mm10_v2_chr5_-_122049822_122049882	0.00342786	AAUCUCU	ENSMUST00000111752.3|Cux2|ENSMUSG00000042589.12|cut-like homeobox 2
mm10_v2_chr19_-_7105729_7105729	0.00341426	AAUCUCU	ENSMUST00000113383.2|Flrt1|ENSMUSG00000047787.7|fibronectin leucine rich transmembrane protein 1
mm10_v2_chr14_-_50897456_50897507	0.00201309	AAUCUCU	ENSMUST00000170855.1|A930018M24Rik|ENSMUSG00000091089.1|RIKEN cDNA A930018M24 gene
mm10_v2_chr1_-_74935549_74935613	0.00200199	AAUCUCU	ENSMUST00000094844.3|Ccdc108|ENSMUSG00000047021.8|coiled-coil domain containing 108
mm10_v2_chr1_-_173367638_173367695	0.00197451	AAUCUCU	ENSMUST00000005470.4|Cadm3|ENSMUSG00000005338.7|cell adhesion molecule 3 	ENSMUST00000111220.1|Cadm3|ENSMUSG00000005338.7|cell adhesion molecule 3
mm10_v2_chr8_-_45382198_45382291	0.00165883	AAUCUCU	ENSMUST00000093526.6|Fam149a|ENSMUSG00000070044.9|family with sequence similarity 149, member A
mm10_v2_chr6_+_92869357_92869357	0.00158829	AAUCUCU	ENSMUST00000113434.1|Gm15737|ENSMUSG00000079462.1|predicted gene 15737
mm10_v2_chr10_+_4611971_4612021	0.00143853	AAUCUCU	ENSMUST00000105590.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha) 	ENSMUST00000067086.7|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha)
mm10_v2_chr12_+_85288591_85288712	0.00128452	AAUCUCU	ENSMUST00000059341.4|Zc2hc1c|ENSMUSG00000045064.4|zinc finger, C2HC-type containing 1C
mm10_v2_chr6_-_89362581_89362637	0.00118471	AAUCUCU	ENSMUST00000163139.1|Plxna1|ENSMUSG00000030084.5|plexin A1
mm10_v2_chr18_-_62179948_62179986	0.00110014	AAUCUCU	ENSMUST00000053640.3|Adrb2|ENSMUSG00000045730.3|adrenergic receptor, beta 2
mm10_v2_chr7_+_105404568_105404568	0.00103583	AAUCUCU	ENSMUST00000033187.4|Cnga4|ENSMUSG00000030897.4|cyclic nucleotide gated channel alpha 4
mm10_v2_chr3_+_95134088_95134088	0.000915579	AAUCUCU	ENSMUST00000066386.5|Lysmd1|ENSMUSG00000053769.5|LysM, putative peptidoglycan-binding, domain containing 1
mm10_v2_chr3_+_90341654_90341654	0.000810716	AAUCUCU	ENSMUST00000049382.4|Gatad2b|ENSMUSG00000042390.5|GATA zinc finger domain containing 2B
mm10_v2_chr14_-_49783327_49783394	0.000807447	AAUCUCU	ENSMUST00000118129.1|3632451O06Rik|ENSMUSG00000036242.8|RIKEN cDNA 3632451O06 gene 	ENSMUST00000036972.6|3632451O06Rik|ENSMUSG00000036242.8|RIKEN cDNA 3632451O06 gene
mm10_v2_chr3_+_134236483_134236500	0.000804546	AAUCUCU	ENSMUST00000181904.1|Cxxc4|ENSMUSG00000044365.10|CXXC finger 4 	ENSMUST00000053048.9|Cxxc4|ENSMUSG00000044365.10|CXXC finger 4
mm10_v2_chr8_-_87804411_87804463	0.000791249	AAUCUCU	ENSMUST00000165770.2|Zfp423|ENSMUSG00000045333.9|zinc finger protein 423
mm10_v2_chr10_+_84838143_84838153	0.000689054	AAUCUCU	ENSMUST00000095388.4|Rfx4|ENSMUSG00000020037.9|regulatory factor X, 4 (influences HLA class II expression)
mm10_v2_chr10_-_39895821_39895821	0.000638917	AAUCUCU	ENSMUST00000178045.1|AA474331|ENSMUSG00000096687.1|expressed sequence AA474331
mm10_v2_chr17_-_46831413_46831413	0.000631097	AAUCUCU	ENSMUST00000040624.5|Gltscr1l|ENSMUSG00000036568.6|GLTSCR1-like
mm10_v2_chr14_+_111675113_111675119	0.000618915	AAUCUCU	ENSMUST00000042767.7|Slitrk5|ENSMUSG00000033214.9|SLIT and NTRK-like family, member 5
mm10_v2_chr3_-_152982240_152982251	0.000576768	AAUCUCU	ENSMUST00000044278.5|St6galnac5|ENSMUSG00000039037.5|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
mm10_v2_chr9_+_3532295_3532354	0.000539327	AAUCUCU	ENSMUST00000115733.1|Gucy1a2|ENSMUSG00000041624.9|guanylate cyclase 1, soluble, alpha 2
mm10_v2_chr4_-_103215147_103215201	0.000534647	AAUCUCU	ENSMUST00000150285.1|Slc35d1|ENSMUSG00000028521.11|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
mm10_v2_chr4_-_88033328_88033373	0.000524024	AAUCUCU	ENSMUST00000078090.5|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm10_v2_chr3_-_144570136_144570227	0.000517542	AAUCUCU	ENSMUST00000043325.7|Hs2st1|ENSMUSG00000040151.8|heparan sulfate 2-O-sulfotransferase 1
mm10_v2_chr10_+_99107036_99107132	0.00051298	AAUCUCU	ENSMUST00000020113.8|Poc1b|ENSMUSG00000019952.8|POC1 centriolar protein homolog B (Chlamydomonas) 	ENSMUST00000159228.1|Poc1b|ENSMUSG00000019952.8|POC1 centriolar protein homolog B (Chlamydomonas) 	ENSMUST00000159990.1|Poc1b|ENSMUSG00000019952.8|POC1 centriolar protein homolog B (Chlamydomonas)
mm10_v2_chr14_+_49066495_49066587	0.000496349	AAUCUCU	ENSMUST00000037473.4|Ap5m1|ENSMUSG00000036291.5|adaptor-related protein complex 5, mu 1 subunit
mm10_v2_chr1_+_140246216_140246226	0.000457544	AAUCUCU	ENSMUST00000119786.1|Kcnt2|ENSMUSG00000052726.9|potassium channel, subfamily T, member 2 	ENSMUST00000120796.1|Kcnt2|ENSMUSG00000052726.9|potassium channel, subfamily T, member 2 	ENSMUST00000060201.8|Kcnt2|ENSMUSG00000052726.9|potassium channel, subfamily T, member 2 	ENSMUST00000120709.1|Kcnt2|ENSMUSG00000052726.9|potassium channel, subfamily T, member 2
mm10_v2_chr10_-_9675163_9675243	0.000443137	AAUCUCU	ENSMUST00000100070.2|Samd5|ENSMUSG00000060487.5|sterile alpha motif domain containing 5
mm10_v2_chr11_-_30954080_30954152	0.00043776	AAUCUCU	ENSMUST00000073192.7|Erlec1|ENSMUSG00000020311.11|endoplasmic reticulum lectin 1
mm10_v2_chr19_-_40402267_40402267	0.000437404	AAUCUCU	ENSMUST00000099467.3|Sorbs1|ENSMUSG00000025006.9|sorbin and SH3 domain containing 1 	ENSMUST00000099466.3|Sorbs1|ENSMUSG00000025006.9|sorbin and SH3 domain containing 1 	ENSMUST00000165212.1|Sorbs1|ENSMUSG00000025006.9|sorbin and SH3 domain containing 1 	ENSMUST00000165469.1|Sorbs1|ENSMUSG00000025006.9|sorbin and SH3 domain containing 1
mm10_v2_chr5_+_92137896_92137939	0.000425282	AAUCUCU	ENSMUST00000031355.6|Uso1|ENSMUSG00000029407.7|USO1 vesicle docking factor
mm10_v2_chr11_+_31872100_31872226	0.000420261	AAUCUCU	ENSMUST00000020543.6|Cpeb4|ENSMUSG00000020300.8|cytoplasmic polyadenylation element binding protein 4 	ENSMUST00000109412.2|Cpeb4|ENSMUSG00000020300.8|cytoplasmic polyadenylation element binding protein 4
mm10_v2_chr7_-_132599637_132599637	0.000392853	AAUCUCU	ENSMUST00000054562.3|Nkx1-2|ENSMUSG00000048528.7|NK1 transcription factor related, locus 2 (Drosophila)
mm10_v2_chr6_-_137649211_137649294	0.000360331	AAUCUCU	ENSMUST00000134630.1|Eps8|ENSMUSG00000015766.8|epidermal growth factor receptor pathway substrate 8 	ENSMUST00000058210.6|Eps8|ENSMUSG00000015766.8|epidermal growth factor receptor pathway substrate 8 	ENSMUST00000111878.1|Eps8|ENSMUSG00000015766.8|epidermal growth factor receptor pathway substrate 8
mm10_v2_chr15_+_12205009_12205040	0.000350642	AAUCUCU	ENSMUST00000038172.8|Mtmr12|ENSMUSG00000039458.8|myotubularin related protein 12
mm10_v2_chr9_-_65021645_65021717	0.000323007	AAUCUCU	ENSMUST00000036615.5|Ptplad1|ENSMUSG00000033629.5|protein tyrosine phosphatase-like A domain containing 1
mm10_v2_chr8_-_84840627_84840681	0.000319855	AAUCUCU	ENSMUST00000003911.6|Rad23a|ENSMUSG00000003813.9|RAD23a homolog (S. cerevisiae) 	ENSMUST00000109761.2|Rad23a|ENSMUSG00000003813.9|RAD23a homolog (S. cerevisiae) 	ENSMUST00000128035.1|Rad23a|ENSMUSG00000003813.9|RAD23a homolog (S. cerevisiae)
mm10_v2_chrX_-_51681703_51681703	0.000298002	AAUCUCU	ENSMUST00000088172.5|Hs6st2|ENSMUSG00000062184.5|heparan sulfate 6-O-sulfotransferase 2
mm10_v2_chr13_+_77708683_77708740	0.000290386	AAUCUCU	ENSMUST00000163257.1|Fam172a|ENSMUSG00000064138.7|family with sequence similarity 172, member A 	ENSMUST00000091459.4|Fam172a|ENSMUSG00000064138.7|family with sequence similarity 172, member A 	ENSMUST00000099358.3|Fam172a|ENSMUSG00000064138.7|family with sequence similarity 172, member A
mm10_v2_chr6_-_39206782_39206831	0.000280585	AAUCUCU	ENSMUST00000002305.8|Jhdm1d|ENSMUSG00000042599.8|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm10_v2_chr14_+_17660956_17660963	0.000256776	AAUCUCU	ENSMUST00000022303.7|Thrb|ENSMUSG00000021779.10|thyroid hormone receptor beta 	ENSMUST00000091471.4|Thrb|ENSMUSG00000021779.10|thyroid hormone receptor beta
mm10_v2_chr5_+_73491026_73491110	0.000253078	AAUCUCU	ENSMUST00000063882.5|Dcun1d4|ENSMUSG00000051674.8|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae) 	ENSMUST00000113558.1|Dcun1d4|ENSMUSG00000051674.8|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm10_v2_chr10_+_99443699_99443733	0.000240294	AAUCUCU	ENSMUST00000167243.1|Gad1-ps|ENSMUSG00000090665.1|glutamate decarboxylase 1, pseudogene
mm10_v2_chr2_-_71546745_71546758	0.000211798	AAUCUCU	ENSMUST00000024159.6|Dlx2|ENSMUSG00000023391.7|distal-less homeobox 2
mm10_v2_chr1_+_95313607_95313677	0.000203577	AAUCUCU	ENSMUST00000059975.6|Fam174a|ENSMUSG00000051185.8|family with sequence similarity 174, member A
mm10_v2_chr6_-_92943485_92943507	0.000179645	AAUCUCU	ENSMUST00000113438.1|Adamts9|ENSMUSG00000030022.8|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9
mm10_v2_chr19_+_55316313_55316367	0.000169333	AAUCUCU	ENSMUST00000095950.2|Vti1a|ENSMUSG00000024983.9|vesicle transport through interaction with t-SNAREs 1A
mm10_v2_chr10_-_14705459_14705560	0.000130667	AAUCUCU	ENSMUST00000149485.1|Vta1|ENSMUSG00000019868.10|Vps20-associated 1 homolog (S. cerevisiae) 	ENSMUST00000154132.1|Vta1|ENSMUSG00000019868.10|Vps20-associated 1 homolog (S. cerevisiae)
mm10_v2_chr10_+_102512216_102512292	0.000101059	AAUCUCU	ENSMUST00000055355.4|Rassf9|ENSMUSG00000044921.4|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9
mm10_v2_chr6_-_42597372_42597384	9.69889e-05	AAUCUCU	ENSMUST00000069023.3|Fam115e|ENSMUSG00000018656.5|family with sequence similarity 115, member E
mm10_v2_chr8_-_54529951_54530007	8.29085e-05	AAUCUCU	ENSMUST00000067476.8|Spcs3|ENSMUSG00000054408.9|signal peptidase complex subunit 3 homolog (S. cerevisiae)
mm10_v2_chrX_-_144688180_144688180	7.17762e-05	AAUCUCU	ENSMUST00000040184.3|Trpc5|ENSMUSG00000041710.4|transient receptor potential cation channel, subfamily C, member 5
mm10_v2_chr8_-_84800024_84800283	5.93577e-05	AAUCUCU	ENSMUST00000126806.1|Nfix|ENSMUSG00000001911.10|nuclear factor I/X 	ENSMUST00000076715.6|Nfix|ENSMUSG00000001911.10|nuclear factor I/X
mm10_v2_chr1_+_105780693_105780762	3.66209e-05	AAUCUCU	ENSMUST00000027559.6|Tnfrsf11a|ENSMUSG00000026321.6|tumor necrosis factor receptor superfamily, member 11a
mm10_v2_chr11_+_120232921_120232952	3.24717e-05	AAUCUCU	ENSMUST00000122148.1|Bahcc1|ENSMUSG00000039741.9|BAH domain and coiled-coil containing 1 	ENSMUST00000044985.7|Bahcc1|ENSMUSG00000039741.9|BAH domain and coiled-coil containing 1
mm10_v2_chrX_+_137049586_137049654	1.05448e-05	AAUCUCU	ENSMUST00000047852.7|Fam199x|ENSMUSG00000042595.7|family with sequence similarity 199, X-linked
mm10_v2_chr10_+_111972664_111972805	1.38832e-06	AAUCUCU	ENSMUST00000163048.1|Krr1|ENSMUSG00000063334.10|KRR1, small subunit (SSU) processome component, homolog (yeast) 	ENSMUST00000174653.1|Krr1|ENSMUSG00000063334.10|KRR1, small subunit (SSU) processome component, homolog (yeast)
