mm10_v2_chr5_+_36868467_36868560	3.99169	AAUACUG	ENSMUST00000031003.7|Ppp2r2c|ENSMUSG00000029120.7|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform
mm10_v2_chr9_-_22389113_22389206	3.19234	AAUACUG	ENSMUST00000040912.7|Anln|ENSMUSG00000036777.7|anillin, actin binding protein
mm10_v2_chr13_+_108316332_108316358	3.19008	AAUACUG	ENSMUST00000051594.5|Depdc1b|ENSMUSG00000021697.6|DEP domain containing 1B
mm10_v2_chr18_+_22345089_22345089	3.14437	AAUACUG	ENSMUST00000120223.1|Asxl3|ENSMUSG00000045215.10|additional sex combs like 3 (Drosophila) 	ENSMUST00000097655.3|Asxl3|ENSMUSG00000045215.10|additional sex combs like 3 (Drosophila)
mm10_v2_chr11_-_87108656_87108719	2.89378	AAUACUG	ENSMUST00000051395.8|Prr11|ENSMUSG00000020493.8|proline rich 11
mm10_v2_chr2_+_31245801_31245900	2.88533	AAUACUG	ENSMUST00000000199.7|Ncs1|ENSMUSG00000062661.6|neuronal calcium sensor 1
mm10_v2_chr8_-_31918203_31918368	2.7532	AAUACUG	ENSMUST00000073884.4|Nrg1|ENSMUSG00000062991.6|neuregulin 1
mm10_v2_chr1_+_55406163_55406388	2.5997	AAUACUG	ENSMUST00000042986.8|Plcl1|ENSMUSG00000038349.9|phospholipase C-like 1
mm10_v2_chr12_-_108003594_108003613	2.38408	AAUACUG	ENSMUST00000066060.4|Bcl11b|ENSMUSG00000048251.9|B cell leukemia/lymphoma 11B
mm10_v2_chr6_+_120666388_120666424	2.13787	AAUACUG	ENSMUST00000112686.1|Cecr2|ENSMUSG00000071226.5|cat eye syndrome chromosome region, candidate 2
mm10_v2_chr4_+_17853451_17853474	2.12862	AAUACUG	ENSMUST00000029881.3|Mmp16|ENSMUSG00000028226.9|matrix metallopeptidase 16
mm10_v2_chr5_-_142608785_142608808	2.06863	AAUACUG	ENSMUST00000037048.7|Mmd2|ENSMUSG00000039533.7|monocyte to macrophage differentiation-associated 2
mm10_v2_chr1_+_158362261_158362304	2.01874	AAUACUG	ENSMUST00000046110.9|Astn1|ENSMUSG00000026587.9|astrotactin 1
mm10_v2_chr11_-_90390895_90390926	1.99314	AAUACUG	ENSMUST00000004051.7|Hlf|ENSMUSG00000003949.10|hepatic leukemia factor
mm10_v2_chr4_-_91372028_91372069	1.84123	AAUACUG	ENSMUST00000107110.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000008633.8|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107118.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr1_+_34801704_34801776	1.79403	AAUACUG	ENSMUST00000047664.9|Arhgef4|ENSMUSG00000037509.12|Rho guanine nucleotide exchange factor (GEF) 4
mm10_v2_chr18_+_5591860_5591902	1.77994	AAUACUG	ENSMUST00000025081.5|Zeb1|ENSMUSG00000024238.7|zinc finger E-box binding homeobox 1 	ENSMUST00000159390.1|Zeb1|ENSMUSG00000024238.7|zinc finger E-box binding homeobox 1
mm10_v2_chr12_-_112929415_112929495	1.74713	AAUACUG	ENSMUST00000075827.3|Jag2|ENSMUSG00000002799.5|jagged 2
mm10_v2_chr6_+_71707561_71707561	1.73974	AAUACUG	ENSMUST00000121469.1|Reep1|ENSMUSG00000052852.7|receptor accessory protein 1
mm10_v2_chr11_-_118909487_118909575	1.69431	AAUACUG	ENSMUST00000117731.1|Rbfox3|ENSMUSG00000025576.11|RNA binding protein, fox-1 homolog (C. elegans) 3 	ENSMUST00000106278.2|Rbfox3|ENSMUSG00000025576.11|RNA binding protein, fox-1 homolog (C. elegans) 3 	ENSMUST00000120061.1|Rbfox3|ENSMUSG00000025576.11|RNA binding protein, fox-1 homolog (C. elegans) 3 	ENSMUST00000017576.4|Rbfox3|ENSMUSG00000025576.11|RNA binding protein, fox-1 homolog (C. elegans) 3
mm10_v2_chr2_-_51149100_51149115	1.68296	AAUACUG	ENSMUST00000154545.1|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3 	ENSMUST00000017288.2|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3
mm10_v2_chr10_+_41810528_41810580	1.66952	AAUACUG	ENSMUST00000099931.3|Sesn1|ENSMUSG00000038332.6|sestrin 1
mm10_v2_chr8_+_123411424_123411562	1.65691	AAUACUG	ENSMUST00000071134.3|Tubb3|ENSMUSG00000062380.3|tubulin, beta 3 class III
mm10_v2_chr4_-_132732514_132732558	1.65565	AAUACUG	ENSMUST00000045550.4|Xkr8|ENSMUSG00000037752.4|X Kell blood group precursor related family member 8 homolog
mm10_v2_chr10_+_110920170_110920188	1.64647	AAUACUG	ENSMUST00000020403.5|Csrp2|ENSMUSG00000020186.6|cysteine and glycine-rich protein 2
mm10_v2_chr2_-_42653598_42653598	1.60807	AAUACUG	ENSMUST00000052550.6|Lrp1b|ENSMUSG00000049252.11|low density lipoprotein-related protein 1B (deleted in tumors)
mm10_v2_chr15_-_64312636_64312692	1.59038	AAUACUG	ENSMUST00000177083.1|Asap1|ENSMUSG00000022377.10|ArfGAP with SH3 domain, ankyrin repeat and PH domain1 	ENSMUST00000177371.1|Asap1|ENSMUSG00000022377.10|ArfGAP with SH3 domain, ankyrin repeat and PH domain1
mm10_v2_chr11_-_119547744_119547759	1.57348	AAUACUG	ENSMUST00000026670.4|Nptx1|ENSMUSG00000025582.4|neuronal pentraxin 1
mm10_v2_chr16_+_16896469_16896598	1.53835	AAUACUG	ENSMUST00000027373.9|Ppm1f|ENSMUSG00000026181.11|protein phosphatase 1F (PP2C domain containing)
mm10_v2_chr1_-_153332724_153332804	1.53828	AAUACUG	ENSMUST00000027752.8|Lamc1|ENSMUSG00000026478.8|laminin, gamma 1
mm10_v2_chr1_-_9700209_9700329	1.52474	AAUACUG	ENSMUST00000088658.4|Mybl1|ENSMUSG00000025912.10|myeloblastosis oncogene-like 1
mm10_v2_chr12_-_73047179_73047179	1.50203	AAUACUG	ENSMUST00000050029.7|Six1|ENSMUSG00000051367.8|sine oculis-related homeobox 1
mm10_v2_chr17_-_35838259_35838306	1.48823	AAUACUG	ENSMUST00000001566.8|Tubb5|ENSMUSG00000001525.9|tubulin, beta 5 class I
mm10_v2_chr7_+_18925863_18925899	1.48257	AAUACUG	ENSMUST00000172835.1|Nova2|ENSMUSG00000030411.9|neuro-oncological ventral antigen 2 	ENSMUST00000032571.8|Nova2|ENSMUSG00000030411.9|neuro-oncological ventral antigen 2
mm10_v2_chr13_-_55329723_55329776	1.46066	AAUACUG	ENSMUST00000021941.7|Mxd3|ENSMUSG00000021485.7|Max dimerization protein 3
mm10_v2_chr16_+_21891969_21891969	1.43816	AAUACUG	ENSMUST00000042065.6|Map3k13|ENSMUSG00000033618.6|mitogen-activated protein kinase kinase kinase 13
mm10_v2_chr5_-_20882072_20882124	1.42581	AAUACUG	ENSMUST00000118174.1|Phtf2|ENSMUSG00000039987.9|putative homeodomain transcription factor 2
mm10_v2_chr6_+_8948608_8948619	1.35495	AAUACUG	ENSMUST00000160300.1|Nxph1|ENSMUSG00000046178.3|neurexophilin 1
mm10_v2_chr9_-_16378231_16378231	1.34361	AAUACUG	ENSMUST00000082170.5|Fat3|ENSMUSG00000074505.4|FAT tumor suppressor homolog 3 (Drosophila)
mm10_v2_chr10_+_103367748_103367836	1.3348	AAUACUG	ENSMUST00000074204.4|Slc6a15|ENSMUSG00000019894.7|solute carrier family 6 (neurotransmitter transporter), member 15 	ENSMUST00000179636.1|Slc6a15|ENSMUSG00000019894.7|solute carrier family 6 (neurotransmitter transporter), member 15
mm10_v2_chr12_-_98737405_98737515	1.33008	AAUACUG	ENSMUST00000170188.1|Ptpn21|ENSMUSG00000021009.8|protein tyrosine phosphatase, non-receptor type 21
mm10_v2_chr12_+_78861693_78861819	1.32583	AAUACUG	ENSMUST00000071230.7|Eif2s1|ENSMUSG00000021116.9|eukaryotic translation initiation factor 2, subunit 1 alpha
mm10_v2_chr2_+_181763315_181763335	1.31019	AAUACUG	ENSMUST00000081125.4|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr2_+_102658640_102658669	1.28757	AAUACUG	ENSMUST00000080210.3|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr1_+_187997821_187997834	1.28536	AAUACUG	ENSMUST00000027906.6|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chrX_+_71555918_71556022	1.27118	AAUACUG	ENSMUST00000072699.6|Hmgb3|ENSMUSG00000015217.5|high mobility group box 3 	ENSMUST00000114582.2|Hmgb3|ENSMUSG00000015217.5|high mobility group box 3 	ENSMUST00000015361.4|Hmgb3|ENSMUSG00000015217.5|high mobility group box 3 	ENSMUST00000088874.3|Hmgb3|ENSMUSG00000015217.5|high mobility group box 3
mm10_v2_chr5_+_146384947_146384994	1.14625	AAUACUG	ENSMUST00000110600.1|Wasf3|ENSMUSG00000029636.7|WAS protein family, member 3 	ENSMUST00000016143.7|Wasf3|ENSMUSG00000029636.7|WAS protein family, member 3
mm10_v2_chr2_-_73529725_73529736	1.12235	AAUACUG	ENSMUST00000094681.4|Wipf1|ENSMUSG00000075284.4|WAS/WASL interacting protein family, member 1
mm10_v2_chr18_+_10325148_10325222	1.11812	AAUACUG	ENSMUST00000048977.8|Greb1l|ENSMUSG00000042942.9|growth regulation by estrogen in breast cancer-like
mm10_v2_chr3_-_53657339_53657391	1.08982	AAUACUG	ENSMUST00000091137.4|Frem2|ENSMUSG00000037016.7|Fras1 related extracellular matrix protein 2
mm10_v2_chr16_+_14705832_14705858	1.07455	AAUACUG	ENSMUST00000023356.6|Snai2|ENSMUSG00000022676.6|snail homolog 2 (Drosophila)
mm10_v2_chr15_-_73184840_73184971	1.04987	AAUACUG	ENSMUST00000044113.10|Ago2|ENSMUSG00000036698.10|argonaute RISC catalytic subunit 2
mm10_v2_chr9_+_72532214_72532271	1.04754	AAUACUG	ENSMUST00000163401.2|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7 	ENSMUST00000093820.3|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7
mm10_v2_chr3_-_152982240_152982251	1.04188	AAUACUG	ENSMUST00000044278.5|St6galnac5|ENSMUSG00000039037.5|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
mm10_v2_chr17_+_42315947_42315947	1.03602	AAUACUG	ENSMUST00000048691.4|Ptchd4|ENSMUSG00000042256.4|patched domain containing 4
mm10_v2_chr12_+_40446050_40446099	1.02812	AAUACUG	ENSMUST00000037488.6|Dock4|ENSMUSG00000035954.9|dedicator of cytokinesis 4
mm10_v2_chr12_-_5375682_5375705	1.02725	AAUACUG	ENSMUST00000020958.8|Klhl29|ENSMUSG00000020627.9|kelch-like 29
mm10_v2_chr2_-_45113255_45113279	1.00516	AAUACUG	ENSMUST00000068415.4|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2 	ENSMUST00000127520.1|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr17_-_31658729_31658766	0.982256	AAUACUG	ENSMUST00000166526.1|U2af1|ENSMUSG00000061613.6|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 	ENSMUST00000014684.4|U2af1|ENSMUSG00000061613.6|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
mm10_v2_chrX_-_75875101_75875182	0.944845	AAUACUG	ENSMUST00000114059.3|Pls3|ENSMUSG00000016382.9|plastin 3 (T-isoform)
mm10_v2_chr3_+_68468162_68468209	0.943741	AAUACUG	ENSMUST00000182532.1|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr1_-_38129618_38129679	0.899123	AAUACUG	ENSMUST00000027251.6|Rev1|ENSMUSG00000026082.6|REV1 homolog (S. cerevisiae)
mm10_v2_chr1_+_171370345_171370359	0.890301	AAUACUG	ENSMUST00000006578.3|Pvrl4|ENSMUSG00000006411.6|poliovirus receptor-related 4 	ENSMUST00000094325.4|Pvrl4|ENSMUSG00000006411.6|poliovirus receptor-related 4
mm10_v2_chr14_+_70077375_70077445	0.89002	AAUACUG	ENSMUST00000035908.1|Egr3|ENSMUSG00000033730.3|early growth response 3
mm10_v2_chr2_+_3713449_3713474	0.866125	AAUACUG	ENSMUST00000027965.4|Fam107b|ENSMUSG00000026655.8|family with sequence similarity 107, member B
mm10_v2_chr16_-_58523349_58523426	0.84432	AAUACUG	ENSMUST00000137035.1|St3gal6|ENSMUSG00000022747.10|ST3 beta-galactoside alpha-2,3-sialyltransferase 6
mm10_v2_chr9_+_72806874_72806874	0.842639	AAUACUG	ENSMUST00000055535.8|Prtg|ENSMUSG00000036030.9|protogenin homolog (Gallus gallus)
mm10_v2_chr11_+_77216180_77216287	0.83704	AAUACUG	ENSMUST00000037912.5|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila) 	ENSMUST00000156488.1|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila)
mm10_v2_chr7_+_102702331_102702331	0.830866	AAUACUG	ENSMUST00000094124.3|Olfr558|ENSMUSG00000070423.3|olfactory receptor 558
mm10_v2_chr2_+_124610573_124610613	0.825194	AAUACUG	ENSMUST00000103239.3|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D 	ENSMUST00000103240.2|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm10_v2_chr13_-_47106176_47106206	0.824662	AAUACUG	ENSMUST00000021807.6|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding) 	ENSMUST00000135278.1|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding)
mm10_v2_chr12_-_30911593_30911615	0.822718	AAUACUG	ENSMUST00000062740.7|Acp1|ENSMUSG00000044573.8|acid phosphatase 1, soluble 	ENSMUST00000074038.5|Acp1|ENSMUSG00000044573.8|acid phosphatase 1, soluble
mm10_v2_chr2_+_65620829_65620857	0.813902	AAUACUG	ENSMUST00000028377.7|Scn2a1|ENSMUSG00000075318.6|sodium channel, voltage-gated, type II, alpha 1
mm10_v2_chr3_+_7366598_7366641	0.812106	AAUACUG	ENSMUST00000028999.6|Pkia|ENSMUSG00000027499.7|protein kinase inhibitor, alpha
mm10_v2_chr11_-_97744659_97744774	0.810463	AAUACUG	ENSMUST00000018691.8|Pip4k2b|ENSMUSG00000018547.8|phosphatidylinositol-5-phosphate 4-kinase, type II, beta
mm10_v2_chr13_-_40733768_40733836	0.806822	AAUACUG	ENSMUST00000110193.2|Tfap2a|ENSMUSG00000021359.9|transcription factor AP-2, alpha
mm10_v2_chr9_+_51765325_51765364	0.80143	AAUACUG	ENSMUST00000065496.5|Arhgap20|ENSMUSG00000053199.7|Rho GTPase activating protein 20
mm10_v2_chr14_+_101729907_101729958	0.795298	AAUACUG	ENSMUST00000100337.3|Lmo7|ENSMUSG00000033060.9|LIM domain only 7
mm10_v2_chr10_-_92722356_92722420	0.794577	AAUACUG	ENSMUST00000020163.6|Nedd1|ENSMUSG00000019988.6|neural precursor cell expressed, developmentally down-regulated gene 1
mm10_v2_chr18_+_69345721_69345811	0.793197	AAUACUG	ENSMUST00000078486.6|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114982.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr1_-_178337774_178337797	0.792978	AAUACUG	ENSMUST00000037748.7|Hnrnpu|ENSMUSG00000039630.8|heterogeneous nuclear ribonucleoprotein U
mm10_v2_chr13_+_16014457_16014475	0.792808	AAUACUG	ENSMUST00000164993.1|Inhba|ENSMUSG00000041324.7|inhibin beta-A
mm10_v2_chr19_+_60755947_60755987	0.774142	AAUACUG	ENSMUST00000088237.4|Nanos1|ENSMUSG00000072437.3|nanos homolog 1 (Drosophila)
mm10_v2_chr1_+_15712303_15712303	0.767261	AAUACUG	ENSMUST00000170146.1|Kcnb2|ENSMUSG00000090498.1|potassium voltage gated channel, Shab-related subfamily, member 2
mm10_v2_chr5_-_114773488_114773517	0.761727	AAUACUG	ENSMUST00000178440.1|Git2|ENSMUSG00000041890.11|G protein-coupled receptor kinase-interactor 2 	ENSMUST00000043283.7|Git2|ENSMUSG00000041890.11|G protein-coupled receptor kinase-interactor 2 	ENSMUST00000112185.2|Git2|ENSMUSG00000041890.11|G protein-coupled receptor kinase-interactor 2
mm10_v2_chrX_-_152368680_152368740	0.758712	AAUACUG	ENSMUST00000070316.5|Gpr173|ENSMUSG00000056679.7|G-protein coupled receptor 173
mm10_v2_chr3_+_101377074_101377158	0.750481	AAUACUG	ENSMUST00000043983.5|Igsf3|ENSMUSG00000042035.6|immunoglobulin superfamily, member 3
mm10_v2_chr10_+_80755196_80755239	0.741493	AAUACUG	ENSMUST00000105336.2|Dot1l|ENSMUSG00000061589.8|DOT1-like, histone H3 methyltransferase (S. cerevisiae)
mm10_v2_chr13_+_54071815_54071859	0.736692	AAUACUG	ENSMUST00000021930.8|Sfxn1|ENSMUSG00000021474.8|sideroflexin 1
mm10_v2_chr19_-_41802028_41802084	0.725991	AAUACUG	ENSMUST00000026150.8|Arhgap19|ENSMUSG00000025154.8|Rho GTPase activating protein 19 	ENSMUST00000177495.1|Arhgap19|ENSMUSG00000025154.8|Rho GTPase activating protein 19 	ENSMUST00000163265.1|Arhgap19|ENSMUSG00000025154.8|Rho GTPase activating protein 19
mm10_v2_chr13_-_58113592_58113620	0.714336	AAUACUG	ENSMUST00000160860.1|Klhl3|ENSMUSG00000014164.8|kelch-like 3
mm10_v2_chr11_-_106612928_106612973	0.713678	AAUACUG	ENSMUST00000042780.7|Tex2|ENSMUSG00000040548.9|testis expressed gene 2
mm10_v2_chr10_+_40883819_40883862	0.711878	AAUACUG	ENSMUST00000105509.1|Wasf1|ENSMUSG00000019831.8|WAS protein family, member 1
mm10_v2_chr5_-_135934590_135934613	0.71167	AAUACUG	ENSMUST00000055808.5|Ywhag|ENSMUSG00000051391.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm10_v2_chr2_+_153741274_153741294	0.692833	AAUACUG	ENSMUST00000028981.8|Mapre1|ENSMUSG00000027479.8|microtubule-associated protein, RP/EB family, member 1
mm10_v2_chr14_-_98169542_98169595	0.68911	AAUACUG	ENSMUST00000069334.7|Dach1|ENSMUSG00000055639.10|dachshund 1 (Drosophila) 	ENSMUST00000071533.6|Dach1|ENSMUSG00000055639.10|dachshund 1 (Drosophila)
mm10_v2_chr8_-_116732991_116733076	0.685025	AAUACUG	ENSMUST00000109102.2|Cdyl2|ENSMUSG00000031758.9|chromodomain protein, Y chromosome-like 2
mm10_v2_chr9_-_114564315_114564369	0.684741	AAUACUG	ENSMUST00000111816.2|Trim71|ENSMUSG00000079259.2|tripartite motif-containing 71
mm10_v2_chr4_-_129189512_129189594	0.67809	AAUACUG	ENSMUST00000117965.1|S100pbp|ENSMUSG00000040928.9|S100P binding protein 	ENSMUST00000106061.2|S100pbp|ENSMUSG00000040928.9|S100P binding protein 	ENSMUST00000072431.6|S100pbp|ENSMUSG00000040928.9|S100P binding protein
mm10_v2_chr2_+_119897212_119897305	0.672744	AAUACUG	ENSMUST00000046717.6|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000110774.1|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000110773.2|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000079934.5|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000156510.1|Mga|ENSMUSG00000033943.9|MAX gene associated
mm10_v2_chr1_-_106714217_106714330	0.67179	AAUACUG	ENSMUST00000112751.1|Bcl2|ENSMUSG00000057329.6|B cell leukemia/lymphoma 2
mm10_v2_chr14_-_79771305_79771318	0.66862	AAUACUG	ENSMUST00000039568.5|Pcdh8|ENSMUSG00000036422.5|protocadherin 8
mm10_v2_chr4_+_57637816_57637846	0.668411	AAUACUG	ENSMUST00000150412.1|Gm20459|ENSMUSG00000089945.4|predicted gene 20459
mm10_v2_chr4_-_41569502_41569551	0.66585	AAUACUG	ENSMUST00000108049.2|Fam219a|ENSMUSG00000028439.8|family with sequence similarity 219, member A 	ENSMUST00000108052.3|Fam219a|ENSMUSG00000028439.8|family with sequence similarity 219, member A 	ENSMUST00000108050.1|Fam219a|ENSMUSG00000028439.8|family with sequence similarity 219, member A
mm10_v2_chr1_-_152766281_152766319	0.660642	AAUACUG	ENSMUST00000111859.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1 	ENSMUST00000148865.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr14_-_31830402_31830440	0.654487	AAUACUG	ENSMUST00000014640.7|Ankrd28|ENSMUSG00000014496.7|ankyrin repeat domain 28
mm10_v2_chr2_+_90745370_90745469	0.642964	AAUACUG	ENSMUST00000013759.5|Fnbp4|ENSMUSG00000008200.8|formin binding protein 4
mm10_v2_chr13_+_35659856_35659870	0.641315	AAUACUG	ENSMUST00000075220.6|Cdyl|ENSMUSG00000059288.7|chromodomain protein, Y chromosome-like
mm10_v2_chr1_+_37997975_37998010	0.633116	AAUACUG	ENSMUST00000027252.7|Eif5b|ENSMUSG00000026083.7|eukaryotic translation initiation factor 5B
mm10_v2_chr2_-_65567465_65567495	0.629045	AAUACUG	ENSMUST00000066432.5|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr13_+_41249841_41249863	0.62398	AAUACUG	ENSMUST00000165561.2|Smim13|ENSMUSG00000091264.2|small integral membrane protein 13
mm10_v2_chr8_-_35495487_35495545	0.623333	AAUACUG	ENSMUST00000033927.6|Eri1|ENSMUSG00000031527.6|exoribonuclease 1
mm10_v2_chr3_+_22076644_22076681	0.621323	AAUACUG	ENSMUST00000063988.8|Tbl1xr1|ENSMUSG00000027630.8|transducin (beta)-like 1X-linked receptor 1
mm10_v2_chr10_-_71285234_71285262	0.612289	AAUACUG	ENSMUST00000020085.6|Ube2d1|ENSMUSG00000019927.6|ubiquitin-conjugating enzyme E2D 1
mm10_v2_chr11_-_76846968_76847045	0.596954	AAUACUG	ENSMUST00000021201.5|Cpd|ENSMUSG00000020841.5|carboxypeptidase D
mm10_v2_chr9_-_32541589_32541602	0.591356	AAUACUG	ENSMUST00000016231.7|Fli1|ENSMUSG00000016087.7|Friend leukemia integration 1
mm10_v2_chr3_+_88532314_88532396	0.580466	AAUACUG	ENSMUST00000172699.1|Mex3a|ENSMUSG00000074480.4|mex3 homolog A (C. elegans)
mm10_v2_chr16_-_76373827_76373852	0.579514	AAUACUG	ENSMUST00000121927.1|Nrip1|ENSMUSG00000048490.7|nuclear receptor interacting protein 1
mm10_v2_chr6_-_143947092_143947111	0.579506	AAUACUG	ENSMUST00000144289.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5 	ENSMUST00000111748.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr5_+_123076275_123076354	0.57923	AAUACUG	ENSMUST00000067505.8|Tmem120b|ENSMUSG00000054434.8|transmembrane protein 120B 	ENSMUST00000111619.3|Tmem120b|ENSMUSG00000054434.8|transmembrane protein 120B 	ENSMUST00000160344.1|Tmem120b|ENSMUSG00000054434.8|transmembrane protein 120B
mm10_v2_chr3_-_144570136_144570227	0.576709	AAUACUG	ENSMUST00000043325.7|Hs2st1|ENSMUSG00000040151.8|heparan sulfate 2-O-sulfotransferase 1
mm10_v2_chr6_-_90810118_90810160	0.575836	AAUACUG	ENSMUST00000101151.3|Iqsec1|ENSMUSG00000034312.7|IQ motif and Sec7 domain 1
mm10_v2_chr5_-_99978914_99978966	0.568131	AAUACUG	ENSMUST00000112939.3|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000171786.1|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000072750.6|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000019128.8|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000172361.1|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D
mm10_v2_chr4_+_11156411_11156453	0.563807	AAUACUG	ENSMUST00000029865.3|Trp53inp1|ENSMUSG00000028211.5|transformation related protein 53 inducible nuclear protein 1
mm10_v2_chr7_+_82867327_82867357	0.550211	AAUACUG	ENSMUST00000082237.5|Mex3b|ENSMUSG00000057706.6|mex3 homolog B (C. elegans)
mm10_v2_chr17_+_15499888_15499960	0.549565	AAUACUG	ENSMUST00000159197.1|Tbp|ENSMUSG00000014767.10|TATA box binding protein 	ENSMUST00000162505.1|Tbp|ENSMUSG00000014767.10|TATA box binding protein 	ENSMUST00000014911.5|Tbp|ENSMUSG00000014767.10|TATA box binding protein 	ENSMUST00000147081.2|Tbp|ENSMUSG00000014767.10|TATA box binding protein 	ENSMUST00000118001.1|Tbp|ENSMUSG00000014767.10|TATA box binding protein 	ENSMUST00000143924.1|Tbp|ENSMUSG00000014767.10|TATA box binding protein 	ENSMUST00000119879.2|Tbp|ENSMUSG00000014767.10|TATA box binding protein 	ENSMUST00000155051.1|Tbp|ENSMUSG00000014767.10|TATA box binding protein 	ENSMUST00000117593.1|Tbp|ENSMUSG00000014767.10|TATA box binding protein
mm10_v2_chr4_-_34882919_34882964	0.544233	AAUACUG	ENSMUST00000098163.2|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292 	ENSMUST00000047950.5|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292
mm10_v2_chr11_-_102819114_102819214	0.543196	AAUACUG	ENSMUST00000068933.5|Gjc1|ENSMUSG00000034520.8|gap junction protein, gamma 1
mm10_v2_chrX_-_111463043_111463081	0.539847	AAUACUG	ENSMUST00000065976.5|Rps6ka6|ENSMUSG00000025665.10|ribosomal protein S6 kinase polypeptide 6
mm10_v2_chr9_+_40269430_40269441	0.536706	AAUACUG	ENSMUST00000171835.2|Scn3b|ENSMUSG00000049281.9|sodium channel, voltage-gated, type III, beta
mm10_v2_chr18_-_78123324_78123426	0.529772	AAUACUG	ENSMUST00000160292.1|Slc14a1|ENSMUSG00000059336.8|solute carrier family 14 (urea transporter), member 1 	ENSMUST00000091813.5|Slc14a1|ENSMUSG00000059336.8|solute carrier family 14 (urea transporter), member 1
mm10_v2_chr12_-_13249198_13249224	0.526193	AAUACUG	ENSMUST00000071103.8|Ddx1|ENSMUSG00000037149.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1
mm10_v2_chr3_+_53041517_53041583	0.52357	AAUACUG	ENSMUST00000059562.7|Lhfp|ENSMUSG00000048332.7|lipoma HMGIC fusion partner 	ENSMUST00000147139.1|Lhfp|ENSMUSG00000048332.7|lipoma HMGIC fusion partner
mm10_v2_chr5_-_113908685_113908758	0.52316	AAUACUG	ENSMUST00000004646.6|Coro1c|ENSMUSG00000004530.6|coronin, actin binding protein 1C
mm10_v2_chrX_+_159532674_159532748	0.505657	AAUACUG	ENSMUST00000057180.6|A830080D01Rik|ENSMUSG00000044150.6|RIKEN cDNA A830080D01 gene
mm10_v2_chr10_-_84533884_84533896	0.504639	AAUACUG	ENSMUST00000053871.3|Ckap4|ENSMUSG00000046841.4|cytoskeleton-associated protein 4
mm10_v2_chr15_-_89315253_89315312	0.501839	AAUACUG	ENSMUST00000144585.2|Sbf1|ENSMUSG00000036529.11|SET binding factor 1 	ENSMUST00000123791.1|Sbf1|ENSMUSG00000036529.11|SET binding factor 1
mm10_v2_chr9_+_47530173_47530373	0.501119	AAUACUG	ENSMUST00000114548.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000152459.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000143026.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000085909.2|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000114547.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000034581.3|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1
mm10_v2_chr11_-_49712674_49712726	0.500782	AAUACUG	ENSMUST00000020624.6|Cnot6|ENSMUSG00000020362.7|CCR4-NOT transcription complex, subunit 6 	ENSMUST00000145353.1|Cnot6|ENSMUSG00000020362.7|CCR4-NOT transcription complex, subunit 6
mm10_v2_chr12_-_54862783_54862921	0.494795	AAUACUG	ENSMUST00000078124.7|Cfl2|ENSMUSG00000062929.7|cofilin 2, muscle
mm10_v2_chr1_+_66175286_66175348	0.494305	AAUACUG	ENSMUST00000114017.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2 	ENSMUST00000114015.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr10_-_91082653_91082662	0.493589	AAUACUG	ENSMUST00000159110.1|Apaf1|ENSMUSG00000019979.6|apoptotic peptidase activating factor 1
mm10_v2_chrX_+_94367147_94367183	0.490767	AAUACUG	ENSMUST00000113897.2|Apoo|ENSMUSG00000079508.2|apolipoprotein O 	ENSMUST00000113896.1|Apoo|ENSMUSG00000079508.2|apolipoprotein O 	ENSMUST00000113895.1|Apoo|ENSMUSG00000079508.2|apolipoprotein O
mm10_v2_chr8_-_102785093_102785114	0.488497	AAUACUG	ENSMUST00000075190.3|Cdh11|ENSMUSG00000031673.5|cadherin 11
mm10_v2_chr2_-_136387929_136387985	0.482533	AAUACUG	ENSMUST00000035264.2|Pak7|ENSMUSG00000039913.6|p21 protein (Cdc42/Rac)-activated kinase 7 	ENSMUST00000077200.3|Pak7|ENSMUSG00000039913.6|p21 protein (Cdc42/Rac)-activated kinase 7
mm10_v2_chr5_+_108065742_108065767	0.478739	AAUACUG	ENSMUST00000081567.4|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000170319.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000112626.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2
mm10_v2_chr5_+_142960343_142960363	0.473796	AAUACUG	ENSMUST00000031565.8|Fscn1|ENSMUSG00000029581.8|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)
mm10_v2_chr5_+_147430407_147430545	0.472102	AAUACUG	ENSMUST00000176600.1|Pan3|ENSMUSG00000029647.9|PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm10_v2_chr14_+_63606491_63606527	0.471238	AAUACUG	ENSMUST00000119973.2|Xkr6|ENSMUSG00000035067.9|X Kell blood group precursor related family member 6 homolog
mm10_v2_chr14_+_45351473_45351473	0.471222	AAUACUG	ENSMUST00000111835.2|Styx|ENSMUSG00000053205.8|serine/threonine/tyrosine interaction protein
mm10_v2_chr9_+_65908967_65909020	0.470586	AAUACUG	ENSMUST00000034949.3|Csnk1g1|ENSMUSG00000032384.9|casein kinase 1, gamma 1 	ENSMUST00000154589.1|Csnk1g1|ENSMUSG00000032384.9|casein kinase 1, gamma 1
mm10_v2_chr15_-_38300693_38300715	0.466161	AAUACUG	ENSMUST00000074043.5|Klf10|ENSMUSG00000037465.9|Kruppel-like factor 10
mm10_v2_chr18_+_65580230_65580400	0.465568	AAUACUG	ENSMUST00000049016.5|Zfp532|ENSMUSG00000042439.6|zinc finger protein 532 	ENSMUST00000183236.1|Zfp532|ENSMUSG00000042439.6|zinc finger protein 532
mm10_v2_chr13_-_100552442_100552498	0.461166	AAUACUG	ENSMUST00000159515.1|Ocln|ENSMUSG00000021638.6|occludin 	ENSMUST00000160859.1|Ocln|ENSMUSG00000021638.6|occludin 	ENSMUST00000069756.4|Ocln|ENSMUSG00000021638.6|occludin
mm10_v2_chr13_-_46727932_46728005	0.453243	AAUACUG	ENSMUST00000021803.9|Nup153|ENSMUSG00000021374.9|nucleoporin 153
mm10_v2_chr10_-_80387642_80387666	0.451619	AAUACUG	ENSMUST00000062946.6|Mex3d|ENSMUSG00000048696.10|mex3 homolog D (C. elegans) 	ENSMUST00000105350.1|Mex3d|ENSMUSG00000048696.10|mex3 homolog D (C. elegans)
mm10_v2_chr5_-_86172747_86172803	0.449766	AAUACUG	ENSMUST00000039373.7|Uba6|ENSMUSG00000035898.7|ubiquitin-like modifier activating enzyme 6
mm10_v2_chr9_+_108692116_108692193	0.449276	AAUACUG	ENSMUST00000035220.6|Prkar2a|ENSMUSG00000032601.8|protein kinase, cAMP dependent regulatory, type II alpha
mm10_v2_chr2_-_148732457_148732467	0.449184	AAUACUG	ENSMUST00000028926.6|Napb|ENSMUSG00000027438.8|N-ethylmaleimide sensitive fusion protein attachment protein beta
mm10_v2_chr10_+_69533761_69533776	0.447182	AAUACUG	ENSMUST00000182884.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr8_+_106210936_106210974	0.44422	AAUACUG	ENSMUST00000071592.5|Prmt7|ENSMUSG00000060098.5|protein arginine N-methyltransferase 7
mm10_v2_chr17_-_31855782_31855802	0.443572	AAUACUG	ENSMUST00000024839.4|Sik1|ENSMUSG00000024042.6|salt inducible kinase 1
mm10_v2_chr17_+_27856443_27856511	0.438286	AAUACUG	ENSMUST00000114849.1|Uhrf1bp1|ENSMUSG00000039512.11|UHRF1 (ICBP90) binding protein 1
mm10_v2_chr3_+_90341654_90341654	0.436332	AAUACUG	ENSMUST00000049382.4|Gatad2b|ENSMUSG00000042390.5|GATA zinc finger domain containing 2B
mm10_v2_chr13_-_119790805_119790805	0.435984	AAUACUG	ENSMUST00000178271.1|Zfp131|ENSMUSG00000094870.1|zinc finger protein 131 	ENSMUST00000177916.1|Zfp131|ENSMUSG00000094870.1|zinc finger protein 131
mm10_v2_chr10_-_37138863_37138937	0.434977	AAUACUG	ENSMUST00000092584.5|Marcks|ENSMUSG00000069662.5|myristoylated alanine rich protein kinase C substrate
mm10_v2_chrX_+_163908982_163909017	0.434141	AAUACUG	ENSMUST00000069041.8|Ap1s2|ENSMUSG00000031367.9|adaptor-related protein complex 1, sigma 2 subunit
mm10_v2_chr5_-_89883321_89883343	0.43281	AAUACUG	ENSMUST00000163159.1|Adamts3|ENSMUSG00000043635.6|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3 	ENSMUST00000061427.5|Adamts3|ENSMUSG00000043635.6|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3
mm10_v2_chr5_+_65763518_65763541	0.43273	AAUACUG	ENSMUST00000113738.1|N4bp2|ENSMUSG00000037795.8|NEDD4 binding protein 2
mm10_v2_chr15_+_80234071_80234146	0.421464	AAUACUG	ENSMUST00000023048.4|Mief1|ENSMUSG00000022412.6|mitochondrial elongation factor 1 	ENSMUST00000166030.1|Mief1|ENSMUSG00000022412.6|mitochondrial elongation factor 1
mm10_v2_chr1_-_46854046_46854079	0.418975	AAUACUG	ENSMUST00000027131.4|Slc39a10|ENSMUSG00000025986.5|solute carrier family 39 (zinc transporter), member 10
mm10_v2_chr11_+_76202007_76202030	0.416484	AAUACUG	ENSMUST00000094014.3|Fam57a|ENSMUSG00000069808.7|family with sequence similarity 57, member A
mm10_v2_chr17_+_34894515_34894573	0.416322	AAUACUG	ENSMUST00000052778.8|Zbtb12|ENSMUSG00000049823.8|zinc finger and BTB domain containing 12
mm10_v2_chr3_-_51560816_51560878	0.407386	AAUACUG	ENSMUST00000037141.7|Setd7|ENSMUSG00000037111.8|SET domain containing (lysine methyltransferase) 7
mm10_v2_chr2_+_163994960_163994960	0.406476	AAUACUG	ENSMUST00000018470.3|Ywhab|ENSMUSG00000018326.3|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm10_v2_chr4_-_16163611_16163647	0.389114	AAUACUG	ENSMUST00000037035.5|Ripk2|ENSMUSG00000041135.9|receptor (TNFRSF)-interacting serine-threonine kinase 2
mm10_v2_chr6_-_97617536_97617597	0.387778	AAUACUG	ENSMUST00000113355.2|Frmd4b|ENSMUSG00000030064.10|FERM domain containing 4B
mm10_v2_chr3_+_34649987_34650005	0.382551	AAUACUG	ENSMUST00000099151.2|Sox2|ENSMUSG00000074637.4|SRY-box containing gene 2
mm10_v2_chr5_+_150673739_150673827	0.38031	AAUACUG	ENSMUST00000016569.4|Pds5b|ENSMUSG00000034021.9|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae) 	ENSMUST00000038900.8|Pds5b|ENSMUSG00000034021.9|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
mm10_v2_chr1_-_136960427_136960494	0.378104	AAUACUG	ENSMUST00000027649.7|Nr5a2|ENSMUSG00000026398.8|nuclear receptor subfamily 5, group A, member 2
mm10_v2_chr16_-_32003122_32003287	0.368012	AAUACUG	ENSMUST00000023457.5|Senp5|ENSMUSG00000022772.5|SUMO/sentrin specific peptidase 5
mm10_v2_chr7_+_27591513_27591562	0.36272	AAUACUG	ENSMUST00000108344.2|Akt2|ENSMUSG00000004056.9|thymoma viral proto-oncogene 2
mm10_v2_chr7_-_34313531_34313568	0.361026	AAUACUG	ENSMUST00000108074.1|4931406P16Rik|ENSMUSG00000066571.7|RIKEN cDNA 4931406P16 gene
mm10_v2_chr5_+_21737141_21737179	0.360668	AAUACUG	ENSMUST00000030882.5|Pmpcb|ENSMUSG00000029017.7|peptidase (mitochondrial processing) beta
mm10_v2_chr6_-_53068562_53068656	0.359427	AAUACUG	ENSMUST00000074541.5|Jazf1|ENSMUSG00000063568.5|JAZF zinc finger 1
mm10_v2_chrX_-_103821940_103821992	0.356965	AAUACUG	ENSMUST00000042664.5|Slc16a2|ENSMUSG00000033965.6|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm10_v2_chr2_+_18677002_18677053	0.356231	AAUACUG	ENSMUST00000028071.6|Bmi1|ENSMUSG00000026739.7|Bmi1 polycomb ring finger oncogene
mm10_v2_chr12_-_59011996_59012034	0.355725	AAUACUG	ENSMUST00000021375.5|Sec23a|ENSMUSG00000020986.7|SEC23A (S. cerevisiae)
mm10_v2_chr2_-_125859139_125859221	0.355057	AAUACUG	ENSMUST00000110463.1|Cops2|ENSMUSG00000027206.7|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana) 	ENSMUST00000028635.5|Cops2|ENSMUSG00000027206.7|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)
mm10_v2_chr9_+_32696005_32696121	0.352962	AAUACUG	ENSMUST00000034534.6|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000050797.7|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000184887.1|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain
mm10_v2_chr16_+_20498817_20498866	0.352885	AAUACUG	ENSMUST00000003320.6|Eif2b5|ENSMUSG00000003235.6|eukaryotic translation initiation factor 2B, subunit 5 epsilon
mm10_v2_chr18_+_74065102_74065102	0.348673	AAUACUG	ENSMUST00000066583.1|Gm9925|ENSMUSG00000053861.1|predicted gene 9925
mm10_v2_chr9_-_31211805_31211824	0.347741	AAUACUG	ENSMUST00000072634.7|Aplp2|ENSMUSG00000031996.10|amyloid beta (A4) precursor-like protein 2 	ENSMUST00000079758.7|Aplp2|ENSMUSG00000031996.10|amyloid beta (A4) precursor-like protein 2
mm10_v2_chr15_-_96699698_96699717	0.347561	AAUACUG	ENSMUST00000023099.6|Slc38a2|ENSMUSG00000022462.6|solute carrier family 38, member 2
mm10_v2_chr16_-_59555752_59555752	0.34586	AAUACUG	ENSMUST00000179383.1|Crybg3|ENSMUSG00000022723.9|beta-gamma crystallin domain containing 3 	ENSMUST00000044604.8|Crybg3|ENSMUSG00000022723.9|beta-gamma crystallin domain containing 3
mm10_v2_chr1_+_39900883_39900963	0.343997	AAUACUG	ENSMUST00000163854.2|Map4k4|ENSMUSG00000026074.8|mitogen-activated protein kinase kinase kinase kinase 4 	ENSMUST00000168431.1|Map4k4|ENSMUSG00000026074.8|mitogen-activated protein kinase kinase kinase kinase 4
mm10_v2_chr9_+_78113275_78113346	0.343952	AAUACUG	ENSMUST00000009972.5|Ick|ENSMUSG00000009828.9|intestinal cell kinase 	ENSMUST00000117330.1|Ick|ENSMUSG00000009828.9|intestinal cell kinase 	ENSMUST00000044551.7|Ick|ENSMUSG00000009828.9|intestinal cell kinase
mm10_v2_chr1_+_62703285_62703317	0.332223	AAUACUG	ENSMUST00000102822.2|Nrp2|ENSMUSG00000025969.9|neuropilin 2 	ENSMUST00000075144.5|Nrp2|ENSMUSG00000025969.9|neuropilin 2
mm10_v2_chr5_+_142401484_142401532	0.326059	AAUACUG	ENSMUST00000072837.5|Foxk1|ENSMUSG00000056493.8|forkhead box K1
mm10_v2_chr11_+_80209019_80209057	0.32491	AAUACUG	ENSMUST00000077451.7|Rhot1|ENSMUSG00000017686.10|ras homolog gene family, member T1 	ENSMUST00000055056.9|Rhot1|ENSMUSG00000017686.10|ras homolog gene family, member T1
mm10_v2_chr12_-_32061221_32061301	0.322097	AAUACUG	ENSMUST00000003079.5|Prkar2b|ENSMUSG00000002997.9|protein kinase, cAMP dependent regulatory, type II beta 	ENSMUST00000036497.9|Prkar2b|ENSMUSG00000002997.9|protein kinase, cAMP dependent regulatory, type II beta
mm10_v2_chr10_-_78591945_78591964	0.320554	AAUACUG	ENSMUST00000040580.6|Syde1|ENSMUSG00000032714.6|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
mm10_v2_chr15_-_25413752_25413773	0.317384	AAUACUG	ENSMUST00000058845.7|Basp1|ENSMUSG00000045763.7|brain abundant, membrane attached signal protein 1
mm10_v2_chr4_+_42949814_42949923	0.316176	AAUACUG	ENSMUST00000037872.3|Dnajb5|ENSMUSG00000036052.8|DnaJ (Hsp40) homolog, subfamily B, member 5 	ENSMUST00000098112.2|Dnajb5|ENSMUSG00000036052.8|DnaJ (Hsp40) homolog, subfamily B, member 5
mm10_v2_chr2_+_15055274_15055379	0.315868	AAUACUG	ENSMUST00000069870.3|Arl5b|ENSMUSG00000017418.7|ADP-ribosylation factor-like 5B
mm10_v2_chr8_+_110919916_110919994	0.315629	AAUACUG	ENSMUST00000117534.1|St3gal2|ENSMUSG00000031749.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 2 	ENSMUST00000034197.4|St3gal2|ENSMUSG00000031749.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 2
mm10_v2_chr9_+_113812547_113812621	0.310874	AAUACUG	ENSMUST00000166734.2|Clasp2|ENSMUSG00000033392.9|CLIP associating protein 2 	ENSMUST00000111838.2|Clasp2|ENSMUSG00000033392.9|CLIP associating protein 2 	ENSMUST00000163895.2|Clasp2|ENSMUSG00000033392.9|CLIP associating protein 2
mm10_v2_chr16_+_57121705_57121761	0.308971	AAUACUG	ENSMUST00000166897.1|Tomm70a|ENSMUSG00000022752.8|translocase of outer mitochondrial membrane 70 homolog A (yeast)
mm10_v2_chr11_-_86544754_86544805	0.305217	AAUACUG	ENSMUST00000138810.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000058286.2|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000154617.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1
mm10_v2_chr11_+_88047693_88047727	0.304461	AAUACUG	ENSMUST00000079866.4|Srsf1|ENSMUSG00000018379.11|serine/arginine-rich splicing factor 1
mm10_v2_chr14_-_70351354_70351435	0.300613	AAUACUG	ENSMUST00000143153.1|Slc39a14|ENSMUSG00000022094.9|solute carrier family 39 (zinc transporter), member 14 	ENSMUST00000127000.1|Slc39a14|ENSMUSG00000022094.9|solute carrier family 39 (zinc transporter), member 14 	ENSMUST00000068044.7|Slc39a14|ENSMUSG00000022094.9|solute carrier family 39 (zinc transporter), member 14 	ENSMUST00000022688.3|Slc39a14|ENSMUSG00000022094.9|solute carrier family 39 (zinc transporter), member 14
mm10_v2_chr7_-_109960461_109960477	0.299453	AAUACUG	ENSMUST00000080437.6|Dennd5a|ENSMUSG00000035901.8|DENN/MADD domain containing 5A
mm10_v2_chr11_-_87086752_87086781	0.294158	AAUACUG	ENSMUST00000020801.7|Smg8|ENSMUSG00000020495.7|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)
mm10_v2_chr4_-_56947411_56947447	0.292175	AAUACUG	ENSMUST00000107609.3|Tmem245|ENSMUSG00000055296.8|transmembrane protein 245 	ENSMUST00000068792.6|Tmem245|ENSMUSG00000055296.8|transmembrane protein 245
mm10_v2_chr5_+_135023482_135023507	0.291196	AAUACUG	ENSMUST00000005509.4|Stx1a|ENSMUSG00000007207.4|syntaxin 1A (brain)
mm10_v2_chr10_+_39369750_39369804	0.283802	AAUACUG	ENSMUST00000063091.6|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene 	ENSMUST00000099967.3|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene 	ENSMUST00000126486.1|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene
mm10_v2_chr3_-_51277470_51277514	0.283652	AAUACUG	ENSMUST00000108053.2|Elf2|ENSMUSG00000037174.12|E74-like factor 2 	ENSMUST00000108051.1|Elf2|ENSMUSG00000037174.12|E74-like factor 2
mm10_v2_chrX_-_51018011_51018032	0.281224	AAUACUG	ENSMUST00000053593.7|Rap2c|ENSMUSG00000050029.7|RAP2C, member of RAS oncogene family
mm10_v2_chr7_+_63444741_63444762	0.274532	AAUACUG	ENSMUST00000058476.7|Otud7a|ENSMUSG00000033510.8|OTU domain containing 7A
mm10_v2_chr18_+_14783238_14783259	0.271448	AAUACUG	ENSMUST00000169862.1|Taf4b|ENSMUSG00000054321.6|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chrX_+_151046131_151046150	0.270648	AAUACUG	ENSMUST00000112685.1|Fgd1|ENSMUSG00000025265.8|FYVE, RhoGEF and PH domain containing 1
mm10_v2_chr16_+_13358375_13358439	0.270343	AAUACUG	ENSMUST00000149359.1|Mkl2|ENSMUSG00000009569.8|MKL/myocardin-like 2
mm10_v2_chr9_+_14276301_14276347	0.269699	AAUACUG	ENSMUST00000034507.7|Sesn3|ENSMUSG00000032009.7|sestrin 3
mm10_v2_chr2_+_178414512_178414591	0.266508	AAUACUG	ENSMUST00000094251.4|Fam217b|ENSMUSG00000070476.4|family with sequence similarity 217, member B
mm10_v2_chr11_+_77686155_77686179	0.265845	AAUACUG	ENSMUST00000100802.4|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2 	ENSMUST00000181023.1|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2
mm10_v2_chr6_-_53820764_53820837	0.265111	AAUACUG	ENSMUST00000127748.2|Tril|ENSMUSG00000043496.5|TLR4 interactor with leucine-rich repeats
mm10_v2_chr19_+_29522263_29522341	0.261641	AAUACUG	ENSMUST00000043610.6|C030046E11Rik|ENSMUSG00000038658.9|RIKEN cDNA C030046E11 gene 	ENSMUST00000162184.1|C030046E11Rik|ENSMUSG00000038658.9|RIKEN cDNA C030046E11 gene
mm10_v2_chr13_+_15463837_15463980	0.255167	AAUACUG	ENSMUST00000110510.3|Gli3|ENSMUSG00000021318.9|GLI-Kruppel family member GLI3
mm10_v2_chr3_+_54693088_54693105	0.252588	AAUACUG	ENSMUST00000170552.1|Supt20|ENSMUSG00000027751.9|suppressor of Ty 20
mm10_v2_chr17_-_25274299_25274317	0.252375	AAUACUG	ENSMUST00000172587.1|Ube2i|ENSMUSG00000015120.9|ubiquitin-conjugating enzyme E2I 	ENSMUST00000049911.9|Ube2i|ENSMUSG00000015120.9|ubiquitin-conjugating enzyme E2I 	ENSMUST00000173713.1|Ube2i|ENSMUSG00000015120.9|ubiquitin-conjugating enzyme E2I
mm10_v2_chr18_-_60713389_60713389	0.250132	AAUACUG	ENSMUST00000169273.1|Ndst1|ENSMUSG00000054008.8|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
mm10_v2_chr1_-_16619437_16619489	0.248567	AAUACUG	ENSMUST00000117146.1|Ube2w|ENSMUSG00000025939.11|ubiquitin-conjugating enzyme E2W (putative)
mm10_v2_chr10_+_128377086_128377155	0.247607	AAUACUG	ENSMUST00000014642.3|Ankrd52|ENSMUSG00000014498.3|ankyrin repeat domain 52
mm10_v2_chr11_-_22982090_22982382	0.245019	AAUACUG	ENSMUST00000160826.1|RP23-242C19.7|ENSMUSG00000098650.1|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 (B3gnt2), transcript variant 2, mRNA 	ENSMUST00000093270.5|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000071068.8|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000159081.1|Commd1|ENSMUSG00000051355.12|COMM domain containing 1
mm10_v2_chr8_+_121084352_121084474	0.244333	AAUACUG	ENSMUST00000181504.1|Foxf1|ENSMUSG00000042812.4|forkhead box F1 	ENSMUST00000050684.1|Foxf1|ENSMUSG00000042812.4|forkhead box F1
mm10_v2_chr16_+_42907563_42907684	0.243035	AAUACUG	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr7_-_133015248_133015329	0.242426	AAUACUG	ENSMUST00000169570.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr10_-_44458715_44458751	0.241772	AAUACUG	ENSMUST00000039174.4|Prdm1|ENSMUSG00000038151.6|PR domain containing 1, with ZNF domain
mm10_v2_chr2_+_119675062_119675095	0.241305	AAUACUG	ENSMUST00000028767.8|Rtf1|ENSMUSG00000027304.9|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm10_v2_chr8_+_88199194_88199224	0.237676	AAUACUG	ENSMUST00000119033.1|Papd5|ENSMUSG00000036779.6|PAP associated domain containing 5 	ENSMUST00000066748.3|Papd5|ENSMUSG00000036779.6|PAP associated domain containing 5 	ENSMUST00000118952.1|Papd5|ENSMUSG00000036779.6|PAP associated domain containing 5
mm10_v2_chr7_-_73541738_73541758	0.236329	AAUACUG	ENSMUST00000169922.2|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr8_+_84969587_84969636	0.235976	AAUACUG	ENSMUST00000109734.1|Prdx2|ENSMUSG00000005161.9|peroxiredoxin 2 	ENSMUST00000005292.8|Prdx2|ENSMUSG00000005161.9|peroxiredoxin 2
mm10_v2_chr5_-_123684289_123684379	0.235336	AAUACUG	ENSMUST00000111564.1|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1 	ENSMUST00000063905.5|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1
mm10_v2_chr2_+_68861433_68861510	0.234173	AAUACUG	ENSMUST00000028426.2|Cers6|ENSMUSG00000027035.4|ceramide synthase 6
mm10_v2_chr18_-_39490649_39490717	0.232417	AAUACUG	ENSMUST00000115567.1|Nr3c1|ENSMUSG00000024431.8|nuclear receptor subfamily 3, group C, member 1
mm10_v2_chrX_+_68678541_68678554	0.227798	AAUACUG	ENSMUST00000088546.5|Fmr1|ENSMUSG00000000838.11|fragile X mental retardation syndrome 1
mm10_v2_chr2_+_31572701_31572725	0.227384	AAUACUG	ENSMUST00000055244.6|Fubp3|ENSMUSG00000026843.9|far upstream element (FUSE) binding protein 3
mm10_v2_chr1_+_90603425_90603511	0.226366	AAUACUG	ENSMUST00000036153.5|Cops8|ENSMUSG00000034432.5|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)
mm10_v2_chr2_-_66410064_66410134	0.225916	AAUACUG	ENSMUST00000112366.1|Scn1a|ENSMUSG00000064329.7|sodium channel, voltage-gated, type I, alpha
mm10_v2_chr12_-_46818749_46818788	0.225744	AAUACUG	ENSMUST00000021438.6|Nova1|ENSMUSG00000021047.6|neuro-oncological ventral antigen 1
mm10_v2_chr15_-_77307043_77307058	0.222387	AAUACUG	ENSMUST00000048145.5|Rbfox2|ENSMUSG00000033565.10|RNA binding protein, fox-1 homolog (C. elegans) 2 	ENSMUST00000171751.1|Rbfox2|ENSMUSG00000033565.10|RNA binding protein, fox-1 homolog (C. elegans) 2
mm10_v2_chr2_+_178118975_178119158	0.218916	AAUACUG	ENSMUST00000108917.1|Phactr3|ENSMUSG00000027525.11|phosphatase and actin regulator 3
mm10_v2_chr17_+_26676390_26676401	0.218483	AAUACUG	ENSMUST00000015719.8|Atp6v0e|ENSMUSG00000015575.8|ATPase, H+ transporting, lysosomal V0 subunit E
mm10_v2_chr4_-_83486453_83486478	0.217376	AAUACUG	ENSMUST00000107214.2|Psip1|ENSMUSG00000028484.10|PC4 and SFRS1 interacting protein 1 	ENSMUST00000107215.2|Psip1|ENSMUSG00000028484.10|PC4 and SFRS1 interacting protein 1 	ENSMUST00000030207.8|Psip1|ENSMUSG00000028484.10|PC4 and SFRS1 interacting protein 1
mm10_v2_chr6_+_65042575_65042667	0.215709	AAUACUG	ENSMUST00000031984.6|Smarcad1|ENSMUSG00000029920.7|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm10_v2_chr4_-_82505749_82505802	0.214844	AAUACUG	ENSMUST00000107245.2|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000107246.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr4_+_119814495_119814526	0.212287	AAUACUG	ENSMUST00000106307.2|Hivep3|ENSMUSG00000028634.10|human immunodeficiency virus type I enhancer binding protein 3
mm10_v2_chr12_-_111713185_111713257	0.210475	AAUACUG	ENSMUST00000054636.6|Bag5|ENSMUSG00000049792.6|BCL2-associated athanogene 5
mm10_v2_chr7_-_116038734_116038750	0.20865	AAUACUG	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr5_+_137518880_137518880	0.204224	AAUACUG	ENSMUST00000031727.7|Gigyf1|ENSMUSG00000029714.7|GRB10 interacting GYF protein 1
mm10_v2_chr1_-_162740350_162740533	0.203049	AAUACUG	ENSMUST00000182331.1|Prrc2c|ENSMUSG00000040225.9|proline-rich coiled-coil 2C 	ENSMUST00000183011.1|Prrc2c|ENSMUSG00000040225.9|proline-rich coiled-coil 2C 	ENSMUST00000182593.1|Prrc2c|ENSMUSG00000040225.9|proline-rich coiled-coil 2C 	ENSMUST00000182149.1|Prrc2c|ENSMUSG00000040225.9|proline-rich coiled-coil 2C
mm10_v2_chr18_-_84951477_84951536	0.199934	AAUACUG	ENSMUST00000025547.2|Timm21|ENSMUSG00000024645.4|tranlocase of inner mitochondrial membrane 21
mm10_v2_chr11_-_107131922_107131954	0.196495	AAUACUG	ENSMUST00000057892.8|Bptf|ENSMUSG00000040481.10|bromodomain PHD finger transcription factor
mm10_v2_chr7_+_35119285_35119301	0.195894	AAUACUG	ENSMUST00000042985.9|Cebpa|ENSMUSG00000034957.9|CCAAT/enhancer binding protein (C/EBP), alpha
mm10_v2_chr14_+_31251454_31251530	0.194791	AAUACUG	ENSMUST00000022458.4|Bap1|ENSMUSG00000021901.4|Brca1 associated protein 1
mm10_v2_chr4_-_154097105_154097173	0.192556	AAUACUG	ENSMUST00000105643.1|Trp73|ENSMUSG00000029026.10|transformation related protein 73 	ENSMUST00000133533.1|Trp73|ENSMUSG00000029026.10|transformation related protein 73 	ENSMUST00000097762.4|Trp73|ENSMUSG00000029026.10|transformation related protein 73
mm10_v2_chr15_+_99702278_99702312	0.191564	AAUACUG	ENSMUST00000023759.4|Smarcd1|ENSMUSG00000023018.4|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm10_v2_chr6_-_39206782_39206831	0.191444	AAUACUG	ENSMUST00000002305.8|Jhdm1d|ENSMUSG00000042599.8|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm10_v2_chr4_-_95052188_95052222	0.189441	AAUACUG	ENSMUST00000107094.1|Jun|ENSMUSG00000052684.3|Jun oncogene
mm10_v2_chr3_-_50443603_50443615	0.189241	AAUACUG	ENSMUST00000029297.4|Slc7a11|ENSMUSG00000027737.5|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm10_v2_chr13_+_31625802_31625816	0.189151	AAUACUG	ENSMUST00000042054.2|Foxf2|ENSMUSG00000038402.2|forkhead box F2
mm10_v2_chr13_+_110395041_110395057	0.188638	AAUACUG	ENSMUST00000022212.7|Plk2|ENSMUSG00000021701.7|polo-like kinase 2
mm10_v2_chr13_-_68999518_68999565	0.188506	AAUACUG	ENSMUST00000022013.7|Adcy2|ENSMUSG00000021536.7|adenylate cyclase 2
mm10_v2_chr16_+_4594683_4594735	0.187884	AAUACUG	ENSMUST00000014447.6|Glis2|ENSMUSG00000014303.7|GLIS family zinc finger 2
mm10_v2_chr1_-_134955908_134955955	0.187665	AAUACUG	ENSMUST00000045665.6|Ppp1r12b|ENSMUSG00000073557.5|protein phosphatase 1, regulatory (inhibitor) subunit 12B 	ENSMUST00000086444.4|Ppp1r12b|ENSMUSG00000073557.5|protein phosphatase 1, regulatory (inhibitor) subunit 12B 	ENSMUST00000112163.1|Ppp1r12b|ENSMUSG00000073557.5|protein phosphatase 1, regulatory (inhibitor) subunit 12B
mm10_v2_chr3_+_32436151_32436151	0.186962	AAUACUG	ENSMUST00000029201.7|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr14_-_121797670_121797753	0.184336	AAUACUG	ENSMUST00000100299.3|Dock9|ENSMUSG00000025558.9|dedicator of cytokinesis 9
mm10_v2_chr9_-_114390633_114390687	0.180177	AAUACUG	ENSMUST00000084881.4|Crtap|ENSMUSG00000032431.6|cartilage associated protein
mm10_v2_chr7_+_112679314_112679325	0.17889	AAUACUG	ENSMUST00000084705.5|Tead1|ENSMUSG00000055320.10|TEA domain family member 1 	ENSMUST00000059768.10|Tead1|ENSMUSG00000055320.10|TEA domain family member 1
mm10_v2_chr6_+_39592569_39592588	0.17877	AAUACUG	ENSMUST00000135671.1|Ndufb2|ENSMUSG00000002416.7|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2 	ENSMUST00000119379.1|Ndufb2|ENSMUSG00000002416.7|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2
mm10_v2_chr14_-_26971232_26971232	0.178296	AAUACUG	ENSMUST00000036570.4|Appl1|ENSMUSG00000040760.4|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm10_v2_chr4_+_155601414_155601443	0.17816	AAUACUG	ENSMUST00000105608.2|Slc35e2|ENSMUSG00000042202.9|solute carrier family 35, member E2
mm10_v2_chr18_+_53862087_53862143	0.178023	AAUACUG	ENSMUST00000069597.6|Csnk1g3|ENSMUSG00000073563.2|casein kinase 1, gamma 3
mm10_v2_chr11_+_94990996_94991035	0.17795	AAUACUG	ENSMUST00000038696.5|Ppp1r9b|ENSMUSG00000038976.6|protein phosphatase 1, regulatory subunit 9B
mm10_v2_chr10_-_94944578_94944578	0.177932	AAUACUG	ENSMUST00000099337.3|Plxnc1|ENSMUSG00000074785.4|plexin C1
mm10_v2_chr5_-_99252839_99252927	0.177661	AAUACUG	ENSMUST00000168092.1|Rasgef1b|ENSMUSG00000029333.8|RasGEF domain family, member 1B 	ENSMUST00000031276.8|Rasgef1b|ENSMUSG00000029333.8|RasGEF domain family, member 1B
mm10_v2_chr4_+_57845240_57845265	0.177377	AAUACUG	ENSMUST00000102903.1|Akap2|ENSMUSG00000038729.14|A kinase (PRKA) anchor protein 2 	ENSMUST00000107598.3|Akap2|ENSMUSG00000038729.14|A kinase (PRKA) anchor protein 2
mm10_v2_chr6_-_119417479_119417530	0.172916	AAUACUG	ENSMUST00000032272.6|Adipor2|ENSMUSG00000030168.7|adiponectin receptor 2
mm10_v2_chr17_-_46556158_46556188	0.169844	AAUACUG	ENSMUST00000015749.5|Srf|ENSMUSG00000015605.5|serum response factor
mm10_v2_chr12_+_33429605_33429649	0.169503	AAUACUG	ENSMUST00000020877.7|Twistnb|ENSMUSG00000020561.7|TWIST neighbor
mm10_v2_chr6_-_116193426_116193501	0.169229	AAUACUG	ENSMUST00000088896.3|Tmcc1|ENSMUSG00000030126.11|transmembrane and coiled coil domains 1
mm10_v2_chr6_-_148831448_148831494	0.166154	AAUACUG	ENSMUST00000048418.7|Ipo8|ENSMUSG00000040029.8|importin 8
mm10_v2_chr2_-_152398046_152398076	0.166066	AAUACUG	ENSMUST00000063332.8|Sox12|ENSMUSG00000051817.8|SRY-box containing gene 12 	ENSMUST00000182625.1|Sox12|ENSMUSG00000051817.8|SRY-box containing gene 12
mm10_v2_chr11_+_52098681_52098796	0.159828	AAUACUG	ENSMUST00000020608.2|Ppp2ca|ENSMUSG00000020349.4|protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
mm10_v2_chr3_-_103791537_103791563	0.156884	AAUACUG	ENSMUST00000118317.1|Hipk1|ENSMUSG00000008730.11|homeodomain interacting protein kinase 1
mm10_v2_chr5_+_140607334_140607352	0.156052	AAUACUG	ENSMUST00000031555.1|Lfng|ENSMUSG00000029570.1|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm10_v2_chrX_-_105929397_105929408	0.155108	AAUACUG	ENSMUST00000113573.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human) 	ENSMUST00000130980.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm10_v2_chr3_+_152210458_152210534	0.153685	AAUACUG	ENSMUST00000166984.1|Fubp1|ENSMUSG00000028034.9|far upstream element (FUSE) binding protein 1 	ENSMUST00000106121.1|Fubp1|ENSMUSG00000028034.9|far upstream element (FUSE) binding protein 1
mm10_v2_chr3_-_9610074_9610086	0.14626	AAUACUG	ENSMUST00000041124.7|Zfp704|ENSMUSG00000040209.7|zinc finger protein 704
mm10_v2_chr1_+_64690443_64690467	0.145582	AAUACUG	ENSMUST00000114077.1|Ccnyl1|ENSMUSG00000070871.4|cyclin Y-like 1
mm10_v2_chr7_+_120677579_120677630	0.144885	AAUACUG	ENSMUST00000060175.6|BC030336|ENSMUSG00000046096.6|cDNA sequence BC030336
mm10_v2_chr1_+_64532790_64532815	0.144302	AAUACUG	ENSMUST00000049932.5|Creb1|ENSMUSG00000025958.8|cAMP responsive element binding protein 1 	ENSMUST00000087366.4|Creb1|ENSMUSG00000025958.8|cAMP responsive element binding protein 1 	ENSMUST00000171164.1|Creb1|ENSMUSG00000025958.8|cAMP responsive element binding protein 1
mm10_v2_chr7_-_70360593_70360746	0.143984	AAUACUG	ENSMUST00000032768.7|Nr2f2|ENSMUSG00000030551.7|nuclear receptor subfamily 2, group F, member 2
mm10_v2_chr2_+_91457501_91457549	0.141134	AAUACUG	ENSMUST00000028689.3|Lrp4|ENSMUSG00000027253.9|low density lipoprotein receptor-related protein 4
mm10_v2_chr6_+_99692679_99692679	0.138579	AAUACUG	ENSMUST00000101122.1|Gpr27|ENSMUSG00000072875.1|G protein-coupled receptor 27
mm10_v2_chr6_+_4903298_4903346	0.138128	AAUACUG	ENSMUST00000035813.2|Ppp1r9a|ENSMUSG00000032827.9|protein phosphatase 1, regulatory (inhibitor) subunit 9A
mm10_v2_chr19_-_31765027_31765079	0.138096	AAUACUG	ENSMUST00000065067.6|Prkg1|ENSMUSG00000052920.8|protein kinase, cGMP-dependent, type I
mm10_v2_chr15_-_97055942_97055964	0.137358	AAUACUG	ENSMUST00000023101.3|Slc38a4|ENSMUSG00000022464.7|solute carrier family 38, member 4
mm10_v2_chr11_+_106036867_106036924	0.136796	AAUACUG	ENSMUST00000058438.8|Dcaf7|ENSMUSG00000049354.8|DDB1 and CUL4 associated factor 7
mm10_v2_chr19_+_7417586_7417650	0.136773	AAUACUG	ENSMUST00000159348.1|2700081O15Rik|ENSMUSG00000053080.9|RIKEN cDNA 2700081O15 gene
mm10_v2_chr8_-_115707778_115707794	0.136732	AAUACUG	ENSMUST00000109104.1|Maf|ENSMUSG00000055435.6|avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog
mm10_v2_chr11_-_52000432_52000484	0.136413	AAUACUG	ENSMUST00000020657.6|Ube2b|ENSMUSG00000020390.6|ubiquitin-conjugating enzyme E2B
mm10_v2_chr8_+_114205590_114205642	0.134641	AAUACUG	ENSMUST00000049509.6|Vat1l|ENSMUSG00000046844.6|vesicle amine transport protein 1 homolog-like (T. californica) 	ENSMUST00000150963.1|Vat1l|ENSMUSG00000046844.6|vesicle amine transport protein 1 homolog-like (T. californica)
mm10_v2_chr3_-_144205165_144205220	0.134621	AAUACUG	ENSMUST00000120539.1|Lmo4|ENSMUSG00000028266.11|LIM domain only 4
mm10_v2_chr2_+_160731684_160731760	0.13119	AAUACUG	ENSMUST00000174885.1|Plcg1|ENSMUSG00000016933.11|phospholipase C, gamma 1 	ENSMUST00000109462.1|Plcg1|ENSMUSG00000016933.11|phospholipase C, gamma 1
mm10_v2_chr11_+_93996082_93996103	0.130682	AAUACUG	ENSMUST00000041956.7|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr8_+_88118747_88118777	0.13003	AAUACUG	ENSMUST00000095214.3|Cnep1r1|ENSMUSG00000036810.10|CTD nuclear envelope phosphatase 1 regulatory subunit 1
mm10_v2_chr4_+_115839192_115839244	0.12504	AAUACUG	ENSMUST00000019677.5|Mknk1|ENSMUSG00000028708.10|MAP kinase-interacting serine/threonine kinase 1 	ENSMUST00000144427.1|Mknk1|ENSMUSG00000028708.10|MAP kinase-interacting serine/threonine kinase 1 	ENSMUST00000106513.3|Mknk1|ENSMUSG00000028708.10|MAP kinase-interacting serine/threonine kinase 1 	ENSMUST00000130819.1|Mknk1|ENSMUSG00000028708.10|MAP kinase-interacting serine/threonine kinase 1 	ENSMUST00000151203.1|Mknk1|ENSMUSG00000028708.10|MAP kinase-interacting serine/threonine kinase 1 	ENSMUST00000140315.1|Mknk1|ENSMUSG00000028708.10|MAP kinase-interacting serine/threonine kinase 1
mm10_v2_chr6_+_56714891_56714951	0.12431	AAUACUG	ENSMUST00000031805.8|Avl9|ENSMUSG00000029787.8|AVL9 homolog (S. cerevisiase)
mm10_v2_chr14_-_25769033_25769083	0.123206	AAUACUG	ENSMUST00000069180.7|Zcchc24|ENSMUSG00000055538.7|zinc finger, CCHC domain containing 24
mm10_v2_chr4_-_43562397_43562430	0.121897	AAUACUG	ENSMUST00000030187.7|Tln1|ENSMUSG00000028465.10|talin 1
mm10_v2_chr8_+_110721462_110721486	0.121285	AAUACUG	ENSMUST00000052457.8|Mtss1l|ENSMUSG00000033763.8|metastasis suppressor 1-like
mm10_v2_chr4_-_81442756_81442836	0.121193	AAUACUG	ENSMUST00000107262.1|Mpdz|ENSMUSG00000028402.11|multiple PDZ domain protein 	ENSMUST00000102830.3|Mpdz|ENSMUSG00000028402.11|multiple PDZ domain protein
mm10_v2_chrX_+_112604274_112604274	0.121076	AAUACUG	ENSMUST00000071814.6|Zfp711|ENSMUSG00000025529.8|zinc finger protein 711
mm10_v2_chr10_-_40883073_40883143	0.119566	AAUACUG	ENSMUST00000044166.7|Cdc40|ENSMUSG00000038446.7|cell division cycle 40
mm10_v2_chr3_-_119783262_119783388	0.117541	AAUACUG	ENSMUST00000029780.7|Ptbp2|ENSMUSG00000028134.7|polypyrimidine tract binding protein 2
mm10_v2_chr10_+_21295979_21296013	0.116397	AAUACUG	ENSMUST00000020153.8|Hbs1l|ENSMUSG00000019977.9|Hbs1-like (S. cerevisiae) 	ENSMUST00000092674.6|Hbs1l|ENSMUSG00000019977.9|Hbs1-like (S. cerevisiae)
mm10_v2_chr9_-_59036387_59036460	0.114915	AAUACUG	ENSMUST00000068664.5|Neo1|ENSMUSG00000032340.7|neogenin
mm10_v2_chr6_-_99266494_99266540	0.11452	AAUACUG	ENSMUST00000113326.2|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr15_+_96287518_96287604	0.1077	AAUACUG	ENSMUST00000134985.2|Arid2|ENSMUSG00000033237.12|AT rich interactive domain 2 (ARID, RFX-like) 	ENSMUST00000096250.4|Arid2|ENSMUSG00000033237.12|AT rich interactive domain 2 (ARID, RFX-like)
mm10_v2_chr6_-_94700137_94700176	0.107652	AAUACUG	ENSMUST00000101126.2|Lrig1|ENSMUSG00000030029.8|leucine-rich repeats and immunoglobulin-like domains 1 	ENSMUST00000032105.4|Lrig1|ENSMUSG00000030029.8|leucine-rich repeats and immunoglobulin-like domains 1
mm10_v2_chr4_-_132212255_132212303	0.106773	AAUACUG	ENSMUST00000152796.1|Ythdf2|ENSMUSG00000040025.11|YTH domain family 2
mm10_v2_chr16_+_44139821_44139900	0.106276	AAUACUG	ENSMUST00000159514.1|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000161326.1|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000063520.8|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000063542.7|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm10_v2_chr9_-_75559604_75559665	0.10563	AAUACUG	ENSMUST00000072232.7|Tmod3|ENSMUSG00000058587.7|tropomodulin 3
mm10_v2_chr18_+_35562158_35562174	0.102336	AAUACUG	ENSMUST00000166793.1|Matr3|ENSMUSG00000037236.8|matrin 3
mm10_v2_chrX_-_56598069_56598107	0.100002	AAUACUG	ENSMUST00000059899.2|Mmgt1|ENSMUSG00000061273.3|membrane magnesium transporter 1
mm10_v2_chr5_-_123572976_123573031	0.0996907	AAUACUG	ENSMUST00000031388.8|Vps33a|ENSMUSG00000029434.8|vacuolar protein sorting 33A (yeast)
mm10_v2_chr17_+_85613432_85613608	0.0988712	AAUACUG	ENSMUST00000176081.1|Six3|ENSMUSG00000038805.9|sine oculis-related homeobox 3
mm10_v2_chr11_+_32533290_32533305	0.098192	AAUACUG	ENSMUST00000102821.3|Stk10|ENSMUSG00000020272.8|serine/threonine kinase 10
mm10_v2_chr18_+_31759817_31759851	0.0974081	AAUACUG	ENSMUST00000115808.2|Ammecr1l|ENSMUSG00000041915.8|AMME chromosomal region gene 1-like
mm10_v2_chr16_+_84835070_84835124	0.0961668	AAUACUG	ENSMUST00000009120.7|Gabpa|ENSMUSG00000008976.10|GA repeat binding protein, alpha
mm10_v2_chr2_+_122028544_122028563	0.0957628	AAUACUG	ENSMUST00000028668.7|Eif3j1|ENSMUSG00000027236.8|eukaryotic translation initiation factor 3, subunit J1
mm10_v2_chr4_-_44167580_44167608	0.0931057	AAUACUG	ENSMUST00000098098.2|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chr7_+_62348277_62348332	0.0925116	AAUACUG	ENSMUST00000038775.4|Ndn|ENSMUSG00000033585.4|necdin
mm10_v2_chr13_+_118714678_118714701	0.0896626	AAUACUG	ENSMUST00000022246.8|Fgf10|ENSMUSG00000021732.8|fibroblast growth factor 10
mm10_v2_chr19_-_59943647_59943678	0.0891915	AAUACUG	ENSMUST00000171986.1|Rab11fip2|ENSMUSG00000040022.8|RAB11 family interacting protein 2 (class I)
mm10_v2_chr6_+_86849488_86849628	0.0889955	AAUACUG	ENSMUST00000089519.6|Aak1|ENSMUSG00000057230.7|AP2 associated kinase 1 	ENSMUST00000113668.1|Aak1|ENSMUSG00000057230.7|AP2 associated kinase 1
mm10_v2_chr7_-_19310035_19310050	0.0888563	AAUACUG	ENSMUST00000003640.2|Fosb|ENSMUSG00000003545.2|FBJ osteosarcoma oncogene B
mm10_v2_chr11_+_74770822_74770876	0.08653	AAUACUG	ENSMUST00000141755.1|Mettl16|ENSMUSG00000010554.8|methyltransferase like 16 	ENSMUST00000010698.6|Mettl16|ENSMUSG00000010554.8|methyltransferase like 16
mm10_v2_chr7_+_16401187_16401233	0.0859946	AAUACUG	ENSMUST00000098789.3|Zc3h4|ENSMUSG00000059273.7|zinc finger CCCH-type containing 4
mm10_v2_chr11_+_79993062_79993122	0.0848776	AAUACUG	ENSMUST00000017692.8|Suz12|ENSMUSG00000017548.9|suppressor of zeste 12 homolog (Drosophila) 	ENSMUST00000163272.1|Suz12|ENSMUSG00000017548.9|suppressor of zeste 12 homolog (Drosophila)
mm10_v2_chr10_-_120979327_120979373	0.083568	AAUACUG	ENSMUST00000119944.1|Lemd3|ENSMUSG00000048661.8|LEM domain containing 3 	ENSMUST00000119093.1|Lemd3|ENSMUSG00000048661.8|LEM domain containing 3
mm10_v2_chr18_-_20746402_20746422	0.0822932	AAUACUG	ENSMUST00000070080.5|B4galt6|ENSMUSG00000056124.5|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6
mm10_v2_chr11_+_83850832_83850855	0.0822001	AAUACUG	ENSMUST00000021016.3|Hnf1b|ENSMUSG00000020679.5|HNF1 homeobox B
mm10_v2_chr17_-_34603675_34603702	0.0818485	AAUACUG	ENSMUST00000015622.7|Rnf5|ENSMUSG00000015478.7|ring finger protein 5
mm10_v2_chr14_-_74947865_74947883	0.0815934	AAUACUG	ENSMUST00000088970.5|Lrch1|ENSMUSG00000068015.6|leucine-rich repeats and calponin homology (CH) domain containing 1
mm10_v2_chr5_-_23616528_23616597	0.0809343	AAUACUG	ENSMUST00000088392.4|Srpk2|ENSMUSG00000062604.7|serine/arginine-rich protein specific kinase 2
mm10_v2_chr4_+_57434247_57434368	0.0809177	AAUACUG	ENSMUST00000102905.1|Palm2|ENSMUSG00000090053.3|paralemmin 2
mm10_v2_chr9_-_71592346_71592372	0.0786957	AAUACUG	ENSMUST00000093823.1|Myzap|ENSMUSG00000041361.7|myocardial zonula adherens protein
mm10_v2_chr1_+_12692430_12692485	0.0779886	AAUACUG	ENSMUST00000180062.1|Sulf1|ENSMUSG00000016918.9|sulfatase 1 	ENSMUST00000177608.1|Sulf1|ENSMUSG00000016918.9|sulfatase 1
mm10_v2_chr9_-_67559703_67559703	0.0775292	AAUACUG	ENSMUST00000040025.7|Tln2|ENSMUSG00000052698.8|talin 2
mm10_v2_chr14_+_120911177_120911198	0.0758799	AAUACUG	ENSMUST00000032898.7|Ipo5|ENSMUSG00000030662.9|importin 5
mm10_v2_chr13_-_93499803_93499825	0.0728381	AAUACUG	ENSMUST00000065537.7|Jmy|ENSMUSG00000021690.9|junction-mediating and regulatory protein
mm10_v2_chr18_+_76944384_76944444	0.0717774	AAUACUG	ENSMUST00000156454.1|Hdhd2|ENSMUSG00000025421.8|haloacid dehalogenase-like hydrolase domain containing 2 	ENSMUST00000150990.1|Hdhd2|ENSMUSG00000025421.8|haloacid dehalogenase-like hydrolase domain containing 2 	ENSMUST00000026485.7|Hdhd2|ENSMUSG00000025421.8|haloacid dehalogenase-like hydrolase domain containing 2 	ENSMUST00000148955.1|Hdhd2|ENSMUSG00000025421.8|haloacid dehalogenase-like hydrolase domain containing 2
mm10_v2_chr18_-_24530203_24530245	0.0704545	AAUACUG	ENSMUST00000046206.3|Rprd1a|ENSMUSG00000040446.3|regulation of nuclear pre-mRNA domain containing 1A
mm10_v2_chr6_+_108213086_108213123	0.0704421	AAUACUG	ENSMUST00000032192.6|Itpr1|ENSMUSG00000030102.8|inositol 1,4,5-trisphosphate receptor 1
mm10_v2_chr12_+_86241848_86241936	0.0703754	AAUACUG	ENSMUST00000071106.4|Gpatch2l|ENSMUSG00000021254.8|G patch domain containing 2 like
mm10_v2_chrX_+_52912232_52912361	0.0702905	AAUACUG	ENSMUST00000078944.6|Phf6|ENSMUSG00000025626.10|PHD finger protein 6 	ENSMUST00000101587.3|Phf6|ENSMUSG00000025626.10|PHD finger protein 6 	ENSMUST00000154864.2|Phf6|ENSMUSG00000025626.10|PHD finger protein 6
mm10_v2_chr1_-_155417283_155417323	0.0700603	AAUACUG	ENSMUST00000027741.5|Xpr1|ENSMUSG00000026469.8|xenotropic and polytropic retrovirus receptor 1
mm10_v2_chr5_+_43868802_43868866	0.0697737	AAUACUG	ENSMUST00000030964.4|Cd38|ENSMUSG00000029084.4|CD38 antigen
mm10_v2_chr7_+_24902912_24902963	0.0692673	AAUACUG	ENSMUST00000117796.1|Arhgef1|ENSMUSG00000040940.12|Rho guanine nucleotide exchange factor (GEF) 1
mm10_v2_chr10_-_127621107_127621166	0.0689495	AAUACUG	ENSMUST00000049149.8|Lrp1|ENSMUSG00000040249.9|low density lipoprotein receptor-related protein 1
mm10_v2_chr10_-_67096931_67096988	0.0686844	AAUACUG	ENSMUST00000020023.7|Reep3|ENSMUSG00000019873.7|receptor accessory protein 3
mm10_v2_chr19_+_40831248_40831292	0.0677318	AAUACUG	ENSMUST00000025983.6|Ccnj|ENSMUSG00000025010.7|cyclin J 	ENSMUST00000120057.1|Ccnj|ENSMUSG00000025010.7|cyclin J
mm10_v2_chrX_-_133688978_133689005	0.0674232	AAUACUG	ENSMUST00000149154.1|Pcdh19|ENSMUSG00000051323.10|protocadherin 19 	ENSMUST00000167944.1|Pcdh19|ENSMUSG00000051323.10|protocadherin 19
mm10_v2_chr2_+_117121374_117121374	0.0655611	AAUACUG	ENSMUST00000028829.6|Spred1|ENSMUSG00000027351.8|sprouty protein with EVH-1 domain 1, related sequence
mm10_v2_chr16_+_33185045_33185153	0.0622862	AAUACUG	ENSMUST00000039733.8|Osbpl11|ENSMUSG00000022807.8|oxysterol binding protein-like 11
mm10_v2_chr4_-_126429501_126429556	0.0621049	AAUACUG	ENSMUST00000069097.6|Ago3|ENSMUSG00000028842.9|argonaute RISC catalytic subunit 3
mm10_v2_chr16_+_8513429_8513497	0.0619327	AAUACUG	ENSMUST00000065987.7|Abat|ENSMUSG00000057880.6|4-aminobutyrate aminotransferase 	ENSMUST00000115838.1|Abat|ENSMUSG00000057880.6|4-aminobutyrate aminotransferase 	ENSMUST00000115839.2|Abat|ENSMUSG00000057880.6|4-aminobutyrate aminotransferase
mm10_v2_chr6_-_145865483_145865558	0.061728	AAUACUG	ENSMUST00000032386.4|Bhlhe41|ENSMUSG00000030256.5|basic helix-loop-helix family, member e41
mm10_v2_chr10_-_67285180_67285316	0.0610926	AAUACUG	ENSMUST00000159002.1|Nrbf2|ENSMUSG00000075000.5|nuclear receptor binding factor 2 	ENSMUST00000077839.6|Nrbf2|ENSMUSG00000075000.5|nuclear receptor binding factor 2
mm10_v2_chr4_-_154636831_154636873	0.0609903	AAUACUG	ENSMUST00000030902.6|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000105637.1|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000070313.7|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000105636.1|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000105638.2|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000097759.2|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000124771.1|Prdm16|ENSMUSG00000039410.10|PR domain containing 16
mm10_v2_chr1_-_143702832_143702893	0.0594075	AAUACUG	ENSMUST00000018337.7|Cdc73|ENSMUSG00000026361.7|cell division cycle 73, Paf1/RNA polymerase II complex component
mm10_v2_chr4_-_108833608_108833626	0.0564388	AAUACUG	ENSMUST00000102742.4|Btf3l4|ENSMUSG00000028568.10|basic transcription factor 3-like 4
mm10_v2_chr5_-_114380505_114380520	0.0554926	AAUACUG	ENSMUST00000102581.4|Kctd10|ENSMUSG00000001098.9|potassium channel tetramerisation domain containing 10
mm10_v2_chr6_-_126166726_126166761	0.0545421	AAUACUG	ENSMUST00000112244.2|Ntf3|ENSMUSG00000049107.7|neurotrophin 3 	ENSMUST00000050484.7|Ntf3|ENSMUSG00000049107.7|neurotrophin 3
mm10_v2_chr9_+_35421541_35421616	0.0545277	AAUACUG	ENSMUST00000119129.2|Cdon|ENSMUSG00000038119.8|cell adhesion molecule-related/down-regulated by oncogenes
mm10_v2_chr1_-_9748376_9748451	0.0533465	AAUACUG	ENSMUST00000057438.6|Vcpip1|ENSMUSG00000045210.8|valosin containing protein (p97)/p47 complex interacting protein 1
mm10_v2_chr17_+_88440711_88440741	0.0526897	AAUACUG	ENSMUST00000112238.2|Foxn2|ENSMUSG00000034998.12|forkhead box N2 	ENSMUST00000155640.1|Foxn2|ENSMUSG00000034998.12|forkhead box N2
mm10_v2_chr7_-_63938862_63938933	0.0514303	AAUACUG	ENSMUST00000063694.8|Klf13|ENSMUSG00000052040.9|Kruppel-like factor 13
mm10_v2_chr8_-_36613937_36613948	0.0509575	AAUACUG	ENSMUST00000033923.7|Dlc1|ENSMUSG00000031523.10|deleted in liver cancer 1
mm10_v2_chr9_-_52679429_52679429	0.0508486	AAUACUG	ENSMUST00000098768.2|AI593442|ENSMUSG00000078307.2|expressed sequence AI593442
mm10_v2_chr17_+_74338943_74338987	0.0501098	AAUACUG	ENSMUST00000024869.6|Spast|ENSMUSG00000024068.6|spastin
mm10_v2_chr19_-_17837620_17837642	0.0500315	AAUACUG	ENSMUST00000025618.8|Pcsk5|ENSMUSG00000024713.9|proprotein convertase subtilisin/kexin type 5 	ENSMUST00000050715.8|Pcsk5|ENSMUSG00000024713.9|proprotein convertase subtilisin/kexin type 5
mm10_v2_chr7_+_66109474_66109515	0.0498649	AAUACUG	ENSMUST00000036372.6|Chsy1|ENSMUSG00000032640.9|chondroitin sulfate synthase 1
mm10_v2_chr17_+_35135174_35135181	0.0495734	AAUACUG	ENSMUST00000166426.2|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000025250.7|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chrX_-_104413825_104413856	0.048621	AAUACUG	ENSMUST00000033695.5|Abcb7|ENSMUSG00000031333.7|ATP-binding cassette, sub-family B (MDR/TAP), member 7
mm10_v2_chr14_+_14820765_14820815	0.0467493	AAUACUG	ENSMUST00000112631.2|Nek10|ENSMUSG00000042567.13|NIMA (never in mitosis gene a)- related kinase 10 	ENSMUST00000178538.1|Nek10|ENSMUSG00000042567.13|NIMA (never in mitosis gene a)- related kinase 10 	ENSMUST00000112630.2|Nek10|ENSMUSG00000042567.13|NIMA (never in mitosis gene a)- related kinase 10
mm10_v2_chr1_-_54194048_54194048	0.0463785	AAUACUG	ENSMUST00000120904.1|Hecw2|ENSMUSG00000042807.9|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm10_v2_chr2_-_167188787_167188815	0.0460776	AAUACUG	ENSMUST00000059826.8|Kcnb1|ENSMUSG00000050556.8|potassium voltage gated channel, Shab-related subfamily, member 1
mm10_v2_chr12_+_9574437_9574448	0.0457839	AAUACUG	ENSMUST00000057021.7|Osr1|ENSMUSG00000048387.7|odd-skipped related 1 (Drosophila)
mm10_v2_chr13_+_75707484_75707510	0.0429861	AAUACUG	ENSMUST00000001583.6|Ell2|ENSMUSG00000001542.6|elongation factor RNA polymerase II 2
mm10_v2_chr2_+_128967383_128967443	0.0422299	AAUACUG	ENSMUST00000110320.2|Zc3h6|ENSMUSG00000042851.11|zinc finger CCCH type containing 6 	ENSMUST00000110319.2|Zc3h6|ENSMUSG00000042851.11|zinc finger CCCH type containing 6
mm10_v2_chr4_-_55532453_55532485	0.0407349	AAUACUG	ENSMUST00000132746.1|Klf4|ENSMUSG00000003032.8|Kruppel-like factor 4 (gut) 	ENSMUST00000107619.2|Klf4|ENSMUSG00000003032.8|Kruppel-like factor 4 (gut)
mm10_v2_chr12_-_16589743_16589826	0.0406658	AAUACUG	ENSMUST00000111067.2|Lpin1|ENSMUSG00000020593.8|lipin 1 	ENSMUST00000067124.5|Lpin1|ENSMUSG00000020593.8|lipin 1
mm10_v2_chr2_+_52857844_52857868	0.0397806	AAUACUG	ENSMUST00000090952.4|Fmnl2|ENSMUSG00000036053.10|formin-like 2 	ENSMUST00000049483.6|Fmnl2|ENSMUSG00000036053.10|formin-like 2 	ENSMUST00000050719.6|Fmnl2|ENSMUSG00000036053.10|formin-like 2
mm10_v2_chr18_-_62179948_62179986	0.0397545	AAUACUG	ENSMUST00000053640.3|Adrb2|ENSMUSG00000045730.3|adrenergic receptor, beta 2
mm10_v2_chr11_+_73267388_73267539	0.0394532	AAUACUG	ENSMUST00000049676.2|Trpv3|ENSMUSG00000043029.2|transient receptor potential cation channel, subfamily V, member 3
mm10_v2_chrX_-_169320273_169320383	0.0381645	AAUACUG	ENSMUST00000033717.2|Hccs|ENSMUSG00000031352.4|holocytochrome c synthetase 	ENSMUST00000112115.1|Hccs|ENSMUSG00000031352.4|holocytochrome c synthetase
mm10_v2_chr3_-_30969399_30969425	0.0375472	AAUACUG	ENSMUST00000177992.1|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000129817.2|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000168645.1|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000108255.1|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000064718.5|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000099163.3|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila)
mm10_v2_chr2_-_112368021_112368036	0.0359945	AAUACUG	ENSMUST00000028551.3|Emc4|ENSMUSG00000027131.3|ER membrane protein complex subunit 4
mm10_v2_chr9_+_70542872_70542920	0.0344698	AAUACUG	ENSMUST00000049263.7|Sltm|ENSMUSG00000032212.9|SAFB-like, transcription modulator
mm10_v2_chr15_+_81400132_81400215	0.0343143	AAUACUG	ENSMUST00000163754.1|Xpnpep3|ENSMUSG00000022401.5|X-prolyl aminopeptidase (aminopeptidase P) 3, putative 	ENSMUST00000041609.4|Xpnpep3|ENSMUSG00000022401.5|X-prolyl aminopeptidase (aminopeptidase P) 3, putative
mm10_v2_chr17_+_87107621_87107684	0.0329721	AAUACUG	ENSMUST00000041369.6|Socs5|ENSMUSG00000037104.8|suppressor of cytokine signaling 5
mm10_v2_chr3_+_156561792_156561869	0.0324232	AAUACUG	ENSMUST00000074015.4|Negr1|ENSMUSG00000040037.7|neuronal growth regulator 1
mm10_v2_chr13_-_46929718_46929800	0.0320576	AAUACUG	ENSMUST00000056978.7|Kif13a|ENSMUSG00000021375.9|kinesin family member 13A
mm10_v2_chr1_+_55131231_55131249	0.0316203	AAUACUG	ENSMUST00000162364.1|Mob4|ENSMUSG00000025979.7|MOB family member 4, phocein 	ENSMUST00000159311.1|Mob4|ENSMUSG00000025979.7|MOB family member 4, phocein
mm10_v2_chr3_+_94974728_94974753	0.0313248	AAUACUG	ENSMUST00000072287.5|Pi4kb|ENSMUSG00000038861.8|phosphatidylinositol 4-kinase, catalytic, beta polypeptide
mm10_v2_chr4_+_59805829_59805914	0.0311318	AAUACUG	ENSMUST00000030080.6|Snx30|ENSMUSG00000028385.8|sorting nexin family member 30
mm10_v2_chr17_-_78418083_78418131	0.0300288	AAUACUG	ENSMUST00000070039.7|Fez2|ENSMUSG00000056121.9|fasciculation and elongation protein zeta 2 (zygin II) 	ENSMUST00000112487.1|Fez2|ENSMUSG00000056121.9|fasciculation and elongation protein zeta 2 (zygin II)
mm10_v2_chr17_-_79896028_79896123	0.0298276	AAUACUG	ENSMUST00000068282.5|Atl2|ENSMUSG00000059811.6|atlastin GTPase 2 	ENSMUST00000112437.1|Atl2|ENSMUSG00000059811.6|atlastin GTPase 2
mm10_v2_chr19_+_16132812_16132910	0.0288858	AAUACUG	ENSMUST00000025541.5|Gnaq|ENSMUSG00000024639.5|guanine nucleotide binding protein, alpha q polypeptide
mm10_v2_chr12_+_55836365_55836408	0.0273984	AAUACUG	ENSMUST00000059250.6|Brms1l|ENSMUSG00000012076.7|breast cancer metastasis-suppressor 1-like
mm10_v2_chr4_+_11704439_11704457	0.0272248	AAUACUG	ENSMUST00000108304.2|Gem|ENSMUSG00000028214.7|GTP binding protein (gene overexpressed in skeletal muscle)
mm10_v2_chr16_+_33380765_33380787	0.0269265	AAUACUG	ENSMUST00000165418.1|Zfp148|ENSMUSG00000022811.10|zinc finger protein 148
mm10_v2_chr10_-_81427114_81427187	0.0256498	AAUACUG	ENSMUST00000078185.7|Nfic|ENSMUSG00000055053.11|nuclear factor I/C 	ENSMUST00000020461.8|Nfic|ENSMUSG00000055053.11|nuclear factor I/C 	ENSMUST00000105321.3|Nfic|ENSMUSG00000055053.11|nuclear factor I/C
mm10_v2_chr2_-_60125651_60125775	0.0254985	AAUACUG	ENSMUST00000112550.1|Baz2b|ENSMUSG00000026987.10|bromodomain adjacent to zinc finger domain, 2B
mm10_v2_chr18_-_34931993_34932007	0.0252348	AAUACUG	ENSMUST00000025218.7|Etf1|ENSMUSG00000024360.7|eukaryotic translation termination factor 1
mm10_v2_chr1_-_52233211_52233232	0.0240268	AAUACUG	ENSMUST00000114513.2|Gls|ENSMUSG00000026103.8|glutaminase 	ENSMUST00000114510.1|Gls|ENSMUSG00000026103.8|glutaminase
mm10_v2_chr16_+_32332238_32332266	0.0235114	AAUACUG	ENSMUST00000115151.3|Ubxn7|ENSMUSG00000053774.8|UBX domain protein 7
mm10_v2_chr6_+_29348069_29348123	0.021776	AAUACUG	ENSMUST00000173216.1|Calu|ENSMUSG00000029767.10|calumenin 	ENSMUST00000031779.10|Calu|ENSMUSG00000029767.10|calumenin 	ENSMUST00000090481.7|Calu|ENSMUSG00000029767.10|calumenin
mm10_v2_chr11_+_94211431_94211454	0.0215261	AAUACUG	ENSMUST00000041589.5|Tob1|ENSMUSG00000037573.5|transducer of ErbB-2.1
mm10_v2_chr2_+_127008711_127008756	0.0202913	AAUACUG	ENSMUST00000110394.1|Ap4e1|ENSMUSG00000001998.9|adaptor-related protein complex AP-4, epsilon 1 	ENSMUST00000002063.8|Ap4e1|ENSMUSG00000001998.9|adaptor-related protein complex AP-4, epsilon 1
mm10_v2_chr10_-_115315546_115315615	0.0194226	AAUACUG	ENSMUST00000020343.7|Rab21|ENSMUSG00000020132.9|RAB21, member RAS oncogene family
mm10_v2_chr8_-_109737714_109737786	0.0189115	AAUACUG	ENSMUST00000093162.3|Atxn1l|ENSMUSG00000069895.3|ataxin 1-like
mm10_v2_chr1_-_64956807_64956824	0.0178285	AAUACUG	ENSMUST00000097713.1|Plekhm3|ENSMUSG00000051344.7|pleckstrin homology domain containing, family M, member 3
mm10_v2_chr1_+_43098710_43098760	0.0160899	AAUACUG	ENSMUST00000010434.7|AI597479|ENSMUSG00000010290.7|expressed sequence AI597479
mm10_v2_chr10_-_42276744_42276763	0.0144375	AAUACUG	ENSMUST00000105502.1|Foxo3|ENSMUSG00000048756.5|forkhead box O3 	ENSMUST00000105501.1|Foxo3|ENSMUSG00000048756.5|forkhead box O3
mm10_v2_chrX_+_58030622_58030643	0.014291	AAUACUG	ENSMUST00000088627.4|Zic3|ENSMUSG00000067860.5|zinc finger protein of the cerebellum 3
mm10_v2_chr7_+_59228743_59228769	0.0135632	AAUACUG	ENSMUST00000107537.1|Ube3a|ENSMUSG00000025326.8|ubiquitin protein ligase E3A
mm10_v2_chr15_+_32920723_32920826	0.0123879	AAUACUG	ENSMUST00000022871.5|Sdc2|ENSMUSG00000022261.5|syndecan 2
mm10_v2_chr14_-_100149764_100149764	0.0109589	AAUACUG	ENSMUST00000097079.4|Klf12|ENSMUSG00000072294.4|Kruppel-like factor 12
mm10_v2_chr10_-_111010001_111010066	0.0104801	AAUACUG	ENSMUST00000099285.3|Zdhhc17|ENSMUSG00000035798.7|zinc finger, DHHC domain containing 17 	ENSMUST00000041723.7|Zdhhc17|ENSMUSG00000035798.7|zinc finger, DHHC domain containing 17
mm10_v2_chr10_-_8886033_8886076	0.0103749	AAUACUG	ENSMUST00000015449.5|Sash1|ENSMUSG00000015305.5|SAM and SH3 domain containing 1
mm10_v2_chr3_-_89279633_89279647	0.0102445	AAUACUG	ENSMUST00000118860.1|Efna1|ENSMUSG00000027954.3|ephrin A1 	ENSMUST00000029566.2|Efna1|ENSMUSG00000027954.3|ephrin A1
mm10_v2_chr4_-_41695442_41695445	0.00687739	AAUACUG	ENSMUST00000102961.3|Cntfr|ENSMUSG00000028444.11|ciliary neurotrophic factor receptor 	ENSMUST00000064443.6|Cntfr|ENSMUSG00000028444.11|ciliary neurotrophic factor receptor
mm10_v2_chr1_+_138963709_138963808	0.00438762	AAUACUG	ENSMUST00000168527.1|Dennd1b|ENSMUSG00000056268.9|DENN/MADD domain containing 1B
mm10_v2_chr19_+_41482632_41482688	0.00412099	AAUACUG	ENSMUST00000067795.5|Lcor|ENSMUSG00000025019.9|ligand dependent nuclear receptor corepressor
mm10_v2_chr13_+_49341549_49341623	0.00365445	AAUACUG	ENSMUST00000110084.2|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila) 	ENSMUST00000048544.6|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila) 	ENSMUST00000110085.3|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila)
mm10_v2_chr10_-_25200110_25200178	0.00357198	AAUACUG	ENSMUST00000100012.2|Akap7|ENSMUSG00000039166.9|A kinase (PRKA) anchor protein 7
