mm10_v2_chr10_+_4611971_4612021	3.42194	AGUGCAA	ENSMUST00000105590.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha) 	ENSMUST00000067086.7|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha)
mm10_v2_chr12_+_81026800_81026828	1.62533	AGUGCAA	ENSMUST00000110347.2|Smoc1|ENSMUSG00000021136.7|SPARC related  modular calcium binding 1 	ENSMUST00000021564.4|Smoc1|ENSMUSG00000021136.7|SPARC related  modular calcium binding 1 	ENSMUST00000129362.1|Smoc1|ENSMUSG00000021136.7|SPARC related  modular calcium binding 1
mm10_v2_chr11_-_119547744_119547759	1.35534	AGUGCAA	ENSMUST00000026670.4|Nptx1|ENSMUSG00000025582.4|neuronal pentraxin 1
mm10_v2_chr10_-_67912620_67912685	1.16397	AGUGCAA	ENSMUST00000064656.7|Zfp365|ENSMUSG00000037855.9|zinc finger protein 365
mm10_v2_chr5_+_76840597_76840637	1.05184	AGUGCAA	ENSMUST00000120639.2|C530008M17Rik|ENSMUSG00000036377.12|RIKEN cDNA C530008M17 gene 	ENSMUST00000163347.1|C530008M17Rik|ENSMUSG00000036377.12|RIKEN cDNA C530008M17 gene 	ENSMUST00000121851.1|C530008M17Rik|ENSMUSG00000036377.12|RIKEN cDNA C530008M17 gene
mm10_v2_chr3_-_33082004_33082068	1.01379	AGUGCAA	ENSMUST00000108225.3|Pex5l|ENSMUSG00000027674.10|peroxisomal biogenesis factor 5-like
mm10_v2_chr1_-_9700209_9700329	1.01291	AGUGCAA	ENSMUST00000088658.4|Mybl1|ENSMUSG00000025912.10|myeloblastosis oncogene-like 1
mm10_v2_chr18_-_77565050_77565162	0.958697	AGUGCAA	ENSMUST00000182153.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000182146.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000026494.7|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000182024.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165
mm10_v2_chr5_+_118169712_118169748	0.956008	AGUGCAA	ENSMUST00000054836.6|Hrk|ENSMUSG00000046607.6|harakiri, BCL2 interacting protein (contains only BH3 domain)
mm10_v2_chr11_-_90390895_90390926	0.910208	AGUGCAA	ENSMUST00000004051.7|Hlf|ENSMUSG00000003949.10|hepatic leukemia factor
mm10_v2_chr7_+_100227311_100227394	0.875682	AGUGCAA	ENSMUST00000084935.3|Pgm2l1|ENSMUSG00000030729.10|phosphoglucomutase 2-like 1
mm10_v2_chr17_+_42315947_42315947	0.86687	AGUGCAA	ENSMUST00000048691.4|Ptchd4|ENSMUSG00000042256.4|patched domain containing 4
mm10_v2_chr6_+_141249161_141249269	0.858657	AGUGCAA	ENSMUST00000043259.7|Pde3a|ENSMUSG00000041741.8|phosphodiesterase 3A, cGMP inhibited
mm10_v2_chr4_+_136172367_136172395	0.830309	AGUGCAA	ENSMUST00000061721.5|E2f2|ENSMUSG00000018983.9|E2F transcription factor 2
mm10_v2_chr2_-_110362985_110363001	0.807483	AGUGCAA	ENSMUST00000099626.3|Fibin|ENSMUSG00000074971.3|fin bud initiation factor homolog (zebrafish)
mm10_v2_chr13_-_28953690_28953713	0.800659	AGUGCAA	ENSMUST00000067230.5|Sox4|ENSMUSG00000076431.4|SRY-box containing gene 4
mm10_v2_chr12_-_102704896_102704980	0.789042	AGUGCAA	ENSMUST00000178697.1|Itpk1|ENSMUSG00000057963.3|inositol 1,3,4-triphosphate 5/6 kinase 	ENSMUST00000046518.5|Itpk1|ENSMUSG00000057963.3|inositol 1,3,4-triphosphate 5/6 kinase
mm10_v2_chr11_+_16951371_16951417	0.777745	AGUGCAA	ENSMUST00000109635.1|Fbxo48|ENSMUSG00000044966.4|F-box protein 48 	ENSMUST00000061327.1|Fbxo48|ENSMUSG00000044966.4|F-box protein 48
mm10_v2_chr4_+_101419277_101419332	0.734191	AGUGCAA	ENSMUST00000102780.1|Ak4|ENSMUSG00000028527.12|adenylate kinase 4 	ENSMUST00000106946.1|Ak4|ENSMUSG00000028527.12|adenylate kinase 4 	ENSMUST00000106945.1|Ak4|ENSMUSG00000028527.12|adenylate kinase 4
mm10_v2_chr2_+_107290590_107290660	0.719389	AGUGCAA	ENSMUST00000037012.2|Kcna4|ENSMUSG00000042604.5|potassium voltage-gated channel, shaker-related subfamily, member 4
mm10_v2_chr19_-_46327121_46327156	0.712102	AGUGCAA	ENSMUST00000041391.4|Psd|ENSMUSG00000037126.9|pleckstrin and Sec7 domain containing 	ENSMUST00000096029.5|Psd|ENSMUSG00000037126.9|pleckstrin and Sec7 domain containing
mm10_v2_chr2_-_42653598_42653598	0.705019	AGUGCAA	ENSMUST00000052550.6|Lrp1b|ENSMUSG00000049252.11|low density lipoprotein-related protein 1B (deleted in tumors)
mm10_v2_chr12_-_54986328_54986342	0.704399	AGUGCAA	ENSMUST00000038926.6|Baz1a|ENSMUSG00000035021.7|bromodomain adjacent to zinc finger domain 1A
mm10_v2_chr14_+_45219993_45219993	0.702058	AGUGCAA	ENSMUST00000146150.1|Gpr137c|ENSMUSG00000049092.10|G protein-coupled receptor 137C
mm10_v2_chr6_+_118066356_118066410	0.695418	AGUGCAA	ENSMUST00000164960.1|Rasgef1a|ENSMUSG00000030134.9|RasGEF domain family, member 1A
mm10_v2_chr2_+_181763315_181763335	0.691614	AGUGCAA	ENSMUST00000081125.4|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr3_-_32365643_32365691	0.673815	AGUGCAA	ENSMUST00000029199.5|Zmat3|ENSMUSG00000027663.6|zinc finger matrin type 3
mm10_v2_chr3_+_90341654_90341654	0.648178	AGUGCAA	ENSMUST00000049382.4|Gatad2b|ENSMUSG00000042390.5|GATA zinc finger domain containing 2B
mm10_v2_chr4_+_11156411_11156453	0.641047	AGUGCAA	ENSMUST00000029865.3|Trp53inp1|ENSMUSG00000028211.5|transformation related protein 53 inducible nuclear protein 1
mm10_v2_chr6_+_50110186_50110383	0.639555	AGUGCAA	ENSMUST00000166318.1|Mpp6|ENSMUSG00000038388.8|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) 	ENSMUST00000036236.8|Mpp6|ENSMUSG00000038388.8|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) 	ENSMUST00000036225.8|Mpp6|ENSMUSG00000038388.8|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
mm10_v2_chr3_+_102010138_102010171	0.633105	AGUGCAA	ENSMUST00000066187.4|Nhlh2|ENSMUSG00000048540.7|nescient helix loop helix 2
mm10_v2_chr5_-_96161990_96162097	0.622226	AGUGCAA	ENSMUST00000155901.1|Cnot6l|ENSMUSG00000034724.11|CCR4-NOT transcription complex, subunit 6-like
mm10_v2_chr5_+_121397936_121398004	0.619796	AGUGCAA	ENSMUST00000042163.8|Naa25|ENSMUSG00000042719.11|N(alpha)-acetyltransferase 25, NatB auxiliary subunit
mm10_v2_chr11_-_96005872_96005952	0.610256	AGUGCAA	ENSMUST00000013559.2|Igf2bp1|ENSMUSG00000013415.3|insulin-like growth factor 2 mRNA binding protein 1
mm10_v2_chr18_+_11633276_11633357	0.60852	AGUGCAA	ENSMUST00000115861.2|Rbbp8|ENSMUSG00000041238.9|retinoblastoma binding protein 8
mm10_v2_chr18_+_5591860_5591902	0.606667	AGUGCAA	ENSMUST00000025081.5|Zeb1|ENSMUSG00000024238.7|zinc finger E-box binding homeobox 1 	ENSMUST00000159390.1|Zeb1|ENSMUSG00000024238.7|zinc finger E-box binding homeobox 1
mm10_v2_chr7_-_132813799_132813905	0.600093	AGUGCAA	ENSMUST00000097998.2|Fam53b|ENSMUSG00000030956.9|family with sequence similarity 53, member B
mm10_v2_chr5_-_140649018_140649052	0.594988	AGUGCAA	ENSMUST00000042661.3|Ttyh3|ENSMUSG00000036565.3|tweety homolog 3 (Drosophila)
mm10_v2_chr9_+_118606687_118606751	0.580164	AGUGCAA	ENSMUST00000044165.7|Itga9|ENSMUSG00000039115.7|integrin alpha 9
mm10_v2_chr9_+_72532214_72532271	0.570513	AGUGCAA	ENSMUST00000163401.2|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7 	ENSMUST00000093820.3|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7
mm10_v2_chr18_+_22345089_22345089	0.563696	AGUGCAA	ENSMUST00000120223.1|Asxl3|ENSMUSG00000045215.10|additional sex combs like 3 (Drosophila) 	ENSMUST00000097655.3|Asxl3|ENSMUSG00000045215.10|additional sex combs like 3 (Drosophila)
mm10_v2_chr18_+_4634912_4634974	0.552596	AGUGCAA	ENSMUST00000037029.5|9430020K01Rik|ENSMUSG00000033960.5|RIKEN cDNA 9430020K01 gene
mm10_v2_chr2_+_92599671_92599724	0.546506	AGUGCAA	ENSMUST00000065797.6|Chst1|ENSMUSG00000027221.5|carbohydrate (keratan sulfate Gal-6) sulfotransferase 1
mm10_v2_chr18_+_14783238_14783259	0.53005	AGUGCAA	ENSMUST00000169862.1|Taf4b|ENSMUSG00000054321.6|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr7_+_130577334_130577484	0.528697	AGUGCAA	ENSMUST00000059145.7|Tacc2|ENSMUSG00000030852.9|transforming, acidic coiled-coil containing protein 2 	ENSMUST00000084513.4|Tacc2|ENSMUSG00000030852.9|transforming, acidic coiled-coil containing protein 2
mm10_v2_chr8_+_46471041_46471078	0.524895	AGUGCAA	ENSMUST00000034046.5|Acsl1|ENSMUSG00000018796.6|acyl-CoA synthetase long-chain family member 1
mm10_v2_chr12_+_37108533_37108546	0.513518	AGUGCAA	ENSMUST00000041183.5|Meox2|ENSMUSG00000036144.5|mesenchyme homeobox 2
mm10_v2_chr3_-_51560816_51560878	0.496352	AGUGCAA	ENSMUST00000037141.7|Setd7|ENSMUSG00000037111.8|SET domain containing (lysine methyltransferase) 7
mm10_v2_chr16_+_30599717_30599734	0.492877	AGUGCAA	ENSMUST00000059078.3|Fam43a|ENSMUSG00000046546.3|family with sequence similarity 43, member A
mm10_v2_chr15_-_73184840_73184971	0.491365	AGUGCAA	ENSMUST00000044113.10|Ago2|ENSMUSG00000036698.10|argonaute RISC catalytic subunit 2
mm10_v2_chr8_-_40511663_40511756	0.482846	AGUGCAA	ENSMUST00000135269.1|Cnot7|ENSMUSG00000031601.10|CCR4-NOT transcription complex, subunit 7 	ENSMUST00000034012.3|Cnot7|ENSMUSG00000031601.10|CCR4-NOT transcription complex, subunit 7
mm10_v2_chr10_+_110745433_110745572	0.479766	AGUGCAA	ENSMUST00000174857.1|E2f7|ENSMUSG00000020185.10|E2F transcription factor 7 	ENSMUST00000073781.5|E2f7|ENSMUSG00000020185.10|E2F transcription factor 7 	ENSMUST00000173471.1|E2f7|ENSMUSG00000020185.10|E2F transcription factor 7 	ENSMUST00000173634.1|E2f7|ENSMUSG00000020185.10|E2F transcription factor 7
mm10_v2_chrX_+_151198078_151198140	0.470782	AGUGCAA	ENSMUST00000184730.1|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3 	ENSMUST00000184392.1|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3 	ENSMUST00000096285.4|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3
mm10_v2_chr12_+_29528382_29528468	0.466519	AGUGCAA	ENSMUST00000049784.9|Myt1l|ENSMUSG00000061911.8|myelin transcription factor 1-like
mm10_v2_chr4_+_107802277_107802413	0.46171	AGUGCAA	ENSMUST00000106733.2|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENSMUST00000030356.3|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENSMUST00000106732.2|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENSMUST00000126573.1|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
mm10_v2_chr11_-_88851462_88851522	0.461501	AGUGCAA	ENSMUST00000107903.1|Akap1|ENSMUSG00000018428.9|A kinase (PRKA) anchor protein 1
mm10_v2_chr17_-_45686214_45686265	0.460763	AGUGCAA	ENSMUST00000113523.2|Tmem63b|ENSMUSG00000036026.9|transmembrane protein 63b
mm10_v2_chr13_+_44731265_44731276	0.456495	AGUGCAA	ENSMUST00000173246.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr1_+_132298606_132298631	0.452541	AGUGCAA	ENSMUST00000046071.4|Klhdc8a|ENSMUSG00000042115.4|kelch domain containing 8A
mm10_v2_chr9_+_15306212_15306219	0.448847	AGUGCAA	ENSMUST00000034415.5|Taf1d|ENSMUSG00000031939.9|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D 	ENSMUST00000164079.1|Taf1d|ENSMUSG00000031939.9|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D
mm10_v2_chr14_-_31417666_31417678	0.428848	AGUGCAA	ENSMUST00000100730.3|Sh3bp5|ENSMUSG00000021892.8|SH3-domain binding protein 5 (BTK-associated)
mm10_v2_chr9_+_77754526_77754541	0.428249	AGUGCAA	ENSMUST00000034905.8|Gclc|ENSMUSG00000032350.8|glutamate-cysteine ligase, catalytic subunit
mm10_v2_chr18_+_69345721_69345811	0.425461	AGUGCAA	ENSMUST00000078486.6|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114982.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr2_-_65567465_65567495	0.420078	AGUGCAA	ENSMUST00000066432.5|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr11_+_76202007_76202030	0.419781	AGUGCAA	ENSMUST00000094014.3|Fam57a|ENSMUSG00000069808.7|family with sequence similarity 57, member A
mm10_v2_chr14_+_11553523_11553542	0.396534	AGUGCAA	ENSMUST00000022264.6|Ptprg|ENSMUSG00000021745.7|protein tyrosine phosphatase, receptor type, G
mm10_v2_chr13_+_16014457_16014475	0.393068	AGUGCAA	ENSMUST00000164993.1|Inhba|ENSMUSG00000041324.7|inhibin beta-A
mm10_v2_chr6_-_12749193_12749253	0.392754	AGUGCAA	ENSMUST00000046121.6|Thsd7a|ENSMUSG00000032625.8|thrombospondin, type I, domain containing 7A 	ENSMUST00000172356.1|Thsd7a|ENSMUSG00000032625.8|thrombospondin, type I, domain containing 7A
mm10_v2_chr2_+_156196642_156196775	0.391245	AGUGCAA	ENSMUST00000037401.8|Phf20|ENSMUSG00000038116.10|PHD finger protein 20
mm10_v2_chr1_-_176807124_176807124	0.382418	AGUGCAA	ENSMUST00000057037.7|Cep170|ENSMUSG00000057335.6|centrosomal protein 170
mm10_v2_chr11_+_96323253_96323326	0.367889	AGUGCAA	ENSMUST00000093944.3|Hoxb3|ENSMUSG00000048763.5|homeobox B3
mm10_v2_chr19_+_36926071_36926177	0.36585	AGUGCAA	ENSMUST00000099494.3|Btaf1|ENSMUSG00000040565.7|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, (Mot1 homolog, S. cerevisiae)
mm10_v2_chr6_-_59024470_59024549	0.360186	AGUGCAA	ENSMUST00000089860.5|Fam13a|ENSMUSG00000037709.7|family with sequence similarity 13, member A
mm10_v2_chr10_-_71285234_71285262	0.352115	AGUGCAA	ENSMUST00000020085.6|Ube2d1|ENSMUSG00000019927.6|ubiquitin-conjugating enzyme E2D 1
mm10_v2_chr4_+_132768325_132768390	0.344959	AGUGCAA	ENSMUST00000102561.4|Rpa2|ENSMUSG00000028884.8|replication protein A2
mm10_v2_chr9_+_65908967_65909020	0.332955	AGUGCAA	ENSMUST00000034949.3|Csnk1g1|ENSMUSG00000032384.9|casein kinase 1, gamma 1 	ENSMUST00000154589.1|Csnk1g1|ENSMUSG00000032384.9|casein kinase 1, gamma 1
mm10_v2_chr2_-_45113255_45113279	0.332143	AGUGCAA	ENSMUST00000068415.4|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2 	ENSMUST00000127520.1|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr2_-_53191214_53191284	0.330934	AGUGCAA	ENSMUST00000076313.6|Prpf40a|ENSMUSG00000061136.7|PRP40 pre-mRNA processing factor 40 homolog A (yeast) 	ENSMUST00000125243.1|Prpf40a|ENSMUSG00000061136.7|PRP40 pre-mRNA processing factor 40 homolog A (yeast)
mm10_v2_chr18_+_84088077_84088178	0.32941	AGUGCAA	ENSMUST00000060223.2|Zadh2|ENSMUSG00000049090.2|zinc binding alcohol dehydrogenase, domain containing 2
mm10_v2_chr3_+_22076644_22076681	0.326002	AGUGCAA	ENSMUST00000063988.8|Tbl1xr1|ENSMUSG00000027630.8|transducin (beta)-like 1X-linked receptor 1
mm10_v2_chr10_-_49788743_49788769	0.322241	AGUGCAA	ENSMUST00000105483.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2) 	ENSMUST00000105487.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2)
mm10_v2_chr4_+_13743424_13743478	0.320994	AGUGCAA	ENSMUST00000006761.3|Runx1t1|ENSMUSG00000006586.9|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm10_v2_chr2_+_14074091_14074146	0.315924	AGUGCAA	ENSMUST00000102960.4|Stam|ENSMUSG00000026718.11|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
mm10_v2_chr1_+_6487231_6487338	0.313619	AGUGCAA	ENSMUST00000140079.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000131494.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr4_+_6191093_6191122	0.310973	AGUGCAA	ENSMUST00000029907.5|Ubxn2b|ENSMUSG00000028243.5|UBX domain protein 2B
mm10_v2_chr17_-_74294834_74294883	0.31081	AGUGCAA	ENSMUST00000078459.6|Memo1|ENSMUSG00000058704.7|mediator of cell motility 1
mm10_v2_chr11_-_49712674_49712726	0.309769	AGUGCAA	ENSMUST00000020624.6|Cnot6|ENSMUSG00000020362.7|CCR4-NOT transcription complex, subunit 6 	ENSMUST00000145353.1|Cnot6|ENSMUSG00000020362.7|CCR4-NOT transcription complex, subunit 6
mm10_v2_chr6_-_83441674_83441684	0.309289	AGUGCAA	ENSMUST00000089622.4|Tet3|ENSMUSG00000034832.9|tet methylcytosine dioxygenase 3
mm10_v2_chr14_-_31830402_31830440	0.304668	AGUGCAA	ENSMUST00000014640.7|Ankrd28|ENSMUSG00000014496.7|ankyrin repeat domain 28
mm10_v2_chrX_+_99821021_99821021	0.30006	AGUGCAA	ENSMUST00000096363.2|Tmem28|ENSMUSG00000071719.2|transmembrane protein 28
mm10_v2_chr5_-_32854185_32854256	0.298906	AGUGCAA	ENSMUST00000130134.2|Prr14l|ENSMUSG00000054280.8|proline rich 14-like 	ENSMUST00000120129.2|Prr14l|ENSMUSG00000054280.8|proline rich 14-like
mm10_v2_chr6_-_148896150_148896237	0.294939	AGUGCAA	ENSMUST00000072324.5|Caprin2|ENSMUSG00000030309.10|caprin family member 2 	ENSMUST00000111569.2|Caprin2|ENSMUSG00000030309.10|caprin family member 2
mm10_v2_chr6_-_67037399_67037417	0.292505	AGUGCAA	ENSMUST00000043098.6|Gadd45a|ENSMUSG00000036390.6|growth arrest and DNA-damage-inducible 45 alpha
mm10_v2_chr5_+_147430407_147430545	0.291941	AGUGCAA	ENSMUST00000176600.1|Pan3|ENSMUSG00000029647.9|PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm10_v2_chr5_-_143113008_143113020	0.29098	AGUGCAA	ENSMUST00000053498.8|Rnf216|ENSMUSG00000045078.8|ring finger protein 216
mm10_v2_chr1_-_46854046_46854079	0.289009	AGUGCAA	ENSMUST00000027131.4|Slc39a10|ENSMUSG00000025986.5|solute carrier family 39 (zinc transporter), member 10
mm10_v2_chr1_+_172341197_172341217	0.280188	AGUGCAA	ENSMUST00000056136.3|Kcnj10|ENSMUSG00000044708.5|potassium inwardly-rectifying channel, subfamily J, member 10
mm10_v2_chr8_-_121652895_121652913	0.278968	AGUGCAA	ENSMUST00000046386.4|Zcchc14|ENSMUSG00000061410.6|zinc finger, CCHC domain containing 14
mm10_v2_chr13_-_95891905_95891929	0.277896	AGUGCAA	ENSMUST00000068603.6|Iqgap2|ENSMUSG00000021676.9|IQ motif containing GTPase activating protein 2
mm10_v2_chr4_+_149485260_149485307	0.277831	AGUGCAA	ENSMUST00000030842.7|Lzic|ENSMUSG00000028990.7|leucine zipper and CTNNBIP1 domain containing
mm10_v2_chr11_+_52232009_52232041	0.274981	AGUGCAA	ENSMUST00000037324.5|Skp1a|ENSMUSG00000036309.8|S-phase kinase-associated protein 1A 	ENSMUST00000166537.1|Skp1a|ENSMUSG00000036309.8|S-phase kinase-associated protein 1A
mm10_v2_chr8_-_47352348_47352367	0.265431	AGUGCAA	ENSMUST00000110367.2|Stox2|ENSMUSG00000038143.8|storkhead box 2
mm10_v2_chr2_+_25180737_25180764	0.254138	AGUGCAA	ENSMUST00000104999.2|Nrarp|ENSMUSG00000078202.2|Notch-regulated ankyrin repeat protein
mm10_v2_chr12_-_72408934_72409054	0.251754	AGUGCAA	ENSMUST00000078505.7|Rtn1|ENSMUSG00000021087.11|reticulon 1
mm10_v2_chr4_-_108780782_108780803	0.251168	AGUGCAA	ENSMUST00000106657.1|Zfyve9|ENSMUSG00000034557.8|zinc finger, FYVE domain containing 9
mm10_v2_chr2_+_138256530_138256615	0.248714	AGUGCAA	ENSMUST00000091556.5|Btbd3|ENSMUSG00000062098.5|BTB (POZ) domain containing 3
mm10_v2_chr11_-_12037391_12037407	0.243638	AGUGCAA	ENSMUST00000093321.5|Grb10|ENSMUSG00000020176.11|growth factor receptor bound protein 10
mm10_v2_chrX_-_8074720_8074760	0.23982	AGUGCAA	ENSMUST00000115636.3|Suv39h1|ENSMUSG00000039231.12|suppressor of variegation 3-9 homolog 1 (Drosophila) 	ENSMUST00000115638.3|Suv39h1|ENSMUSG00000039231.12|suppressor of variegation 3-9 homolog 1 (Drosophila)
mm10_v2_chr15_-_102516806_102517064	0.238871	AGUGCAA	ENSMUST00000169162.1|Map3k12|ENSMUSG00000023050.2|mitogen-activated protein kinase kinase kinase 12 	ENSMUST00000023812.2|Map3k12|ENSMUSG00000023050.2|mitogen-activated protein kinase kinase kinase 12 	ENSMUST00000165174.1|Map3k12|ENSMUSG00000023050.2|mitogen-activated protein kinase kinase kinase 12 	ENSMUST00000169367.1|Map3k12|ENSMUSG00000023050.2|mitogen-activated protein kinase kinase kinase 12 	ENSMUST00000169377.1|Map3k12|ENSMUSG00000023050.2|mitogen-activated protein kinase kinase kinase 12
mm10_v2_chr12_+_29938036_29938059	0.231436	AGUGCAA	ENSMUST00000122328.1|Pxdn|ENSMUSG00000020674.10|peroxidasin homolog (Drosophila) 	ENSMUST00000118321.1|Pxdn|ENSMUSG00000020674.10|peroxidasin homolog (Drosophila)
mm10_v2_chr14_+_103650208_103650243	0.230631	AGUGCAA	ENSMUST00000069443.7|Slain1|ENSMUSG00000055717.7|SLAIN motif family, member 1
mm10_v2_chr3_+_34020075_34020082	0.230538	AGUGCAA	ENSMUST00000001620.8|Fxr1|ENSMUSG00000027680.9|fragile X mental retardation gene 1, autosomal homolog 	ENSMUST00000167354.1|Fxr1|ENSMUSG00000027680.9|fragile X mental retardation gene 1, autosomal homolog
mm10_v2_chr14_-_26971232_26971232	0.230034	AGUGCAA	ENSMUST00000036570.4|Appl1|ENSMUSG00000040760.4|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm10_v2_chrX_+_68678541_68678554	0.229059	AGUGCAA	ENSMUST00000088546.5|Fmr1|ENSMUSG00000000838.11|fragile X mental retardation syndrome 1
mm10_v2_chr10_-_80387642_80387666	0.228049	AGUGCAA	ENSMUST00000062946.6|Mex3d|ENSMUSG00000048696.10|mex3 homolog D (C. elegans) 	ENSMUST00000105350.1|Mex3d|ENSMUSG00000048696.10|mex3 homolog D (C. elegans)
mm10_v2_chr3_-_116508071_116508208	0.226235	AGUGCAA	ENSMUST00000000348.8|Rtca|ENSMUSG00000000339.8|RNA 3'-terminal phosphate cyclase
mm10_v2_chr4_+_109280266_109280315	0.22497	AGUGCAA	ENSMUST00000102729.3|Eps15|ENSMUSG00000028552.7|epidermal growth factor receptor pathway substrate 15
mm10_v2_chr12_-_79296266_79296310	0.223215	AGUGCAA	ENSMUST00000021547.6|Zfyve26|ENSMUSG00000066440.4|zinc finger, FYVE domain containing 26
mm10_v2_chr12_-_54862783_54862921	0.220294	AGUGCAA	ENSMUST00000078124.7|Cfl2|ENSMUSG00000062929.7|cofilin 2, muscle
mm10_v2_chr10_+_42860348_42860377	0.220177	AGUGCAA	ENSMUST00000063063.7|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr2_+_153741274_153741294	0.218741	AGUGCAA	ENSMUST00000028981.8|Mapre1|ENSMUSG00000027479.8|microtubule-associated protein, RP/EB family, member 1
mm10_v2_chr2_-_181135103_181135213	0.217785	AGUGCAA	ENSMUST00000149964.2|Kcnq2|ENSMUSG00000016346.11|potassium voltage-gated channel, subfamily Q, member 2 	ENSMUST00000103050.3|Kcnq2|ENSMUSG00000016346.11|potassium voltage-gated channel, subfamily Q, member 2 	ENSMUST00000081528.6|Kcnq2|ENSMUSG00000016346.11|potassium voltage-gated channel, subfamily Q, member 2 	ENSMUST00000049792.8|Kcnq2|ENSMUSG00000016346.11|potassium voltage-gated channel, subfamily Q, member 2 	ENSMUST00000103048.3|Kcnq2|ENSMUSG00000016346.11|potassium voltage-gated channel, subfamily Q, member 2 	ENSMUST00000103047.3|Kcnq2|ENSMUSG00000016346.11|potassium voltage-gated channel, subfamily Q, member 2 	ENSMUST00000129073.1|Kcnq2|ENSMUSG00000016346.11|potassium voltage-gated channel, subfamily Q, member 2 	ENSMUST00000144592.1|Kcnq2|ENSMUSG00000016346.11|potassium voltage-gated channel, subfamily Q, member 2 	ENSMUST00000139458.1|Kcnq2|ENSMUSG00000016346.11|potassium voltage-gated channel, subfamily Q, member 2 	ENSMUST00000154164.1|Kcnq2|ENSMUSG00000016346.11|potassium voltage-gated channel, subfamily Q, member 2 	ENSMUST00000123336.1|Kcnq2|ENSMUSG00000016346.11|potassium voltage-gated channel, subfamily Q, member 2 	ENSMUST00000129361.1|Kcnq2|ENSMUSG00000016346.11|potassium voltage-gated channel, subfamily Q, member 2 	ENSMUST00000103051.2|Kcnq2|ENSMUSG00000016346.11|potassium voltage-gated channel, subfamily Q, member 2
mm10_v2_chr4_+_135120640_135120660	0.216862	AGUGCAA	ENSMUST00000056977.7|Runx3|ENSMUSG00000070691.4|runt related transcription factor 3
mm10_v2_chr8_-_25754214_25754280	0.215995	AGUGCAA	ENSMUST00000033975.6|Ddhd2|ENSMUSG00000061313.7|DDHD domain containing 2
mm10_v2_chr2_-_160367057_160367073	0.215958	AGUGCAA	ENSMUST00000099126.3|Mafb|ENSMUSG00000074622.3|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)
mm10_v2_chr1_-_97661950_97662074	0.214638	AGUGCAA	ENSMUST00000053033.7|D1Ertd622e|ENSMUSG00000044768.10|DNA segment, Chr 1, ERATO Doi 622, expressed 	ENSMUST00000149927.1|D1Ertd622e|ENSMUSG00000044768.10|DNA segment, Chr 1, ERATO Doi 622, expressed
mm10_v2_chr2_+_80638798_80638834	0.213104	AGUGCAA	ENSMUST00000028382.6|Nup35|ENSMUSG00000026999.8|nucleoporin 35 	ENSMUST00000124377.1|Nup35|ENSMUSG00000026999.8|nucleoporin 35
mm10_v2_chr17_-_45549655_45549677	0.209412	AGUGCAA	ENSMUST00000180252.1|Tmem151b|ENSMUSG00000096847.1|transmembrane protein 151B
mm10_v2_chr10_+_128377086_128377155	0.20833	AGUGCAA	ENSMUST00000014642.3|Ankrd52|ENSMUSG00000014498.3|ankyrin repeat domain 52
mm10_v2_chr6_-_143947092_143947111	0.203994	AGUGCAA	ENSMUST00000144289.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5 	ENSMUST00000111748.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr2_+_93642307_93642388	0.203037	AGUGCAA	ENSMUST00000042078.3|Alx4|ENSMUSG00000040310.6|aristaless-like homeobox 4 	ENSMUST00000111254.1|Alx4|ENSMUSG00000040310.6|aristaless-like homeobox 4
mm10_v2_chr15_+_89253035_89253035	0.202555	AGUGCAA	ENSMUST00000088788.3|Ppp6r2|ENSMUSG00000036561.7|protein phosphatase 6, regulatory subunit 2
mm10_v2_chr11_-_74724670_74724702	0.198995	AGUGCAA	ENSMUST00000021091.8|Pafah1b1|ENSMUSG00000020745.9|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
mm10_v2_chr4_-_138913915_138913983	0.197561	AGUGCAA	ENSMUST00000097830.3|Otud3|ENSMUSG00000041161.8|OTU domain containing 3
mm10_v2_chr19_-_31765027_31765079	0.195717	AGUGCAA	ENSMUST00000065067.6|Prkg1|ENSMUSG00000052920.8|protein kinase, cGMP-dependent, type I
mm10_v2_chr17_-_31855782_31855802	0.194964	AGUGCAA	ENSMUST00000024839.4|Sik1|ENSMUSG00000024042.6|salt inducible kinase 1
mm10_v2_chr9_-_42472198_42472265	0.193912	AGUGCAA	ENSMUST00000128959.1|Tbcel|ENSMUSG00000037287.8|tubulin folding cofactor E-like 	ENSMUST00000066148.5|Tbcel|ENSMUSG00000037287.8|tubulin folding cofactor E-like 	ENSMUST00000138506.1|Tbcel|ENSMUSG00000037287.8|tubulin folding cofactor E-like
mm10_v2_chr7_-_131410495_131410521	0.193452	AGUGCAA	ENSMUST00000121033.1|Ikzf5|ENSMUSG00000040167.9|IKAROS family zinc finger 5 	ENSMUST00000046306.8|Ikzf5|ENSMUSG00000040167.9|IKAROS family zinc finger 5
mm10_v2_chr7_-_45717919_45718002	0.192564	AGUGCAA	ENSMUST00000107737.2|Sphk2|ENSMUSG00000057342.7|sphingosine kinase 2
mm10_v2_chr2_-_79456750_79456761	0.191526	AGUGCAA	ENSMUST00000041099.4|Neurod1|ENSMUSG00000034701.9|neurogenic differentiation 1
mm10_v2_chr2_-_104816696_104816792	0.189223	AGUGCAA	ENSMUST00000117237.1|Qser1|ENSMUSG00000074994.4|glutamine and serine rich 1
mm10_v2_chr2_+_152226839_152226908	0.188226	AGUGCAA	ENSMUST00000099224.3|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide 	ENSMUST00000124791.1|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide 	ENSMUST00000133119.1|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide
mm10_v2_chr11_-_107131922_107131954	0.18706	AGUGCAA	ENSMUST00000057892.8|Bptf|ENSMUSG00000040481.10|bromodomain PHD finger transcription factor
mm10_v2_chr7_+_92741603_92741715	0.182681	AGUGCAA	ENSMUST00000032879.7|Rab30|ENSMUSG00000030643.7|RAB30, member RAS oncogene family
mm10_v2_chr2_+_18064564_18064644	0.178117	AGUGCAA	ENSMUST00000114671.1|Mllt10|ENSMUSG00000026743.10|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm10_v2_chr2_+_112379204_112379253	0.178088	AGUGCAA	ENSMUST00000028552.3|Katnbl1|ENSMUSG00000027132.3|katanin p80 subunit B like 1
mm10_v2_chr11_+_105589970_105590028	0.174635	AGUGCAA	ENSMUST00000168598.1|Tanc2|ENSMUSG00000053580.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 	ENSMUST00000100330.3|Tanc2|ENSMUSG00000053580.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm10_v2_chr9_-_107231816_107231909	0.173079	AGUGCAA	ENSMUST00000044532.4|Dock3|ENSMUSG00000039716.6|dedicator of cyto-kinesis 3
mm10_v2_chr5_-_62766153_62766246	0.172604	AGUGCAA	ENSMUST00000076623.4|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr1_-_143776973_143777068	0.171847	AGUGCAA	ENSMUST00000159879.1|Trove2|ENSMUSG00000018199.8|TROVE domain family, member 2
mm10_v2_chr16_+_33684460_33684472	0.170593	AGUGCAA	ENSMUST00000152782.1|Heg1|ENSMUSG00000075254.5|HEG homolog 1 (zebrafish) 	ENSMUST00000179453.1|Heg1|ENSMUSG00000075254.5|HEG homolog 1 (zebrafish)
mm10_v2_chr15_+_12205009_12205040	0.167619	AGUGCAA	ENSMUST00000038172.8|Mtmr12|ENSMUSG00000039458.8|myotubularin related protein 12
mm10_v2_chr5_-_99978914_99978966	0.167216	AGUGCAA	ENSMUST00000112939.3|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000171786.1|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000072750.6|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000019128.8|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000172361.1|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D
mm10_v2_chr3_-_9610074_9610086	0.167203	AGUGCAA	ENSMUST00000041124.7|Zfp704|ENSMUSG00000040209.7|zinc finger protein 704
mm10_v2_chr5_+_30232581_30232680	0.167006	AGUGCAA	ENSMUST00000145167.1|Ept1|ENSMUSG00000075703.9|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)
mm10_v2_chr10_+_39369750_39369804	0.166716	AGUGCAA	ENSMUST00000063091.6|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene 	ENSMUST00000099967.3|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene 	ENSMUST00000126486.1|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene
mm10_v2_chr13_-_43304153_43304213	0.166512	AGUGCAA	ENSMUST00000055341.5|Gfod1|ENSMUSG00000051335.5|glucose-fructose oxidoreductase domain containing 1
mm10_v2_chr5_-_123684289_123684379	0.166146	AGUGCAA	ENSMUST00000111564.1|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1 	ENSMUST00000063905.5|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1
mm10_v2_chr6_+_86849488_86849628	0.161331	AGUGCAA	ENSMUST00000089519.6|Aak1|ENSMUSG00000057230.7|AP2 associated kinase 1 	ENSMUST00000113668.1|Aak1|ENSMUSG00000057230.7|AP2 associated kinase 1
mm10_v2_chr2_+_134786154_134786170	0.160838	AGUGCAA	ENSMUST00000110116.1|Plcb1|ENSMUSG00000051177.10|phospholipase C, beta 1
mm10_v2_chr5_-_53213447_53213473	0.160031	AGUGCAA	ENSMUST00000031090.6|Sel1l3|ENSMUSG00000029189.6|sel-1 suppressor of lin-12-like 3 (C. elegans)
mm10_v2_chr6_+_136518820_136518851	0.157315	AGUGCAA	ENSMUST00000032335.6|Atf7ip|ENSMUSG00000030213.6|activating transcription factor 7 interacting protein
mm10_v2_chr16_+_42907563_42907684	0.15221	AGUGCAA	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chrX_+_52988119_52988148	0.151112	AGUGCAA	ENSMUST00000026723.8|Hprt|ENSMUSG00000025630.8|hypoxanthine guanine phosphoribosyl transferase
mm10_v2_chrX_-_7188713_7188743	0.150763	AGUGCAA	ENSMUST00000004428.7|Clcn5|ENSMUSG00000004317.8|chloride channel 5
mm10_v2_chr5_+_137350371_137350513	0.149704	AGUGCAA	ENSMUST00000166239.1|Ephb4|ENSMUSG00000029710.9|Eph receptor B4 	ENSMUST00000111054.1|Ephb4|ENSMUSG00000029710.9|Eph receptor B4
mm10_v2_chr5_-_138155694_138155744	0.148721	AGUGCAA	ENSMUST00000132318.1|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113 	ENSMUST00000049393.8|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113
mm10_v2_chr2_+_30364227_30364260	0.147068	AGUGCAA	ENSMUST00000077977.7|Fam73b|ENSMUSG00000026858.12|family with sequence similarity 73, member B 	ENSMUST00000140075.2|Fam73b|ENSMUSG00000026858.12|family with sequence similarity 73, member B
mm10_v2_chr14_+_111675113_111675119	0.146573	AGUGCAA	ENSMUST00000042767.7|Slitrk5|ENSMUSG00000033214.9|SLIT and NTRK-like family, member 5
mm10_v2_chr4_+_21931291_21931366	0.145642	AGUGCAA	ENSMUST00000029908.7|Faxc|ENSMUSG00000028246.7|failed axon connections homolog (Drosophila)
mm10_v2_chr8_-_115707778_115707794	0.14502	AGUGCAA	ENSMUST00000109104.1|Maf|ENSMUSG00000055435.6|avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog
mm10_v2_chr7_-_118491912_118491975	0.14473	AGUGCAA	ENSMUST00000178344.1|Itpripl2|ENSMUSG00000095115.1|inositol 1,4,5-triphosphate receptor interacting protein-like 2
mm10_v2_chr10_+_40349265_40349387	0.144312	AGUGCAA	ENSMUST00000044672.4|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19 	ENSMUST00000095743.2|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19
mm10_v2_chr10_-_128645965_128645991	0.144096	AGUGCAA	ENSMUST00000133342.1|Ikzf4|ENSMUSG00000002578.9|IKAROS family zinc finger 4
mm10_v2_chr2_-_20968881_20968957	0.142685	AGUGCAA	ENSMUST00000114594.1|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21
mm10_v2_chr3_-_104961695_104961728	0.142655	AGUGCAA	ENSMUST00000029429.4|Wnt2b|ENSMUSG00000027840.4|wingless related MMTV integration site 2b
mm10_v2_chr14_-_74947865_74947883	0.140647	AGUGCAA	ENSMUST00000088970.5|Lrch1|ENSMUSG00000068015.6|leucine-rich repeats and calponin homology (CH) domain containing 1
mm10_v2_chr4_-_151861762_151861876	0.139978	AGUGCAA	ENSMUST00000097774.2|Camta1|ENSMUSG00000014592.13|calmodulin binding transcription activator 1
mm10_v2_chr14_-_48665098_48665246	0.13864	AGUGCAA	ENSMUST00000118578.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila)
mm10_v2_chr9_-_116175318_116175363	0.137635	AGUGCAA	ENSMUST00000061101.4|Tgfbr2|ENSMUSG00000032440.6|transforming growth factor, beta receptor II 	ENSMUST00000035014.6|Tgfbr2|ENSMUSG00000032440.6|transforming growth factor, beta receptor II
mm10_v2_chr1_+_59764264_59764286	0.1357	AGUGCAA	ENSMUST00000087435.5|Bmpr2|ENSMUSG00000067336.5|bone morphogenetic protein receptor, type II (serine/threonine kinase)
mm10_v2_chr17_-_66519666_66519727	0.131691	AGUGCAA	ENSMUST00000167962.1|Rab12|ENSMUSG00000023460.6|RAB12, member RAS oncogene family 	ENSMUST00000070538.4|Rab12|ENSMUSG00000023460.6|RAB12, member RAS oncogene family
mm10_v2_chr18_+_62922317_62922339	0.131644	AGUGCAA	ENSMUST00000096554.4|Apcdd1|ENSMUSG00000071847.6|adenomatosis polyposis coli down-regulated 1 	ENSMUST00000163716.2|Apcdd1|ENSMUSG00000071847.6|adenomatosis polyposis coli down-regulated 1
mm10_v2_chr12_-_98577940_98578046	0.1305	AGUGCAA	ENSMUST00000110113.1|Kcnk10|ENSMUSG00000033854.9|potassium channel, subfamily K, member 10
mm10_v2_chr13_-_93499803_93499825	0.129914	AGUGCAA	ENSMUST00000065537.7|Jmy|ENSMUSG00000021690.9|junction-mediating and regulatory protein
mm10_v2_chr10_-_78352323_78352459	0.129431	AGUGCAA	ENSMUST00000001240.5|Agpat3|ENSMUSG00000001211.8|1-acylglycerol-3-phosphate O-acyltransferase 3
mm10_v2_chr4_-_126468580_126468653	0.129112	AGUGCAA	ENSMUST00000097888.3|Ago1|ENSMUSG00000041530.10|argonaute RISC catalytic subunit 1
mm10_v2_chr1_+_87755870_87756115	0.128326	AGUGCAA	ENSMUST00000144047.1|Atg16l1|ENSMUSG00000026289.9|autophagy related 16-like 1 (S. cerevisiae) 	ENSMUST00000027512.6|Atg16l1|ENSMUSG00000026289.9|autophagy related 16-like 1 (S. cerevisiae) 	ENSMUST00000113186.1|Atg16l1|ENSMUSG00000026289.9|autophagy related 16-like 1 (S. cerevisiae) 	ENSMUST00000113190.2|Atg16l1|ENSMUSG00000026289.9|autophagy related 16-like 1 (S. cerevisiae)
mm10_v2_chr2_-_167492826_167492891	0.127324	AGUGCAA	ENSMUST00000109211.2|Spata2|ENSMUSG00000047030.9|spermatogenesis associated 2 	ENSMUST00000057627.9|Spata2|ENSMUSG00000047030.9|spermatogenesis associated 2
mm10_v2_chr16_+_44139821_44139900	0.126508	AGUGCAA	ENSMUST00000159514.1|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000161326.1|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000063520.8|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000063542.7|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm10_v2_chr14_-_63543931_63543991	0.125264	AGUGCAA	ENSMUST00000058679.5|Mtmr9|ENSMUSG00000035078.5|myotubularin related protein 9
mm10_v2_chr9_+_53537021_53537074	0.123992	AGUGCAA	ENSMUST00000035850.7|Npat|ENSMUSG00000033054.7|nuclear protein in the AT region
mm10_v2_chr6_+_108213086_108213123	0.12293	AGUGCAA	ENSMUST00000032192.6|Itpr1|ENSMUSG00000030102.8|inositol 1,4,5-trisphosphate receptor 1
mm10_v2_chr9_+_57708534_57708608	0.122266	AGUGCAA	ENSMUST00000043990.7|Edc3|ENSMUSG00000038957.7|enhancer of mRNA decapping 3 homolog (S. cerevisiae) 	ENSMUST00000142807.1|Edc3|ENSMUSG00000038957.7|enhancer of mRNA decapping 3 homolog (S. cerevisiae)
mm10_v2_chr7_+_45163915_45163926	0.122061	AGUGCAA	ENSMUST00000085374.5|Slc17a7|ENSMUSG00000070570.4|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7
mm10_v2_chr10_+_81136223_81136271	0.122037	AGUGCAA	ENSMUST00000048128.8|Zbtb7a|ENSMUSG00000035011.9|zinc finger and BTB domain containing 7a
mm10_v2_chr10_+_106470281_106470367	0.121906	AGUGCAA	ENSMUST00000029404.9|Ppfia2|ENSMUSG00000053825.8|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENSMUST00000169303.1|Ppfia2|ENSMUSG00000053825.8|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm10_v2_chr4_-_132212255_132212303	0.120803	AGUGCAA	ENSMUST00000152796.1|Ythdf2|ENSMUSG00000040025.11|YTH domain family 2
mm10_v2_chr2_+_118663235_118663309	0.119602	AGUGCAA	ENSMUST00000099557.3|Pak6|ENSMUSG00000074923.4|p21 protein (Cdc42/Rac)-activated kinase 6
mm10_v2_chr1_+_39900883_39900963	0.118813	AGUGCAA	ENSMUST00000163854.2|Map4k4|ENSMUSG00000026074.8|mitogen-activated protein kinase kinase kinase kinase 4 	ENSMUST00000168431.1|Map4k4|ENSMUSG00000026074.8|mitogen-activated protein kinase kinase kinase kinase 4
mm10_v2_chr16_+_58408443_58408523	0.117563	AGUGCAA	ENSMUST00000046663.7|Dcbld2|ENSMUSG00000035107.7|discoidin, CUB and LCCL domain containing 2
mm10_v2_chr4_+_59189240_59189257	0.116938	AGUGCAA	ENSMUST00000030074.7|Ugcg|ENSMUSG00000028381.8|UDP-glucose ceramide glucosyltransferase
mm10_v2_chr13_-_119790805_119790805	0.115715	AGUGCAA	ENSMUST00000178271.1|Zfp131|ENSMUSG00000094870.1|zinc finger protein 131 	ENSMUST00000177916.1|Zfp131|ENSMUSG00000094870.1|zinc finger protein 131
mm10_v2_chr14_-_47568427_47568436	0.115324	AGUGCAA	ENSMUST00000042988.6|Atg14|ENSMUSG00000037526.6|autophagy related 14
mm10_v2_chr9_+_31030621_31030700	0.115095	AGUGCAA	ENSMUST00000115222.2|Zbtb44|ENSMUSG00000047412.9|zinc finger and BTB domain containing 44
mm10_v2_chr18_+_10725530_10725564	0.112307	AGUGCAA	ENSMUST00000052838.4|Mib1|ENSMUSG00000024294.7|mindbomb homolog 1 (Drosophila)
mm10_v2_chr18_+_53176345_53176376	0.110336	AGUGCAA	ENSMUST00000037850.5|Snx2|ENSMUSG00000034484.7|sorting nexin 2
mm10_v2_chr4_-_141790891_141790931	0.109608	AGUGCAA	ENSMUST00000038014.4|Dnajc16|ENSMUSG00000040697.4|DnaJ (Hsp40) homolog, subfamily C, member 16 	ENSMUST00000153880.1|Dnajc16|ENSMUSG00000040697.4|DnaJ (Hsp40) homolog, subfamily C, member 16
mm10_v2_chr18_-_21300129_21300168	0.108949	AGUGCAA	ENSMUST00000049260.6|Garem|ENSMUSG00000042680.7|GRB2 associated, regulator of MAPK1
mm10_v2_chr3_-_119783262_119783388	0.108707	AGUGCAA	ENSMUST00000029780.7|Ptbp2|ENSMUSG00000028134.7|polypyrimidine tract binding protein 2
mm10_v2_chr7_-_63938862_63938933	0.107992	AGUGCAA	ENSMUST00000063694.8|Klf13|ENSMUSG00000052040.9|Kruppel-like factor 13
mm10_v2_chr1_-_161131428_161131511	0.10694	AGUGCAA	ENSMUST00000111611.1|Klhl20|ENSMUSG00000026705.10|kelch-like 20
mm10_v2_chr5_-_3803081_3803119	0.106702	AGUGCAA	ENSMUST00000043551.6|Ankib1|ENSMUSG00000040351.7|ankyrin repeat and IBR domain containing 1
mm10_v2_chr1_-_64121456_64121491	0.106496	AGUGCAA	ENSMUST00000142009.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous) 	ENSMUST00000114086.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chrX_+_66649318_66649394	0.104708	AGUGCAA	ENSMUST00000166241.1|Slitrk2|ENSMUSG00000036790.5|SLIT and NTRK-like family, member 2
mm10_v2_chr17_-_81649607_81649607	0.102102	AGUGCAA	ENSMUST00000163680.2|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1 	ENSMUST00000086538.3|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1 	ENSMUST00000163123.1|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1
mm10_v2_chr12_+_111574491_111574542	0.101847	AGUGCAA	ENSMUST00000084953.5|Mark3|ENSMUSG00000007411.9|MAP/microtubule affinity-regulating kinase 3 	ENSMUST00000075281.6|Mark3|ENSMUSG00000007411.9|MAP/microtubule affinity-regulating kinase 3
mm10_v2_chr4_-_126429501_126429556	0.101413	AGUGCAA	ENSMUST00000069097.6|Ago3|ENSMUSG00000028842.9|argonaute RISC catalytic subunit 3
mm10_v2_chr6_-_119848120_119848168	0.100557	AGUGCAA	ENSMUST00000183703.1|Erc1|ENSMUSG00000030172.9|ELKS/RAB6-interacting/CAST family member 1 	ENSMUST00000183911.1|Erc1|ENSMUSG00000030172.9|ELKS/RAB6-interacting/CAST family member 1
mm10_v2_chr1_-_119422239_119422291	0.100377	AGUGCAA	ENSMUST00000038765.5|Inhbb|ENSMUSG00000037035.5|inhibin beta-B
mm10_v2_chr4_-_141139727_141139772	0.0993013	AGUGCAA	ENSMUST00000148204.1|Szrd1|ENSMUSG00000040842.11|SUZ RNA binding domain containing 1 	ENSMUST00000102487.3|Szrd1|ENSMUSG00000040842.11|SUZ RNA binding domain containing 1
mm10_v2_chr16_-_17722879_17722936	0.0990825	AGUGCAA	ENSMUST00000080936.6|Med15|ENSMUSG00000012114.10|mediator complex subunit 15 	ENSMUST00000012259.7|Med15|ENSMUSG00000012114.10|mediator complex subunit 15
mm10_v2_chr18_-_35215008_35215033	0.095003	AGUGCAA	ENSMUST00000091636.3|Lrrtm2|ENSMUSG00000071862.2|leucine rich repeat transmembrane neuronal 2
mm10_v2_chr3_+_86070915_86070915	0.0922116	AGUGCAA	ENSMUST00000182666.1|Sh3d19|ENSMUSG00000028082.7|SH3 domain protein D19
mm10_v2_chr15_-_77307043_77307058	0.0919268	AGUGCAA	ENSMUST00000048145.5|Rbfox2|ENSMUSG00000033565.10|RNA binding protein, fox-1 homolog (C. elegans) 2 	ENSMUST00000171751.1|Rbfox2|ENSMUSG00000033565.10|RNA binding protein, fox-1 homolog (C. elegans) 2
mm10_v2_chr11_+_87127052_87127105	0.0913549	AGUGCAA	ENSMUST00000041282.6|Trim37|ENSMUSG00000018548.9|tripartite motif-containing 37
mm10_v2_chr8_+_105170668_105170686	0.0912044	AGUGCAA	ENSMUST00000109395.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000109394.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000052209.2|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000109392.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta
mm10_v2_chr4_-_44167580_44167608	0.0894774	AGUGCAA	ENSMUST00000098098.2|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chr6_-_28261907_28261943	0.0890077	AGUGCAA	ENSMUST00000115320.1|Zfp800|ENSMUSG00000039841.8|zinc finger protein 800 	ENSMUST00000123098.1|Zfp800|ENSMUSG00000039841.8|zinc finger protein 800 	ENSMUST00000115321.2|Zfp800|ENSMUSG00000039841.8|zinc finger protein 800 	ENSMUST00000155494.1|Zfp800|ENSMUSG00000039841.8|zinc finger protein 800
mm10_v2_chr3_-_115715031_115715062	0.0885501	AGUGCAA	ENSMUST00000055676.2|S1pr1|ENSMUSG00000045092.7|sphingosine-1-phosphate receptor 1
mm10_v2_chr5_+_75574916_75575001	0.0850714	AGUGCAA	ENSMUST00000144270.1|Kit|ENSMUSG00000005672.6|kit oncogene 	ENSMUST00000005815.6|Kit|ENSMUSG00000005672.6|kit oncogene
mm10_v2_chr14_-_118706180_118706234	0.0847149	AGUGCAA	ENSMUST00000036554.6|Abcc4|ENSMUSG00000032849.7|ATP-binding cassette, sub-family C (CFTR/MRP), member 4 	ENSMUST00000166646.1|Abcc4|ENSMUSG00000032849.7|ATP-binding cassette, sub-family C (CFTR/MRP), member 4
mm10_v2_chr10_+_56377300_56377338	0.0822925	AGUGCAA	ENSMUST00000068581.7|Gja1|ENSMUSG00000050953.9|gap junction protein, alpha 1
mm10_v2_chr1_-_156939626_156939657	0.0820239	AGUGCAA	ENSMUST00000063199.6|Ralgps2|ENSMUSG00000026594.8|Ral GEF with PH domain and SH3 binding motif 2 	ENSMUST00000027886.7|Ralgps2|ENSMUSG00000026594.8|Ral GEF with PH domain and SH3 binding motif 2 	ENSMUST00000172057.1|Ralgps2|ENSMUSG00000026594.8|Ral GEF with PH domain and SH3 binding motif 2
mm10_v2_chr13_+_56702983_56703112	0.0813187	AGUGCAA	ENSMUST00000069557.7|Smad5|ENSMUSG00000021540.10|SMAD family member 5 	ENSMUST00000109876.1|Smad5|ENSMUSG00000021540.10|SMAD family member 5
mm10_v2_chr17_+_28952425_28952688	0.0809765	AGUGCAA	ENSMUST00000118762.1|Kctd20|ENSMUSG00000005936.12|potassium channel tetramerisation domain containing 20 	ENSMUST00000057174.8|Kctd20|ENSMUSG00000005936.12|potassium channel tetramerisation domain containing 20 	ENSMUST00000122163.1|Kctd20|ENSMUSG00000005936.12|potassium channel tetramerisation domain containing 20 	ENSMUST00000153831.1|Kctd20|ENSMUSG00000005936.12|potassium channel tetramerisation domain containing 20
mm10_v2_chr8_+_105225145_105225193	0.0782708	AGUGCAA	ENSMUST00000034361.3|D230025D16Rik|ENSMUSG00000031889.3|RIKEN cDNA D230025D16 gene
mm10_v2_chr13_-_64153194_64153207	0.0778618	AGUGCAA	ENSMUST00000059817.4|Zfp367|ENSMUSG00000044934.6|zinc finger protein 367 	ENSMUST00000117241.1|Zfp367|ENSMUSG00000044934.6|zinc finger protein 367
mm10_v2_chr2_+_49451486_49451559	0.077589	AGUGCAA	ENSMUST00000092123.4|Epc2|ENSMUSG00000069495.6|enhancer of polycomb homolog 2 (Drosophila)
mm10_v2_chr17_-_87446854_87446935	0.0768658	AGUGCAA	ENSMUST00000040440.6|Calm2|ENSMUSG00000036438.6|calmodulin 2
mm10_v2_chr11_-_115603866_115604051	0.0758927	AGUGCAA	ENSMUST00000125097.1|Gga3|ENSMUSG00000020740.7|golgi associated, gamma adaptin ear containing, ARF binding protein 3 	ENSMUST00000106508.3|Gga3|ENSMUSG00000020740.7|golgi associated, gamma adaptin ear containing, ARF binding protein 3 	ENSMUST00000019135.7|Gga3|ENSMUSG00000020740.7|golgi associated, gamma adaptin ear containing, ARF binding protein 3
mm10_v2_chr9_-_44881274_44881323	0.0742915	AGUGCAA	ENSMUST00000002095.3|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A 	ENSMUST00000114689.1|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A 	ENSMUST00000128768.1|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A
mm10_v2_chr12_+_70825492_70825514	0.0727814	AGUGCAA	ENSMUST00000057859.7|Frmd6|ENSMUSG00000048285.8|FERM domain containing 6
mm10_v2_chr6_+_47877204_47877204	0.0722815	AGUGCAA	ENSMUST00000061890.7|Zfp282|ENSMUSG00000025821.9|zinc finger protein 282
mm10_v2_chr3_+_152210458_152210534	0.0710824	AGUGCAA	ENSMUST00000166984.1|Fubp1|ENSMUSG00000028034.9|far upstream element (FUSE) binding protein 1 	ENSMUST00000106121.1|Fubp1|ENSMUSG00000028034.9|far upstream element (FUSE) binding protein 1
mm10_v2_chr7_-_105752193_105752234	0.0707763	AGUGCAA	ENSMUST00000033184.4|Tpp1|ENSMUSG00000030894.4|tripeptidyl peptidase I
mm10_v2_chr11_+_7063423_7063496	0.0698177	AGUGCAA	ENSMUST00000020706.4|Adcy1|ENSMUSG00000020431.5|adenylate cyclase 1
mm10_v2_chr2_-_119477613_119477705	0.0693413	AGUGCAA	ENSMUST00000110808.1|Ino80|ENSMUSG00000034154.9|INO80 homolog (S. cerevisiae) 	ENSMUST00000049920.7|Ino80|ENSMUSG00000034154.9|INO80 homolog (S. cerevisiae)
mm10_v2_chr1_-_182341585_182341625	0.0689112	AGUGCAA	ENSMUST00000051431.4|Fbxo28|ENSMUSG00000047539.4|F-box protein 28
mm10_v2_chr12_-_81781121_81781176	0.0677735	AGUGCAA	ENSMUST00000035987.7|Map3k9|ENSMUSG00000042724.7|mitogen-activated protein kinase kinase kinase 9
mm10_v2_chr12_+_3426857_3426931	0.065364	AGUGCAA	ENSMUST00000111215.3|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila) 	ENSMUST00000092003.5|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila) 	ENSMUST00000144247.2|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila) 	ENSMUST00000153102.2|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila)
mm10_v2_chr4_-_141538434_141538525	0.0651413	AGUGCAA	ENSMUST00000078886.3|Spen|ENSMUSG00000040761.10|SPEN homolog, transcriptional regulator (Drosophila)
mm10_v2_chr2_+_28641227_28641262	0.0640834	AGUGCAA	ENSMUST00000028155.5|Tsc1|ENSMUSG00000026812.10|tuberous sclerosis 1 	ENSMUST00000113869.1|Tsc1|ENSMUSG00000026812.10|tuberous sclerosis 1 	ENSMUST00000113867.2|Tsc1|ENSMUSG00000026812.10|tuberous sclerosis 1
mm10_v2_chr17_-_75551838_75551946	0.0618396	AGUGCAA	ENSMUST00000112507.3|Fam98a|ENSMUSG00000002017.9|family with sequence similarity 98, member A
mm10_v2_chr2_+_174110340_174110394	0.0606346	AGUGCAA	ENSMUST00000044415.9|Npepl1|ENSMUSG00000039263.10|aminopeptidase-like 1
mm10_v2_chr5_+_28317121_28317220	0.0595243	AGUGCAA	ENSMUST00000090355.4|Rbm33|ENSMUSG00000048271.8|RNA binding motif protein 33 	ENSMUST00000114884.1|Rbm33|ENSMUSG00000048271.8|RNA binding motif protein 33 	ENSMUST00000059644.6|Rbm33|ENSMUSG00000048271.8|RNA binding motif protein 33 	ENSMUST00000030920.4|Rbm33|ENSMUSG00000048271.8|RNA binding motif protein 33
mm10_v2_chr17_-_66449715_66449759	0.0584795	AGUGCAA	ENSMUST00000086693.5|Soga2|ENSMUSG00000052105.10|SOGA family member 2 	ENSMUST00000097291.3|Soga2|ENSMUSG00000052105.10|SOGA family member 2
mm10_v2_chr3_+_94837533_94837567	0.058158	AGUGCAA	ENSMUST00000107270.2|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain
mm10_v2_chr9_-_65827544_65827576	0.0563365	AGUGCAA	ENSMUST00000159109.1|Zfp609|ENSMUSG00000040524.9|zinc finger protein 609
mm10_v2_chr6_-_145865483_145865558	0.0550476	AGUGCAA	ENSMUST00000032386.4|Bhlhe41|ENSMUSG00000030256.5|basic helix-loop-helix family, member e41
mm10_v2_chr1_-_54194048_54194048	0.0531148	AGUGCAA	ENSMUST00000120904.1|Hecw2|ENSMUSG00000042807.9|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm10_v2_chrX_-_104413825_104413856	0.0515123	AGUGCAA	ENSMUST00000033695.5|Abcb7|ENSMUSG00000031333.7|ATP-binding cassette, sub-family B (MDR/TAP), member 7
mm10_v2_chr1_+_64532790_64532815	0.0490099	AGUGCAA	ENSMUST00000049932.5|Creb1|ENSMUSG00000025958.8|cAMP responsive element binding protein 1 	ENSMUST00000087366.4|Creb1|ENSMUSG00000025958.8|cAMP responsive element binding protein 1 	ENSMUST00000171164.1|Creb1|ENSMUSG00000025958.8|cAMP responsive element binding protein 1
mm10_v2_chrX_+_10717390_10717450	0.0465267	AGUGCAA	ENSMUST00000115524.1|Mid1ip1|ENSMUSG00000008035.6|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish)) 	ENSMUST00000008179.6|Mid1ip1|ENSMUSG00000008035.6|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
mm10_v2_chr19_-_19001099_19001119	0.0452336	AGUGCAA	ENSMUST00000040153.8|Rorb|ENSMUSG00000036192.9|RAR-related orphan receptor beta 	ENSMUST00000112828.1|Rorb|ENSMUSG00000036192.9|RAR-related orphan receptor beta
mm10_v2_chr16_+_16983382_16983416	0.0441182	AGUGCAA	ENSMUST00000069107.7|Mapk1|ENSMUSG00000063358.9|mitogen-activated protein kinase 1 	ENSMUST00000023462.6|Mapk1|ENSMUSG00000063358.9|mitogen-activated protein kinase 1
mm10_v2_chrX_-_51018011_51018032	0.0425346	AGUGCAA	ENSMUST00000053593.7|Rap2c|ENSMUSG00000050029.7|RAP2C, member of RAS oncogene family
mm10_v2_chr11_-_86757483_86757572	0.0422546	AGUGCAA	ENSMUST00000060766.9|Cltc|ENSMUSG00000047126.11|clathrin, heavy polypeptide (Hc) 	ENSMUST00000103186.4|Cltc|ENSMUSG00000047126.11|clathrin, heavy polypeptide (Hc)
mm10_v2_chr13_+_42052015_42052072	0.041859	AGUGCAA	ENSMUST00000060148.5|Hivep1|ENSMUSG00000021366.7|human immunodeficiency virus type I enhancer binding protein 1
mm10_v2_chr17_+_87107621_87107684	0.0417609	AGUGCAA	ENSMUST00000041369.6|Socs5|ENSMUSG00000037104.8|suppressor of cytokine signaling 5
mm10_v2_chrX_+_98149666_98149721	0.0407326	AGUGCAA	ENSMUST00000052837.7|Ar|ENSMUSG00000046532.7|androgen receptor
mm10_v2_chrX_-_108834303_108834381	0.0401027	AGUGCAA	ENSMUST00000101283.3|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3 	ENSMUST00000150434.1|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3
mm10_v2_chr8_+_111536492_111536640	0.0396674	AGUGCAA	ENSMUST00000168428.1|Znrf1|ENSMUSG00000033545.8|zinc and ring finger 1 	ENSMUST00000171182.1|Znrf1|ENSMUSG00000033545.8|zinc and ring finger 1
mm10_v2_chr3_+_96557950_96557968	0.0395717	AGUGCAA	ENSMUST00000074519.6|Txnip|ENSMUSG00000038393.8|thioredoxin interacting protein 	ENSMUST00000049093.7|Txnip|ENSMUSG00000038393.8|thioredoxin interacting protein
mm10_v2_chr15_+_39006272_39006365	0.0389008	AGUGCAA	ENSMUST00000179165.1|Fzd6|ENSMUSG00000022297.8|frizzled homolog 6 (Drosophila) 	ENSMUST00000022906.7|Fzd6|ENSMUSG00000022297.8|frizzled homolog 6 (Drosophila)
mm10_v2_chr1_-_143702832_143702893	0.0373886	AGUGCAA	ENSMUST00000018337.7|Cdc73|ENSMUSG00000026361.7|cell division cycle 73, Paf1/RNA polymerase II complex component
mm10_v2_chr12_-_102878406_102878449	0.0372719	AGUGCAA	ENSMUST00000045652.6|Btbd7|ENSMUSG00000041702.6|BTB (POZ) domain containing 7
mm10_v2_chr11_-_28584260_28584324	0.0369968	AGUGCAA	ENSMUST00000093253.3|Ccdc85a|ENSMUSG00000032878.10|coiled-coil domain containing 85A 	ENSMUST00000109502.2|Ccdc85a|ENSMUSG00000032878.10|coiled-coil domain containing 85A 	ENSMUST00000042534.8|Ccdc85a|ENSMUSG00000032878.10|coiled-coil domain containing 85A
mm10_v2_chr18_-_73703739_73703806	0.0364824	AGUGCAA	ENSMUST00000025393.7|Smad4|ENSMUSG00000024515.7|SMAD family member 4
mm10_v2_chr6_-_71440623_71440645	0.0361552	AGUGCAA	ENSMUST00000002292.8|Rmnd5a|ENSMUSG00000002222.8|required for meiotic nuclear division 5 homolog A (S. cerevisiae)
mm10_v2_chrX_-_56598069_56598107	0.0348407	AGUGCAA	ENSMUST00000059899.2|Mmgt1|ENSMUSG00000061273.3|membrane magnesium transporter 1
mm10_v2_chr13_-_56252163_56252181	0.033975	AGUGCAA	ENSMUST00000058475.4|Neurog1|ENSMUSG00000048904.4|neurogenin 1
mm10_v2_chr10_-_116581478_116581511	0.0300811	AGUGCAA	ENSMUST00000105267.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000105265.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000167706.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000168036.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000169921.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000020374.5|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2
mm10_v2_chr6_-_129275360_129275376	0.0273064	AGUGCAA	ENSMUST00000032259.3|Cd69|ENSMUSG00000030156.3|CD69 antigen
mm10_v2_chr4_-_108833608_108833626	0.0271155	AGUGCAA	ENSMUST00000102742.4|Btf3l4|ENSMUSG00000028568.10|basic transcription factor 3-like 4
mm10_v2_chr14_-_45388772_45388836	0.0265212	AGUGCAA	ENSMUST00000046191.7|Gnpnat1|ENSMUSG00000037722.7|glucosamine-phosphate N-acetyltransferase 1
mm10_v2_chr4_+_116720920_116721004	0.0261299	AGUGCAA	ENSMUST00000045542.6|Tesk2|ENSMUSG00000033985.11|testis-specific kinase 2 	ENSMUST00000106459.1|Tesk2|ENSMUSG00000033985.11|testis-specific kinase 2
mm10_v2_chr19_+_41482632_41482688	0.0248517	AGUGCAA	ENSMUST00000067795.5|Lcor|ENSMUSG00000025019.9|ligand dependent nuclear receptor corepressor
mm10_v2_chr9_-_52168111_52168111	0.024793	AGUGCAA	ENSMUST00000165519.1|Zc3h12c|ENSMUSG00000035164.7|zinc finger CCCH type containing 12C
mm10_v2_chr10_-_17947997_17948098	0.0240007	AGUGCAA	ENSMUST00000037879.6|Heca|ENSMUSG00000039879.8|headcase homolog (Drosophila)
mm10_v2_chr2_+_91457501_91457549	0.023067	AGUGCAA	ENSMUST00000028689.3|Lrp4|ENSMUSG00000027253.9|low density lipoprotein receptor-related protein 4
mm10_v2_chr13_+_55693082_55693151	0.0223096	AGUGCAA	ENSMUST00000057844.8|B230219D22Rik|ENSMUSG00000045767.8|RIKEN cDNA B230219D22 gene
mm10_v2_chr1_+_12692430_12692485	0.0222339	AGUGCAA	ENSMUST00000180062.1|Sulf1|ENSMUSG00000016918.9|sulfatase 1 	ENSMUST00000177608.1|Sulf1|ENSMUSG00000016918.9|sulfatase 1
mm10_v2_chr10_-_8886033_8886076	0.021736	AGUGCAA	ENSMUST00000015449.5|Sash1|ENSMUSG00000015305.5|SAM and SH3 domain containing 1
mm10_v2_chr11_-_118355496_118355506	0.0212888	AGUGCAA	ENSMUST00000017610.3|Timp2|ENSMUSG00000017466.3|tissue inhibitor of metalloproteinase 2
mm10_v2_chr1_+_105663855_105663866	0.0195762	AGUGCAA	ENSMUST00000086721.3|2310035C23Rik|ENSMUSG00000026319.7|RIKEN cDNA 2310035C23 gene 	ENSMUST00000039173.6|2310035C23Rik|ENSMUSG00000026319.7|RIKEN cDNA 2310035C23 gene
mm10_v2_chr4_-_82505749_82505802	0.0191538	AGUGCAA	ENSMUST00000107245.2|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000107246.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr18_-_53744509_53744629	0.0187367	AGUGCAA	ENSMUST00000049811.6|Cep120|ENSMUSG00000048799.7|centrosomal protein 120
mm10_v2_chr10_-_67285180_67285316	0.0175806	AGUGCAA	ENSMUST00000159002.1|Nrbf2|ENSMUSG00000075000.5|nuclear receptor binding factor 2 	ENSMUST00000077839.6|Nrbf2|ENSMUSG00000075000.5|nuclear receptor binding factor 2
mm10_v2_chr12_-_46818749_46818788	0.0158554	AGUGCAA	ENSMUST00000021438.6|Nova1|ENSMUSG00000021047.6|neuro-oncological ventral antigen 1
mm10_v2_chr15_-_81858317_81858328	0.0147434	AGUGCAA	ENSMUST00000050467.7|Tob2|ENSMUSG00000048546.7|transducer of ERBB2, 2
mm10_v2_chr10_+_128411616_128411676	0.0143389	AGUGCAA	ENSMUST00000096386.5|Rnf41|ENSMUSG00000025373.7|ring finger protein 41 	ENSMUST00000171342.1|Rnf41|ENSMUSG00000025373.7|ring finger protein 41
mm10_v2_chr4_+_47353222_47353265	0.0141679	AGUGCAA	ENSMUST00000007757.8|Tgfbr1|ENSMUSG00000007613.9|transforming growth factor, beta receptor I
mm10_v2_chr15_-_39943689_39943788	0.0139656	AGUGCAA	ENSMUST00000022916.5|Lrp12|ENSMUSG00000022305.6|low density lipoprotein-related protein 12
mm10_v2_chr17_-_33718591_33718690	0.0135891	AGUGCAA	ENSMUST00000174040.1|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2 	ENSMUST00000173015.1|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2 	ENSMUST00000066121.6|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2 	ENSMUST00000172767.1|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2 	ENSMUST00000173329.1|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2
mm10_v2_chr6_+_117168535_117168584	0.0124061	AGUGCAA	ENSMUST00000112866.1|Cxcl12|ENSMUSG00000061353.5|chemokine (C-X-C motif) ligand 12 	ENSMUST00000112871.1|Cxcl12|ENSMUSG00000061353.5|chemokine (C-X-C motif) ligand 12 	ENSMUST00000073043.4|Cxcl12|ENSMUSG00000061353.5|chemokine (C-X-C motif) ligand 12
mm10_v2_chrX_+_112604274_112604274	0.0123754	AGUGCAA	ENSMUST00000071814.6|Zfp711|ENSMUSG00000025529.8|zinc finger protein 711
mm10_v2_chr13_-_93192270_93192328	0.0113699	AGUGCAA	ENSMUST00000048702.5|Papd4|ENSMUSG00000042167.5|PAP associated domain containing 4
mm10_v2_chr6_-_97205549_97205642	0.0104975	AGUGCAA	ENSMUST00000164744.1|Uba3|ENSMUSG00000030061.10|ubiquitin-like modifier activating enzyme 3 	ENSMUST00000089287.5|Uba3|ENSMUSG00000030061.10|ubiquitin-like modifier activating enzyme 3
mm10_v2_chr17_+_14279506_14279513	0.0104381	AGUGCAA	ENSMUST00000024660.8|Smoc2|ENSMUSG00000023886.9|SPARC related modular calcium binding 2
mm10_v2_chr2_-_167349167_167349249	0.0103702	AGUGCAA	ENSMUST00000109221.2|B4galt5|ENSMUSG00000017929.7|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5
mm10_v2_chr3_-_152340350_152340416	0.00970541	AGUGCAA	ENSMUST00000073089.6|Fam73a|ENSMUSG00000054942.7|family with sequence similarity 73, member A 	ENSMUST00000068243.6|Fam73a|ENSMUSG00000054942.7|family with sequence similarity 73, member A
mm10_v2_chr2_+_117121374_117121374	0.00950038	AGUGCAA	ENSMUST00000028829.6|Spred1|ENSMUSG00000027351.8|sprouty protein with EVH-1 domain 1, related sequence
mm10_v2_chr14_-_122465677_122465677	0.00860065	AGUGCAA	ENSMUST00000039118.6|Zic5|ENSMUSG00000041703.7|zinc finger protein of the cerebellum 5
mm10_v2_chr5_-_30155101_30155162	0.00813272	AGUGCAA	ENSMUST00000156859.1|Hadha|ENSMUSG00000025745.5|hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit
mm10_v2_chr10_+_20148920_20149014	0.00770778	AGUGCAA	ENSMUST00000116259.3|Map7|ENSMUSG00000019996.10|microtubule-associated protein 7
mm10_v2_chr19_+_7417586_7417650	0.00734886	AGUGCAA	ENSMUST00000159348.1|2700081O15Rik|ENSMUSG00000053080.9|RIKEN cDNA 2700081O15 gene
mm10_v2_chr12_-_69681795_69681869	0.00465837	AGUGCAA	ENSMUST00000183277.1|Sos2|ENSMUSG00000034801.7|son of sevenless homolog 2 (Drosophila) 	ENSMUST00000035773.7|Sos2|ENSMUSG00000034801.7|son of sevenless homolog 2 (Drosophila)
mm10_v2_chr3_-_107333289_107333289	0.00433724	AGUGCAA	ENSMUST00000061772.9|Rbm15|ENSMUSG00000048109.9|RNA binding motif protein 15
mm10_v2_chr13_+_64161862_64161910	0.00432545	AGUGCAA	ENSMUST00000021929.8|Habp4|ENSMUSG00000021476.8|hyaluronic acid binding protein 4
mm10_v2_chr16_-_50432340_50432409	0.00334481	AGUGCAA	ENSMUST00000066037.6|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089399.4|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089404.3|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000114477.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000138166.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila)
mm10_v2_chr8_-_36613937_36613948	0.00185108	AGUGCAA	ENSMUST00000033923.7|Dlc1|ENSMUSG00000031523.10|deleted in liver cancer 1
mm10_v2_chr1_-_30949756_30949770	0.000304528	AGUGCAA	ENSMUST00000076587.3|Ptp4a1|ENSMUSG00000026064.9|protein tyrosine phosphatase 4a1 	ENSMUST00000027232.7|Ptp4a1|ENSMUSG00000026064.9|protein tyrosine phosphatase 4a1
