mm10_v2_chr11_-_119086221_119086250	0.224067	AGCUUAU	ENSMUST00000026665.7|Cbx4|ENSMUSG00000039989.7|chromobox 4
mm10_v2_chr13_+_56609516_56609606	0.221615	AGCUUAU	ENSMUST00000045173.8|Tgfbi|ENSMUSG00000035493.9|transforming growth factor, beta induced
mm10_v2_chr17_+_24488773_24488799	0.180717	AGCUUAU	ENSMUST00000024958.7|Caskin1|ENSMUSG00000033597.8|CASK interacting protein 1
mm10_v2_chr5_+_102481374_102481391	0.172717	AGCUUAU	ENSMUST00000094559.2|Arhgap24|ENSMUSG00000057315.8|Rho GTPase activating protein 24 	ENSMUST00000073302.5|Arhgap24|ENSMUSG00000057315.8|Rho GTPase activating protein 24
mm10_v2_chr3_+_138065052_138065078	0.142532	AGCUUAU	ENSMUST00000163080.2|1110002E22Rik|ENSMUSG00000090066.2|RIKEN cDNA 1110002E22 gene
mm10_v2_chr6_-_129507107_129507171	0.140992	AGCUUAU	ENSMUST00000183258.1|Olr1|ENSMUSG00000030162.8|oxidized low density lipoprotein (lectin-like) receptor 1 	ENSMUST00000182784.1|Olr1|ENSMUSG00000030162.8|oxidized low density lipoprotein (lectin-like) receptor 1 	ENSMUST00000032265.6|Olr1|ENSMUSG00000030162.8|oxidized low density lipoprotein (lectin-like) receptor 1 	ENSMUST00000162815.1|Olr1|ENSMUSG00000030162.8|oxidized low density lipoprotein (lectin-like) receptor 1
mm10_v2_chr5_+_13399309_13399382	0.131186	AGCUUAU	ENSMUST00000030714.7|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 	ENSMUST00000141968.1|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm10_v2_chr2_+_113327711_113327753	0.130587	AGCUUAU	ENSMUST00000099576.2|Fmn1|ENSMUSG00000044042.12|formin 1
mm10_v2_chr8_-_111876661_111876725	0.119454	AGCUUAU	ENSMUST00000034431.1|Tmem170|ENSMUSG00000031953.1|transmembrane protein 170
mm10_v2_chr4_+_43875524_43875558	0.104664	AGCUUAU	ENSMUST00000030198.6|Reck|ENSMUSG00000028476.7|reversion-inducing-cysteine-rich protein with kazal motifs
mm10_v2_chr14_-_105896819_105896819	0.102829	AGCUUAU	ENSMUST00000022709.4|Spry2|ENSMUSG00000022114.4|sprouty homolog 2 (Drosophila)
mm10_v2_chr17_+_25188380_25188418	0.101736	AGCUUAU	ENSMUST00000039734.5|Unkl|ENSMUSG00000015127.8|unkempt-like (Drosophila)
mm10_v2_chrX_+_103356464_103356488	0.100974	AGCUUAU	ENSMUST00000116547.2|Chic1|ENSMUSG00000031327.10|cysteine-rich hydrophobic domain 1
mm10_v2_chr9_-_8004585_8004623	0.100268	AGCUUAU	ENSMUST00000086580.5|Yap1|ENSMUSG00000053110.7|yes-associated protein 1 	ENSMUST00000065353.6|Yap1|ENSMUSG00000053110.7|yes-associated protein 1
mm10_v2_chr7_+_130865756_130865812	0.0986368	AGCUUAU	ENSMUST00000120441.1|Plekha1|ENSMUSG00000040268.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
mm10_v2_chr2_+_79635352_79635410	0.0919775	AGCUUAU	ENSMUST00000111785.2|Ssfa2|ENSMUSG00000027007.10|sperm specific antigen 2
mm10_v2_chr18_+_56432116_56432163	0.0910948	AGCUUAU	ENSMUST00000070166.5|Gramd3|ENSMUSG00000001700.9|GRAM domain containing 3
mm10_v2_chr2_+_48814109_48814173	0.0831086	AGCUUAU	ENSMUST00000063886.3|Acvr2a|ENSMUSG00000052155.5|activin receptor IIA
mm10_v2_chr5_+_64803513_64803530	0.0818493	AGCUUAU	ENSMUST00000165536.1|Klf3|ENSMUSG00000029178.8|Kruppel-like factor 3 (basic)
mm10_v2_chrX_+_160390684_160390730	0.0780347	AGCUUAU	ENSMUST00000112408.2|Gpr64|ENSMUSG00000031298.9|G protein-coupled receptor 64 	ENSMUST00000112402.1|Gpr64|ENSMUSG00000031298.9|G protein-coupled receptor 64 	ENSMUST00000112401.1|Gpr64|ENSMUSG00000031298.9|G protein-coupled receptor 64 	ENSMUST00000112400.1|Gpr64|ENSMUSG00000031298.9|G protein-coupled receptor 64 	ENSMUST00000112405.2|Gpr64|ENSMUSG00000031298.9|G protein-coupled receptor 64 	ENSMUST00000112404.2|Gpr64|ENSMUSG00000031298.9|G protein-coupled receptor 64 	ENSMUST00000146805.1|Gpr64|ENSMUSG00000031298.9|G protein-coupled receptor 64
mm10_v2_chr12_+_52516077_52516077	0.0739842	AGCUUAU	ENSMUST00000110725.1|Arhgap5|ENSMUSG00000035133.8|Rho GTPase activating protein 5
mm10_v2_chr13_-_101768154_101768217	0.073822	AGCUUAU	ENSMUST00000055518.6|Pik3r1|ENSMUSG00000041417.9|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm10_v2_chr4_-_155222535_155222592	0.0731837	AGCUUAU	ENSMUST00000084103.3|Ski|ENSMUSG00000029050.9|ski sarcoma viral oncogene homolog (avian) 	ENSMUST00000030917.5|Ski|ENSMUSG00000029050.9|ski sarcoma viral oncogene homolog (avian)
mm10_v2_chrX_+_42149288_42149412	0.0727879	AGCUUAU	ENSMUST00000115073.2|Stag2|ENSMUSG00000025862.8|stromal antigen 2 	ENSMUST00000115072.1|Stag2|ENSMUSG00000025862.8|stromal antigen 2
mm10_v2_chr2_+_113441064_113441079	0.0721741	AGCUUAU	ENSMUST00000081349.6|Fmn1|ENSMUSG00000044042.12|formin 1
mm10_v2_chr2_-_58357752_58357895	0.0717698	AGCUUAU	ENSMUST00000112608.2|Acvr1c|ENSMUSG00000026834.7|activin A receptor, type IC 	ENSMUST00000112607.2|Acvr1c|ENSMUSG00000026834.7|activin A receptor, type IC 	ENSMUST00000028178.7|Acvr1c|ENSMUSG00000026834.7|activin A receptor, type IC
mm10_v2_chr18_+_75367529_75367561	0.069643	AGCUUAU	ENSMUST00000026999.3|Smad7|ENSMUSG00000025880.5|SMAD family member 7
mm10_v2_chr2_-_104494400_104494463	0.0683404	AGCUUAU	ENSMUST00000028600.7|Hipk3|ENSMUSG00000027177.8|homeodomain interacting protein kinase 3
mm10_v2_chr17_-_63499983_63500075	0.0680783	AGCUUAU	ENSMUST00000024761.6|Fbxl17|ENSMUSG00000023965.7|F-box and leucine-rich repeat protein 17
mm10_v2_chr2_+_24367565_24367620	0.0651835	AGCUUAU	ENSMUST00000102942.1|Psd4|ENSMUSG00000026979.10|pleckstrin and Sec7 domain containing 4
mm10_v2_chr6_-_14755250_14755286	0.0620933	AGCUUAU	ENSMUST00000045096.4|Ppp1r3a|ENSMUSG00000042717.4|protein phosphatase 1, regulatory (inhibitor) subunit 3A
mm10_v2_chr4_+_100095791_100095867	0.0598068	AGCUUAU	ENSMUST00000039630.5|Ror1|ENSMUSG00000035305.5|receptor tyrosine kinase-like orphan receptor 1
mm10_v2_chr5_+_16553488_16553550	0.0597276	AGCUUAU	ENSMUST00000030683.3|Hgf|ENSMUSG00000028864.3|hepatocyte growth factor
mm10_v2_chr11_-_30025915_30026033	0.0581589	AGCUUAU	ENSMUST00000058902.5|Eml6|ENSMUSG00000044072.8|echinoderm microtubule associated protein like 6
mm10_v2_chr9_-_96631487_96631617	0.0571501	AGCUUAU	ENSMUST00000128346.1|Rasa2|ENSMUSG00000032413.6|RAS p21 protein activator 2 	ENSMUST00000034984.6|Rasa2|ENSMUSG00000032413.6|RAS p21 protein activator 2
mm10_v2_chr9_-_43105718_43105793	0.0563582	AGCUUAU	ENSMUST00000165665.1|Arhgef12|ENSMUSG00000059495.7|Rho guanine nucleotide exchange factor (GEF) 12
mm10_v2_chr10_+_53596936_53597004	0.0555422	AGCUUAU	ENSMUST00000020004.6|Asf1a|ENSMUSG00000019857.6|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)
mm10_v2_chr4_-_19708922_19709004	0.0552554	AGCUUAU	ENSMUST00000108246.2|Wwp1|ENSMUSG00000041058.9|WW domain containing E3 ubiquitin protein ligase 1
mm10_v2_chr2_+_65845767_65845799	0.0528849	AGCUUAU	ENSMUST00000122912.1|Csrnp3|ENSMUSG00000044647.10|cysteine-serine-rich nuclear protein 3
mm10_v2_chr5_-_92348871_92348889	0.0507547	AGCUUAU	ENSMUST00000038816.6|Cxcl10|ENSMUSG00000034855.7|chemokine (C-X-C motif) ligand 10 	ENSMUST00000118006.1|Cxcl10|ENSMUSG00000034855.7|chemokine (C-X-C motif) ligand 10
mm10_v2_chr8_-_72305276_72305276	0.0499147	AGCUUAU	ENSMUST00000075602.6|Gm10282|ENSMUSG00000070713.4|predicted pseudogene 10282
mm10_v2_chr4_-_123750236_123750345	0.0495861	AGCUUAU	ENSMUST00000102636.3|Akirin1|ENSMUSG00000023075.9|akirin 1
mm10_v2_chr13_-_111808938_111809018	0.0488106	AGCUUAU	ENSMUST00000109267.2|Map3k1|ENSMUSG00000021754.11|mitogen-activated protein kinase kinase kinase 1
mm10_v2_chr2_-_148408146_148408188	0.0482813	AGCUUAU	ENSMUST00000099270.3|Thbd|ENSMUSG00000074743.3|thrombomodulin
mm10_v2_chr10_+_86300372_86300372	0.04828	AGCUUAU	ENSMUST00000020234.7|Timp3|ENSMUSG00000020044.7|tissue inhibitor of metalloproteinase 3
mm10_v2_chr6_-_126166726_126166761	0.0480855	AGCUUAU	ENSMUST00000112244.2|Ntf3|ENSMUSG00000049107.7|neurotrophin 3 	ENSMUST00000050484.7|Ntf3|ENSMUSG00000049107.7|neurotrophin 3
mm10_v2_chr5_-_103100054_103100088	0.0477077	AGCUUAU	ENSMUST00000112848.1|Mapk10|ENSMUSG00000046709.10|mitogen-activated protein kinase 10
mm10_v2_chr6_+_134830145_134830179	0.0474384	AGCUUAU	ENSMUST00000046303.5|Crebl2|ENSMUSG00000032652.7|cAMP responsive element binding protein-like 2
mm10_v2_chr5_-_4104654_4104792	0.0466341	AGCUUAU	ENSMUST00000001507.4|Cyp51|ENSMUSG00000001467.4|cytochrome P450, family 51
mm10_v2_chr13_-_107890059_107890073	0.04602	AGCUUAU	ENSMUST00000105097.2|Zswim6|ENSMUSG00000032846.9|zinc finger SWIM-type containing 6
mm10_v2_chr14_+_79426454_79426511	0.0458179	AGCUUAU	ENSMUST00000061222.7|Kbtbd7|ENSMUSG00000043881.8|kelch repeat and BTB (POZ) domain containing 7
mm10_v2_chr17_-_51832666_51832678	0.0448643	AGCUUAU	ENSMUST00000144331.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr19_+_6276725_6276792	0.044035	AGCUUAU	ENSMUST00000025684.3|Ehd1|ENSMUSG00000024772.9|EH-domain containing 1
mm10_v2_chr9_-_70657121_70657188	0.0437339	AGCUUAU	ENSMUST00000049031.5|Fam63b|ENSMUSG00000042444.9|family with sequence similarity 63, member B
mm10_v2_chr11_-_6475992_6476102	0.0434793	AGCUUAU	ENSMUST00000179343.1|Purb|ENSMUSG00000094483.1|purine rich element binding protein B
mm10_v2_chr3_+_60501252_60501275	0.0431705	AGCUUAU	ENSMUST00000099087.2|Mbnl1|ENSMUSG00000027763.8|muscleblind-like 1 (Drosophila)
mm10_v2_chr7_-_119895697_119895752	0.0414762	AGCUUAU	ENSMUST00000059851.6|Dcun1d3|ENSMUSG00000048787.6|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm10_v2_chr6_+_66896397_66896479	0.0408146	AGCUUAU	ENSMUST00000043148.6|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114228.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114227.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114226.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114225.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114224.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12
mm10_v2_chr5_+_3803160_3803193	0.039481	AGCUUAU	ENSMUST00000171023.1|Krit1|ENSMUSG00000000600.9|KRIT1, ankyrin repeat containing 	ENSMUST00000080085.4|Krit1|ENSMUSG00000000600.9|KRIT1, ankyrin repeat containing
mm10_v2_chr4_-_3938354_3938401	0.0385676	AGCUUAU	ENSMUST00000003369.3|Plag1|ENSMUSG00000003282.3|pleiomorphic adenoma gene 1
mm10_v2_chr2_-_102901346_102901665	0.0383221	AGCUUAU	ENSMUST00000111192.2|Cd44|ENSMUSG00000005087.11|CD44 antigen 	ENSMUST00000111190.2|Cd44|ENSMUSG00000005087.11|CD44 antigen 	ENSMUST00000111198.2|Cd44|ENSMUSG00000005087.11|CD44 antigen 	ENSMUST00000111191.2|Cd44|ENSMUSG00000005087.11|CD44 antigen 	ENSMUST00000060516.7|Cd44|ENSMUSG00000005087.11|CD44 antigen 	ENSMUST00000099673.2|Cd44|ENSMUSG00000005087.11|CD44 antigen 	ENSMUST00000005218.8|Cd44|ENSMUSG00000005087.11|CD44 antigen 	ENSMUST00000111194.1|Cd44|ENSMUSG00000005087.11|CD44 antigen
mm10_v2_chr12_+_53248677_53248677	0.037872	AGCUUAU	ENSMUST00000101432.2|Npas3|ENSMUSG00000021010.7|neuronal PAS domain protein 3
mm10_v2_chr16_-_46496955_46496986	0.0377007	AGCUUAU	ENSMUST00000023335.6|Pvrl3|ENSMUSG00000022656.9|poliovirus receptor-related 3 	ENSMUST00000023334.8|Pvrl3|ENSMUSG00000022656.9|poliovirus receptor-related 3
mm10_v2_chr13_+_64432479_64432557	0.0376784	AGCUUAU	ENSMUST00000021939.6|Cdk20|ENSMUSG00000021483.7|cyclin-dependent kinase 20
mm10_v2_chr3_-_131344892_131344940	0.037454	AGCUUAU	ENSMUST00000090246.4|Sgms2|ENSMUSG00000050931.6|sphingomyelin synthase 2 	ENSMUST00000126569.1|Sgms2|ENSMUSG00000050931.6|sphingomyelin synthase 2
mm10_v2_chr18_+_35771488_35771559	0.0360913	AGCUUAU	ENSMUST00000170693.1|Ube2d2a|ENSMUSG00000091896.1|ubiquitin-conjugating enzyme E2D 2A
mm10_v2_chr15_+_102470632_102470716	0.0356367	AGCUUAU	ENSMUST00000077037.5|Pcbp2|ENSMUSG00000056851.7|poly(rC) binding protein 2 	ENSMUST00000078404.7|Pcbp2|ENSMUSG00000056851.7|poly(rC) binding protein 2 	ENSMUST00000108838.3|Pcbp2|ENSMUSG00000056851.7|poly(rC) binding protein 2
mm10_v2_chr3_+_103914560_103914605	0.0353284	AGCUUAU	ENSMUST00000106806.1|Rsbn1|ENSMUSG00000044098.8|rosbin, round spermatid basic protein 1
mm10_v2_chr11_-_89418948_89418948	0.0343582	AGCUUAU	ENSMUST00000050983.1|4932411E22Rik|ENSMUSG00000047490.1|RIKEN cDNA 4932411E22 gene
mm10_v2_chr10_-_19015347_19015410	0.0340496	AGCUUAU	ENSMUST00000019997.4|Tnfaip3|ENSMUSG00000019850.5|tumor necrosis factor, alpha-induced protein 3
mm10_v2_chr2_+_109917639_109917656	0.0334843	AGCUUAU	ENSMUST00000046548.7|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4 	ENSMUST00000111037.2|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4
mm10_v2_chr14_-_39472825_39473088	0.0332798	AGCUUAU	ENSMUST00000168810.2|Nrg3|ENSMUSG00000041014.11|neuregulin 3 	ENSMUST00000173780.1|Nrg3|ENSMUSG00000041014.11|neuregulin 3 	ENSMUST00000166968.2|Nrg3|ENSMUSG00000041014.11|neuregulin 3
mm10_v2_chr15_+_85735754_85735808	0.0329712	AGCUUAU	ENSMUST00000109422.1|Ppara|ENSMUSG00000022383.7|peroxisome proliferator activated receptor alpha
mm10_v2_chr2_-_131352857_131352889	0.0328699	AGCUUAU	ENSMUST00000059372.4|Rnf24|ENSMUSG00000048911.9|ring finger protein 24
mm10_v2_chr4_-_70534904_70534987	0.0326497	AGCUUAU	ENSMUST00000107359.2|Megf9|ENSMUSG00000039270.3|multiple EGF-like-domains 9
mm10_v2_chr15_-_43170809_43170834	0.0319689	AGCUUAU	ENSMUST00000063492.6|Rspo2|ENSMUSG00000051920.6|R-spondin 2 homolog (Xenopus laevis)
mm10_v2_chr3_+_135438722_135438780	0.031366	AGCUUAU	ENSMUST00000166033.1|Ube2d3|ENSMUSG00000078578.3|ubiquitin-conjugating enzyme E2D 3
mm10_v2_chr3_-_41082992_41083046	0.0301304	AGCUUAU	ENSMUST00000058578.7|Pgrmc2|ENSMUSG00000049940.7|progesterone receptor membrane component 2
mm10_v2_chr13_+_5861489_5861501	0.0297731	AGCUUAU	ENSMUST00000000080.6|Klf6|ENSMUSG00000000078.6|Kruppel-like factor 6
mm10_v2_chr14_-_21052420_21052450	0.0292908	AGCUUAU	ENSMUST00000154460.1|Ap3m1|ENSMUSG00000021824.6|adaptor-related protein complex 3, mu 1 subunit
mm10_v2_chr10_-_103029043_103029054	0.0292067	AGCUUAU	ENSMUST00000167156.2|Alx1|ENSMUSG00000036602.7|ALX homeobox 1
mm10_v2_chr9_-_117252450_117252489	0.0283152	AGCUUAU	ENSMUST00000111773.3|Rbms3|ENSMUSG00000039607.9|RNA binding motif, single stranded interacting protein 	ENSMUST00000068962.7|Rbms3|ENSMUSG00000039607.9|RNA binding motif, single stranded interacting protein 	ENSMUST00000044901.7|Rbms3|ENSMUSG00000039607.9|RNA binding motif, single stranded interacting protein
mm10_v2_chr5_-_112577186_112577204	0.0279289	AGCUUAU	ENSMUST00000079491.7|Sez6l|ENSMUSG00000058153.8|seizure related 6 homolog like 	ENSMUST00000075387.6|Sez6l|ENSMUSG00000058153.8|seizure related 6 homolog like
mm10_v2_chr10_+_42761483_42761496	0.0275297	AGCUUAU	ENSMUST00000019937.4|Sec63|ENSMUSG00000019802.7|SEC63-like (S. cerevisiae)
mm10_v2_chr17_-_84187939_84187954	0.0267419	AGCUUAU	ENSMUST00000060366.6|Zfp36l2|ENSMUSG00000045817.8|zinc finger protein 36, C3H type-like 2
mm10_v2_chr4_-_82505749_82505802	0.0253789	AGCUUAU	ENSMUST00000107245.2|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000107246.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr6_-_83831736_83831750	0.0252263	AGCUUAU	ENSMUST00000058383.8|Paip2b|ENSMUSG00000045896.8|poly(A) binding protein interacting protein 2B
mm10_v2_chr5_-_37824580_37824584	0.0245764	AGCUUAU	ENSMUST00000063116.9|Msx1|ENSMUSG00000048450.10|msh homeobox 1
mm10_v2_chr6_+_71493850_71493918	0.0241631	AGCUUAU	ENSMUST00000064637.4|Rnf103|ENSMUSG00000052656.6|ring finger protein 103 	ENSMUST00000114178.1|Rnf103|ENSMUSG00000052656.6|ring finger protein 103
mm10_v2_chr3_+_129199919_129199943	0.0228552	AGCUUAU	ENSMUST00000029657.9|Pitx2|ENSMUSG00000028023.10|paired-like homeodomain transcription factor 2 	ENSMUST00000106382.4|Pitx2|ENSMUSG00000028023.10|paired-like homeodomain transcription factor 2
mm10_v2_chr12_+_9574437_9574448	0.0220029	AGCUUAU	ENSMUST00000057021.7|Osr1|ENSMUSG00000048387.7|odd-skipped related 1 (Drosophila)
mm10_v2_chr18_+_36281069_36281151	0.0218658	AGCUUAU	ENSMUST00000051301.3|Pura|ENSMUSG00000043991.3|purine rich element binding protein A
mm10_v2_chr16_-_67620880_67620922	0.0205457	AGCUUAU	ENSMUST00000114292.1|Cadm2|ENSMUSG00000064115.7|cell adhesion molecule 2 	ENSMUST00000120898.1|Cadm2|ENSMUSG00000064115.7|cell adhesion molecule 2
mm10_v2_chr4_-_133967893_133967951	0.020353	AGCUUAU	ENSMUST00000100472.3|Hmgn2|ENSMUSG00000003038.9|high mobility group nucleosomal binding domain 2 	ENSMUST00000136327.1|Hmgn2|ENSMUSG00000003038.9|high mobility group nucleosomal binding domain 2
mm10_v2_chr17_+_26715644_26715724	0.01937	AGCUUAU	ENSMUST00000062519.7|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor 	ENSMUST00000144221.1|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor 	ENSMUST00000142539.1|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor 	ENSMUST00000151681.1|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor
mm10_v2_chr3_-_37232565_37232637	0.0188052	AGCUUAU	ENSMUST00000161015.1|Il21|ENSMUSG00000027718.2|interleukin 21 	ENSMUST00000029273.1|Il21|ENSMUSG00000027718.2|interleukin 21
mm10_v2_chr19_-_29805989_29806009	0.0186076	AGCUUAU	ENSMUST00000177155.1|9930021J03Rik|ENSMUSG00000046138.8|RIKEN cDNA 9930021J03 gene 	ENSMUST00000059484.7|9930021J03Rik|ENSMUSG00000046138.8|RIKEN cDNA 9930021J03 gene
mm10_v2_chrX_+_159255782_159255899	0.0181369	AGCUUAU	ENSMUST00000126686.1|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3 	ENSMUST00000033671.6|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3
mm10_v2_chr3_+_137867675_137867797	0.0180096	AGCUUAU	ENSMUST00000090178.5|Dnajb14|ENSMUSG00000074212.3|DnaJ (Hsp40) homolog, subfamily B, member 14
mm10_v2_chr6_-_126645784_126645801	0.0166055	AGCUUAU	ENSMUST00000055168.3|Kcna1|ENSMUSG00000047976.3|potassium voltage-gated channel, shaker-related subfamily, member 1
mm10_v2_chr13_-_85288999_85289058	0.0161912	AGCUUAU	ENSMUST00000109552.2|Rasa1|ENSMUSG00000021549.7|RAS p21 protein activator 1
mm10_v2_chr17_-_64331817_64331957	0.0158089	AGCUUAU	ENSMUST00000172733.1|Pja2|ENSMUSG00000024083.9|praja 2, RING-H2 motif containing 	ENSMUST00000172818.1|Pja2|ENSMUSG00000024083.9|praja 2, RING-H2 motif containing
mm10_v2_chr2_-_120609283_120609317	0.0155752	AGCUUAU	ENSMUST00000102496.1|Lrrc57|ENSMUSG00000027286.10|leucine rich repeat containing 57
mm10_v2_chr2_+_173659760_173659816	0.0140732	AGCUUAU	ENSMUST00000029024.3|Rab22a|ENSMUSG00000027519.4|RAB22A, member RAS oncogene family
mm10_v2_chr1_-_91459254_91459336	0.0131943	AGCUUAU	ENSMUST00000069620.8|Per2|ENSMUSG00000055866.8|period circadian clock 2
mm10_v2_chr11_-_100939357_100939456	0.0130922	AGCUUAU	ENSMUST00000092671.5|Stat3|ENSMUSG00000004040.10|signal transducer and activator of transcription 3 	ENSMUST00000103114.1|Stat3|ENSMUSG00000004040.10|signal transducer and activator of transcription 3
mm10_v2_chr1_+_74506044_74506105	0.0122729	AGCUUAU	ENSMUST00000087215.5|Rqcd1|ENSMUSG00000026174.8|rcd1 (required for cell differentiation) homolog 1 (S. pombe)
mm10_v2_chr9_-_52679429_52679429	0.0117935	AGCUUAU	ENSMUST00000098768.2|AI593442|ENSMUSG00000078307.2|expressed sequence AI593442
mm10_v2_chr1_-_58586191_58586323	0.0116872	AGCUUAU	ENSMUST00000038372.7|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B 	ENSMUST00000097724.3|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B 	ENSMUST00000161000.1|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B 	ENSMUST00000161600.1|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B
mm10_v2_chr8_+_106935720_106935776	0.0114622	AGCUUAU	ENSMUST00000047425.3|Sntb2|ENSMUSG00000041308.5|syntrophin, basic 2
mm10_v2_chr8_-_34965631_34965714	0.0109911	AGCUUAU	ENSMUST00000033929.4|Tnks|ENSMUSG00000031529.4|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm10_v2_chr2_+_59612034_59612109	0.0087239	AGCUUAU	ENSMUST00000112568.1|Tanc1|ENSMUSG00000035168.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 	ENSMUST00000037526.4|Tanc1|ENSMUSG00000035168.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
mm10_v2_chr1_+_65186727_65186750	0.0072438	AGCUUAU	ENSMUST00000097707.4|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing 	ENSMUST00000081154.7|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing
mm10_v2_chr1_-_156939626_156939657	0.00646978	AGCUUAU	ENSMUST00000063199.6|Ralgps2|ENSMUSG00000026594.8|Ral GEF with PH domain and SH3 binding motif 2 	ENSMUST00000027886.7|Ralgps2|ENSMUSG00000026594.8|Ral GEF with PH domain and SH3 binding motif 2 	ENSMUST00000172057.1|Ralgps2|ENSMUSG00000026594.8|Ral GEF with PH domain and SH3 binding motif 2
mm10_v2_chr4_+_126103940_126104020	0.00644102	AGCUUAU	ENSMUST00000116286.2|Stk40|ENSMUSG00000042608.9|serine/threonine kinase 40 	ENSMUST00000094761.4|Stk40|ENSMUSG00000042608.9|serine/threonine kinase 40 	ENSMUST00000139524.1|Stk40|ENSMUSG00000042608.9|serine/threonine kinase 40
mm10_v2_chr6_-_86526164_86526187	0.00594649	AGCUUAU	ENSMUST00000053015.5|Pcbp1|ENSMUSG00000051695.5|poly(rC) binding protein 1
mm10_v2_chr3_-_9833653_9833679	0.00550049	AGCUUAU	ENSMUST00000161949.1|Pag1|ENSMUSG00000027508.9|phosphoprotein associated with glycosphingolipid microdomains 1
mm10_v2_chr17_-_88065291_88065291	0.00520833	AGCUUAU	ENSMUST00000005504.8|Fbxo11|ENSMUSG00000005371.8|F-box protein 11
mm10_v2_chr13_-_98891036_98891063	0.00467476	AGCUUAU	ENSMUST00000109399.2|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr2_+_118901428_118901488	0.00463396	AGCUUAU	ENSMUST00000036578.6|Bahd1|ENSMUSG00000040007.8|bromo adjacent homology domain containing 1
mm10_v2_chr14_+_31019125_31019157	0.00452713	AGCUUAU	ENSMUST00000112095.1|Pbrm1|ENSMUSG00000042323.10|polybromo 1 	ENSMUST00000112098.3|Pbrm1|ENSMUSG00000042323.10|polybromo 1 	ENSMUST00000112106.1|Pbrm1|ENSMUSG00000042323.10|polybromo 1 	ENSMUST00000146325.1|Pbrm1|ENSMUSG00000042323.10|polybromo 1
mm10_v2_chr1_-_17097839_17097889	0.00366397	AGCUUAU	ENSMUST00000038382.4|Jph1|ENSMUSG00000042686.4|junctophilin 1
mm10_v2_chr8_+_107293463_107293483	0.00364453	AGCUUAU	ENSMUST00000169453.1|Nfat5|ENSMUSG00000003847.10|nuclear factor of activated T cells 5
mm10_v2_chr1_-_161788489_161788496	0.0032276	AGCUUAU	ENSMUST00000000834.2|Fasl|ENSMUSG00000000817.9|Fas ligand (TNF superfamily, member 6)
mm10_v2_chr9_+_109875541_109875591	0.00318392	AGCUUAU	ENSMUST00000094324.3|Cdc25a|ENSMUSG00000032477.9|cell division cycle 25A
mm10_v2_chr19_+_7417586_7417650	0.00252611	AGCUUAU	ENSMUST00000159348.1|2700081O15Rik|ENSMUSG00000053080.9|RIKEN cDNA 2700081O15 gene
mm10_v2_chrX_+_161162744_161162775	0.00237544	AGCUUAU	ENSMUST00000074802.5|Scml2|ENSMUSG00000000037.10|sex comb on midleg-like 2 (Drosophila) 	ENSMUST00000019101.4|Scml2|ENSMUSG00000000037.10|sex comb on midleg-like 2 (Drosophila) 	ENSMUST00000112345.1|Scml2|ENSMUSG00000000037.10|sex comb on midleg-like 2 (Drosophila)
mm10_v2_chr13_+_81711407_81711457	0.00201454	AGCUUAU	ENSMUST00000057598.5|Mblac2|ENSMUSG00000051098.5|metallo-beta-lactamase domain containing 2
mm10_v2_chr17_+_29032664_29032681	0.00125279	AGCUUAU	ENSMUST00000130216.1|Srsf3|ENSMUSG00000071172.6|serine/arginine-rich splicing factor 3
mm10_v2_chr11_+_60931998_60932038	0.00080939	AGCUUAU	ENSMUST00000019076.3|Map2k3|ENSMUSG00000018932.3|mitogen-activated protein kinase kinase 3
