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12D miR HR13_24

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Results for Pax4

Z-value: 0.41

Motif logo

Transcription factors associated with Pax4

Gene Symbol Gene ID Gene Info
ENSMUSG00000029706.9 paired box 4

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Pax4mm10_v2_chr6_-_28449251_28449353-0.866.5e-04Click!

Activity profile of Pax4 motif

Sorted Z-values of Pax4 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr2_-_65238625 0.54 ENSMUST00000112429.2
ENSMUST00000102726.1
ENSMUST00000112430.1
Cobl-like 1
chr2_-_65238573 0.53 ENSMUST00000090896.3
ENSMUST00000155082.1
Cobl-like 1
chr19_-_6015152 0.46 ENSMUST00000025891.8
calpain 1
chr5_+_149006948 0.44 ENSMUST00000124198.1
predicted gene 15408
chr19_-_6015769 0.43 ENSMUST00000164843.1
calpain 1
chrX_+_143518576 0.42 ENSMUST00000033640.7
p21 protein (Cdc42/Rac)-activated kinase 3
chr13_+_75089826 0.41 ENSMUST00000022075.4
proprotein convertase subtilisin/kexin type 1
chr7_+_78913401 0.39 ENSMUST00000118867.1
interferon-stimulated protein
chr2_+_105126505 0.38 ENSMUST00000143043.1
Wilms tumor 1 homolog
chr10_+_119992916 0.36 ENSMUST00000105261.2
glutamate receptor interacting protein 1
chrX_+_143518671 0.35 ENSMUST00000134402.1
p21 protein (Cdc42/Rac)-activated kinase 3
chr13_+_23738804 0.34 ENSMUST00000040914.1
histone cluster 1, H1c
chr7_+_78913436 0.34 ENSMUST00000121645.1
interferon-stimulated protein
chr8_-_22476809 0.33 ENSMUST00000163774.1
ENSMUST00000033935.8
small integral membrane protein 19
chr17_+_17402672 0.33 ENSMUST00000115576.2
limb expression 1 homolog (chicken)
chr5_-_116591811 0.29 ENSMUST00000076124.5
serine/arginine repetitive matrix 4
chr1_-_156034800 0.29 ENSMUST00000169241.1
torsin A interacting protein 1
chr7_+_78913765 0.28 ENSMUST00000038142.8
interferon-stimulated protein
chrX_-_73097017 0.27 ENSMUST00000114524.2
ENSMUST00000074619.5
X-linked lymphocyte-regulated 3A
chr18_-_22171392 0.27 ENSMUST00000025160.2
coiled coil domain containing 178
chr5_-_103100054 0.23 ENSMUST00000112848.1
mitogen-activated protein kinase 10
chr10_-_64090265 0.23 ENSMUST00000105439.1
leucine rich repeat transmembrane neuronal 3
chrX_+_73192222 0.23 ENSMUST00000101486.4
X-linked lymphocyte-regulated 3B
chrX_-_48877711 0.21 ENSMUST00000114928.1
predicted gene 595
chr3_+_20057802 0.20 ENSMUST00000002502.5
helicase-like transcription factor
chr4_+_150087365 0.19 ENSMUST00000094451.3
G protein-coupled receptor 157
chr16_-_45844228 0.19 ENSMUST00000076333.5
pleckstrin homology-like domain, family B, member 2
chr16_-_45844303 0.18 ENSMUST00000036355.6
pleckstrin homology-like domain, family B, member 2
chr2_-_168741898 0.18 ENSMUST00000109176.1
ENSMUST00000178504.1
ATPase, class II, type 9A
chr5_+_135674572 0.16 ENSMUST00000153515.1
P450 (cytochrome) oxidoreductase
chrX_-_9662950 0.16 ENSMUST00000033519.2
dynein light chain Tctex-type 3
chr1_+_88087802 0.15 ENSMUST00000113139.1
UDP glucuronosyltransferase 1 family, polypeptide A8
chr19_+_3972322 0.15 ENSMUST00000143380.1
aldehyde dehydrogenase 3 family, member B2
chr18_+_58836721 0.15 ENSMUST00000052907.5
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19
chr17_+_69383024 0.15 ENSMUST00000112674.1
zinc finger and BTB domain containing 14
chr2_+_43555321 0.14 ENSMUST00000028223.2
kynureninase (L-kynurenine hydrolase)
chrX_+_142227923 0.14 ENSMUST00000042329.5
nuclear transport factor 2-like export factor 2
chr10_+_127739516 0.14 ENSMUST00000054287.7
zinc finger and BTB domain containing 39
chr13_-_101768154 0.14 ENSMUST00000055518.6
phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
chr15_+_80977765 0.14 ENSMUST00000139517.1
ENSMUST00000042506.8
ENSMUST00000137255.1
small G protein signaling modulator 3
chr17_-_23645264 0.13 ENSMUST00000024696.7
matrix metallopeptidase 25
chr2_-_168741752 0.13 ENSMUST00000029060.4
ATPase, class II, type 9A
chrX_+_142228177 0.13 ENSMUST00000112914.1
nuclear transport factor 2-like export factor 2
chrX_-_8206475 0.13 ENSMUST00000089403.3
ENSMUST00000077595.5
ENSMUST00000089402.3
ENSMUST00000082320.5
porcupine homolog (Drosophila)
chr2_+_43555342 0.13 ENSMUST00000112826.1
ENSMUST00000050511.6
kynureninase (L-kynurenine hydrolase)
chr14_-_12823031 0.13 ENSMUST00000067491.6
ENSMUST00000177814.1
ENSMUST00000112658.1
ENSMUST00000112657.2
Ca2+-dependent secretion activator
chr5_-_116288978 0.12 ENSMUST00000050178.6
coiled-coil domain containing 60
chr4_-_58987095 0.12 ENSMUST00000030069.6
prostaglandin reductase 1
chr6_+_65590382 0.12 ENSMUST00000114236.1
TNFAIP3 interacting protein 3
chr9_+_92275746 0.12 ENSMUST00000126911.1
phospholipid scramblase 2
chr18_+_76930017 0.11 ENSMUST00000026487.4
immediate early response 3 interacting protein 1
chr10_-_64090241 0.11 ENSMUST00000133588.1
leucine rich repeat transmembrane neuronal 3
chr16_+_15637844 0.11 ENSMUST00000023352.8
protein kinase, DNA activated, catalytic polypeptide
chr2_+_105904629 0.10 ENSMUST00000037499.5
IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)
chr12_+_33314375 0.10 ENSMUST00000155386.1
ataxin 7-like 1
chr9_-_58159201 0.09 ENSMUST00000041477.7
immunoglobulin superfamily containing leucine-rich repeat
chr9_-_101198999 0.09 ENSMUST00000066773.7
protein phosphatase 2, regulatory subunit B'', alpha
chr2_+_73271925 0.08 ENSMUST00000090813.5
trans-acting transcription factor 9
chr5_-_116288944 0.08 ENSMUST00000086483.3
coiled-coil domain containing 60
chr15_-_88978958 0.08 ENSMUST00000042594.6
ENSMUST00000109368.1
megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)
chr7_-_64925560 0.08 ENSMUST00000149851.1
family with sequence similarity 189, member A1
chr3_-_59635733 0.08 ENSMUST00000177879.1
predicted gene 5709
chr7_-_104279732 0.07 ENSMUST00000051795.9
tripartite motif-containing 5
chr4_+_136357423 0.07 ENSMUST00000182167.1
predicted gene, 17388
chr7_-_45366714 0.07 ENSMUST00000107779.1
protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3
chr9_+_58488568 0.07 ENSMUST00000085658.4
RIKEN cDNA 6030419C18 gene
chr13_-_55528511 0.07 ENSMUST00000047877.4
docking protein 3
chr15_-_50889691 0.07 ENSMUST00000165201.2
ENSMUST00000184458.1
trichorhinophalangeal syndrome I (human)
chr17_+_34238914 0.06 ENSMUST00000167280.1
histocompatibility 2, O region beta locus
chr6_+_67115671 0.06 ENSMUST00000181304.1
RIKEN cDNA A430010J10 gene
chr11_+_117484368 0.05 ENSMUST00000092394.3
predicted gene 11733
chrX_-_100594860 0.05 ENSMUST00000053373.1
pyrimidinergic receptor P2Y, G-protein coupled, 4
chr10_+_19935223 0.05 ENSMUST00000129437.1
mitogen-activated protein kinase kinase kinase 5
chr6_-_130337502 0.05 ENSMUST00000088017.4
ENSMUST00000111998.2
killer cell lectin-like receptor, subfamily A, member 3
chr19_-_11081088 0.04 ENSMUST00000025636.6
membrane-spanning 4-domains, subfamily A, member 8A
chrX_+_9199865 0.04 ENSMUST00000069763.2
LanC lantibiotic synthetase component C-like 3 (bacterial)
chr4_+_155831272 0.04 ENSMUST00000139651.1
ENSMUST00000084097.5
aurora kinase A interacting protein 1
chr6_+_48613180 0.04 ENSMUST00000061720.4
zinc finger protein 775
chr2_-_131328982 0.04 ENSMUST00000110194.1
ring finger protein 24
chr19_+_53140430 0.04 ENSMUST00000111741.2
adducin 3 (gamma)
chr4_+_6365650 0.03 ENSMUST00000029912.4
ENSMUST00000103008.5
ENSMUST00000175769.1
ENSMUST00000108374.1
ENSMUST00000140830.1
syndecan binding protein
chr12_-_90738438 0.03 ENSMUST00000082432.3
deiodinase, iodothyronine, type II
chr15_-_50890041 0.03 ENSMUST00000077935.5
trichorhinophalangeal syndrome I (human)
chr15_-_89149557 0.02 ENSMUST00000088823.3
mitogen-activated protein kinase 11
chr17_+_34238896 0.02 ENSMUST00000095342.3
histocompatibility 2, O region beta locus
chr7_+_7171330 0.01 ENSMUST00000051435.7
zinc finger protein 418
chr11_+_43587040 0.01 ENSMUST00000056256.2
RIKEN cDNA 4933415A04 gene
chr12_+_71048338 0.01 ENSMUST00000135709.1
AT rich interactive domain 4A (RBP1-like)
chr10_-_67548944 0.01 ENSMUST00000075686.4
2-aminoethanethiol (cysteamine) dioxygenase
chr16_-_13730970 0.01 ENSMUST00000023364.6
phospholipase A2, group X
chr13_-_23430826 0.00 ENSMUST00000153753.1
ENSMUST00000141543.1
RIKEN cDNA C230035I16 gene
chr6_+_113483297 0.00 ENSMUST00000032422.5
cysteine-rich with EGF-like domains 1
chr4_+_155831630 0.00 ENSMUST00000105592.1
ENSMUST00000105591.1
aurora kinase A interacting protein 1

Network of associatons between targets according to the STRING database.

First level regulatory network of Pax4

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.0 GO:0000738 DNA catabolic process, exonucleolytic(GO:0000738)
0.1 0.4 GO:0072299 negative regulation of metanephric glomerulus development(GO:0072299) negative regulation of metanephric glomerular mesangial cell proliferation(GO:0072302) regulation of metanephric ureteric bud development(GO:2001074) positive regulation of metanephric ureteric bud development(GO:2001076)
0.1 0.3 GO:0019442 tryptophan catabolic process to acetyl-CoA(GO:0019442)
0.1 0.9 GO:0097264 self proteolysis(GO:0097264)
0.1 0.4 GO:1903690 negative regulation of wound healing, spreading of epidermal cells(GO:1903690)
0.0 0.3 GO:0016584 nucleosome positioning(GO:0016584)
0.0 0.2 GO:0043602 nitrate catabolic process(GO:0043602) nitric oxide catabolic process(GO:0046210) cellular organohalogen metabolic process(GO:0090345) cellular organofluorine metabolic process(GO:0090346)
0.0 0.2 GO:0007258 JUN phosphorylation(GO:0007258)
0.0 0.3 GO:0071763 nuclear membrane organization(GO:0071763)
0.0 0.8 GO:0010763 positive regulation of fibroblast migration(GO:0010763)
0.0 0.7 GO:0051639 actin filament network formation(GO:0051639)
0.0 0.3 GO:1902004 positive regulation of beta-amyloid formation(GO:1902004)
0.0 0.1 GO:0007525 somatic muscle development(GO:0007525)
0.0 0.1 GO:0099525 presynaptic dense core granule exocytosis(GO:0099525)
0.0 0.1 GO:0002581 negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II(GO:0002581) negative regulation of antigen processing and presentation of peptide antigen via MHC class II(GO:0002587)
0.0 0.1 GO:0048227 plasma membrane to endosome transport(GO:0048227)
0.0 0.1 GO:0060022 hard palate development(GO:0060022)
0.0 0.1 GO:0002326 B cell lineage commitment(GO:0002326)
0.0 0.1 GO:0006627 protein processing involved in protein targeting to mitochondrion(GO:0006627)
0.0 0.4 GO:0016486 peptide hormone processing(GO:0016486)
0.0 0.1 GO:0010459 negative regulation of heart rate(GO:0010459)
0.0 0.1 GO:0002756 MyD88-independent toll-like receptor signaling pathway(GO:0002756)
0.0 0.2 GO:0060019 radial glial cell differentiation(GO:0060019)
0.0 0.2 GO:0052697 flavonoid glucuronidation(GO:0052696) xenobiotic glucuronidation(GO:0052697)
0.0 0.0 GO:0070460 thyroid-stimulating hormone secretion(GO:0070460)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0042720 mitochondrial inner membrane peptidase complex(GO:0042720)
0.0 0.4 GO:0045180 basal cortex(GO:0045180)
0.0 1.0 GO:0015030 Cajal body(GO:0015030)
0.0 0.3 GO:0035327 transcriptionally active chromatin(GO:0035327)
0.0 0.1 GO:0005958 DNA-dependent protein kinase-DNA ligase 4 complex(GO:0005958)
0.0 0.5 GO:0000800 lateral element(GO:0000800)
0.0 0.1 GO:1990462 omegasome(GO:1990462)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.0 GO:0008859 exoribonuclease II activity(GO:0008859)
0.1 0.3 GO:0016822 hydrolase activity, acting on acid carbon-carbon bonds(GO:0016822) hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances(GO:0016823)
0.1 0.2 GO:0016909 JUN kinase activity(GO:0004705) SAP kinase activity(GO:0016909)
0.1 0.4 GO:0044729 hemi-methylated DNA-binding(GO:0044729)
0.0 0.1 GO:0047522 13-prostaglandin reductase activity(GO:0036132) 15-oxoprostaglandin 13-oxidase activity(GO:0047522)
0.0 0.2 GO:0047726 nitric oxide dioxygenase activity(GO:0008941) oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor(GO:0016708) iron-cytochrome-c reductase activity(GO:0047726)
0.0 0.8 GO:0004708 MAP kinase kinase activity(GO:0004708)
0.0 0.1 GO:0004677 DNA-dependent protein kinase activity(GO:0004677)
0.0 0.9 GO:0004198 calcium-dependent cysteine-type endopeptidase activity(GO:0004198)
0.0 0.1 GO:0043125 ErbB-3 class receptor binding(GO:0043125)
0.0 1.1 GO:0003785 actin monomer binding(GO:0003785)
0.0 0.1 GO:0004030 aldehyde dehydrogenase [NAD(P)+] activity(GO:0004030)
0.0 0.1 GO:0015065 uridine nucleotide receptor activity(GO:0015065) G-protein coupled pyrimidinergic nucleotide receptor activity(GO:0071553)
0.0 0.4 GO:0030159 receptor signaling complex scaffold activity(GO:0030159)
0.0 0.3 GO:0005521 lamin binding(GO:0005521)
0.0 0.0 GO:0004800 thyroxine 5'-deiodinase activity(GO:0004800)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.8 PID P38 ALPHA BETA PATHWAY Regulation of p38-alpha and p38-beta
0.0 1.0 PID PTP1B PATHWAY Signaling events mediated by PTP1B

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 REACTOME PEPTIDE HORMONE BIOSYNTHESIS Genes involved in Peptide hormone biosynthesis
0.0 0.3 REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION Genes involved in Apoptosis induced DNA fragmentation
0.0 1.0 REACTOME INTERFERON ALPHA BETA SIGNALING Genes involved in Interferon alpha/beta signaling
0.0 0.3 REACTOME TRYPTOPHAN CATABOLISM Genes involved in Tryptophan catabolism
0.0 0.3 REACTOME ACTIVATION OF THE AP1 FAMILY OF TRANSCRIPTION FACTORS Genes involved in Activation of the AP-1 family of transcription factors
0.0 0.2 REACTOME GLUCURONIDATION Genes involved in Glucuronidation