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12D miR HR13_24

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Results for Hoxd9

Z-value: 0.44

Motif logo

Transcription factors associated with Hoxd9

Gene Symbol Gene ID Gene Info
ENSMUSG00000043342.8 homeobox D9

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Hoxd9mm10_v2_chr2_+_74697663_74697680-0.293.8e-01Click!

Activity profile of Hoxd9 motif

Sorted Z-values of Hoxd9 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr15_-_58364148 0.39 ENSMUST00000068515.7
annexin A13
chr1_-_86111970 0.30 ENSMUST00000027431.6
5-hydroxytryptamine (serotonin) receptor 2B
chr13_-_3945349 0.28 ENSMUST00000058610.7
urocortin 3
chr17_-_45474839 0.26 ENSMUST00000024731.8
spermatogenesis associated, serine-rich 1
chr9_+_7347374 0.22 ENSMUST00000065079.5
ENSMUST00000005950.5
matrix metallopeptidase 12
chr9_+_43310763 0.21 ENSMUST00000034511.5
tripartite motif-containing 29
chr9_-_96437434 0.21 ENSMUST00000070500.2
cDNA sequence BC043934
chr7_+_45621805 0.21 ENSMUST00000033100.4
izumo sperm-egg fusion 1
chr8_+_107119110 0.20 ENSMUST00000046116.1
RIKEN cDNA C630050I24 gene
chr5_-_43235352 0.18 ENSMUST00000140650.2
predicted gene 7854
chr3_+_114030532 0.18 ENSMUST00000123619.1
ENSMUST00000092155.5
collagen, type XI, alpha 1
chr10_-_24101951 0.18 ENSMUST00000170267.1
trace amine-associated receptor 8C
chr11_-_109472611 0.17 ENSMUST00000168740.1
solute carrier family 16 (monocarboxylic acid transporters), member 6
chr14_+_26894557 0.17 ENSMUST00000090337.4
ENSMUST00000165929.2
ankyrin repeat and SOCS box-containing 14
chr6_-_142473075 0.17 ENSMUST00000032371.7
glycogen synthase 2
chr6_+_122553799 0.16 ENSMUST00000043301.7
activation-induced cytidine deaminase
chr1_-_155099630 0.14 ENSMUST00000055322.4
immediate early response 5
chr7_+_121707189 0.14 ENSMUST00000065310.2
RIKEN cDNA 1700069B07 gene
chr8_+_84949860 0.14 ENSMUST00000121880.1
retbindin
chr3_-_14778452 0.14 ENSMUST00000094365.4
carbonic anhydrase 1
chr5_-_92348871 0.12 ENSMUST00000038816.6
ENSMUST00000118006.1
chemokine (C-X-C motif) ligand 10
chr5_-_87092546 0.12 ENSMUST00000132667.1
ENSMUST00000145617.1
ENSMUST00000094649.4
UDP glucuronosyltransferase 2 family, polypeptide B36
chr16_-_79091078 0.12 ENSMUST00000023566.4
ENSMUST00000060402.5
transmembrane protease, serine 15
chr6_-_66559708 0.12 ENSMUST00000079584.1
vomeronasal 1 receptor 32
chr8_-_41016295 0.12 ENSMUST00000131965.1
mitochondrial tumor suppressor 1
chr11_-_61720795 0.11 ENSMUST00000051552.4
solute carrier family 5 (sodium/glucose cotransporter), member 10
chr1_+_167598450 0.11 ENSMUST00000111386.1
ENSMUST00000111384.1
retinoid X receptor gamma
chr2_-_140671462 0.10 ENSMUST00000110057.2
fibronectin leucine rich transmembrane protein 3
chr9_-_106096776 0.10 ENSMUST00000121963.1
collagen, type VI, alpha 4
chr1_+_167598384 0.10 ENSMUST00000015987.3
retinoid X receptor gamma
chrX_-_134111708 0.10 ENSMUST00000159259.1
ENSMUST00000113275.3
NADPH oxidase 1
chr7_-_14562171 0.10 ENSMUST00000181796.1
vomeronasal 1 receptor 90
chr16_+_44820728 0.10 ENSMUST00000114626.3
CD200 receptor 4
chr10_+_97647084 0.10 ENSMUST00000105285.3
epiphycan
chr6_-_87533219 0.10 ENSMUST00000113637.2
ENSMUST00000071024.6
Rho GTPase activating protein 25
chr17_-_40880525 0.10 ENSMUST00000068258.2
RIKEN cDNA 9130008F23 gene
chr16_-_23029080 0.09 ENSMUST00000100046.2
kininogen 2
chrX_+_114474312 0.09 ENSMUST00000113371.1
ENSMUST00000040504.5
kelch-like 4
chr1_+_40439767 0.09 ENSMUST00000173514.1
interleukin 1 receptor-like 1
chrX_-_134751331 0.09 ENSMUST00000113194.1
ENSMUST00000052431.5
armadillo repeat containing, X-linked 6
chr7_+_90380646 0.09 ENSMUST00000098310.2
synaptotagmin-like 2
chr2_+_14174513 0.09 ENSMUST00000077517.7
transmembrane protein 236
chr3_-_144849301 0.09 ENSMUST00000159989.1
chloride channel calcium activated 4
chr2_-_121380940 0.08 ENSMUST00000038389.8
stereocilin
chr9_+_39613544 0.08 ENSMUST00000050807.6
olfactory receptor 148
chr4_-_94650092 0.08 ENSMUST00000107101.1
leucine rich repeat containing 19
chr17_+_31433054 0.08 ENSMUST00000136384.1
phosphodiesterase 9A
chr2_-_63184170 0.08 ENSMUST00000112452.1
potassium voltage-gated channel, subfamily H (eag-related), member 7
chr5_+_17962621 0.08 ENSMUST00000030561.7
guanine nucleotide binding protein, alpha transducing 3
chr6_-_36811361 0.08 ENSMUST00000101534.1
pleiotrophin
chr6_-_42597372 0.08 ENSMUST00000069023.3
family with sequence similarity 115, member E
chr5_-_92253159 0.07 ENSMUST00000031359.8
protein phosphatase, EF hand calcium-binding domain 2
chr7_-_103827922 0.07 ENSMUST00000023934.6
ENSMUST00000153218.1
hemoglobin, beta adult s chain
chr1_-_139781236 0.07 ENSMUST00000027612.8
ENSMUST00000111989.2
ENSMUST00000111986.2
predicted gene 4788
chr13_+_93304940 0.07 ENSMUST00000109497.1
ENSMUST00000109498.1
ENSMUST00000060490.4
ENSMUST00000109492.1
ENSMUST00000109496.1
ENSMUST00000109495.1
homer homolog 1 (Drosophila)
chr11_+_85171096 0.07 ENSMUST00000018623.3
RIKEN cDNA 1700125H20 gene
chr18_+_43764317 0.07 ENSMUST00000043803.6
secretoglobin, family 3A, member 2
chr1_-_175491130 0.07 ENSMUST00000027812.5
regulator of G protein signaling 7
chr8_+_66386292 0.06 ENSMUST00000039540.5
ENSMUST00000110253.2
membrane-associated ring finger (C3HC4) 1
chr18_+_56588342 0.06 ENSMUST00000035640.6
ENSMUST00000127591.1
ENSMUST00000147775.1
RIKEN cDNA 1700065I17 gene
chr1_-_138175126 0.06 ENSMUST00000183301.1
protein tyrosine phosphatase, receptor type, C
chr16_+_92292380 0.06 ENSMUST00000047383.3
potassium voltage-gated channel, Isk-related subfamily, gene 2
chr9_-_21989427 0.06 ENSMUST00000045726.6
ral guanine nucleotide dissociation stimulator-like 3
chr1_-_138175283 0.06 ENSMUST00000182755.1
ENSMUST00000183262.1
ENSMUST00000027645.7
ENSMUST00000112036.2
ENSMUST00000182283.1
protein tyrosine phosphatase, receptor type, C
chr2_+_125136692 0.06 ENSMUST00000099452.2
cortexin 2
chr10_+_130322845 0.06 ENSMUST00000042586.8
thymocyte expressed, positive selection associated 1
chr3_-_144819494 0.06 ENSMUST00000029929.7
chloride channel calcium activated 2
chr2_+_11172080 0.06 ENSMUST00000114853.1
protein kinase C, theta
chr9_-_39604124 0.06 ENSMUST00000042485.4
ENSMUST00000141370.1
expressed sequence AW551984
chrX_+_82948861 0.06 ENSMUST00000114000.1
dystrophin, muscular dystrophy
chr3_-_104777483 0.05 ENSMUST00000139783.1
family with sequence similarity 19, member A3
chr19_+_39113898 0.05 ENSMUST00000087234.2
cytochrome P450, family 2, subfamily c, polypeptide 66
chr11_-_55607733 0.05 ENSMUST00000108853.1
ENSMUST00000075603.4
glycine receptor, alpha 1 subunit
chr2_-_76870486 0.05 ENSMUST00000138542.1
titin
chr2_+_69790968 0.05 ENSMUST00000180290.1
phosphatase, orphan 2
chr16_-_45693658 0.05 ENSMUST00000114562.2
ENSMUST00000036617.7
transmembrane serine protease 7
chr8_+_107031218 0.05 ENSMUST00000034388.9
vacuolar protein sorting 4a (yeast)
chr13_-_96435952 0.05 ENSMUST00000181761.1
ankyrin repeat and death domain containing 1B
chr2_-_58052832 0.05 ENSMUST00000090940.5
ermin, ERM-like protein
chr11_-_4440745 0.05 ENSMUST00000109948.1
HORMA domain containing 2
chr18_-_37644185 0.05 ENSMUST00000066272.4
TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor
chrX_+_106583184 0.05 ENSMUST00000101296.2
ENSMUST00000101297.3
predicted gene 5127
chr18_-_78206408 0.04 ENSMUST00000163367.1
solute carrier family 14 (urea transporter), member 2
chr19_+_34100943 0.04 ENSMUST00000025685.6
lipase, family member M
chr4_-_36056726 0.04 ENSMUST00000108124.3
leucine rich repeat and Ig domain containing 2
chr18_+_80046854 0.04 ENSMUST00000070219.7
par-6 partitioning defective 6 homolog gamma (C. elegans)
chr8_-_84249701 0.04 ENSMUST00000019506.7
DNA segment, Chr 8, ERATO Doi 738, expressed
chr4_+_109235262 0.04 ENSMUST00000106631.2
calreticulin 4
chr14_+_74735641 0.04 ENSMUST00000177283.1
esterase D/formylglutathione hydrolase
chr6_-_147243794 0.04 ENSMUST00000153786.1
predicted gene 15767
chr8_+_71887264 0.04 ENSMUST00000034259.7
zinc finger protein 709
chr1_-_138175238 0.04 ENSMUST00000182536.1
protein tyrosine phosphatase, receptor type, C
chr12_+_8012359 0.04 ENSMUST00000171239.1
apolipoprotein B
chr11_+_29373618 0.04 ENSMUST00000040182.6
ENSMUST00000109477.1
coiled coil domain containing 88A
chr13_-_100246323 0.04 ENSMUST00000049789.2
NLR family, apoptosis inhibitory protein 5
chr3_-_102964124 0.04 ENSMUST00000058899.8
nuclear receptor subfamily 1, group H, member 5
chr2_-_45117349 0.04 ENSMUST00000176438.2
zinc finger E-box binding homeobox 2
chr7_-_29906524 0.04 ENSMUST00000159920.1
ENSMUST00000162592.1
zinc finger protein 27
chr17_+_17402672 0.04 ENSMUST00000115576.2
limb expression 1 homolog (chicken)
chr6_+_18848571 0.04 ENSMUST00000056398.8
N(alpha)-acetyltransferase 38, NatC auxiliary subunit
chr13_-_105271039 0.03 ENSMUST00000069686.6
ring finger protein 180
chr14_-_36919314 0.03 ENSMUST00000182797.1
coiled-coil serine rich 2
chr9_-_78109020 0.03 ENSMUST00000001402.7
f-box protein 9
chr1_+_180330470 0.03 ENSMUST00000070181.6
inositol 1,4,5-trisphosphate 3-kinase B
chr2_-_116064721 0.03 ENSMUST00000110906.2
Meis homeobox 2
chr1_+_88200601 0.03 ENSMUST00000049289.8
UDP glucuronosyltransferase 1 family, polypeptide A2
chr19_+_46689902 0.03 ENSMUST00000074912.7
RIKEN cDNA 2010012O05 gene
chr5_+_63812447 0.03 ENSMUST00000081747.3
RIKEN cDNA 0610040J01 gene
chr6_+_30512283 0.03 ENSMUST00000031798.7
serine-rich single-pass membrane protein 1
chr3_+_103171655 0.03 ENSMUST00000005830.8
breast carcinoma amplified sequence 2
chr2_-_63184253 0.03 ENSMUST00000075052.3
ENSMUST00000112454.1
potassium voltage-gated channel, subfamily H (eag-related), member 7
chr7_+_30565410 0.03 ENSMUST00000043850.7
IGF-like family receptor 1
chr2_+_67748212 0.03 ENSMUST00000180887.1
UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
chr11_+_110968016 0.03 ENSMUST00000106636.1
ENSMUST00000180023.1
potassium inwardly-rectifying channel, subfamily J, member 16
chr1_-_172027269 0.03 ENSMUST00000027837.6
ENSMUST00000111264.1
vang-like 2 (van gogh, Drosophila)
chr2_+_91526756 0.02 ENSMUST00000111338.3
cytoskeleton associated protein 5
chr10_+_75037066 0.02 ENSMUST00000147802.1
ENSMUST00000020391.5
RAB36, member RAS oncogene family
chr5_-_87424201 0.02 ENSMUST00000072818.5
UDP glucuronosyltransferase 2 family, polypeptide B38
chr12_+_59129720 0.02 ENSMUST00000175912.1
ENSMUST00000176892.1
CTAGE family, member 5
chr1_-_24612700 0.02 ENSMUST00000088336.1
predicted gene 10222
chr1_-_37536232 0.02 ENSMUST00000042161.8
mannoside acetylglucosaminyltransferase 4, isoenzyme A
chr5_-_77408034 0.02 ENSMUST00000163898.1
ENSMUST00000046746.6
insulin-like growth factor binding protein 7
chr13_+_58281183 0.02 ENSMUST00000180882.1
ENSMUST00000180452.1
predicted gene, 26555
chr1_+_88211956 0.02 ENSMUST00000073049.6
UDP glucuronosyltransferase 1 family, polypeptide A1
chr11_+_49280150 0.02 ENSMUST00000078932.1
olfactory receptor 1393
chr1_+_194619815 0.02 ENSMUST00000027952.5
plexin A2
chr2_-_37647199 0.02 ENSMUST00000028279.3
spermatid perinuclear RNA binding protein
chr3_+_32436376 0.02 ENSMUST00000108242.1
phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
chr8_-_68121527 0.02 ENSMUST00000178529.1
predicted gene, 21807
chr12_+_59129757 0.02 ENSMUST00000069430.8
ENSMUST00000177370.1
CTAGE family, member 5
chr16_+_4741543 0.02 ENSMUST00000120232.1
heme oxygenase (decycling) 2
chr3_-_65958236 0.02 ENSMUST00000029416.7
cyclin L1
chr1_-_128328311 0.02 ENSMUST00000073490.6
lactase
chr7_+_100176663 0.02 ENSMUST00000178946.1
potassium voltage-gated channel, Isk-related subfamily, gene 3
chrX_+_153126897 0.02 ENSMUST00000163801.1
forkhead box R2
chr3_+_35754121 0.02 ENSMUST00000108186.1
ENSMUST00000029257.8
ATPase, class VI, type 11B
chr14_-_121965128 0.01 ENSMUST00000049872.7
G protein-coupled receptor 183
chr16_-_65562686 0.01 ENSMUST00000004965.6
charged multivesicular body protein 2B
chr4_+_136143497 0.01 ENSMUST00000008016.2
inhibitor of DNA binding 3
chr6_+_145934113 0.01 ENSMUST00000032383.7
sarcospan
chr3_-_66296807 0.01 ENSMUST00000029419.7
ventricular zone expressed PH domain-containing 1
chr2_-_172454742 0.01 ENSMUST00000161334.1
glucosaminyl (N-acetyl) transferase family member 7
chr17_+_47649621 0.01 ENSMUST00000145314.1
ubiquitin specific peptidase 49
chr5_-_87254804 0.01 ENSMUST00000075858.3
UDP glucuronosyltransferase 2 family, polypeptide B37
chr6_-_40951826 0.01 ENSMUST00000073642.5
predicted gene 4744
chr12_+_77238093 0.01 ENSMUST00000177595.1
ENSMUST00000171770.2
fucosyltransferase 8
chr8_-_54724474 0.01 ENSMUST00000175915.1
WD repeat domain 17
chr1_-_180330550 0.01 ENSMUST00000050581.3
predicted pseudogene 5069
chr2_+_30952955 0.01 ENSMUST00000028199.5
torsin family 1, member B
chr5_+_136953246 0.01 ENSMUST00000111094.1
ENSMUST00000111097.1
fission 1 (mitochondrial outer membrane) homolog (yeast)
chrX_+_85048309 0.00 ENSMUST00000113991.1
ENSMUST00000113992.2
dystrophin, muscular dystrophy
chr5_-_100373484 0.00 ENSMUST00000182433.1
Sec31 homolog A (S. cerevisiae)
chr5_-_66514815 0.00 ENSMUST00000161879.1
ENSMUST00000159357.1
amyloid beta (A4) precursor protein-binding, family B, member 2
chr12_+_38783503 0.00 ENSMUST00000159334.1
ets variant gene 1
chr17_+_75435886 0.00 ENSMUST00000164192.1
RAS, guanyl releasing protein 3

Network of associatons between targets according to the STRING database.

First level regulatory network of Hoxd9

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0007208 phospholipase C-activating serotonin receptor signaling pathway(GO:0007208)
0.1 0.2 GO:0006216 cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087)
0.0 0.2 GO:0060054 positive regulation of epithelial cell proliferation involved in wound healing(GO:0060054)
0.0 0.1 GO:0003345 proepicardium cell migration involved in pericardium morphogenesis(GO:0003345)
0.0 0.2 GO:0002378 immunoglobulin biosynthetic process(GO:0002378) regulation of hematopoietic stem cell migration(GO:2000471) positive regulation of hematopoietic stem cell migration(GO:2000473)
0.0 0.1 GO:1901740 negative regulation of myoblast fusion(GO:1901740)
0.0 0.2 GO:0035989 tendon development(GO:0035989)
0.0 0.1 GO:0014809 regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion(GO:0014809)
0.0 0.1 GO:0010387 COP9 signalosome assembly(GO:0010387)
0.0 0.1 GO:1904395 positive regulation of skeletal muscle acetylcholine-gated channel clustering(GO:1904395)
0.0 0.2 GO:0007342 fusion of sperm to egg plasma membrane(GO:0007342)
0.0 0.1 GO:0043056 forward locomotion(GO:0043056)
0.0 0.0 GO:1903774 mitotic cytokinesis checkpoint(GO:0044878) positive regulation of viral budding via host ESCRT complex(GO:1903774)
0.0 0.1 GO:1900034 regulation of cellular response to heat(GO:1900034)
0.0 0.1 GO:0045726 positive regulation of integrin biosynthetic process(GO:0045726)
0.0 0.1 GO:1902159 regulation of cyclic nucleotide-gated ion channel activity(GO:1902159)
0.0 0.0 GO:0071918 urea transmembrane transport(GO:0071918)
0.0 0.1 GO:2000570 T-helper 2 cell activation(GO:0035712) regulation of T-helper 2 cell activation(GO:2000569) positive regulation of T-helper 2 cell activation(GO:2000570)
0.0 0.0 GO:2000458 astrocyte chemotaxis(GO:0035700) regulation of astrocyte chemotaxis(GO:2000458)
0.0 0.1 GO:0050916 sensory perception of sweet taste(GO:0050916) sensory perception of umami taste(GO:0050917)
0.0 0.1 GO:1903978 regulation of microglial cell activation(GO:1903978)
0.0 0.0 GO:0046294 formaldehyde catabolic process(GO:0046294)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0033165 interphotoreceptor matrix(GO:0033165)
0.0 0.1 GO:0031838 haptoglobin-hemoglobin complex(GO:0031838)
0.0 0.2 GO:0005583 fibrillar collagen trimer(GO:0005583) banded collagen fibril(GO:0098643)
0.0 0.3 GO:0043196 varicosity(GO:0043196)
0.0 0.0 GO:0031417 NatC complex(GO:0031417)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0004373 glycogen (starch) synthase activity(GO:0004373)
0.0 0.4 GO:1901611 phosphatidylglycerol binding(GO:1901611)
0.0 0.3 GO:0051429 corticotropin-releasing hormone receptor binding(GO:0051429)
0.0 0.1 GO:0002113 interleukin-33 binding(GO:0002113)
0.0 0.2 GO:0004126 cytidine deaminase activity(GO:0004126)
0.0 0.1 GO:0035373 chondroitin sulfate proteoglycan binding(GO:0035373)
0.0 0.1 GO:0048248 CXCR3 chemokine receptor binding(GO:0048248)
0.0 0.3 GO:0051378 G-protein coupled serotonin receptor activity(GO:0004993) serotonin binding(GO:0051378)
0.0 0.2 GO:0086080 protein binding involved in heterotypic cell-cell adhesion(GO:0086080)
0.0 0.1 GO:0004064 arylesterase activity(GO:0004064)
0.0 0.2 GO:0004886 9-cis retinoic acid receptor activity(GO:0004886)
0.0 0.1 GO:0033695 oxidoreductase activity, acting on CH or CH2 groups, quinone or similar compound as acceptor(GO:0033695) caffeine oxidase activity(GO:0034875)
0.0 0.1 GO:0031720 haptoglobin binding(GO:0031720)
0.0 0.1 GO:0030977 taurine binding(GO:0030977)
0.0 0.1 GO:0005550 pheromone binding(GO:0005550)
0.0 0.0 GO:0018738 S-formylglutathione hydrolase activity(GO:0018738)
0.0 0.1 GO:0001594 trace-amine receptor activity(GO:0001594)
0.0 0.1 GO:0033883 pyridoxal phosphatase activity(GO:0033883)
0.0 0.1 GO:0030171 voltage-gated proton channel activity(GO:0030171)
0.0 0.0 GO:0061628 H3K27me3 modified histone binding(GO:0061628)
0.0 0.1 GO:0005412 glucose:sodium symporter activity(GO:0005412)
0.0 0.1 GO:1902282 voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization(GO:1902282)
0.0 0.2 GO:0098641 cadherin binding involved in cell-cell adhesion(GO:0098641)
0.0 0.1 GO:0008321 Ral guanyl-nucleotide exchange factor activity(GO:0008321)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 REACTOME SEROTONIN RECEPTORS Genes involved in Serotonin receptors
0.0 0.2 REACTOME PHOSPHORYLATION OF CD3 AND TCR ZETA CHAINS Genes involved in Phosphorylation of CD3 and TCR zeta chains