594 0.22 ENSMUST00000103144.3
ENSMUST00000017552.6
ENSMUST00000092736.4
ENSMUST00000107562.1
calcium channel, voltage-dependent, beta 1 subunit
chr1_-_63769267 0.21 ENSMUST00000027102.1
RIKEN cDNA 4933402D24 gene
chr8_+_118283719 0.20 ENSMUST00000117160.1
cadherin 13
chr18_-_32036941 0.20 ENSMUST00000134663.1
myosin VIIB
chr11_-_94242701 0.20 ENSMUST00000061469.3
WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2
chr4_+_107830958 0.19 ENSMUST00000106731.2
low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
chr4_+_136143497 0.18 ENSMUST00000008016.2
inhibitor of DNA binding 3
chr6_+_52177498 0.17 ENSMUST00000070587.3
RIKEN cDNA 5730596B20 gene
chr6_+_54269135 0.16 ENSMUST00000114401.1
chimerin (chimaerin) 2
chr2_+_128967383 0.15 ENSMUST00000110320.2
ENSMUST00000110319.2
zinc finger CCCH type containing 6
chr1_+_58210397 0.14 ENSMUST00000040442.5
aldehyde oxidase 4
chrX_-_37104523 0.13 ENSMUST00000130324.1
UPF3 regulator of nonsense transcripts homolog B (yeast)
chr11_-_72215592 0.12 ENSMUST00000021157.8
mediator of RNA polymerase II transcription, subunit 31 homolog (yeast)
chr3_-_33844255 0.12 ENSMUST00000029222.5
coiled-coil domain containing 39
chr18_+_65582281 0.11 ENSMUST00000183319.1
zinc finger protein 532
chr1_-_45503282 0.11 ENSMUST00000086430.4
collagen, type V, alpha 2
chr11_+_96271453 0.10 ENSMUST00000000010.8
ENSMUST00000174042.1
homeobox B9
chr3_+_66985700 0.09 ENSMUST00000046542.6
ENSMUST00000162693.1
arginine/serine-rich coiled-coil 1
chr12_-_8499985 0.08 ENSMUST00000067384.4
ras homolog gene family, member B
chr19_-_10880370 0.07 ENSMUST00000133303.1
transmembrane protein 109
chr3_+_66985647 0.07 ENSMUST00000162362.1
ENSMUST00000065074.7
arginine/serine-rich coiled-coil 1
chr13_-_78197815 0.07 ENSMUST00000127137.2
nuclear receptor subfamily 2, group F, member 1
chr7_-_116038734 0.05 ENSMUST00000166877.1
SRY-box containing gene 6
chr10_+_128411616 0.04 ENSMUST00000096386.5
ENSMUST00000171342.1
ring finger protein 41
chr17_+_24426676 0.04 ENSMUST00000024946.5
enoyl-Coenzyme A delta isomerase 1
chr13_+_94083490 0.03 ENSMUST00000156071.1
lipoma HMGIC fusion partner-like 2
chr2_+_91082362 0.02 ENSMUST00000169852.1
spleen focus forming virus (SFFV) proviral integration oncogene
chr10_+_69925954 0.01 ENSMUST00000181974.1
ENSMUST00000182795.1
ENSMUST00000182437.1
ankyrin 3, epithelial
chr2_+_74721978 0.01 ENSMUST00000047904.3
homeobox D3
chr17_-_40914350 0.01 ENSMUST00000166343.1
glycine-N-acyltransferase-like 3

Network of associatons between targets according to the STRING database.

First level regulatory network of Hoxc9

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 2.7 GO:0060523 prostate epithelial cord elongation(GO:0060523)
0.4 1.1 GO:0033566 gamma-tubulin complex localization(GO:0033566)
0.1 0.5 GO:0033685 negative regulation of luteinizing hormone secretion(GO:0033685) gastric motility(GO:0035482)
0.1 0.6 GO:0070777 D-aspartate transport(GO:0070777) D-aspartate import(GO:0070779)
0.1 0.5 GO:0051121 hepoxilin metabolic process(GO:0051121) hepoxilin biosynthetic process(GO:0051122)
0.1 0.3 GO:0035127 post-embryonic appendage morphogenesis(GO:0035120) post-embryonic limb morphogenesis(GO:0035127) post-embryonic forelimb morphogenesis(GO:0035128) telomeric repeat-containing RNA transcription(GO:0097393) telomeric repeat-containing RNA transcription from RNA pol II promoter(GO:0097394) regulation of telomeric RNA transcription from RNA pol II promoter(GO:1901580) negative regulation of telomeric RNA transcription from RNA pol II promoter(GO:1901581) positive regulation of telomeric RNA transcription from RNA pol II promoter(GO:1901582)
0.1 0.7 GO:0032625 interleukin-21 production(GO:0032625) interleukin-21 secretion(GO:0072619)
0.0 0.3 GO:0043553 negative regulation of phosphatidylinositol 3-kinase activity(GO:0043553)
0.0 0.2 GO:0055095 lipoprotein particle mediated signaling(GO:0055095) low-density lipoprotein particle mediated signaling(GO:0055096)
0.0 0.2 GO:1904970 brush border assembly(GO:1904970)
0.0 0.2 GO:0038026 reelin-mediated signaling pathway(GO:0038026)
0.0 0.3 GO:0021913 regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification(GO:0021912) regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification(GO:0021913)
0.0 0.3 GO:0014816 skeletal muscle satellite cell differentiation(GO:0014816)
0.0 1.8 GO:0046676 negative regulation of insulin secretion(GO:0046676)
0.0 0.1 GO:1903225 negative regulation of endodermal cell differentiation(GO:1903225)
0.0 0.1 GO:0009115 xanthine catabolic process(GO:0009115)
0.0 1.2 GO:0048384 retinoic acid receptor signaling pathway(GO:0048384)
0.0 0.1 GO:0035469 determination of pancreatic left/right asymmetry(GO:0035469)
0.0 0.3 GO:0071688 striated muscle myosin thick filament assembly(GO:0071688)
0.0 0.6 GO:0007026 negative regulation of microtubule depolymerization(GO:0007026)
0.0 1.8 GO:1990823 response to leukemia inhibitory factor(GO:1990823) cellular response to leukemia inhibitory factor(GO:1990830)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 2.7 GO:0097550 transcriptional preinitiation complex(GO:0097550)
0.1 0.7 GO:0097427 microtubule bundle(GO:0097427)
0.1 0.3 GO:1990421 subtelomeric heterochromatin(GO:1990421) nuclear subtelomeric heterochromatin(GO:1990707)
0.1 0.6 GO:0097442 CA3 pyramidal cell dendrite(GO:0097442)
0.0 1.1 GO:0000930 gamma-tubulin complex(GO:0000930)
0.0 0.1 GO:0005588 collagen type V trimer(GO:0005588)
0.0 0.5 GO:0070852 cell body fiber(GO:0070852)
0.0 0.1 GO:0070847 core mediator complex(GO:0070847)
0.0 0.6 GO:0045095 keratin filament(GO:0045095)
0.0 0.6 GO:0030673 axolemma(GO:0030673)
0.0 0.3 GO:0005859 muscle myosin complex(GO:0005859)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.9 2.7 GO:0038052 type 1 metabotropic glutamate receptor binding(GO:0031798) RNA polymerase II transcription factor activity, estrogen-activated sequence-specific DNA binding(GO:0038052)
0.2 0.5 GO:0043404 corticotrophin-releasing factor receptor activity(GO:0015056) corticotropin-releasing hormone receptor activity(GO:0043404)
0.1 0.6 GO:0015501 glutamate:sodium symporter activity(GO:0015501)
0.1 0.6 GO:0005519 cytoskeletal regulatory protein binding(GO:0005519)
0.1 0.3 GO:0036313 phosphatidylinositol 3-kinase catalytic subunit binding(GO:0036313)
0.1 1.2 GO:0003708 retinoic acid receptor activity(GO:0003708)
0.0 0.2 GO:0038025 reelin receptor activity(GO:0038025)
0.0 0.3 GO:0015616 DNA translocase activity(GO:0015616)
0.0 0.5 GO:0005041 low-density lipoprotein receptor activity(GO:0005041)
0.0 0.2 GO:0055100 adiponectin binding(GO:0055100)
0.0 0.1 GO:0004854 aldehyde oxidase activity(GO:0004031) xanthine dehydrogenase activity(GO:0004854) oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor(GO:0016623) oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor(GO:0016726)
0.0 0.5 GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702)
0.0 0.3 GO:0097493 structural molecule activity conferring elasticity(GO:0097493)
0.0 1.8 GO:0019905 syntaxin binding(GO:0019905)
0.0 0.2 GO:0008191 metalloendopeptidase inhibitor activity(GO:0008191)
0.0 0.2 GO:0008331 high voltage-gated calcium channel activity(GO:0008331)
0.0 0.0 GO:0005128 erythropoietin receptor binding(GO:0005128)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 2.7 PID FOXM1 PATHWAY FOXM1 transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 2.7 REACTOME NUCLEAR SIGNALING BY ERBB4 Genes involved in Nuclear signaling by ERBB4
0.0 1.2 REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY Genes involved in Nuclear Receptor transcription pathway