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12D miR HR13_24

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Results for Rara

Z-value: 0.54

Motif logo

Transcription factors associated with Rara

Gene Symbol Gene ID Gene Info
ENSMUSG00000037992.10 retinoic acid receptor, alpha

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Raramm10_v2_chr11_+_98927785_989278180.892.9e-04Click!

Activity profile of Rara motif

Sorted Z-values of Rara motif

Promoter Log-likelihood Transcript Gene Gene Info
chr10_+_4611971 2.28 ENSMUST00000105590.1
ENSMUST00000067086.7
estrogen receptor 1 (alpha)
chr14_+_64588112 0.95 ENSMUST00000181808.1
RIKEN cDNA A930011O12 gene
chr7_-_141429351 0.84 ENSMUST00000164387.1
ENSMUST00000137488.1
ENSMUST00000084436.3
cell cycle exit and neuronal differentiation 1
chr14_+_55618023 0.68 ENSMUST00000002395.7
REC8 homolog (yeast)
chr12_+_87026564 0.68 ENSMUST00000110187.1
ENSMUST00000156162.1
transmembrane protein 63c
chr11_+_98960412 0.63 ENSMUST00000107473.2
retinoic acid receptor, alpha
chr5_+_87925579 0.60 ENSMUST00000001667.6
ENSMUST00000113267.1
casein kappa
chr15_+_82256023 0.56 ENSMUST00000143238.1
RIKEN cDNA 1500009C09 gene
chr7_-_141429433 0.51 ENSMUST00000124444.1
cell cycle exit and neuronal differentiation 1
chr5_+_135806859 0.44 ENSMUST00000126232.1
serine/arginine repetitive matrix 3
chr2_-_5012716 0.44 ENSMUST00000027980.7
minichromosome maintenance deficient 10 (S. cerevisiae)
chr3_+_79884496 0.35 ENSMUST00000118853.1
family with sequence similarity 198, member B
chr17_-_56133817 0.32 ENSMUST00000167545.1
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
chr5_+_87925624 0.31 ENSMUST00000113271.2
casein kappa
chr2_+_5845243 0.30 ENSMUST00000127116.1
nudix (nucleoside diphosphate linked moiety X)-type motif 5
chr4_-_141599835 0.27 ENSMUST00000141518.1
ENSMUST00000127455.1
ENSMUST00000105784.1
ENSMUST00000147785.1
filamin binding LIM protein 1
chr6_+_91157373 0.24 ENSMUST00000155007.1
histone deacetylase 11
chr2_+_5845017 0.24 ENSMUST00000026927.3
ENSMUST00000179748.1
nudix (nucleoside diphosphate linked moiety X)-type motif 5
chr7_-_44670820 0.24 ENSMUST00000048102.7
myosin, heavy polypeptide 14
chr2_-_25617672 0.22 ENSMUST00000028309.3
RIKEN cDNA 4921530D09 gene
chr8_+_69659263 0.22 ENSMUST00000169125.1
zinc finger protein 964
chr17_-_32388885 0.19 ENSMUST00000087703.5
ENSMUST00000170603.1
widely-interspaced zinc finger motifs
chr6_-_124542281 0.18 ENSMUST00000159463.1
ENSMUST00000162844.1
ENSMUST00000160505.1
ENSMUST00000162443.1
complement component 1, s subcomponent
chr9_+_54586450 0.18 ENSMUST00000167866.1
isocitrate dehydrogenase 3 (NAD+) alpha
chr7_-_141010759 0.18 ENSMUST00000026565.6
interferon induced transmembrane protein 3
chr8_-_119778380 0.16 ENSMUST00000049156.5
TBC/LysM associated domain containing 1
chr3_+_79884931 0.15 ENSMUST00000135021.1
family with sequence similarity 198, member B
chr2_-_34754364 0.15 ENSMUST00000142436.1
ENSMUST00000113099.3
ENSMUST00000028224.8
GTPase activating protein and VPS9 domains 1
chr11_+_3488275 0.15 ENSMUST00000064265.6
phospholipase A2, group III
chrX_+_106187100 0.13 ENSMUST00000081593.6
phosphoglycerate kinase 1
chr9_-_109074049 0.12 ENSMUST00000161521.1
ENSMUST00000045011.2
ATR interacting protein
chr3_+_79884576 0.12 ENSMUST00000145992.1
family with sequence similarity 198, member B
chrX_-_75874536 0.11 ENSMUST00000033547.7
plastin 3 (T-isoform)
chr12_-_54862783 0.10 ENSMUST00000078124.7
cofilin 2, muscle
chr14_-_74947865 0.09 ENSMUST00000088970.5
leucine-rich repeats and calponin homology (CH) domain containing 1
chr7_+_120635176 0.09 ENSMUST00000033176.5
ubiquinol cytochrome c reductase core protein 2
chr4_+_32238950 0.08 ENSMUST00000037416.6
BTB and CNC homology 2
chr10_+_79910856 0.08 ENSMUST00000181321.1
predicted gene, 26602
chr14_-_70207637 0.08 ENSMUST00000022682.5
sorbin and SH3 domain containing 3
chr19_-_7241216 0.07 ENSMUST00000025675.9
N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
chr2_+_181365384 0.07 ENSMUST00000108807.2
zinc finger, CCCH-type with G patch domain
chr3_+_152210458 0.06 ENSMUST00000166984.1
ENSMUST00000106121.1
far upstream element (FUSE) binding protein 1
chr2_+_173719415 0.06 ENSMUST00000073081.5
RIKEN cDNA 1700010B08 gene
chr4_+_141444654 0.06 ENSMUST00000006377.6
zinc finger and BTB domain containing 17
chr13_+_49421229 0.05 ENSMUST00000021817.8
inositol 1,3,4,5,6-pentakisphosphate 2-kinase
chr5_+_53590215 0.05 ENSMUST00000037618.6
recombination signal binding protein for immunoglobulin kappa J region
chr17_+_34593388 0.05 ENSMUST00000174532.1
pre B cell leukemia homeobox 2
chr15_-_102366314 0.04 ENSMUST00000078508.5
Sp7 transcription factor 7
chr2_+_26319741 0.04 ENSMUST00000066889.6
G-protein signalling modulator 1 (AGS3-like, C. elegans)
chr14_-_30353468 0.03 ENSMUST00000112249.1
calcium channel, voltage-dependent, L type, alpha 1D subunit
chr8_-_94876269 0.02 ENSMUST00000046461.7
docking protein 4
chr14_-_16575456 0.01 ENSMUST00000063750.6
retinoic acid receptor, beta
chr11_+_4986824 0.01 ENSMUST00000009234.9
ENSMUST00000109897.1
adaptor protein complex AP-1, beta 1 subunit
chr6_+_18848571 0.01 ENSMUST00000056398.8
N(alpha)-acetyltransferase 38, NatC auxiliary subunit
chr17_-_67632707 0.01 ENSMUST00000097290.2
leucine rich repeat containing 30
chr9_+_75410145 0.01 ENSMUST00000180533.1
ENSMUST00000180574.1
RIKEN cDNA 4933433G15 gene
chr4_+_32238713 0.00 ENSMUST00000108180.2
BTB and CNC homology 2
chr1_-_163403627 0.00 ENSMUST00000045138.4
golgin, RAB6-interacting
chr7_-_18656720 0.00 ENSMUST00000094793.5
ENSMUST00000182128.1
pregnancy-specific glycoprotein 21

Network of associatons between targets according to the STRING database.

First level regulatory network of Rara

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 2.3 GO:0060523 prostate epithelial cord elongation(GO:0060523)
0.5 1.4 GO:0021933 radial glia guided migration of cerebellar granule cell(GO:0021933)
0.2 0.6 GO:0060010 Sertoli cell fate commitment(GO:0060010)
0.1 0.5 GO:0006014 D-ribose metabolic process(GO:0006014) pentose catabolic process(GO:0019323)
0.0 0.7 GO:0007141 male meiosis I(GO:0007141)
0.0 0.1 GO:0030043 actin filament fragmentation(GO:0030043)
0.0 0.2 GO:0006102 isocitrate metabolic process(GO:0006102)
0.0 0.2 GO:0010571 positive regulation of nuclear cell cycle DNA replication(GO:0010571)
0.0 0.1 GO:0035480 Notch signaling pathway involved in heart induction(GO:0003137) regulation of Notch signaling pathway involved in heart induction(GO:0035480) positive regulation of Notch signaling pathway involved in heart induction(GO:0035481) arterial endothelial cell fate commitment(GO:0060844) blood vessel endothelial cell fate commitment(GO:0060846) endothelial cell fate specification(GO:0060847) Notch signaling pathway involved in arterial endothelial cell fate commitment(GO:0060853) blood vessel lumenization(GO:0072554) blood vessel endothelial cell fate specification(GO:0097101) regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment(GO:1901295) regulation of canonical Wnt signaling pathway involved in heart development(GO:1905066)
0.0 0.3 GO:0033623 regulation of integrin activation(GO:0033623)
0.0 0.1 GO:0019372 lipoxygenase pathway(GO:0019372)
0.0 0.9 GO:0007595 lactation(GO:0007595)
0.0 0.1 GO:0006627 protein processing involved in protein targeting to mitochondrion(GO:0006627)
0.0 0.4 GO:0006270 DNA replication initiation(GO:0006270)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 2.3 GO:0097550 transcriptional preinitiation complex(GO:0097550)
0.1 0.7 GO:0034991 nuclear meiotic cohesin complex(GO:0034991)
0.1 0.4 GO:0031298 replication fork protection complex(GO:0031298)
0.0 0.2 GO:0097513 myosin II filament(GO:0097513)
0.0 0.1 GO:0002193 MAML1-RBP-Jkappa- ICN1 complex(GO:0002193)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 2.3 GO:0031798 type 1 metabotropic glutamate receptor binding(GO:0031798) RNA polymerase II transcription factor activity, estrogen-activated sequence-specific DNA binding(GO:0038052)
0.2 0.5 GO:0044715 8-oxo-dGDP phosphatase activity(GO:0044715)
0.0 0.6 GO:0035014 phosphatidylinositol 3-kinase regulator activity(GO:0035014)
0.0 0.2 GO:0004449 isocitrate dehydrogenase (NAD+) activity(GO:0004449)
0.0 0.1 GO:0016774 phosphotransferase activity, carboxyl group as acceptor(GO:0016774)
0.0 0.4 GO:0003688 DNA replication origin binding(GO:0003688)
0.0 0.7 GO:0005227 calcium activated cation channel activity(GO:0005227)
0.0 0.3 GO:0030215 semaphorin receptor binding(GO:0030215)
0.0 0.2 GO:0030898 actin-dependent ATPase activity(GO:0030898)
0.0 0.1 GO:1990189 peptide-serine-N-acetyltransferase activity(GO:1990189)
0.0 0.3 GO:0031005 filamin binding(GO:0031005)
0.0 0.2 GO:0031078 histone deacetylase activity (H3-K14 specific)(GO:0031078) NAD-dependent histone deacetylase activity (H3-K14 specific)(GO:0032041)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 2.3 PID FOXM1 PATHWAY FOXM1 transcription factor network
0.0 0.6 PID RXR VDR PATHWAY RXR and RAR heterodimerization with other nuclear receptor

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 2.3 REACTOME NUCLEAR SIGNALING BY ERBB4 Genes involved in Nuclear signaling by ERBB4
0.0 0.2 REACTOME CREATION OF C4 AND C2 ACTIVATORS Genes involved in Creation of C4 and C2 activators
0.0 0.6 REACTOME ACTIVATION OF ATR IN RESPONSE TO REPLICATION STRESS Genes involved in Activation of ATR in response to replication stress
0.0 0.3 REACTOME CELL EXTRACELLULAR MATRIX INTERACTIONS Genes involved in Cell-extracellular matrix interactions