mm10_v2_chr3_-_84479418_84479491	0.164502	ACUGGCC	ENSMUST00000091002.1|Fhdc1|ENSMUSG00000041842.9|FH2 domain containing 1
mm10_v2_chr12_-_44210061_44210077	0.163356	ACUGGCC	ENSMUST00000015049.3|Dnajb9|ENSMUSG00000014905.3|DnaJ (Hsp40) homolog, subfamily B, member 9
mm10_v2_chr2_+_24367565_24367620	0.0996814	ACUGGCC	ENSMUST00000102942.1|Psd4|ENSMUSG00000026979.10|pleckstrin and Sec7 domain containing 4
mm10_v2_chr5_-_103100054_103100088	0.0699176	ACUGGCC	ENSMUST00000112848.1|Mapk10|ENSMUSG00000046709.10|mitogen-activated protein kinase 10
mm10_v2_chr10_-_128401218_128401234	0.0673398	ACUGGCC	ENSMUST00000042666.5|Slc39a5|ENSMUSG00000039878.6|solute carrier family 39 (metal ion transporter), member 5
mm10_v2_chr5_-_107289561_107289637	0.0656994	ACUGGCC	ENSMUST00000031224.8|Tgfbr3|ENSMUSG00000029287.8|transforming growth factor, beta receptor III
mm10_v2_chr9_-_43105718_43105793	0.0648021	ACUGGCC	ENSMUST00000165665.1|Arhgef12|ENSMUSG00000059495.7|Rho guanine nucleotide exchange factor (GEF) 12
mm10_v2_chr10_-_109010955_109010983	0.0507157	ACUGGCC	ENSMUST00000105276.1|Syt1|ENSMUSG00000035864.8|synaptotagmin I 	ENSMUST00000064054.7|Syt1|ENSMUSG00000035864.8|synaptotagmin I
mm10_v2_chr19_+_45363734_45363831	0.0501962	ACUGGCC	ENSMUST00000065601.5|Btrc|ENSMUSG00000025217.8|beta-transducin repeat containing protein 	ENSMUST00000111936.2|Btrc|ENSMUSG00000025217.8|beta-transducin repeat containing protein
mm10_v2_chr4_-_118291340_118291405	0.0478597	ACUGGCC	ENSMUST00000049074.6|Ptprf|ENSMUSG00000033295.7|protein tyrosine phosphatase, receptor type, F
mm10_v2_chrX_+_9885622_9885622	0.0431627	ACUGGCC	ENSMUST00000067529.2|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5 	ENSMUST00000086165.3|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5
mm10_v2_chr5_-_76304474_76304548	0.0385803	ACUGGCC	ENSMUST00000075159.1|Clock|ENSMUSG00000029238.8|circadian locomotor output cycles kaput
mm10_v2_chr11_-_98545800_98545819	0.0369334	ACUGGCC	ENSMUST00000103141.3|Ikzf3|ENSMUSG00000018168.8|IKAROS family zinc finger 3
mm10_v2_chr6_+_7844806_7844859	0.0366133	ACUGGCC	ENSMUST00000040159.4|C1galt1|ENSMUSG00000042460.4|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
mm10_v2_chr3_+_90254163_90254252	0.0359115	ACUGGCC	ENSMUST00000029545.8|Crtc2|ENSMUSG00000027936.12|CREB regulated transcription coactivator 2
mm10_v2_chr12_-_12941827_12941914	0.0344844	ACUGGCC	ENSMUST00000043396.7|Mycn|ENSMUSG00000037169.8|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)
mm10_v2_chr6_-_145250177_145250259	0.033575	ACUGGCC	ENSMUST00000111710.1|Kras|ENSMUSG00000030265.8|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog 	ENSMUST00000155145.1|Kras|ENSMUSG00000030265.8|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog 	ENSMUST00000032399.5|Kras|ENSMUSG00000030265.8|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog
mm10_v2_chr1_+_93803945_93803998	0.032969	ACUGGCC	ENSMUST00000027505.6|Ing5|ENSMUSG00000026283.7|inhibitor of growth family, member 5
mm10_v2_chr4_-_3938354_3938401	0.0328436	ACUGGCC	ENSMUST00000003369.3|Plag1|ENSMUSG00000003282.3|pleiomorphic adenoma gene 1
mm10_v2_chr12_-_79089623_79089670	0.0327246	ACUGGCC	ENSMUST00000072154.7|Pigh|ENSMUSG00000021120.10|phosphatidylinositol glycan anchor biosynthesis, class H
mm10_v2_chr5_+_75574916_75575001	0.0320833	ACUGGCC	ENSMUST00000144270.1|Kit|ENSMUSG00000005672.6|kit oncogene 	ENSMUST00000005815.6|Kit|ENSMUSG00000005672.6|kit oncogene
mm10_v2_chr12_-_86884808_86884842	0.0315722	ACUGGCC	ENSMUST00000038422.6|Irf2bpl|ENSMUSG00000034168.6|interferon regulatory factor 2 binding protein-like
mm10_v2_chr9_-_79793378_79793430	0.0308864	ACUGGCC	ENSMUST00000034878.5|Tmem30a|ENSMUSG00000032328.6|transmembrane protein 30A
mm10_v2_chr17_+_8801742_8801751	0.0305171	ACUGGCC	ENSMUST00000089085.2|Pde10a|ENSMUSG00000023868.9|phosphodiesterase 10A
mm10_v2_chr1_+_65186727_65186750	0.0297831	ACUGGCC	ENSMUST00000097707.4|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing 	ENSMUST00000081154.7|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing
mm10_v2_chr2_+_121955964_121956001	0.0281906	ACUGGCC	ENSMUST00000036647.6|Ctdspl2|ENSMUSG00000033411.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm10_v2_chr1_-_186705980_186705999	0.0268286	ACUGGCC	ENSMUST00000045288.8|Tgfb2|ENSMUSG00000039239.9|transforming growth factor, beta 2
mm10_v2_chr2_+_109917639_109917656	0.0243186	ACUGGCC	ENSMUST00000046548.7|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4 	ENSMUST00000111037.2|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4
mm10_v2_chr18_-_46280820_46280850	0.02408	ACUGGCC	ENSMUST00000025354.3|Pggt1b|ENSMUSG00000024477.3|protein geranylgeranyltransferase type I, beta subunit
mm10_v2_chr5_-_139325616_139325627	0.0226296	ACUGGCC	ENSMUST00000110865.1|Adap1|ENSMUSG00000056413.10|ArfGAP with dual PH domains 1
mm10_v2_chr12_-_15816762_15816881	0.0218939	ACUGGCC	ENSMUST00000020922.7|Trib2|ENSMUSG00000020601.7|tribbles homolog 2 (Drosophila)
mm10_v2_chr1_+_167001417_167001431	0.0209027	ACUGGCC	ENSMUST00000165874.1|Fam78b|ENSMUSG00000060568.8|family with sequence similarity 78, member B
mm10_v2_chr19_+_8819401_8819401	0.0206853	ACUGGCC	ENSMUST00000096753.3|Hnrnpul2|ENSMUSG00000071659.3|heterogeneous nuclear ribonucleoprotein U-like 2
mm10_v2_chr15_-_79932516_79932665	0.0200046	ACUGGCC	ENSMUST00000177044.1|Cbx7|ENSMUSG00000053411.10|chromobox 7 	ENSMUST00000109615.1|Cbx7|ENSMUSG00000053411.10|chromobox 7 	ENSMUST00000089293.4|Cbx7|ENSMUSG00000053411.10|chromobox 7 	ENSMUST00000109616.2|Cbx7|ENSMUSG00000053411.10|chromobox 7
mm10_v2_chr4_-_53159885_53159900	0.0194943	ACUGGCC	ENSMUST00000030010.3|Abca1|ENSMUSG00000015243.4|ATP-binding cassette, sub-family A (ABC1), member 1
mm10_v2_chr11_+_60537978_60538074	0.0188845	ACUGGCC	ENSMUST00000044250.3|Alkbh5|ENSMUSG00000042650.3|alkB, alkylation repair homolog 5 (E. coli)
mm10_v2_chr12_+_16810940_16810978	0.0183668	ACUGGCC	ENSMUST00000020908.7|E2f6|ENSMUSG00000057469.7|E2F transcription factor 6
mm10_v2_chr14_+_48446340_48446429	0.0183237	ACUGGCC	ENSMUST00000111735.2|Tmem260|ENSMUSG00000036339.11|transmembrane protein 260
mm10_v2_chr17_+_26715644_26715724	0.016593	ACUGGCC	ENSMUST00000062519.7|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor 	ENSMUST00000144221.1|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor 	ENSMUST00000142539.1|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor 	ENSMUST00000151681.1|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor
mm10_v2_chr8_-_86745950_86746054	0.0154295	ACUGGCC	ENSMUST00000045296.4|Siah1a|ENSMUSG00000036840.4|seven in absentia 1A
mm10_v2_chr6_-_149101674_149101686	0.014943	ACUGGCC	ENSMUST00000111557.1|Dennd5b|ENSMUSG00000030313.9|DENN/MADD domain containing 5B
mm10_v2_chr10_+_93160824_93160894	0.0148021	ACUGGCC	ENSMUST00000069965.7|Cdk17|ENSMUSG00000020015.9|cyclin-dependent kinase 17
mm10_v2_chr8_-_90908415_90908415	0.0145772	ACUGGCC	ENSMUST00000098517.1|Gm6658|ENSMUSG00000074171.1|predicted gene 6658
mm10_v2_chr6_+_115931922_115931937	0.0144204	ACUGGCC	ENSMUST00000032471.6|Rho|ENSMUSG00000030324.6|rhodopsin
mm10_v2_chr9_+_68653761_68653786	0.0130117	ACUGGCC	ENSMUST00000034766.7|Rora|ENSMUSG00000032238.11|RAR-related orphan receptor alpha
mm10_v2_chr4_+_15881255_15881272	0.0128361	ACUGGCC	ENSMUST00000029876.1|Calb1|ENSMUSG00000028222.2|calbindin 1
mm10_v2_chr9_+_123366921_123366953	0.0124987	ACUGGCC	ENSMUST00000038863.7|Lars2|ENSMUSG00000035202.7|leucyl-tRNA synthetase, mitochondrial
mm10_v2_chr12_+_110485710_110485755	0.0102274	ACUGGCC	ENSMUST00000084985.3|Ppp2r5c|ENSMUSG00000017843.7|protein phosphatase 2, regulatory subunit B (B56), gamma isoform 	ENSMUST00000109832.1|Ppp2r5c|ENSMUSG00000017843.7|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm10_v2_chr10_+_128790903_128790968	0.00988176	ACUGGCC	ENSMUST00000026411.6|Mmp19|ENSMUSG00000025355.6|matrix metallopeptidase 19
mm10_v2_chr11_+_107547925_107547968	0.00829004	ACUGGCC	ENSMUST00000100305.1|Helz|ENSMUSG00000020721.10|helicase with zinc finger domain 	ENSMUST00000075012.1|Helz|ENSMUSG00000020721.10|helicase with zinc finger domain 	ENSMUST00000106746.1|Helz|ENSMUSG00000020721.10|helicase with zinc finger domain
mm10_v2_chr2_-_153241402_153241426	0.00822534	ACUGGCC	ENSMUST00000056924.7|Plagl2|ENSMUSG00000051413.11|pleiomorphic adenoma gene-like 2
mm10_v2_chr3_-_94582716_94582741	0.00791079	ACUGGCC	ENSMUST00000029783.9|Snx27|ENSMUSG00000028136.9|sorting nexin family member 27
mm10_v2_chr16_+_20535475_20535546	0.00732461	ACUGGCC	ENSMUST00000090023.6|Ap2m1|ENSMUSG00000022841.8|adaptor-related protein complex 2, mu 1 subunit 	ENSMUST00000007216.8|Ap2m1|ENSMUSG00000022841.8|adaptor-related protein complex 2, mu 1 subunit
mm10_v2_chr10_+_123264076_123264125	0.0058803	ACUGGCC	ENSMUST00000050756.7|Fam19a2|ENSMUSG00000044071.7|family with sequence similarity 19, member A2
mm10_v2_chr2_+_162931520_162931536	0.00544212	ACUGGCC	ENSMUST00000130411.1|Srsf6|ENSMUSG00000016921.8|serine/arginine-rich splicing factor 6
mm10_v2_chr9_+_106170918_106170953	0.00454954	ACUGGCC	ENSMUST00000020490.5|Wdr82|ENSMUSG00000020257.6|WD repeat domain containing 82
mm10_v2_chrX_-_12762069_12762080	0.00444491	ACUGGCC	ENSMUST00000096495.4|Med14|ENSMUSG00000064127.7|mediator complex subunit 14 	ENSMUST00000076016.5|Med14|ENSMUSG00000064127.7|mediator complex subunit 14
mm10_v2_chr2_-_60963192_60963251	0.00439887	ACUGGCC	ENSMUST00000028347.6|Rbms1|ENSMUSG00000026970.10|RNA binding motif, single stranded interacting protein 1
mm10_v2_chr18_-_88894322_88894371	0.00414076	ACUGGCC	ENSMUST00000070116.5|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6 	ENSMUST00000125362.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr11_-_87987528_87987537	0.00401357	ACUGGCC	ENSMUST00000020775.2|Dynll2|ENSMUSG00000020483.8|dynein light chain LC8-type 2
mm10_v2_chr2_-_160872552_160872622	0.00340309	ACUGGCC	ENSMUST00000103111.2|Zhx3|ENSMUSG00000035877.11|zinc fingers and homeoboxes 3
mm10_v2_chr3_-_153725062_153725179	0.00335415	ACUGGCC	ENSMUST00000064460.5|St6galnac3|ENSMUSG00000052544.5|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
mm10_v2_chr18_+_38250240_38250287	0.00335081	ACUGGCC	ENSMUST00000025314.5|0610009O20Rik|ENSMUSG00000024442.5|RIKEN cDNA 0610009O20 gene
mm10_v2_chr12_+_98628126_98628202	0.00220648	ACUGGCC	ENSMUST00000048402.5|Spata7|ENSMUSG00000021007.7|spermatogenesis associated 7 	ENSMUST00000101144.3|Spata7|ENSMUSG00000021007.7|spermatogenesis associated 7 	ENSMUST00000101146.3|Spata7|ENSMUSG00000021007.7|spermatogenesis associated 7
mm10_v2_chr13_+_49341549_49341623	0.00205588	ACUGGCC	ENSMUST00000110084.2|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila) 	ENSMUST00000048544.6|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila) 	ENSMUST00000110085.3|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila)
mm10_v2_chr7_+_97579868_97579901	0.00145593	ACUGGCC	ENSMUST00000042399.7|Rsf1|ENSMUSG00000035623.8|remodeling and spacing factor 1 	ENSMUST00000107153.1|Rsf1|ENSMUSG00000035623.8|remodeling and spacing factor 1
mm10_v2_chr5_-_51553896_51553921	0.0013472	ACUGGCC	ENSMUST00000132734.1|Ppargc1a|ENSMUSG00000029167.7|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm10_v2_chr1_+_43098710_43098760	0.00122986	ACUGGCC	ENSMUST00000010434.7|AI597479|ENSMUSG00000010290.7|expressed sequence AI597479
mm10_v2_chr3_+_38886940_38886940	0.00100328	ACUGGCC	ENSMUST00000061260.7|Fat4|ENSMUSG00000046743.6|FAT tumor suppressor homolog 4 (Drosophila)
mm10_v2_chr12_+_100199435_100199538	0.000553023	ACUGGCC	ENSMUST00000110082.3|Calm1|ENSMUSG00000001175.7|calmodulin 1
