mm10_v2_chr13_-_34345174_34345273	0.638934	AUGGCAC	ENSMUST00000040336.5|Slc22a23|ENSMUSG00000038267.8|solute carrier family 22, member 23
mm10_v2_chr5_-_131616599_131616611	0.42862	AUGGCAC	ENSMUST00000161804.1|Auts2|ENSMUSG00000029673.11|autism susceptibility candidate 2
mm10_v2_chr19_+_16956110_16956124	0.423206	AUGGCAC	ENSMUST00000087689.4|Prune2|ENSMUSG00000039126.9|prune homolog 2 (Drosophila)
mm10_v2_chr14_-_108914237_108914257	0.411726	AUGGCAC	ENSMUST00000100322.2|Slitrk1|ENSMUSG00000075478.2|SLIT and NTRK-like family, member 1
mm10_v2_chr15_+_54571358_54571439	0.390982	AUGGCAC	ENSMUST00000025356.2|Mal2|ENSMUSG00000024479.2|mal, T cell differentiation protein 2
mm10_v2_chr5_-_65492984_65493051	0.373978	AUGGCAC	ENSMUST00000139122.1|Smim14|ENSMUSG00000037822.6|small integral membrane protein 14
mm10_v2_chr4_-_48279544_48279613	0.366172	AUGGCAC	ENSMUST00000030028.4|Erp44|ENSMUSG00000028343.4|endoplasmic reticulum protein 44
mm10_v2_chr4_+_43058939_43058969	0.341935	AUGGCAC	ENSMUST00000079978.6|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans)
mm10_v2_chr18_-_61536522_61536558	0.332584	AUGGCAC	ENSMUST00000171629.1|Arhgef37|ENSMUSG00000045094.7|Rho guanine nucleotide exchange factor (GEF) 37
mm10_v2_chr8_-_111876661_111876725	0.319534	AUGGCAC	ENSMUST00000034431.1|Tmem170|ENSMUSG00000031953.1|transmembrane protein 170
mm10_v2_chr14_+_58070547_58070547	0.309124	AUGGCAC	ENSMUST00000165526.1|Fgf9|ENSMUSG00000021974.8|fibroblast growth factor 9
mm10_v2_chr9_+_59578192_59578337	0.279308	AUGGCAC	ENSMUST00000118549.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6 	ENSMUST00000034840.3|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6
mm10_v2_chr12_+_71831064_71831178	0.264869	AUGGCAC	ENSMUST00000085299.2|Daam1|ENSMUSG00000034574.9|dishevelled associated activator of morphogenesis 1
mm10_v2_chr11_-_108343917_108343941	0.26322	AUGGCAC	ENSMUST00000059595.4|Prkca|ENSMUSG00000050965.8|protein kinase C, alpha
mm10_v2_chr17_-_56717681_56717709	0.257976	AUGGCAC	ENSMUST00000164907.1|Vmac|ENSMUSG00000054723.5|vimentin-type intermediate filament associated coiled-coil protein
mm10_v2_chr1_+_74391479_74391509	0.250069	AUGGCAC	ENSMUST00000027367.7|Ctdsp1|ENSMUSG00000026176.7|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
mm10_v2_chr9_+_46012810_46012821	0.246699	AUGGCAC	ENSMUST00000126865.1|Sik3|ENSMUSG00000034135.8|SIK family kinase 3
mm10_v2_chr17_-_6782775_6782784	0.24062	AUGGCAC	ENSMUST00000064234.6|Ezr|ENSMUSG00000052397.8|ezrin
mm10_v2_chr14_-_65425453_65425472	0.233192	AUGGCAC	ENSMUST00000059339.5|Pnoc|ENSMUSG00000045731.5|prepronociceptin
mm10_v2_chr7_-_99858872_99858906	0.222808	AUGGCAC	ENSMUST00000036274.6|Spcs2|ENSMUSG00000035227.6|signal peptidase complex subunit 2 homolog (S. cerevisiae)
mm10_v2_chr9_+_68653761_68653786	0.22241	AUGGCAC	ENSMUST00000034766.7|Rora|ENSMUSG00000032238.11|RAR-related orphan receptor alpha
mm10_v2_chr3_-_58525867_58525873	0.219702	AUGGCAC	ENSMUST00000029385.7|Serp1|ENSMUSG00000027808.7|stress-associated endoplasmic reticulum protein 1
mm10_v2_chr17_+_72836678_72836717	0.209189	AUGGCAC	ENSMUST00000045174.5|Ypel5|ENSMUSG00000039770.5|yippee-like 5 (Drosophila)
mm10_v2_chr15_+_34453285_34453312	0.199589	AUGGCAC	ENSMUST00000060894.7|BC030476|ENSMUSG00000044726.7|cDNA sequence BC030476
mm10_v2_chr1_-_13589717_13589904	0.192938	AUGGCAC	ENSMUST00000027068.4|Tram1|ENSMUSG00000025935.4|translocating chain-associating membrane protein 1
mm10_v2_chr3_-_27710413_27710467	0.191475	AUGGCAC	ENSMUST00000046157.4|Fndc3b|ENSMUSG00000039286.7|fibronectin type III domain containing 3B
mm10_v2_chrX_-_143933204_143933311	0.18534	AUGGCAC	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr2_-_114013619_114013638	0.178858	AUGGCAC	ENSMUST00000090275.4|Gjd2|ENSMUSG00000068615.4|gap junction protein, delta 2
mm10_v2_chr10_-_109010955_109010983	0.172349	AUGGCAC	ENSMUST00000105276.1|Syt1|ENSMUSG00000035864.8|synaptotagmin I 	ENSMUST00000064054.7|Syt1|ENSMUSG00000035864.8|synaptotagmin I
mm10_v2_chr12_+_53248677_53248677	0.169178	AUGGCAC	ENSMUST00000101432.2|Npas3|ENSMUSG00000021010.7|neuronal PAS domain protein 3
mm10_v2_chr3_-_84304762_84304809	0.168474	AUGGCAC	ENSMUST00000107692.1|Trim2|ENSMUSG00000027993.10|tripartite motif-containing 2
mm10_v2_chr16_-_74411292_74411430	0.157374	AUGGCAC	ENSMUST00000117200.1|Robo2|ENSMUSG00000052516.11|roundabout homolog 2 (Drosophila)
mm10_v2_chr19_+_55742242_55742468	0.155317	AUGGCAC	ENSMUST00000111652.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000111649.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000111651.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000111653.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000111656.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000127233.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000153888.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr12_-_91849081_91849157	0.155089	AUGGCAC	ENSMUST00000167466.1|Sel1l|ENSMUSG00000020964.8|sel-1 suppressor of lin-12-like (C. elegans) 	ENSMUST00000021347.5|Sel1l|ENSMUSG00000020964.8|sel-1 suppressor of lin-12-like (C. elegans) 	ENSMUST00000178462.1|Sel1l|ENSMUSG00000020964.8|sel-1 suppressor of lin-12-like (C. elegans)
mm10_v2_chr4_-_3938354_3938401	0.152792	AUGGCAC	ENSMUST00000003369.3|Plag1|ENSMUSG00000003282.3|pleiomorphic adenoma gene 1
mm10_v2_chr5_-_149636331_149636376	0.146422	AUGGCAC	ENSMUST00000074846.7|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000110498.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000127977.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000132412.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1
mm10_v2_chr3_-_57847478_57847610	0.142351	AUGGCAC	ENSMUST00000120289.1|Pfn2|ENSMUSG00000027805.10|profilin 2 	ENSMUST00000066882.8|Pfn2|ENSMUSG00000027805.10|profilin 2
mm10_v2_chr18_+_21001292_21001341	0.14001	AUGGCAC	ENSMUST00000072847.5|Rnf138|ENSMUSG00000024317.8|ring finger protein 138 	ENSMUST00000052396.5|Rnf138|ENSMUSG00000024317.8|ring finger protein 138
mm10_v2_chr6_-_13839916_13839942	0.138334	AUGGCAC	ENSMUST00000060442.7|Gpr85|ENSMUSG00000048216.7|G protein-coupled receptor 85
mm10_v2_chr10_+_111164794_111164811	0.137761	AUGGCAC	ENSMUST00000105275.1|Osbpl8|ENSMUSG00000020189.7|oxysterol binding protein-like 8 	ENSMUST00000095310.1|Osbpl8|ENSMUSG00000020189.7|oxysterol binding protein-like 8
mm10_v2_chr3_-_41082992_41083046	0.134494	AUGGCAC	ENSMUST00000058578.7|Pgrmc2|ENSMUSG00000049940.7|progesterone receptor membrane component 2
mm10_v2_chr18_+_37725706_37725754	0.131503	AUGGCAC	ENSMUST00000066149.6|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr12_+_35047180_35047230	0.130217	AUGGCAC	ENSMUST00000048519.9|Snx13|ENSMUSG00000020590.9|sorting nexin 13 	ENSMUST00000163677.1|Snx13|ENSMUSG00000020590.9|sorting nexin 13
mm10_v2_chr9_-_86571775_86571847	0.127792	AUGGCAC	ENSMUST00000070064.4|Pgm3|ENSMUSG00000056131.7|phosphoglucomutase 3 	ENSMUST00000072585.6|Pgm3|ENSMUSG00000056131.7|phosphoglucomutase 3
mm10_v2_chr12_-_84773087_84773112	0.127314	AUGGCAC	ENSMUST00000021668.8|Npc2|ENSMUSG00000021242.8|Niemann Pick type C2
mm10_v2_chr13_-_17944151_17944239	0.12646	AUGGCAC	ENSMUST00000009003.7|Rala|ENSMUSG00000008859.7|v-ral simian leukemia viral oncogene homolog A (ras related)
mm10_v2_chr1_-_182019927_182019989	0.125345	AUGGCAC	ENSMUST00000078719.6|Enah|ENSMUSG00000022995.10|enabled homolog (Drosophila) 	ENSMUST00000111030.3|Enah|ENSMUSG00000022995.10|enabled homolog (Drosophila) 	ENSMUST00000177811.1|Enah|ENSMUSG00000022995.10|enabled homolog (Drosophila) 	ENSMUST00000111024.3|Enah|ENSMUSG00000022995.10|enabled homolog (Drosophila) 	ENSMUST00000111025.2|Enah|ENSMUSG00000022995.10|enabled homolog (Drosophila)
mm10_v2_chr11_-_51857624_51857686	0.123475	AUGGCAC	ENSMUST00000020655.7|Phf15|ENSMUSG00000020387.9|PHD finger protein 15 	ENSMUST00000109090.1|Phf15|ENSMUSG00000020387.9|PHD finger protein 15
mm10_v2_chr9_+_118926453_118926568	0.122577	AUGGCAC	ENSMUST00000073109.5|Ctdspl|ENSMUSG00000047409.7|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
mm10_v2_chr4_-_153482768_153482811	0.12132	AUGGCAC	ENSMUST00000105646.2|Ajap1|ENSMUSG00000039546.9|adherens junction associated protein 1
mm10_v2_chr2_-_64097994_64098023	0.111037	AUGGCAC	ENSMUST00000131615.2|Fign|ENSMUSG00000075324.7|fidgetin
mm10_v2_chr13_+_37826225_37826315	0.109923	AUGGCAC	ENSMUST00000128570.1|Rreb1|ENSMUSG00000039087.10|ras responsive element binding protein 1
mm10_v2_chr7_-_81454751_81454764	0.1083	AUGGCAC	ENSMUST00000098331.3|Cpeb1|ENSMUSG00000025586.10|cytoplasmic polyadenylation element binding protein 1 	ENSMUST00000178892.1|Cpeb1|ENSMUSG00000025586.10|cytoplasmic polyadenylation element binding protein 1
mm10_v2_chr1_-_82291370_82291416	0.10768	AUGGCAC	ENSMUST00000069799.2|Irs1|ENSMUSG00000055980.2|insulin receptor substrate 1
mm10_v2_chr8_-_17535251_17535390	0.106491	AUGGCAC	ENSMUST00000082104.6|Csmd1|ENSMUSG00000060924.8|CUB and Sushi multiple domains 1
mm10_v2_chr15_+_4375462_4375511	0.105265	AUGGCAC	ENSMUST00000061925.4|Plcxd3|ENSMUSG00000049148.8|phosphatidylinositol-specific phospholipase C, X domain containing 3
mm10_v2_chr11_-_96824008_96824159	0.104752	AUGGCAC	ENSMUST00000142065.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000167110.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000169828.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000126949.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1
mm10_v2_chr16_+_8830093_8830104	0.0991751	AUGGCAC	ENSMUST00000023150.5|1810013L24Rik|ENSMUSG00000022507.5|RIKEN cDNA 1810013L24 gene
mm10_v2_chr18_-_46597480_46597543	0.0963787	AUGGCAC	ENSMUST00000151189.1|Tmed7|ENSMUSG00000033184.8|transmembrane emp24 protein transport domain containing 7
mm10_v2_chr14_+_60265189_60265215	0.0961556	AUGGCAC	ENSMUST00000022563.7|Mtmr6|ENSMUSG00000021987.8|myotubularin related protein 6
mm10_v2_chr1_+_184034381_184034437	0.0942667	AUGGCAC	ENSMUST00000048655.7|Dusp10|ENSMUSG00000039384.8|dual specificity phosphatase 10
mm10_v2_chr2_-_23572038_23572112	0.0923384	AUGGCAC	ENSMUST00000132484.1|Spopl|ENSMUSG00000026771.8|speckle-type POZ protein-like
mm10_v2_chr2_+_48814109_48814173	0.0887138	AUGGCAC	ENSMUST00000063886.3|Acvr2a|ENSMUSG00000052155.5|activin receptor IIA
mm10_v2_chr2_-_80581234_80581266	0.0866117	AUGGCAC	ENSMUST00000028386.5|Nckap1|ENSMUSG00000027002.7|NCK-associated protein 1
mm10_v2_chr1_-_174921813_174921827	0.0864675	AUGGCAC	ENSMUST00000055294.3|Grem2|ENSMUSG00000050069.3|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)
mm10_v2_chr6_-_134566913_134566995	0.0862356	AUGGCAC	ENSMUST00000032322.8|Lrp6|ENSMUSG00000030201.9|low density lipoprotein receptor-related protein 6
mm10_v2_chr14_-_21052420_21052450	0.0850878	AUGGCAC	ENSMUST00000154460.1|Ap3m1|ENSMUSG00000021824.6|adaptor-related protein complex 3, mu 1 subunit
mm10_v2_chr16_-_46496955_46496986	0.0845591	AUGGCAC	ENSMUST00000023335.6|Pvrl3|ENSMUSG00000022656.9|poliovirus receptor-related 3 	ENSMUST00000023334.8|Pvrl3|ENSMUSG00000022656.9|poliovirus receptor-related 3
mm10_v2_chr1_+_43445736_43445830	0.0843041	AUGGCAC	ENSMUST00000086421.5|Nck2|ENSMUSG00000066877.5|non-catalytic region of tyrosine kinase adaptor protein 2 	ENSMUST00000114744.1|Nck2|ENSMUSG00000066877.5|non-catalytic region of tyrosine kinase adaptor protein 2
mm10_v2_chr3_+_157947414_157947510	0.0835683	AUGGCAC	ENSMUST00000164582.1|Ankrd13c|ENSMUSG00000039988.8|ankyrin repeat domain 13c 	ENSMUST00000040787.8|Ankrd13c|ENSMUSG00000039988.8|ankyrin repeat domain 13c
mm10_v2_chr5_+_14025305_14025327	0.0829801	AUGGCAC	ENSMUST00000073957.6|Sema3e|ENSMUSG00000063531.6|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
mm10_v2_chr3_+_60501252_60501275	0.0810497	AUGGCAC	ENSMUST00000099087.2|Mbnl1|ENSMUSG00000027763.8|muscleblind-like 1 (Drosophila)
mm10_v2_chr3_+_146499850_146499890	0.0799831	AUGGCAC	ENSMUST00000118280.1|Gng5|ENSMUSG00000068523.6|guanine nucleotide binding protein (G protein), gamma 5
mm10_v2_chr17_-_17624458_17624496	0.07884	AUGGCAC	ENSMUST00000041047.2|Lnpep|ENSMUSG00000023845.6|leucyl/cystinyl aminopeptidase
mm10_v2_chr9_-_66124872_66124886	0.0786445	AUGGCAC	ENSMUST00000034946.8|Snx1|ENSMUSG00000032382.8|sorting nexin 1
mm10_v2_chr10_+_96616998_96617015	0.0774717	AUGGCAC	ENSMUST00000038377.7|Btg1|ENSMUSG00000036478.7|B cell translocation gene 1, anti-proliferative
mm10_v2_chr8_-_60983215_60983319	0.076554	AUGGCAC	ENSMUST00000004430.7|Clcn3|ENSMUSG00000004319.9|chloride channel 3 	ENSMUST00000110301.1|Clcn3|ENSMUSG00000004319.9|chloride channel 3 	ENSMUST00000093490.2|Clcn3|ENSMUSG00000004319.9|chloride channel 3
mm10_v2_chr9_+_65032413_65032466	0.0754404	AUGGCAC	ENSMUST00000034960.6|Dpp8|ENSMUSG00000032393.8|dipeptidylpeptidase 8
mm10_v2_chr9_-_66919646_66919710	0.0723582	AUGGCAC	ENSMUST00000041139.7|Rab8b|ENSMUSG00000036943.8|RAB8B, member RAS oncogene family
mm10_v2_chr3_+_52268337_52268388	0.0720383	AUGGCAC	ENSMUST00000053764.5|Foxo1|ENSMUSG00000044167.5|forkhead box O1
mm10_v2_chr17_-_64331817_64331957	0.0708865	AUGGCAC	ENSMUST00000172733.1|Pja2|ENSMUSG00000024083.9|praja 2, RING-H2 motif containing 	ENSMUST00000172818.1|Pja2|ENSMUSG00000024083.9|praja 2, RING-H2 motif containing
mm10_v2_chr6_+_8259379_8259460	0.0708191	AUGGCAC	ENSMUST00000162034.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039 	ENSMUST00000160705.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039 	ENSMUST00000159433.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039
mm10_v2_chr3_+_59006978_59006978	0.0706417	AUGGCAC	ENSMUST00000040325.7|Med12l|ENSMUSG00000056476.7|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like 	ENSMUST00000164225.1|Med12l|ENSMUSG00000056476.7|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like 	ENSMUST00000040846.8|Med12l|ENSMUSG00000056476.7|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like 	ENSMUST00000029393.8|Med12l|ENSMUSG00000056476.7|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like
mm10_v2_chr8_+_9977707_9977725	0.0705962	AUGGCAC	ENSMUST00000139793.1|Abhd13|ENSMUSG00000040396.6|abhydrolase domain containing 13 	ENSMUST00000048216.5|Abhd13|ENSMUSG00000040396.6|abhydrolase domain containing 13
mm10_v2_chr8_+_33599608_33599655	0.0676914	AUGGCAC	ENSMUST00000009774.9|Ppp2cb|ENSMUSG00000009630.9|protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform
mm10_v2_chr15_+_40655020_40655054	0.0659197	AUGGCAC	ENSMUST00000053467.4|Zfpm2|ENSMUSG00000022306.8|zinc finger protein, multitype 2
mm10_v2_chr11_+_80477015_80477085	0.0647283	AUGGCAC	ENSMUST00000053413.10|Cdk5r1|ENSMUSG00000048895.12|cyclin-dependent kinase 5, regulatory subunit 1 (p35) 	ENSMUST00000147694.1|Cdk5r1|ENSMUSG00000048895.12|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm10_v2_chr16_-_9994921_9995012	0.0643131	AUGGCAC	ENSMUST00000115835.1|Grin2a|ENSMUSG00000059003.6|glutamate receptor, ionotropic, NMDA2A (epsilon 1)
mm10_v2_chr6_-_127151044_127151055	0.0641536	AUGGCAC	ENSMUST00000000188.8|Ccnd2|ENSMUSG00000000184.9|cyclin D2
mm10_v2_chr1_+_163929765_163929809	0.0632807	AUGGCAC	ENSMUST00000027876.4|Scyl3|ENSMUSG00000026584.8|SCY1-like 3 (S. cerevisiae) 	ENSMUST00000170359.1|Scyl3|ENSMUSG00000026584.8|SCY1-like 3 (S. cerevisiae)
mm10_v2_chr1_-_98095596_98095648	0.0618984	AUGGCAC	ENSMUST00000058762.8|Pam|ENSMUSG00000026335.10|peptidylglycine alpha-amidating monooxygenase 	ENSMUST00000097625.3|Pam|ENSMUSG00000026335.10|peptidylglycine alpha-amidating monooxygenase
mm10_v2_chr2_+_130906461_130906500	0.0609204	AUGGCAC	ENSMUST00000028781.8|Atrn|ENSMUSG00000027312.8|attractin
mm10_v2_chr11_-_53423123_53423170	0.0603365	AUGGCAC	ENSMUST00000036045.5|Leap2|ENSMUSG00000036216.5|liver-expressed antimicrobial peptide 2
mm10_v2_chr11_-_86357570_86357614	0.0594793	AUGGCAC	ENSMUST00000043624.8|Med13|ENSMUSG00000034297.8|mediator complex subunit 13
mm10_v2_chr2_+_76675265_76675287	0.0573554	AUGGCAC	ENSMUST00000111920.1|Plekha3|ENSMUSG00000002733.8|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3
mm10_v2_chr4_+_57434247_57434368	0.0570841	AUGGCAC	ENSMUST00000102905.1|Palm2|ENSMUSG00000090053.3|paralemmin 2
mm10_v2_chr2_+_96318014_96318216	0.0564325	AUGGCAC	ENSMUST00000135431.1|Lrrc4c|ENSMUSG00000050587.8|leucine rich repeat containing 4C 	ENSMUST00000162807.2|Lrrc4c|ENSMUSG00000050587.8|leucine rich repeat containing 4C
mm10_v2_chr11_-_88718223_88718294	0.0543557	AUGGCAC	ENSMUST00000107909.1|Msi2|ENSMUSG00000069769.7|musashi RNA-binding protein 2
mm10_v2_chr1_-_77515048_77515102	0.0536715	AUGGCAC	ENSMUST00000027451.6|Epha4|ENSMUSG00000026235.8|Eph receptor A4
mm10_v2_chr13_-_103920508_103920572	0.052691	AUGGCAC	ENSMUST00000053927.5|Erbb2ip|ENSMUSG00000021709.8|Erbb2 interacting protein 	ENSMUST00000091269.4|Erbb2ip|ENSMUSG00000021709.8|Erbb2 interacting protein 	ENSMUST00000022222.5|Erbb2ip|ENSMUSG00000021709.8|Erbb2 interacting protein
mm10_v2_chr18_+_32163073_32163115	0.0520721	AUGGCAC	ENSMUST00000096575.3|Map3k2|ENSMUSG00000024383.8|mitogen-activated protein kinase kinase kinase 2
mm10_v2_chr5_-_34187670_34187749	0.0517682	AUGGCAC	ENSMUST00000042701.6|Mxd4|ENSMUSG00000037235.7|Max dimerization protein 4 	ENSMUST00000119171.1|Mxd4|ENSMUSG00000037235.7|Max dimerization protein 4
mm10_v2_chr10_-_76345254_76345371	0.0517183	AUGGCAC	ENSMUST00000036033.7|Dip2a|ENSMUSG00000020231.9|DIP2 disco-interacting protein 2 homolog A (Drosophila) 	ENSMUST00000160048.1|Dip2a|ENSMUSG00000020231.9|DIP2 disco-interacting protein 2 homolog A (Drosophila) 	ENSMUST00000105417.3|Dip2a|ENSMUSG00000020231.9|DIP2 disco-interacting protein 2 homolog A (Drosophila)
mm10_v2_chr14_+_45351473_45351473	0.0504738	AUGGCAC	ENSMUST00000111835.2|Styx|ENSMUSG00000053205.8|serine/threonine/tyrosine interaction protein
mm10_v2_chr11_-_89418948_89418948	0.0500538	AUGGCAC	ENSMUST00000050983.1|4932411E22Rik|ENSMUSG00000047490.1|RIKEN cDNA 4932411E22 gene
mm10_v2_chr3_-_69127098_69127113	0.0496615	AUGGCAC	ENSMUST00000029353.2|Kpna4|ENSMUSG00000027782.4|karyopherin (importin) alpha 4
mm10_v2_chr9_+_56041857_56041880	0.0485389	AUGGCAC	ENSMUST00000114276.2|Rcn2|ENSMUSG00000032320.7|reticulocalbin 2
mm10_v2_chr5_+_130448801_130448830	0.0480946	AUGGCAC	ENSMUST00000111288.2|Caln1|ENSMUSG00000060371.6|calneuron 1
mm10_v2_chr9_-_114026711_114026764	0.0480153	AUGGCAC	ENSMUST00000117537.1|Fbxl2|ENSMUSG00000032507.9|F-box and leucine-rich repeat protein 2 	ENSMUST00000035090.7|Fbxl2|ENSMUSG00000032507.9|F-box and leucine-rich repeat protein 2
mm10_v2_chr6_+_72355425_72355487	0.0478027	AUGGCAC	ENSMUST00000069695.2|Tmem150a|ENSMUSG00000055912.2|transmembrane protein 150A 	ENSMUST00000132243.1|Tmem150a|ENSMUSG00000055912.2|transmembrane protein 150A
mm10_v2_chr7_-_34654342_34654398	0.0475496	AUGGCAC	ENSMUST00000108069.1|Kctd15|ENSMUSG00000030499.3|potassium channel tetramerisation domain containing 15
mm10_v2_chr5_+_43233463_43233491	0.0466006	AUGGCAC	ENSMUST00000169035.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2 	ENSMUST00000166713.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2
mm10_v2_chr11_-_96977660_96977711	0.046531	AUGGCAC	ENSMUST00000107626.1|Sp2|ENSMUSG00000018678.6|Sp2 transcription factor 	ENSMUST00000107624.1|Sp2|ENSMUSG00000018678.6|Sp2 transcription factor
mm10_v2_chrX_+_58030622_58030643	0.0461413	AUGGCAC	ENSMUST00000088627.4|Zic3|ENSMUSG00000067860.5|zinc finger protein of the cerebellum 3
mm10_v2_chr16_-_17891593_17891700	0.0454558	AUGGCAC	ENSMUST00000117082.1|Dgcr2|ENSMUSG00000003166.13|DiGeorge syndrome critical region gene 2 	ENSMUST00000066127.6|Dgcr2|ENSMUSG00000003166.13|DiGeorge syndrome critical region gene 2 	ENSMUST00000117945.1|Dgcr2|ENSMUSG00000003166.13|DiGeorge syndrome critical region gene 2 	ENSMUST00000012152.6|Dgcr2|ENSMUSG00000003166.13|DiGeorge syndrome critical region gene 2
mm10_v2_chrX_+_159255782_159255899	0.0434763	AUGGCAC	ENSMUST00000126686.1|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3 	ENSMUST00000033671.6|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3
mm10_v2_chr4_-_34687382_34687452	0.042856	AUGGCAC	ENSMUST00000029970.7|Slc35a1|ENSMUSG00000028293.8|solute carrier family 35 (CMP-sialic acid transporter), member 1
mm10_v2_chr13_+_66932802_66932843	0.0425697	AUGGCAC	ENSMUST00000021990.3|Ptdss1|ENSMUSG00000021518.3|phosphatidylserine synthase 1
mm10_v2_chr2_-_73892530_73892555	0.0418619	AUGGCAC	ENSMUST00000136958.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000112010.2|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000128531.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000112017.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2
mm10_v2_chr13_+_14063776_14063822	0.0416832	AUGGCAC	ENSMUST00000129488.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110536.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110534.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000039538.8|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110533.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like)
mm10_v2_chr13_+_54621780_54621793	0.0408484	AUGGCAC	ENSMUST00000126071.1|Faf2|ENSMUSG00000025873.9|Fas associated factor family member 2
mm10_v2_chr2_-_153241402_153241426	0.039417	AUGGCAC	ENSMUST00000056924.7|Plagl2|ENSMUSG00000051413.11|pleiomorphic adenoma gene-like 2
mm10_v2_chr2_+_90940397_90940543	0.0394075	AUGGCAC	ENSMUST00000068726.6|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000005643.7|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000177642.1|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000111451.3|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000068747.7|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1
mm10_v2_chr14_-_105896819_105896819	0.0381743	AUGGCAC	ENSMUST00000022709.4|Spry2|ENSMUSG00000022114.4|sprouty homolog 2 (Drosophila)
mm10_v2_chr4_-_84675275_84675394	0.038032	AUGGCAC	ENSMUST00000176612.1|Bnc2|ENSMUSG00000028487.12|basonuclin 2
mm10_v2_chr16_+_23107754_23107761	0.0372803	AUGGCAC	ENSMUST00000077605.5|Eif4a2|ENSMUSG00000022884.8|eukaryotic translation initiation factor 4A2 	ENSMUST00000115341.3|Eif4a2|ENSMUSG00000022884.8|eukaryotic translation initiation factor 4A2
mm10_v2_chr11_-_90002881_90002898	0.0370841	AUGGCAC	ENSMUST00000020864.8|Pctp|ENSMUSG00000020553.8|phosphatidylcholine transfer protein
mm10_v2_chr10_+_61680302_61680361	0.0361134	AUGGCAC	ENSMUST00000020285.8|Sar1a|ENSMUSG00000020088.9|SAR1 gene homolog A (S. cerevisiae)
mm10_v2_chr12_-_69892989_69893103	0.0352919	AUGGCAC	ENSMUST00000110567.1|Map4k5|ENSMUSG00000034761.9|mitogen-activated protein kinase kinase kinase kinase 5 	ENSMUST00000171211.1|Map4k5|ENSMUSG00000034761.9|mitogen-activated protein kinase kinase kinase kinase 5
mm10_v2_chr2_-_37647199_37647285	0.0350885	AUGGCAC	ENSMUST00000028279.3|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr4_+_124802543_124802678	0.0345887	AUGGCAC	ENSMUST00000138807.1|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1 	ENSMUST00000030723.2|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1 	ENSMUST00000175875.1|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1
mm10_v2_chr5_-_128953303_128953362	0.0338173	AUGGCAC	ENSMUST00000111346.1|Rimbp2|ENSMUSG00000029420.8|RIMS binding protein 2
mm10_v2_chr12_+_110485710_110485755	0.033432	AUGGCAC	ENSMUST00000084985.3|Ppp2r5c|ENSMUSG00000017843.7|protein phosphatase 2, regulatory subunit B (B56), gamma isoform 	ENSMUST00000109832.1|Ppp2r5c|ENSMUSG00000017843.7|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm10_v2_chr12_+_112722163_112722239	0.0333555	AUGGCAC	ENSMUST00000101018.3|Cep170b|ENSMUSG00000072825.4|centrosomal protein 170B 	ENSMUST00000179041.1|Cep170b|ENSMUSG00000072825.4|centrosomal protein 170B 	ENSMUST00000092279.6|Cep170b|ENSMUSG00000072825.4|centrosomal protein 170B
mm10_v2_chr6_+_21949571_21949683	0.0327879	AUGGCAC	ENSMUST00000031680.3|Ing3|ENSMUSG00000029670.6|inhibitor of growth family, member 3 	ENSMUST00000115389.1|Ing3|ENSMUSG00000029670.6|inhibitor of growth family, member 3 	ENSMUST00000151473.1|Ing3|ENSMUSG00000029670.6|inhibitor of growth family, member 3
mm10_v2_chr2_-_60963192_60963251	0.0327049	AUGGCAC	ENSMUST00000028347.6|Rbms1|ENSMUSG00000026970.10|RNA binding motif, single stranded interacting protein 1
mm10_v2_chr14_+_56887795_56887795	0.0314184	AUGGCAC	ENSMUST00000022511.8|Zmym2|ENSMUSG00000021945.8|zinc finger, MYM-type 2
mm10_v2_chr14_-_67008834_67008877	0.0313644	AUGGCAC	ENSMUST00000111115.1|Bnip3l|ENSMUSG00000022051.9|BCL2/adenovirus E1B interacting protein 3-like 	ENSMUST00000022634.8|Bnip3l|ENSMUSG00000022051.9|BCL2/adenovirus E1B interacting protein 3-like
mm10_v2_chr16_-_87432597_87432613	0.0300023	AUGGCAC	ENSMUST00000039449.7|Ltn1|ENSMUSG00000052299.8|listerin E3 ubiquitin protein ligase 1
mm10_v2_chr3_+_142530329_142530386	0.0289974	AUGGCAC	ENSMUST00000171263.1|Gbp7|ENSMUSG00000040253.9|guanylate binding protein 7 	ENSMUST00000045097.9|Gbp7|ENSMUSG00000040253.9|guanylate binding protein 7
mm10_v2_chr17_+_56584973_56585059	0.0288248	AUGGCAC	ENSMUST00000182533.1|Safb|ENSMUSG00000071054.6|scaffold attachment factor B 	ENSMUST00000182800.1|Safb|ENSMUSG00000071054.6|scaffold attachment factor B 	ENSMUST00000095224.4|Safb|ENSMUSG00000071054.6|scaffold attachment factor B
mm10_v2_chr9_-_40346290_40346337	0.0286218	AUGGCAC	ENSMUST00000121357.1|Gramd1b|ENSMUSG00000040111.8|GRAM domain containing 1B
mm10_v2_chr5_+_96997676_96997766	0.0285883	AUGGCAC	ENSMUST00000112974.1|Bmp2k|ENSMUSG00000034663.7|BMP2 inducible kinase 	ENSMUST00000035635.7|Bmp2k|ENSMUSG00000034663.7|BMP2 inducible kinase
mm10_v2_chr7_+_80993658_80993698	0.0285195	AUGGCAC	ENSMUST00000107353.2|Zfp592|ENSMUSG00000005621.11|zinc finger protein 592
mm10_v2_chr7_+_112023469_112023566	0.0276149	AUGGCAC	ENSMUST00000106653.2|Usp47|ENSMUSG00000059263.7|ubiquitin specific peptidase 47
mm10_v2_chr4_+_53440516_53440684	0.0275211	AUGGCAC	ENSMUST00000107651.2|Slc44a1|ENSMUSG00000028412.11|solute carrier family 44, member 1 	ENSMUST00000107647.1|Slc44a1|ENSMUSG00000028412.11|solute carrier family 44, member 1
mm10_v2_chr9_+_6168638_6168671	0.026674	AUGGCAC	ENSMUST00000058692.7|Pdgfd|ENSMUSG00000032006.8|platelet-derived growth factor, D polypeptide
mm10_v2_chr14_+_74640840_74640887	0.0265614	AUGGCAC	ENSMUST00000036653.3|Htr2a|ENSMUSG00000034997.4|5-hydroxytryptamine (serotonin) receptor 2A
mm10_v2_chr18_-_88894322_88894371	0.024048	AUGGCAC	ENSMUST00000070116.5|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6 	ENSMUST00000125362.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr2_+_59160884_59161008	0.0235084	AUGGCAC	ENSMUST00000037903.8|Pkp4|ENSMUSG00000026991.14|plakophilin 4
mm10_v2_chr10_-_119240006_119240092	0.0223896	AUGGCAC	ENSMUST00000020315.6|Cand1|ENSMUSG00000020114.6|cullin associated and neddylation disassociated 1
mm10_v2_chr17_-_10319324_10319380	0.0220487	AUGGCAC	ENSMUST00000097414.3|Qk|ENSMUSG00000062078.8|quaking 	ENSMUST00000042296.7|Qk|ENSMUSG00000062078.8|quaking
mm10_v2_chr11_+_57011798_57011827	0.0220391	AUGGCAC	ENSMUST00000036315.9|Gria1|ENSMUSG00000020524.10|glutamate receptor, ionotropic, AMPA1 (alpha 1)
mm10_v2_chr19_+_25236959_25236982	0.0215899	AUGGCAC	ENSMUST00000049400.8|Kank1|ENSMUSG00000032702.10|KN motif and ankyrin repeat domains 1
mm10_v2_chr11_-_116853083_116853099	0.0210137	AUGGCAC	ENSMUST00000092404.6|Srsf2|ENSMUSG00000034120.12|serine/arginine-rich splicing factor 2
mm10_v2_chr11_+_75679259_75679327	0.0195856	AUGGCAC	ENSMUST00000017920.7|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000108426.1|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000108425.1|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000093115.3|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian)
mm10_v2_chr10_+_95940663_95940703	0.0188125	AUGGCAC	ENSMUST00000053484.6|Eea1|ENSMUSG00000036499.8|early endosome antigen 1
mm10_v2_chr2_-_33431324_33431324	0.0185871	AUGGCAC	ENSMUST00000113158.1|Zbtb34|ENSMUSG00000068966.4|zinc finger and BTB domain containing 34
mm10_v2_chr11_+_53350783_53350833	0.0185197	AUGGCAC	ENSMUST00000060945.5|Aff4|ENSMUSG00000049470.7|AF4/FMR2 family, member 4
mm10_v2_chr18_-_46525940_46525999	0.0168978	AUGGCAC	ENSMUST00000036226.5|Fem1c|ENSMUSG00000033319.5|fem-1 homolog c (C.elegans)
mm10_v2_chr1_+_58393119_58393147	0.0155758	AUGGCAC	ENSMUST00000050552.8|Bzw1|ENSMUSG00000051223.8|basic leucine zipper and W2 domains 1
mm10_v2_chr6_-_32588192_32588213	0.0145242	AUGGCAC	ENSMUST00000115096.2|Plxna4|ENSMUSG00000029765.10|plexin A4
mm10_v2_chr7_+_97579868_97579901	0.013609	AUGGCAC	ENSMUST00000042399.7|Rsf1|ENSMUSG00000035623.8|remodeling and spacing factor 1 	ENSMUST00000107153.1|Rsf1|ENSMUSG00000035623.8|remodeling and spacing factor 1
mm10_v2_chr17_-_79896028_79896123	0.0126694	AUGGCAC	ENSMUST00000068282.5|Atl2|ENSMUSG00000059811.6|atlastin GTPase 2 	ENSMUST00000112437.1|Atl2|ENSMUSG00000059811.6|atlastin GTPase 2
mm10_v2_chr15_+_80711292_80711340	0.0104437	AUGGCAC	ENSMUST00000067689.7|Tnrc6b|ENSMUSG00000047888.9|trinucleotide repeat containing 6b
mm10_v2_chr1_+_32172711_32172806	0.0099444	AUGGCAC	ENSMUST00000027226.5|Khdrbs2|ENSMUSG00000026058.5|KH domain containing, RNA binding, signal transduction associated 2
mm10_v2_chr19_-_7341792_7341829	0.0079796	AUGGCAC	ENSMUST00000164205.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000165286.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000168324.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000032557.8|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2
mm10_v2_chr12_+_55836365_55836408	0.00797406	AUGGCAC	ENSMUST00000059250.6|Brms1l|ENSMUSG00000012076.7|breast cancer metastasis-suppressor 1-like
mm10_v2_chr2_+_74704861_74704914	0.00753756	AUGGCAC	ENSMUST00000019749.3|Hoxd8|ENSMUSG00000027102.4|homeobox D8
mm10_v2_chr8_+_40511769_40511787	0.00720788	AUGGCAC	ENSMUST00000098817.2|Vps37a|ENSMUSG00000031600.10|vacuolar protein sorting 37A (yeast)
mm10_v2_chr19_-_32388462_32388512	0.00719926	AUGGCAC	ENSMUST00000099514.3|Sgms1|ENSMUSG00000040451.11|sphingomyelin synthase 1
mm10_v2_chr6_-_31563978_31563989	0.00603843	AUGGCAC	ENSMUST00000026698.7|Podxl|ENSMUSG00000025608.9|podocalyxin-like
mm10_v2_chr8_+_3393018_3393073	0.00443569	AUGGCAC	ENSMUST00000004684.6|Arhgef18|ENSMUSG00000004568.6|rho/rac guanine nucleotide exchange factor (GEF) 18 	ENSMUST00000145394.1|Arhgef18|ENSMUSG00000004568.6|rho/rac guanine nucleotide exchange factor (GEF) 18
mm10_v2_chr3_+_130180882_130180899	0.00424257	AUGGCAC	ENSMUST00000106353.1|Col25a1|ENSMUSG00000058897.11|collagen, type XXV, alpha 1 	ENSMUST00000080335.4|Col25a1|ENSMUSG00000058897.11|collagen, type XXV, alpha 1
mm10_v2_chr16_-_55934845_55934868	0.00387803	AUGGCAC	ENSMUST00000121129.1|Cep97|ENSMUSG00000022604.12|centrosomal protein 97 	ENSMUST00000023270.7|Cep97|ENSMUSG00000022604.12|centrosomal protein 97
mm10_v2_chr1_+_129273344_129273470	0.00332972	AUGGCAC	ENSMUST00000073527.6|Thsd7b|ENSMUSG00000042581.8|thrombospondin, type I, domain containing 7B 	ENSMUST00000040311.7|Thsd7b|ENSMUSG00000042581.8|thrombospondin, type I, domain containing 7B
mm10_v2_chr5_+_67306941_67306977	0.00243795	AUGGCAC	ENSMUST00000162372.1|Slc30a9|ENSMUSG00000029221.9|solute carrier family 30 (zinc transporter), member 9 	ENSMUST00000113676.2|Slc30a9|ENSMUSG00000029221.9|solute carrier family 30 (zinc transporter), member 9
mm10_v2_chr3_+_30995747_30995868	0.00129936	AUGGCAC	ENSMUST00000108249.2|Prkci|ENSMUSG00000037643.8|protein kinase C, iota
mm10_v2_chr10_-_25200110_25200178	0.000513446	AUGGCAC	ENSMUST00000100012.2|Akap7|ENSMUSG00000039166.9|A kinase (PRKA) anchor protein 7
mm10_v2_chr10_-_115315546_115315615	0.00048174	AUGGCAC	ENSMUST00000020343.7|Rab21|ENSMUSG00000020132.9|RAB21, member RAS oncogene family
