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12D miR HR13_24

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Results for ACUGCAU

Z-value: 0.50

Motif logo

miRNA associated with seed ACUGCAU

NamemiRBASE accession
MIMAT0000679

Activity profile of ACUGCAU motif

Sorted Z-values of ACUGCAU motif

Promoter Log-likelihood Transcript Gene Gene Info
chr10_+_4611971 1.05 ENSMUST00000105590.1
ENSMUST00000067086.7
estrogen receptor 1 (alpha)
chr8_-_4779513 0.76 ENSMUST00000022945.7
Shc SH2-domain binding protein 1
chr16_+_7069825 0.54 ENSMUST00000056416.7
RNA binding protein, fox-1 homolog (C. elegans) 1
chr5_-_134747241 0.46 ENSMUST00000015138.9
elastin
chr9_-_22389113 0.44 ENSMUST00000040912.7
anillin, actin binding protein
chr3_+_108537523 0.43 ENSMUST00000029485.5
RIKEN cDNA 1700013F07 gene
chr16_-_57754707 0.41 ENSMUST00000089332.4
collagen, type VIII, alpha 1
chr4_-_91372028 0.40 ENSMUST00000107110.1
ENSMUST00000008633.8
ENSMUST00000107118.1
ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
chr18_+_60925612 0.39 ENSMUST00000102888.3
ENSMUST00000025519.4
calcium/calmodulin-dependent protein kinase II alpha
chr6_-_24956106 0.34 ENSMUST00000127247.2
transmembrane protein 229A
chr12_+_40446050 0.31 ENSMUST00000037488.6
dedicator of cytokinesis 4
chr6_+_34709442 0.30 ENSMUST00000115021.1
caldesmon 1
chr3_-_26133734 0.27 ENSMUST00000108308.3
ENSMUST00000075054.4
neuroligin 1
chr5_+_110286306 0.25 ENSMUST00000007296.5
ENSMUST00000112482.1
polymerase (DNA directed), epsilon
chr15_-_64312636 0.24 ENSMUST00000177083.1
ENSMUST00000177371.1
ArfGAP with SH3 domain, ankyrin repeat and PH domain1
chr7_+_113765998 0.24 ENSMUST00000046687.9
spondin 1, (f-spondin) extracellular matrix protein
chr1_+_34801704 0.24 ENSMUST00000047664.9
Rho guanine nucleotide exchange factor (GEF) 4
chr2_+_102658640 0.23 ENSMUST00000080210.3
solute carrier family 1 (glial high affinity glutamate transporter), member 2
chr6_+_103510874 0.22 ENSMUST00000066905.6
cell adhesion molecule with homology to L1CAM
chr16_+_14361552 0.21 ENSMUST00000100167.3
ENSMUST00000154748.1
ENSMUST00000134776.1
ATP-binding cassette, sub-family C (CFTR/MRP), member 1
chr15_-_73184840 0.20 ENSMUST00000044113.10
argonaute RISC catalytic subunit 2
chr14_-_46822232 0.20 ENSMUST00000111817.1
ENSMUST00000079314.5
glia maturation factor, beta
chr5_-_24030649 0.19 ENSMUST00000030849.6
family with sequence similarity 126, member A
chr19_+_18670780 0.19 ENSMUST00000025632.9
RIKEN cDNA 2410127L17 gene
chr2_+_12924041 0.17 ENSMUST00000134794.1
ENSMUST00000028063.4
ENSMUST00000154269.1
ENSMUST00000114796.3
phosphotriesterase related
chr1_+_187997821 0.17 ENSMUST00000027906.6
estrogen-related receptor gamma
chr16_+_16896469 0.17 ENSMUST00000027373.9
protein phosphatase 1F (PP2C domain containing)
chr16_-_32003122 0.17 ENSMUST00000023457.5
SUMO/sentrin specific peptidase 5
chr5_+_146384947 0.16 ENSMUST00000110600.1
ENSMUST00000016143.7
WAS protein family, member 3
chr6_-_47594967 0.15 ENSMUST00000081721.6
ENSMUST00000114618.1
ENSMUST00000114616.1
enhancer of zeste homolog 2 (Drosophila)
chr14_-_79771305 0.15 ENSMUST00000039568.5
protocadherin 8
chr8_-_116732991 0.15 ENSMUST00000109102.2
chromodomain protein, Y chromosome-like 2
chr11_+_105292637 0.15 ENSMUST00000100335.3
ENSMUST00000021038.4
mannose receptor, C type 2
chr13_-_47106176 0.14 ENSMUST00000021807.6
ENSMUST00000135278.1
DEK oncogene (DNA binding)
chr6_-_131388417 0.13 ENSMUST00000032309.6
ENSMUST00000087865.2
Y box protein 3
chr4_-_88438900 0.13 ENSMUST00000132493.1
ENSMUST00000030221.2
ENSMUST00000151280.1
protein tyrosine phosphatase-like A domain containing 2
chr4_+_57637816 0.13 ENSMUST00000150412.1
predicted gene 20459
chr2_+_65620829 0.12 ENSMUST00000028377.7
sodium channel, voltage-gated, type II, alpha 1
chr14_-_98169542 0.11 ENSMUST00000069334.7
ENSMUST00000071533.6
dachshund 1 (Drosophila)
chr1_-_119837613 0.11 ENSMUST00000064091.5
protein tyrosine phosphatase, non-receptor type 4
chr14_+_84443553 0.11 ENSMUST00000071370.5
protocadherin 17
chr6_-_99666762 0.10 ENSMUST00000032151.2
eukaryotic translation initiation factor 4E member 3
chr8_-_81014866 0.10 ENSMUST00000042724.6
ubiquitin specific peptidase 38
chr14_+_101729907 0.10 ENSMUST00000100337.3
LIM domain only 7
chr10_-_123196916 0.10 ENSMUST00000020334.7
ubiquitin specific peptidase 15
chr8_-_80057989 0.10 ENSMUST00000079038.2
Hedgehog-interacting protein
chr10_+_110920170 0.10 ENSMUST00000020403.5
cysteine and glycine-rich protein 2
chr9_-_32541589 0.09 ENSMUST00000016231.7
Friend leukemia integration 1
chr3_+_63976106 0.09 ENSMUST00000029405.7
guanine monophosphate synthetase
chrX_+_166238901 0.09 ENSMUST00000112235.1
glycoprotein m6b
chr7_+_90130227 0.08 ENSMUST00000049537.7
phosphatidylinositol binding clathrin assembly protein
chr1_+_37997975 0.08 ENSMUST00000027252.7
eukaryotic translation initiation factor 5B
chr1_-_190170671 0.08 ENSMUST00000175916.1
prospero-related homeobox 1
chr9_-_72111827 0.07 ENSMUST00000183404.1
ENSMUST00000184783.1
transcription factor 12
chr5_-_113908685 0.07 ENSMUST00000004646.6
coronin, actin binding protein 1C
chr7_+_128523576 0.07 ENSMUST00000033136.7
BCL2-associated athanogene 3
chr4_-_132843111 0.07 ENSMUST00000105919.1
ENSMUST00000030702.7
protein phosphatase 1, regulatory (inhibitor) subunit 8
chr3_+_54693088 0.07 ENSMUST00000170552.1
suppressor of Ty 20
chr15_-_96699698 0.06 ENSMUST00000023099.6
solute carrier family 38, member 2
chr10_+_42860348 0.06 ENSMUST00000063063.7
sex comb on midleg-like 4 (Drosophila)
chr1_+_59482133 0.06 ENSMUST00000114246.2
ENSMUST00000037105.6
frizzled homolog 7 (Drosophila)
chr9_-_71485893 0.06 ENSMUST00000034720.5
polymerase (RNA) II (DNA directed) polypeptide M
chr4_+_55350043 0.06 ENSMUST00000030134.8
RAD23b homolog (S. cerevisiae)
chr16_-_84735742 0.05 ENSMUST00000116584.1
mitochondrial ribosomal protein L39
chr16_+_42907563 0.05 ENSMUST00000151244.1
ENSMUST00000114694.2
zinc finger and BTB domain containing 20
chr12_-_27342696 0.05 ENSMUST00000079063.5
SRY-box containing gene 11
chr5_+_108065742 0.05 ENSMUST00000081567.4
ENSMUST00000170319.1
ENSMUST00000112626.1
metal response element binding transcription factor 2
chr4_-_133753611 0.04 ENSMUST00000145664.2
ENSMUST00000105897.3
AT rich interactive domain 1A (SWI-like)
chr5_-_100500592 0.04 ENSMUST00000149714.1
ENSMUST00000046154.5
lin-54 homolog (C. elegans)
chr2_+_119675062 0.04 ENSMUST00000028767.8
Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
chr11_-_85235065 0.04 ENSMUST00000018625.9
amyloid beta precursor protein (cytoplasmic tail) binding protein 2
chr13_+_118714678 0.04 ENSMUST00000022246.8
fibroblast growth factor 10
chrX_+_112604274 0.04 ENSMUST00000071814.6
zinc finger protein 711
chr11_+_80209019 0.04 ENSMUST00000077451.7
ENSMUST00000055056.9
ras homolog gene family, member T1
chr6_-_35539765 0.04 ENSMUST00000031866.5
myotrophin
chr1_-_160792908 0.04 ENSMUST00000028049.7
RAB GTPase activating protein 1-like
chr5_+_86804214 0.04 ENSMUST00000119339.1
ENSMUST00000120498.1
YTH domain containing 1
chr4_+_66827545 0.04 ENSMUST00000048096.5
ENSMUST00000107365.2
toll-like receptor 4
chr18_+_40258361 0.04 ENSMUST00000091927.4
potassium channel tetramerisation domain containing 16
chr5_-_135934590 0.04 ENSMUST00000055808.5
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
chrX_-_51018011 0.03 ENSMUST00000053593.7
RAP2C, member of RAS oncogene family
chr1_-_128417352 0.03 ENSMUST00000027602.8
ENSMUST00000064309.7
aspartyl-tRNA synthetase
chr15_+_96287518 0.03 ENSMUST00000134985.2
ENSMUST00000096250.4
AT rich interactive domain 2 (ARID, RFX-like)
chr4_+_57845240 0.03 ENSMUST00000102903.1
ENSMUST00000107598.3
A kinase (PRKA) anchor protein 2
chr2_+_122028544 0.03 ENSMUST00000028668.7
eukaryotic translation initiation factor 3, subunit J1
chr7_-_98309471 0.03 ENSMUST00000033020.7
alkaline ceramidase 3
chr1_+_172376528 0.03 ENSMUST00000052455.2
phosphatidylinositol glycan anchor biosynthesis, class M
chr16_+_56075399 0.03 ENSMUST00000089362.2
ENSMUST00000089360.3
ENSMUST00000049128.6
SUMO1/sentrin specific peptidase 7
chr19_-_21472552 0.03 ENSMUST00000087600.3
guanine deaminase
chr17_+_3326552 0.03 ENSMUST00000169838.1
T cell lymphoma invasion and metastasis 2
chr1_-_78197112 0.03 ENSMUST00000087086.6
paired box gene 3
chr9_-_71592265 0.03 ENSMUST00000166843.1
ENSMUST00000163998.1
ENSMUST00000169573.1
GRINL1A complex locus
myocardial zonula adherens protein
chr11_-_28584260 0.02 ENSMUST00000093253.3
ENSMUST00000109502.2
ENSMUST00000042534.8
coiled-coil domain containing 85A
chr7_+_120677579 0.02 ENSMUST00000060175.6
cDNA sequence BC030336
chr9_-_107231816 0.02 ENSMUST00000044532.4
dedicator of cyto-kinesis 3
chr8_+_114205590 0.02 ENSMUST00000049509.6
ENSMUST00000150963.1
vesicle amine transport protein 1 homolog-like (T. californica)
chr15_-_36794498 0.02 ENSMUST00000110361.1
ENSMUST00000022894.7
ENSMUST00000110359.1
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
chr7_+_66109474 0.02 ENSMUST00000036372.6
chondroitin sulfate synthase 1
chr15_-_93336800 0.02 ENSMUST00000080299.6
YY1 associated factor 2
chrX_-_136743675 0.01 ENSMUST00000166478.1
ENSMUST00000113097.1
mortality factor 4 like 2
chr5_-_51553896 0.01 ENSMUST00000132734.1
peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
chr3_-_108911687 0.01 ENSMUST00000029480.8
PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
chr9_-_91365756 0.01 ENSMUST00000034927.6
zinc finger protein of the cerebellum 1
chr13_+_55693082 0.01 ENSMUST00000057844.8
RIKEN cDNA B230219D22 gene
chr3_-_139075178 0.01 ENSMUST00000098574.2
ENSMUST00000029796.6
RAP1, GTP-GDP dissociation stimulator 1
chr7_-_89338709 0.01 ENSMUST00000137723.1
ENSMUST00000117852.1
ENSMUST00000041968.3
transmembrane protein 135
chr11_+_83850832 0.01 ENSMUST00000021016.3
HNF1 homeobox B
chr11_-_82890541 0.00 ENSMUST00000092844.6
ENSMUST00000021033.9
ENSMUST00000018985.8
RAD51 homolog D
chr19_+_16132812 0.00 ENSMUST00000025541.5
guanine nucleotide binding protein, alpha q polypeptide
chrX_-_41911877 0.00 ENSMUST00000047037.8
THO complex 2

Network of associatons between targets according to the STRING database.

First level regulatory network of ACUGCAU

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.1 GO:0060523 prostate epithelial cord elongation(GO:0060523)
0.1 0.4 GO:1904170 regulation of bleb assembly(GO:1904170)
0.1 0.3 GO:0099543 positive regulation of circadian sleep/wake cycle, wakefulness(GO:0010841) retrograde trans-synaptic signaling(GO:0098917) trans-synaptic signaling by soluble gas(GO:0099543)
0.1 0.2 GO:0045004 DNA replication proofreading(GO:0045004)
0.1 0.3 GO:1904694 negative regulation of vascular smooth muscle contraction(GO:1904694)
0.1 0.2 GO:0042939 glutathione transport(GO:0034635) oligopeptide transmembrane transport(GO:0035672) tripeptide transport(GO:0042939)
0.1 0.2 GO:0071707 immunoglobulin heavy chain V-D-J recombination(GO:0071707)
0.1 0.2 GO:0035279 mRNA cleavage involved in gene silencing by miRNA(GO:0035279) mRNA cleavage involved in gene silencing(GO:0098795)
0.0 0.2 GO:1903527 positive regulation of membrane tubulation(GO:1903527)
0.0 0.0 GO:0060615 fibroblast growth factor receptor signaling pathway involved in mammary gland specification(GO:0060595) mammary gland bud formation(GO:0060615) branch elongation involved in salivary gland morphogenesis(GO:0060667) mesenchymal cell differentiation involved in lung development(GO:0060915)
0.0 0.2 GO:0070777 D-aspartate transport(GO:0070777) D-aspartate import(GO:0070779)
0.0 0.4 GO:0099628 receptor diffusion trapping(GO:0098953) postsynaptic neurotransmitter receptor diffusion trapping(GO:0098970) neurotransmitter receptor diffusion trapping(GO:0099628)
0.0 0.1 GO:1902219 negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress(GO:1902219)
0.0 0.1 GO:0090425 hepatocyte cell migration(GO:0002194) branching involved in pancreas morphogenesis(GO:0061114) acinar cell differentiation(GO:0090425) positive regulation of forebrain neuron differentiation(GO:2000979)
0.0 0.2 GO:0034316 negative regulation of Arp2/3 complex-mediated actin nucleation(GO:0034316)
0.0 0.1 GO:0060244 negative regulation of cell proliferation involved in contact inhibition(GO:0060244)
0.0 0.5 GO:2001014 regulation of skeletal muscle cell differentiation(GO:2001014)
0.0 0.1 GO:1904684 negative regulation of metalloendopeptidase activity(GO:1904684)
0.0 0.2 GO:0016576 histone dephosphorylation(GO:0016576)
0.0 0.1 GO:0035616 histone H2B conserved C-terminal lysine deubiquitination(GO:0035616)
0.0 0.1 GO:2001032 cell quiescence(GO:0044838) regulation of double-strand break repair via nonhomologous end joining(GO:2001032)
0.0 0.1 GO:0001712 ectodermal cell fate commitment(GO:0001712)
0.0 0.1 GO:0006177 GMP biosynthetic process(GO:0006177)
0.0 0.1 GO:0000715 nucleotide-excision repair, DNA damage recognition(GO:0000715)
0.0 0.1 GO:0051612 negative regulation of neurotransmitter uptake(GO:0051581) negative regulation of serotonin uptake(GO:0051612)
0.0 0.1 GO:0051643 endoplasmic reticulum localization(GO:0051643)
0.0 0.1 GO:0060023 soft palate development(GO:0060023) closure of optic fissure(GO:0061386)
0.0 0.0 GO:2000812 regulation of barbed-end actin filament capping(GO:2000812)
0.0 0.0 GO:0042231 interleukin-1 biosynthetic process(GO:0042222) interleukin-13 biosynthetic process(GO:0042231)
0.0 0.2 GO:0016926 protein desumoylation(GO:0016926)
0.0 0.1 GO:0061086 negative regulation of histone H3-K27 methylation(GO:0061086)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.1 GO:0097550 transcriptional preinitiation complex(GO:0097550)
0.1 0.5 GO:0071953 elastic fiber(GO:0071953)
0.1 0.4 GO:0099524 region of cytosol(GO:0099522) postsynaptic cytosol(GO:0099524)
0.1 0.4 GO:0005826 actomyosin contractile ring(GO:0005826)
0.0 0.2 GO:0008622 epsilon DNA polymerase complex(GO:0008622)
0.0 0.3 GO:0030478 actin cap(GO:0030478)
0.0 0.1 GO:0070381 endosome to plasma membrane transport vesicle(GO:0070381)
0.0 0.2 GO:0070578 RISC-loading complex(GO:0070578)
0.0 0.3 GO:0017146 NMDA selective glutamate receptor complex(GO:0017146)
0.0 0.1 GO:0071942 XPC complex(GO:0071942)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.1 GO:0031798 type 1 metabotropic glutamate receptor binding(GO:0031798) RNA polymerase II transcription factor activity, estrogen-activated sequence-specific DNA binding(GO:0038052)
0.1 0.2 GO:0035673 oligopeptide transmembrane transporter activity(GO:0035673)
0.1 0.2 GO:0070139 ubiquitin-like protein-specific endopeptidase activity(GO:0070137) SUMO-specific endopeptidase activity(GO:0070139)
0.0 0.2 GO:0015501 glutamate:sodium symporter activity(GO:0015501)
0.0 0.4 GO:0009931 calcium-dependent protein serine/threonine kinase activity(GO:0009931)
0.0 0.2 GO:0008310 single-stranded DNA 3'-5' exodeoxyribonuclease activity(GO:0008310)
0.0 0.2 GO:0033192 calmodulin-dependent protein phosphatase activity(GO:0033192)
0.0 0.1 GO:0097108 hedgehog family protein binding(GO:0097108)
0.0 0.2 GO:0046976 histone methyltransferase activity (H3-K27 specific)(GO:0046976)
0.0 0.2 GO:0000340 RNA 7-methylguanosine cap binding(GO:0000340)
0.0 0.1 GO:0061649 ubiquitinated histone binding(GO:0061649)
0.0 0.1 GO:0004726 non-membrane spanning protein tyrosine phosphatase activity(GO:0004726)
0.0 0.2 GO:0071933 Arp2/3 complex binding(GO:0071933)
0.0 0.1 GO:0001075 transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly(GO:0001075)
0.0 0.8 GO:0042169 SH2 domain binding(GO:0042169)
0.0 0.3 GO:0042043 neurexin family protein binding(GO:0042043)
0.0 0.0 GO:1990269 RNA polymerase II C-terminal domain phosphoserine binding(GO:1990269)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.1 PID FOXM1 PATHWAY FOXM1 transcription factor network
0.0 0.4 ST WNT CA2 CYCLIC GMP PATHWAY Wnt/Ca2+/cyclic GMP signaling.

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.0 REACTOME NUCLEAR SIGNALING BY ERBB4 Genes involved in Nuclear signaling by ERBB4
0.0 0.4 REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF CAMKII Genes involved in CREB phosphorylation through the activation of CaMKII
0.0 0.2 REACTOME REPAIR SYNTHESIS FOR GAP FILLING BY DNA POL IN TC NER Genes involved in Repair synthesis for gap-filling by DNA polymerase in TC-NER