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12D miR HR13_24

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Results for Hoxb1

Z-value: 0.66

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Transcription factors associated with Hoxb1

Gene Symbol Gene ID Gene Info
ENSMUSG00000018973.2 homeobox B1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Hoxb1mm10_v2_chr11_+_96365752_963657520.748.6e-03Click!

Activity profile of Hoxb1 motif

Sorted Z-values of Hoxb1 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr9_+_65890237 1.42 ENSMUST00000045802.6
RIKEN cDNA 2810417H13 gene
chrX_+_110814390 1.13 ENSMUST00000078229.3
POU domain, class 3, transcription factor 4
chr4_-_91399984 1.10 ENSMUST00000102799.3
ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
chr8_-_105471481 0.84 ENSMUST00000014990.6
tubulin polymerization-promoting protein family member 3
chr7_+_73391160 0.82 ENSMUST00000128471.1
RGM domain family, member A
chr19_-_41743665 0.80 ENSMUST00000025993.3
slit homolog 1 (Drosophila)
chr1_-_119053339 0.72 ENSMUST00000161301.1
ENSMUST00000161451.1
ENSMUST00000162607.1
GLI-Kruppel family member GLI2
chr6_-_136875794 0.56 ENSMUST00000032342.1
matrix Gla protein
chr3_-_88762244 0.49 ENSMUST00000183267.1
synaptotagmin XI
chrX_+_166344692 0.44 ENSMUST00000112223.1
ENSMUST00000112224.1
ENSMUST00000112229.2
ENSMUST00000112228.1
ENSMUST00000112227.2
ENSMUST00000112226.2
glycoprotein m6b
chr1_-_119053619 0.43 ENSMUST00000062483.8
GLI-Kruppel family member GLI2
chr10_+_127677064 0.38 ENSMUST00000118612.1
ENSMUST00000048099.4
transmembrane protein 194
chr7_+_48789003 0.36 ENSMUST00000118927.1
ENSMUST00000125280.1
zinc finger, DHHC domain containing 13
chr10_-_88605017 0.36 ENSMUST00000119185.1
ENSMUST00000121629.1
myosin binding protein C, slow-type
chr5_+_37735519 0.35 ENSMUST00000073554.3
cytokine-like 1
chr2_+_124610573 0.34 ENSMUST00000103239.3
ENSMUST00000103240.2
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
chr7_-_78577771 0.33 ENSMUST00000039438.7
neurotrophic tyrosine kinase, receptor, type 3
chr5_+_42067960 0.32 ENSMUST00000087332.4
predicted gene 16223
chr18_-_56562187 0.32 ENSMUST00000171844.2
aldehyde dehydrogenase family 7, member A1
chr14_-_69284982 0.31 ENSMUST00000183882.1
ENSMUST00000037064.4
solute carrier family 25, member 37
chr10_-_127666673 0.30 ENSMUST00000026469.2
Ngfi-A binding protein 2
chr3_+_58525821 0.30 ENSMUST00000029387.8
eukaryotic translation initiation factor 2A
chr10_+_38965515 0.30 ENSMUST00000019992.5
laminin, alpha 4
chr10_-_127666598 0.30 ENSMUST00000099157.3
Ngfi-A binding protein 2
chr19_+_4003334 0.29 ENSMUST00000025806.3
double C2, gamma
chr11_-_98022594 0.28 ENSMUST00000103144.3
ENSMUST00000017552.6
ENSMUST00000092736.4
ENSMUST00000107562.1
calcium channel, voltage-dependent, beta 1 subunit
chr7_+_101321703 0.28 ENSMUST00000174291.1
ENSMUST00000167888.2
ENSMUST00000172662.1
ENSMUST00000173270.1
ENSMUST00000174083.1
START domain containing 10
chr3_+_58526303 0.28 ENSMUST00000138848.1
eukaryotic translation initiation factor 2A
chr1_-_135688094 0.27 ENSMUST00000112103.1
neuron navigator 1
chr3_-_7613427 0.26 ENSMUST00000168269.2
interleukin 7
chr2_+_84840612 0.26 ENSMUST00000111625.1
solute carrier family 43, member 1
chr2_+_147012996 0.26 ENSMUST00000028921.5
5'-3' exoribonuclease 2
chr12_+_38780284 0.25 ENSMUST00000162563.1
ENSMUST00000161164.1
ENSMUST00000160996.1
ets variant gene 1
chr1_+_127306706 0.25 ENSMUST00000171405.1
mannoside acetylglucosaminyltransferase 5
chr7_-_45466894 0.25 ENSMUST00000033093.8
BCL2-associated X protein
chr18_-_56562215 0.22 ENSMUST00000170309.1
aldehyde dehydrogenase family 7, member A1
chr18_+_56562443 0.22 ENSMUST00000130163.1
ENSMUST00000132628.1
phosphorylated adaptor for RNA export
chr18_+_42511496 0.22 ENSMUST00000025375.7
transcription elongation regulator 1 (CA150)
chr8_-_83458386 0.20 ENSMUST00000081506.3
short coiled-coil protein
chr2_+_124610278 0.17 ENSMUST00000051419.8
ENSMUST00000077847.5
ENSMUST00000078621.5
ENSMUST00000076335.5
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
chr10_+_4266323 0.17 ENSMUST00000045730.5
A kinase (PRKA) anchor protein (gravin) 12
chr1_+_153665274 0.17 ENSMUST00000152114.1
ENSMUST00000111812.1
regulator of G-protein signaling 8
chr4_+_109235632 0.16 ENSMUST00000030285.7
calreticulin 4
chr18_-_56562261 0.16 ENSMUST00000066208.6
ENSMUST00000172734.1
aldehyde dehydrogenase family 7, member A1
chr14_+_70555900 0.16 ENSMUST00000163060.1
hairless
chr8_-_87959560 0.14 ENSMUST00000109655.2
zinc finger protein 423
chr8_-_117082449 0.13 ENSMUST00000098375.4
ENSMUST00000109093.2
polycystic kidney disease 1 like 2
chr11_+_96351632 0.13 ENSMUST00000100523.5
homeobox B2
chr10_+_67185730 0.12 ENSMUST00000173689.1
jumonji domain containing 1C
chr7_-_97417730 0.11 ENSMUST00000043077.7
thyroid hormone responsive
chr15_+_74516196 0.09 ENSMUST00000042035.9
brain-specific angiogenesis inhibitor 1
chr1_-_45503282 0.08 ENSMUST00000086430.4
collagen, type V, alpha 2
chr4_-_103114555 0.08 ENSMUST00000106868.3
WD repeat domain 78
chr9_-_91365778 0.08 ENSMUST00000065360.3
zinc finger protein of the cerebellum 1
chr5_+_139543889 0.07 ENSMUST00000174792.1
ENSMUST00000031523.8
UNC homeobox
chr1_+_178798438 0.07 ENSMUST00000160789.1
kinesin family member 26B
chr15_+_89253035 0.07 ENSMUST00000088788.3
protein phosphatase 6, regulatory subunit 2
chr2_+_65845833 0.07 ENSMUST00000053910.3
cysteine-serine-rich nuclear protein 3
chr11_-_69549108 0.06 ENSMUST00000108659.1
dynein, axonemal, heavy chain 2
chr9_-_91365756 0.06 ENSMUST00000034927.6
zinc finger protein of the cerebellum 1
chr17_+_26941420 0.06 ENSMUST00000081285.3
ENSMUST00000177932.1
synaptic Ras GTPase activating protein 1 homolog (rat)
chr4_-_145315143 0.06 ENSMUST00000030339.6
tumor necrosis factor receptor superfamily, member 8
chr4_+_109235413 0.06 ENSMUST00000106628.1
calreticulin 4
chr6_-_87533219 0.05 ENSMUST00000113637.2
ENSMUST00000071024.6
Rho GTPase activating protein 25
chr2_-_148045891 0.05 ENSMUST00000109964.1
forkhead box A2
chr16_+_25801907 0.04 ENSMUST00000040231.6
ENSMUST00000115306.1
ENSMUST00000115304.1
ENSMUST00000115305.1
transformation related protein 63
chr8_+_84901928 0.03 ENSMUST00000067060.7
Kruppel-like factor 1 (erythroid)
chr12_-_27160311 0.03 ENSMUST00000182473.1
ENSMUST00000177636.1
ENSMUST00000183238.1
predicted gene 9866
chr15_-_95528702 0.03 ENSMUST00000166170.1
NEL-like 2
chr7_+_123982799 0.03 ENSMUST00000106437.1
heparan sulfate (glucosamine) 3-O-sulfotransferase 4
chr7_+_102774495 0.03 ENSMUST00000098217.2
olfactory receptor 561
chr15_-_73819410 0.02 ENSMUST00000110021.2
maestro heat-like repeat family member 5
chr4_-_103114238 0.01 ENSMUST00000036451.8
ENSMUST00000036557.8
WD repeat domain 78
chr12_-_27160498 0.01 ENSMUST00000182592.1
predicted gene 9866
chr3_-_65958236 0.00 ENSMUST00000029416.7
cyclin L1
chr6_+_142413441 0.00 ENSMUST00000088263.4
RIKEN cDNA B230216G23 gene

Network of associatons between targets according to the STRING database.

First level regulatory network of Hoxb1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.1 GO:0060032 notochord regression(GO:0060032)
0.2 0.5 GO:1990927 calcium ion regulated lysosome exocytosis(GO:1990927)
0.1 0.8 GO:0033563 dorsal/ventral axon guidance(GO:0033563)
0.1 0.6 GO:1990928 response to amino acid starvation(GO:1990928)
0.1 0.6 GO:0016480 negative regulation of transcription from RNA polymerase III promoter(GO:0016480)
0.1 0.3 GO:0048687 positive regulation of sprouting of injured axon(GO:0048687) positive regulation of axon extension involved in regeneration(GO:0048691)
0.1 0.2 GO:1902445 B cell negative selection(GO:0002352) regulation of mitochondrial membrane permeability involved in programmed necrotic cell death(GO:1902445)
0.1 1.1 GO:2001054 negative regulation of mesenchymal cell apoptotic process(GO:2001054)
0.1 0.2 GO:0051030 snRNA transport(GO:0051030)
0.1 0.4 GO:0051581 negative regulation of neurotransmitter uptake(GO:0051581) negative regulation of serotonin uptake(GO:0051612)
0.1 0.8 GO:1900121 negative regulation of receptor binding(GO:1900121)
0.1 0.3 GO:0000738 DNA catabolic process, exonucleolytic(GO:0000738)
0.0 0.3 GO:0035360 positive regulation of peroxisome proliferator activated receptor signaling pathway(GO:0035360)
0.0 0.1 GO:0021570 rhombomere 4 development(GO:0021570)
0.0 0.4 GO:0071688 striated muscle myosin thick filament assembly(GO:0071688)
0.0 0.0 GO:1904672 regulation of somatic stem cell population maintenance(GO:1904672)
0.0 0.1 GO:1903225 negative regulation of endodermal cell differentiation(GO:1903225)
0.0 0.3 GO:0048934 peripheral nervous system neuron differentiation(GO:0048934) peripheral nervous system neuron development(GO:0048935)
0.0 0.2 GO:0061635 regulation of protein complex stability(GO:0061635)
0.0 0.2 GO:0010739 positive regulation of protein kinase A signaling(GO:0010739)
0.0 0.0 GO:0045013 carbon catabolite repression of transcription(GO:0045013) negative regulation of transcription by glucose(GO:0045014)
0.0 0.5 GO:0014912 negative regulation of smooth muscle cell migration(GO:0014912)
0.0 0.4 GO:0050650 chondroitin sulfate proteoglycan biosynthetic process(GO:0050650)
0.0 0.2 GO:0060159 G-protein coupled acetylcholine receptor signaling pathway(GO:0007213) regulation of dopamine receptor signaling pathway(GO:0060159)
0.0 0.1 GO:0072092 ureteric bud invasion(GO:0072092)
0.0 0.3 GO:0033169 histone H3-K9 demethylation(GO:0033169)
0.0 1.1 GO:0001578 microtubule bundle formation(GO:0001578)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.1 GO:0097542 ciliary tip(GO:0097542)
0.1 0.8 GO:0097427 microtubule bundle(GO:0097427)
0.1 0.6 GO:0005850 eukaryotic translation initiation factor 2 complex(GO:0005850)
0.0 0.5 GO:0048787 presynaptic active zone membrane(GO:0048787)
0.0 0.1 GO:0005588 collagen type V trimer(GO:0005588)
0.0 0.2 GO:0097136 Bcl-2 family protein complex(GO:0097136)
0.0 0.3 GO:0046581 intercellular canaliculus(GO:0046581)
0.0 0.4 GO:0005859 muscle myosin complex(GO:0005859)
0.0 0.3 GO:0005605 basal lamina(GO:0005605)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0008802 betaine-aldehyde dehydrogenase activity(GO:0008802)
0.1 0.8 GO:0048495 Roundabout binding(GO:0048495)
0.1 0.3 GO:0004534 transcription termination site sequence-specific DNA binding(GO:0001147) transcription termination site DNA binding(GO:0001160) 5'-3' exoribonuclease activity(GO:0004534)
0.1 1.1 GO:0003680 AT DNA binding(GO:0003680)
0.1 0.8 GO:1990459 transferrin receptor binding(GO:1990459)
0.1 0.3 GO:0005030 neurotrophin receptor activity(GO:0005030)
0.0 0.2 GO:0030144 alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity(GO:0030144)
0.0 0.5 GO:0030215 semaphorin receptor binding(GO:0030215)
0.0 1.1 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 0.3 GO:0015093 ferrous iron transmembrane transporter activity(GO:0015093)
0.0 0.2 GO:0051434 BH3 domain binding(GO:0051434)
0.0 0.4 GO:0097493 structural molecule activity conferring elasticity(GO:0097493)
0.0 0.4 GO:0015095 magnesium ion transmembrane transporter activity(GO:0015095)
0.0 0.3 GO:0008331 high voltage-gated calcium channel activity(GO:0008331)
0.0 0.6 GO:0005201 extracellular matrix structural constituent(GO:0005201)
0.0 0.2 GO:0015643 toxic substance binding(GO:0015643)
0.0 0.3 GO:0032454 histone demethylase activity (H3-K9 specific)(GO:0032454)
0.0 0.6 GO:0003743 translation initiation factor activity(GO:0003743)
0.0 0.5 GO:0031369 translation initiation factor binding(GO:0031369)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.1 PID HEDGEHOG 2PATHWAY Signaling events mediated by the Hedgehog family
0.0 0.8 PID BMP PATHWAY BMP receptor signaling
0.0 0.2 SA PROGRAMMED CELL DEATH Programmed cell death, or apoptosis, eliminates damaged or unneeded cells.
0.0 0.6 PID FRA PATHWAY Validated transcriptional targets of AP1 family members Fra1 and Fra2
0.0 0.6 PID TCPTP PATHWAY Signaling events mediated by TCPTP
0.0 0.8 PID AJDISS 2PATHWAY Posttranslational regulation of adherens junction stability and dissassembly

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.6 REACTOME NETRIN1 SIGNALING Genes involved in Netrin-1 signaling
0.0 0.5 REACTOME OTHER SEMAPHORIN INTERACTIONS Genes involved in Other semaphorin interactions
0.0 0.3 REACTOME IL 7 SIGNALING Genes involved in Interleukin-7 signaling
0.0 0.2 REACTOME N GLYCAN ANTENNAE ELONGATION Genes involved in N-Glycan antennae elongation