mm10_v2_chr4_+_11156411_11156453	0.424842	AUGGCUU	ENSMUST00000029865.3|Trp53inp1|ENSMUSG00000028211.5|transformation related protein 53 inducible nuclear protein 1
mm10_v2_chr2_+_65620829_65620857	0.320789	AUGGCUU	ENSMUST00000028377.7|Scn2a1|ENSMUSG00000075318.6|sodium channel, voltage-gated, type II, alpha 1
mm10_v2_chrX_+_41401304_41401427	0.280429	AUGGCUU	ENSMUST00000076349.5|Gria3|ENSMUSG00000001986.10|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm10_v2_chr1_+_34801704_34801776	0.263107	AUGGCUU	ENSMUST00000047664.9|Arhgef4|ENSMUSG00000037509.12|Rho guanine nucleotide exchange factor (GEF) 4
mm10_v2_chr1_-_21961581_21961581	0.223884	AUGGCUU	ENSMUST00000029667.6|Kcnq5|ENSMUSG00000028033.10|potassium voltage-gated channel, subfamily Q, member 5 	ENSMUST00000173058.1|Kcnq5|ENSMUSG00000028033.10|potassium voltage-gated channel, subfamily Q, member 5 	ENSMUST00000173404.1|Kcnq5|ENSMUSG00000028033.10|potassium voltage-gated channel, subfamily Q, member 5
mm10_v2_chr15_-_103340085_103340100	0.20448	AUGGCUU	ENSMUST00000168828.1|Zfp385a|ENSMUSG00000000552.9|zinc finger protein 385A
mm10_v2_chr17_+_42315947_42315947	0.19387	AUGGCUU	ENSMUST00000048691.4|Ptchd4|ENSMUSG00000042256.4|patched domain containing 4
mm10_v2_chr8_-_31918203_31918368	0.191865	AUGGCUU	ENSMUST00000073884.4|Nrg1|ENSMUSG00000062991.6|neuregulin 1
mm10_v2_chr7_+_29303958_29303983	0.190126	AUGGCUU	ENSMUST00000049977.6|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1
mm10_v2_chr4_+_21931291_21931366	0.163299	AUGGCUU	ENSMUST00000029908.7|Faxc|ENSMUSG00000028246.7|failed axon connections homolog (Drosophila)
mm10_v2_chr1_-_173367638_173367695	0.161995	AUGGCUU	ENSMUST00000005470.4|Cadm3|ENSMUSG00000005338.7|cell adhesion molecule 3 	ENSMUST00000111220.1|Cadm3|ENSMUSG00000005338.7|cell adhesion molecule 3
mm10_v2_chr2_+_55437100_55437182	0.159054	AUGGCUU	ENSMUST00000112633.2|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3 	ENSMUST00000112632.1|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3
mm10_v2_chr19_-_6921804_6921834	0.152231	AUGGCUU	ENSMUST00000025906.4|Esrra|ENSMUSG00000024955.7|estrogen related receptor, alpha
mm10_v2_chr10_-_18743691_18743760	0.149333	AUGGCUU	ENSMUST00000019999.5|D10Bwg1379e|ENSMUSG00000019852.6|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed
mm10_v2_chr1_-_193370260_193370297	0.149134	AUGGCUU	ENSMUST00000016323.4|Camk1g|ENSMUSG00000016179.5|calcium/calmodulin-dependent protein kinase I gamma
mm10_v2_chr9_+_14276301_14276347	0.1488	AUGGCUU	ENSMUST00000034507.7|Sesn3|ENSMUSG00000032009.7|sestrin 3
mm10_v2_chr2_-_136387929_136387985	0.148277	AUGGCUU	ENSMUST00000035264.2|Pak7|ENSMUSG00000039913.6|p21 protein (Cdc42/Rac)-activated kinase 7 	ENSMUST00000077200.3|Pak7|ENSMUSG00000039913.6|p21 protein (Cdc42/Rac)-activated kinase 7
mm10_v2_chr3_+_89520152_89520175	0.148233	AUGGCUU	ENSMUST00000000811.7|Kcnn3|ENSMUSG00000000794.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm10_v2_chr14_+_27622433_27622543	0.138214	AUGGCUU	ENSMUST00000090302.5|Erc2|ENSMUSG00000040640.9|ELKS/RAB6-interacting/CAST family member 2
mm10_v2_chrX_+_9199865_9199907	0.133268	AUGGCUU	ENSMUST00000069763.2|Lancl3|ENSMUSG00000047344.9|LanC lantibiotic synthetase component C-like 3 (bacterial)
mm10_v2_chr3_-_51560816_51560878	0.13071	AUGGCUU	ENSMUST00000037141.7|Setd7|ENSMUSG00000037111.8|SET domain containing (lysine methyltransferase) 7
mm10_v2_chr8_-_69184177_69184240	0.128196	AUGGCUU	ENSMUST00000185176.1|Lzts1|ENSMUSG00000036306.5|leucine zipper, putative tumor suppressor 1
mm10_v2_chr1_+_134560190_134560213	0.119688	AUGGCUU	ENSMUST00000112198.1|Kdm5b|ENSMUSG00000042207.11|lysine (K)-specific demethylase 5B 	ENSMUST00000112197.1|Kdm5b|ENSMUSG00000042207.11|lysine (K)-specific demethylase 5B
mm10_v2_chr12_-_36156781_36156825	0.116365	AUGGCUU	ENSMUST00000020856.4|Bzw2|ENSMUSG00000020547.4|basic leucine zipper and W2 domains 2
mm10_v2_chr11_+_120232921_120232952	0.1148	AUGGCUU	ENSMUST00000122148.1|Bahcc1|ENSMUSG00000039741.9|BAH domain and coiled-coil containing 1 	ENSMUST00000044985.7|Bahcc1|ENSMUSG00000039741.9|BAH domain and coiled-coil containing 1
mm10_v2_chr2_-_33640480_33640511	0.114542	AUGGCUU	ENSMUST00000176067.1|Lmx1b|ENSMUSG00000038765.7|LIM homeobox transcription factor 1 beta 	ENSMUST00000041730.4|Lmx1b|ENSMUSG00000038765.7|LIM homeobox transcription factor 1 beta
mm10_v2_chr3_+_96557950_96557968	0.113818	AUGGCUU	ENSMUST00000074519.6|Txnip|ENSMUSG00000038393.8|thioredoxin interacting protein 	ENSMUST00000049093.7|Txnip|ENSMUSG00000038393.8|thioredoxin interacting protein
mm10_v2_chr5_-_108549934_108550024	0.112506	AUGGCUU	ENSMUST00000129040.1|Cplx1|ENSMUSG00000033615.9|complexin 1 	ENSMUST00000046892.9|Cplx1|ENSMUSG00000033615.9|complexin 1
mm10_v2_chr1_-_162740350_162740533	0.111957	AUGGCUU	ENSMUST00000182331.1|Prrc2c|ENSMUSG00000040225.9|proline-rich coiled-coil 2C 	ENSMUST00000183011.1|Prrc2c|ENSMUSG00000040225.9|proline-rich coiled-coil 2C 	ENSMUST00000182593.1|Prrc2c|ENSMUSG00000040225.9|proline-rich coiled-coil 2C 	ENSMUST00000182149.1|Prrc2c|ENSMUSG00000040225.9|proline-rich coiled-coil 2C
mm10_v2_chr7_+_28179469_28179535	0.109941	AUGGCUU	ENSMUST00000085901.6|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b 	ENSMUST00000172761.1|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm10_v2_chrX_-_168123311_168123334	0.108611	AUGGCUU	ENSMUST00000112149.1|Frmpd4|ENSMUSG00000049176.8|FERM and PDZ domain containing 4
mm10_v2_chr14_+_17660956_17660963	0.108425	AUGGCUU	ENSMUST00000022303.7|Thrb|ENSMUSG00000021779.10|thyroid hormone receptor beta 	ENSMUST00000091471.4|Thrb|ENSMUSG00000021779.10|thyroid hormone receptor beta
mm10_v2_chr13_+_56702983_56703112	0.106588	AUGGCUU	ENSMUST00000069557.7|Smad5|ENSMUSG00000021540.10|SMAD family member 5 	ENSMUST00000109876.1|Smad5|ENSMUSG00000021540.10|SMAD family member 5
mm10_v2_chr9_-_106158109_106158138	0.106056	AUGGCUU	ENSMUST00000159809.1|Glyctk|ENSMUSG00000020258.9|glycerate kinase 	ENSMUST00000162562.1|Glyctk|ENSMUSG00000020258.9|glycerate kinase 	ENSMUST00000036382.6|Glyctk|ENSMUSG00000020258.9|glycerate kinase 	ENSMUST00000112543.2|Glyctk|ENSMUSG00000020258.9|glycerate kinase
mm10_v2_chr17_-_25015230_25015230	0.0990808	AUGGCUU	ENSMUST00000073337.6|Cramp1l|ENSMUSG00000038002.8|Crm, cramped-like (Drosophila)
mm10_v2_chr17_-_81649607_81649607	0.0977644	AUGGCUU	ENSMUST00000163680.2|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1 	ENSMUST00000086538.3|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1 	ENSMUST00000163123.1|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1
mm10_v2_chr7_+_44384098_44384154	0.0968591	AUGGCUU	ENSMUST00000118962.1|Syt3|ENSMUSG00000030731.7|synaptotagmin III 	ENSMUST00000118831.1|Syt3|ENSMUSG00000030731.7|synaptotagmin III
mm10_v2_chr5_-_38159457_38159491	0.0966182	AUGGCUU	ENSMUST00000031009.4|Nsg1|ENSMUSG00000029126.4|neuron specific gene family member 1
mm10_v2_chr15_+_101174096_101174148	0.0954134	AUGGCUU	ENSMUST00000000544.9|Acvr1b|ENSMUSG00000000532.9|activin A receptor, type 1B
mm10_v2_chr14_-_78725089_78725089	0.095259	AUGGCUU	ENSMUST00000074729.5|Dgkh|ENSMUSG00000034731.9|diacylglycerol kinase, eta
mm10_v2_chr1_+_132007606_132007634	0.0933889	AUGGCUU	ENSMUST00000086556.5|Elk4|ENSMUSG00000026436.9|ELK4, member of ETS oncogene family
mm10_v2_chr18_-_61400363_61400449	0.0885422	AUGGCUU	ENSMUST00000063307.5|Ppargc1b|ENSMUSG00000033871.8|peroxisome proliferative activated receptor, gamma, coactivator 1 beta 	ENSMUST00000075299.6|Ppargc1b|ENSMUSG00000033871.8|peroxisome proliferative activated receptor, gamma, coactivator 1 beta
mm10_v2_chr8_+_14095849_14095915	0.0877655	AUGGCUU	ENSMUST00000152652.1|Dlgap2|ENSMUSG00000047495.9|discs, large (Drosophila) homolog-associated protein 2 	ENSMUST00000133298.1|Dlgap2|ENSMUSG00000047495.9|discs, large (Drosophila) homolog-associated protein 2
mm10_v2_chr5_+_25759987_25760044	0.0875083	AUGGCUU	ENSMUST00000128727.1|Actr3b|ENSMUSG00000056367.8|ARP3 actin-related protein 3B 	ENSMUST00000088244.4|Actr3b|ENSMUSG00000056367.8|ARP3 actin-related protein 3B
mm10_v2_chr10_-_80577285_80577327	0.0844273	AUGGCUU	ENSMUST00000038558.8|Klf16|ENSMUSG00000035397.8|Kruppel-like factor 16
mm10_v2_chr4_-_105109829_105109913	0.0836042	AUGGCUU	ENSMUST00000030243.7|Prkaa2|ENSMUSG00000028518.8|protein kinase, AMP-activated, alpha 2 catalytic subunit
mm10_v2_chr13_-_40733768_40733836	0.0820043	AUGGCUU	ENSMUST00000110193.2|Tfap2a|ENSMUSG00000021359.9|transcription factor AP-2, alpha
mm10_v2_chr9_-_108190352_108190420	0.081604	AUGGCUU	ENSMUST00000035208.7|Bsn|ENSMUSG00000032589.8|bassoon
mm10_v2_chrX_+_73673150_73673242	0.0794704	AUGGCUU	ENSMUST00000033752.7|Slc6a8|ENSMUSG00000019558.8|solute carrier family 6 (neurotransmitter transporter, creatine), member 8 	ENSMUST00000114467.2|Slc6a8|ENSMUSG00000019558.8|solute carrier family 6 (neurotransmitter transporter, creatine), member 8
mm10_v2_chr14_-_30353468_30353535	0.0793497	AUGGCUU	ENSMUST00000112249.1|Cacna1d|ENSMUSG00000015968.10|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm10_v2_chr11_-_119547744_119547759	0.0788243	AUGGCUU	ENSMUST00000026670.4|Nptx1|ENSMUSG00000025582.4|neuronal pentraxin 1
mm10_v2_chr15_-_73184840_73184971	0.0785807	AUGGCUU	ENSMUST00000044113.10|Ago2|ENSMUSG00000036698.10|argonaute RISC catalytic subunit 2
mm10_v2_chr6_-_39206782_39206831	0.0782894	AUGGCUU	ENSMUST00000002305.8|Jhdm1d|ENSMUSG00000042599.8|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm10_v2_chr9_+_8544196_8544225	0.0757555	AUGGCUU	ENSMUST00000050433.6|Trpc6|ENSMUSG00000031997.8|transient receptor potential cation channel, subfamily C, member 6
mm10_v2_chr13_+_41249841_41249863	0.0740919	AUGGCUU	ENSMUST00000165561.2|Smim13|ENSMUSG00000091264.2|small integral membrane protein 13
mm10_v2_chr3_+_129532386_129532440	0.0735912	AUGGCUU	ENSMUST00000071402.2|Elovl6|ENSMUSG00000041220.6|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm10_v2_chr1_-_171196229_171196268	0.0732145	AUGGCUU	ENSMUST00000111332.1|Pcp4l1|ENSMUSG00000038370.6|Purkinje cell protein 4-like 1
mm10_v2_chr4_+_17853451_17853474	0.0716618	AUGGCUU	ENSMUST00000029881.3|Mmp16|ENSMUSG00000028226.9|matrix metallopeptidase 16
mm10_v2_chr4_+_125490688_125490704	0.0712369	AUGGCUU	ENSMUST00000030676.7|Grik3|ENSMUSG00000001985.9|glutamate receptor, ionotropic, kainate 3
mm10_v2_chr9_+_45838572_45838592	0.0711333	AUGGCUU	ENSMUST00000078111.4|Bace1|ENSMUSG00000032086.6|beta-site APP cleaving enzyme 1 	ENSMUST00000034591.4|Bace1|ENSMUSG00000032086.6|beta-site APP cleaving enzyme 1
mm10_v2_chr11_+_98937669_98937735	0.0711024	AUGGCUU	ENSMUST00000107475.2|Rara|ENSMUSG00000037992.10|retinoic acid receptor, alpha 	ENSMUST00000068133.3|Rara|ENSMUSG00000037992.10|retinoic acid receptor, alpha
mm10_v2_chr19_+_43689672_43689695	0.0710928	AUGGCUU	ENSMUST00000081079.5|Entpd7|ENSMUSG00000025192.7|ectonucleoside triphosphate diphosphohydrolase 7
mm10_v2_chr11_+_7063423_7063496	0.0709693	AUGGCUU	ENSMUST00000020706.4|Adcy1|ENSMUSG00000020431.5|adenylate cyclase 1
mm10_v2_chr8_+_95703037_95703063	0.0699578	AUGGCUU	ENSMUST00000073139.7|Ndrg4|ENSMUSG00000036564.10|N-myc downstream regulated gene 4 	ENSMUST00000080666.7|Ndrg4|ENSMUSG00000036564.10|N-myc downstream regulated gene 4
mm10_v2_chr17_+_64600702_64600739	0.0694826	AUGGCUU	ENSMUST00000086723.3|Man2a1|ENSMUSG00000024085.7|mannosidase 2, alpha 1
mm10_v2_chr11_-_5381734_5381745	0.0690789	AUGGCUU	ENSMUST00000172492.1|Znrf3|ENSMUSG00000041961.8|zinc and ring finger 3
mm10_v2_chr11_+_115814724_115814778	0.0689577	AUGGCUU	ENSMUST00000106481.2|Tsen54|ENSMUSG00000020781.8|tRNA splicing endonuclease 54 homolog (S. cerevisiae) 	ENSMUST00000021134.3|Tsen54|ENSMUSG00000020781.8|tRNA splicing endonuclease 54 homolog (S. cerevisiae)
mm10_v2_chr16_-_43979050_43979093	0.0689152	AUGGCUU	ENSMUST00000165648.1|Zdhhc23|ENSMUSG00000036304.7|zinc finger, DHHC domain containing 23 	ENSMUST00000036321.7|Zdhhc23|ENSMUSG00000036304.7|zinc finger, DHHC domain containing 23
mm10_v2_chr11_-_78165521_78165589	0.0687773	AUGGCUU	ENSMUST00000017530.3|Traf4|ENSMUSG00000017386.4|TNF receptor associated factor 4
mm10_v2_chr2_+_129800451_129800526	0.0686329	AUGGCUU	ENSMUST00000165413.2|Stk35|ENSMUSG00000037885.12|serine/threonine kinase 35 	ENSMUST00000166282.2|Stk35|ENSMUSG00000037885.12|serine/threonine kinase 35
mm10_v2_chr15_+_100761741_100761797	0.0666466	AUGGCUU	ENSMUST00000023776.6|Slc4a8|ENSMUSG00000023032.6|solute carrier family 4 (anion exchanger), member 8
mm10_v2_chr7_+_44310213_44310253	0.066055	AUGGCUU	ENSMUST00000107938.1|Shank1|ENSMUSG00000038738.9|SH3/ankyrin domain gene 1
mm10_v2_chr11_+_42419729_42419785	0.0659991	AUGGCUU	ENSMUST00000007797.4|Gabrb2|ENSMUSG00000007653.6|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2
mm10_v2_chr15_+_12205009_12205040	0.0659321	AUGGCUU	ENSMUST00000038172.8|Mtmr12|ENSMUSG00000039458.8|myotubularin related protein 12
mm10_v2_chr1_-_133753681_133753857	0.0621485	AUGGCUU	ENSMUST00000125659.1|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4 	ENSMUST00000165602.2|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4 	ENSMUST00000048953.7|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4
mm10_v2_chr11_-_69801716_69801857	0.0619844	AUGGCUU	ENSMUST00000011285.4|Fgf11|ENSMUSG00000042826.7|fibroblast growth factor 11 	ENSMUST00000102585.1|Fgf11|ENSMUSG00000042826.7|fibroblast growth factor 11
mm10_v2_chr10_-_121311034_121311189	0.0609972	AUGGCUU	ENSMUST00000064107.5|Tbc1d30|ENSMUSG00000052302.5|TBC1 domain family, member 30
mm10_v2_chr6_-_72439549_72439564	0.0605245	AUGGCUU	ENSMUST00000059472.8|Mat2a|ENSMUSG00000053907.9|methionine adenosyltransferase II, alpha
mm10_v2_chr6_+_55451978_55452057	0.0598856	AUGGCUU	ENSMUST00000070736.5|Adcyap1r1|ENSMUSG00000029778.6|adenylate cyclase activating polypeptide 1 receptor 1 	ENSMUST00000070756.5|Adcyap1r1|ENSMUSG00000029778.6|adenylate cyclase activating polypeptide 1 receptor 1 	ENSMUST00000166962.1|Adcyap1r1|ENSMUSG00000029778.6|adenylate cyclase activating polypeptide 1 receptor 1
mm10_v2_chr5_+_138085083_138085147	0.0598535	AUGGCUU	ENSMUST00000019660.4|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1 	ENSMUST00000066617.5|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1 	ENSMUST00000110963.1|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1
mm10_v2_chr5_-_143180721_143180795	0.0598128	AUGGCUU	ENSMUST00000164068.1|Rbak|ENSMUSG00000061898.4|RB-associated KRAB repressor 	ENSMUST00000049861.4|Rbak|ENSMUSG00000061898.4|RB-associated KRAB repressor 	ENSMUST00000165318.1|Rbak|ENSMUSG00000061898.4|RB-associated KRAB repressor
mm10_v2_chr7_-_46795881_46796085	0.058683	AUGGCUU	ENSMUST00000107653.1|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human) 	ENSMUST00000107654.1|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human) 	ENSMUST00000014562.7|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human) 	ENSMUST00000152759.1|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human)
mm10_v2_chr13_-_41220395_41220412	0.0575563	AUGGCUU	ENSMUST00000021793.7|Elovl2|ENSMUSG00000021364.9|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2
mm10_v2_chr14_-_46822232_46822266	0.0566238	AUGGCUU	ENSMUST00000111817.1|Gmfb|ENSMUSG00000062014.6|glia maturation factor, beta 	ENSMUST00000079314.5|Gmfb|ENSMUSG00000062014.6|glia maturation factor, beta
mm10_v2_chr15_+_102406143_102406380	0.0563616	AUGGCUU	ENSMUST00000170884.1|Sp1|ENSMUSG00000001280.6|trans-acting transcription factor 1 	ENSMUST00000165924.1|Sp1|ENSMUSG00000001280.6|trans-acting transcription factor 1 	ENSMUST00000163709.1|Sp1|ENSMUSG00000001280.6|trans-acting transcription factor 1 	ENSMUST00000001326.6|Sp1|ENSMUSG00000001280.6|trans-acting transcription factor 1
mm10_v2_chr5_-_135934590_135934613	0.055058	AUGGCUU	ENSMUST00000055808.5|Ywhag|ENSMUSG00000051391.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm10_v2_chr15_-_79687776_79687894	0.054958	AUGGCUU	ENSMUST00000023061.5|Josd1|ENSMUSG00000022426.5|Josephin domain containing 1
mm10_v2_chr9_-_36726374_36726658	0.0547001	AUGGCUU	ENSMUST00000172702.2|Chek1|ENSMUSG00000032113.9|checkpoint kinase 1 	ENSMUST00000172742.1|Chek1|ENSMUSG00000032113.9|checkpoint kinase 1 	ENSMUST00000034625.5|Chek1|ENSMUSG00000032113.9|checkpoint kinase 1
mm10_v2_chr11_-_76846968_76847045	0.0544101	AUGGCUU	ENSMUST00000021201.5|Cpd|ENSMUSG00000020841.5|carboxypeptidase D
mm10_v2_chr8_-_70776650_70776716	0.053028	AUGGCUU	ENSMUST00000034296.8|Pik3r2|ENSMUSG00000031834.9|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta)
mm10_v2_chr9_+_3532295_3532354	0.052609	AUGGCUU	ENSMUST00000115733.1|Gucy1a2|ENSMUSG00000041624.9|guanylate cyclase 1, soluble, alpha 2
mm10_v2_chr9_-_116175318_116175363	0.052515	AUGGCUU	ENSMUST00000061101.4|Tgfbr2|ENSMUSG00000032440.6|transforming growth factor, beta receptor II 	ENSMUST00000035014.6|Tgfbr2|ENSMUSG00000032440.6|transforming growth factor, beta receptor II
mm10_v2_chrX_+_93654863_93654981	0.0523203	AUGGCUU	ENSMUST00000113933.2|Pcyt1b|ENSMUSG00000035246.10|phosphate cytidylyltransferase 1, choline, beta isoform
mm10_v2_chr2_-_167188787_167188815	0.0516937	AUGGCUU	ENSMUST00000059826.8|Kcnb1|ENSMUSG00000050556.8|potassium voltage gated channel, Shab-related subfamily, member 1
mm10_v2_chr14_+_120478443_120478510	0.0503533	AUGGCUU	ENSMUST00000062117.6|Rap2a|ENSMUSG00000051615.7|RAS related protein 2a
mm10_v2_chr14_+_66344369_66344380	0.0496477	AUGGCUU	ENSMUST00000118426.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4 	ENSMUST00000121955.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4 	ENSMUST00000120229.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4 	ENSMUST00000134440.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4
mm10_v2_chr15_+_86058727_86058793	0.0493124	AUGGCUU	ENSMUST00000138134.1|Gramd4|ENSMUSG00000035900.12|GRAM domain containing 4
mm10_v2_chr17_-_54299034_54299034	0.0492557	AUGGCUU	ENSMUST00000095712.3|Slc5a7|ENSMUSG00000023945.6|solute carrier family 5 (choline transporter), member 7
mm10_v2_chr18_-_10181792_10181792	0.0488692	AUGGCUU	ENSMUST00000067947.5|Rock1|ENSMUSG00000024290.8|Rho-associated coiled-coil containing protein kinase 1
mm10_v2_chr9_+_31030621_31030700	0.048792	AUGGCUU	ENSMUST00000115222.2|Zbtb44|ENSMUSG00000047412.9|zinc finger and BTB domain containing 44
mm10_v2_chr9_+_65908967_65909020	0.0482987	AUGGCUU	ENSMUST00000034949.3|Csnk1g1|ENSMUSG00000032384.9|casein kinase 1, gamma 1 	ENSMUST00000154589.1|Csnk1g1|ENSMUSG00000032384.9|casein kinase 1, gamma 1
mm10_v2_chr18_-_43687695_43687773	0.0482672	AUGGCUU	ENSMUST00000082254.6|Jakmip2|ENSMUSG00000024502.9|janus kinase and microtubule interacting protein 2
mm10_v2_chr7_-_109493627_109493738	0.0480522	AUGGCUU	ENSMUST00000106739.1|Trim66|ENSMUSG00000031026.8|tripartite motif-containing 66
mm10_v2_chr19_+_38264761_38264831	0.0473018	AUGGCUU	ENSMUST00000087252.5|Lgi1|ENSMUSG00000067242.5|leucine-rich repeat LGI family, member 1
mm10_v2_chr14_-_47568427_47568436	0.046401	AUGGCUU	ENSMUST00000042988.6|Atg14|ENSMUSG00000037526.6|autophagy related 14
mm10_v2_chr8_-_11008458_11008458	0.0447664	AUGGCUU	ENSMUST00000040514.6|Irs2|ENSMUSG00000038894.6|insulin receptor substrate 2
mm10_v2_chr4_-_141790891_141790931	0.0444994	AUGGCUU	ENSMUST00000038014.4|Dnajc16|ENSMUSG00000040697.4|DnaJ (Hsp40) homolog, subfamily C, member 16 	ENSMUST00000153880.1|Dnajc16|ENSMUSG00000040697.4|DnaJ (Hsp40) homolog, subfamily C, member 16
mm10_v2_chr19_+_36926071_36926177	0.0443447	AUGGCUU	ENSMUST00000099494.3|Btaf1|ENSMUSG00000040565.7|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, (Mot1 homolog, S. cerevisiae)
mm10_v2_chr16_+_38089001_38089064	0.0442758	AUGGCUU	ENSMUST00000023507.6|Gsk3b|ENSMUSG00000022812.7|glycogen synthase kinase 3 beta
mm10_v2_chr10_-_86498836_86498858	0.0440609	AUGGCUU	ENSMUST00000120638.1|Syn3|ENSMUSG00000059602.8|synapsin III
mm10_v2_chr1_-_176807124_176807124	0.0436891	AUGGCUU	ENSMUST00000057037.7|Cep170|ENSMUSG00000057335.6|centrosomal protein 170
mm10_v2_chrX_-_143933204_143933311	0.0423051	AUGGCUU	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr8_-_123859423_123859530	0.0412852	AUGGCUU	ENSMUST00000034452.5|Ccsap|ENSMUSG00000031971.9|centriole, cilia and spindle associated protein
mm10_v2_chr14_-_101609033_101609191	0.0410473	AUGGCUU	ENSMUST00000161991.1|Tbc1d4|ENSMUSG00000033083.10|TBC1 domain family, member 4 	ENSMUST00000100340.3|Tbc1d4|ENSMUSG00000033083.10|TBC1 domain family, member 4
mm10_v2_chr4_+_57637816_57637846	0.0398736	AUGGCUU	ENSMUST00000150412.1|Gm20459|ENSMUSG00000089945.4|predicted gene 20459
mm10_v2_chr2_-_33431324_33431324	0.0393685	AUGGCUU	ENSMUST00000113158.1|Zbtb34|ENSMUSG00000068966.4|zinc finger and BTB domain containing 34
mm10_v2_chr19_+_29522263_29522341	0.0391053	AUGGCUU	ENSMUST00000043610.6|C030046E11Rik|ENSMUSG00000038658.9|RIKEN cDNA C030046E11 gene 	ENSMUST00000162184.1|C030046E11Rik|ENSMUSG00000038658.9|RIKEN cDNA C030046E11 gene
mm10_v2_chr7_-_142095266_142095306	0.0379227	AUGGCUU	ENSMUST00000039926.3|Dusp8|ENSMUSG00000037887.5|dual specificity phosphatase 8
mm10_v2_chr11_+_69326252_69326275	0.0373681	AUGGCUU	ENSMUST00000018614.2|Kcnab3|ENSMUSG00000018470.2|potassium voltage-gated channel, shaker-related subfamily, beta member 3
mm10_v2_chr8_-_125898291_125898322	0.0372138	AUGGCUU	ENSMUST00000047239.6|Pcnxl2|ENSMUSG00000060212.7|pecanex-like 2 (Drosophila)
mm10_v2_chr10_+_69533761_69533776	0.0371832	AUGGCUU	ENSMUST00000182884.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr2_+_83812567_83812643	0.0358646	AUGGCUU	ENSMUST00000051454.3|Fam171b|ENSMUSG00000048388.3|family with sequence similarity 171, member B
mm10_v2_chr1_+_167001417_167001431	0.0357931	AUGGCUU	ENSMUST00000165874.1|Fam78b|ENSMUSG00000060568.8|family with sequence similarity 78, member B
mm10_v2_chr2_-_91070283_91070417	0.0355442	AUGGCUU	ENSMUST00000111436.2|Slc39a13|ENSMUSG00000002105.9|solute carrier family 39 (metal ion transporter), member 13 	ENSMUST00000073575.5|Slc39a13|ENSMUSG00000002105.9|solute carrier family 39 (metal ion transporter), member 13
mm10_v2_chr9_-_44251464_44251491	0.0346971	AUGGCUU	ENSMUST00000034618.4|Pdzd3|ENSMUSG00000032105.4|PDZ domain containing 3
mm10_v2_chr9_+_44499126_44499159	0.0345943	AUGGCUU	ENSMUST00000074989.5|Bcl9l|ENSMUSG00000063382.5|B cell CLL/lymphoma 9-like
mm10_v2_chr9_-_70141484_70141578	0.0345604	AUGGCUU	ENSMUST00000034749.8|Fam81a|ENSMUSG00000032224.8|family with sequence similarity 81, member A
mm10_v2_chr19_+_36554661_36554688	0.0343382	AUGGCUU	ENSMUST00000169036.2|Hectd2|ENSMUSG00000041180.7|HECT domain containing 2 	ENSMUST00000047247.5|Hectd2|ENSMUSG00000041180.7|HECT domain containing 2
mm10_v2_chr1_+_185204165_185204183	0.0339908	AUGGCUU	ENSMUST00000069652.6|Rab3gap2|ENSMUSG00000039318.7|RAB3 GTPase activating protein subunit 2
mm10_v2_chr18_-_61176994_61177057	0.0338733	AUGGCUU	ENSMUST00000091884.4|Hmgxb3|ENSMUSG00000024622.7|HMG box domain containing 3
mm10_v2_chr12_-_84970814_84970900	0.0338422	AUGGCUU	ENSMUST00000165886.1|Arel1|ENSMUSG00000042350.7|apoptosis resistant E3 ubiquitin protein ligase 1 	ENSMUST00000167448.1|Arel1|ENSMUSG00000042350.7|apoptosis resistant E3 ubiquitin protein ligase 1 	ENSMUST00000043169.7|Arel1|ENSMUSG00000042350.7|apoptosis resistant E3 ubiquitin protein ligase 1
mm10_v2_chr15_+_39198244_39198363	0.0335235	AUGGCUU	ENSMUST00000082054.5|Rims2|ENSMUSG00000037386.9|regulating synaptic membrane exocytosis 2 	ENSMUST00000042917.9|Rims2|ENSMUSG00000037386.9|regulating synaptic membrane exocytosis 2
mm10_v2_chr11_-_86257518_86257550	0.0332632	AUGGCUU	ENSMUST00000136469.1|Ints2|ENSMUSG00000018068.7|integrator complex subunit 2 	ENSMUST00000018212.6|Ints2|ENSMUSG00000018068.7|integrator complex subunit 2
mm10_v2_chr15_-_64312636_64312692	0.0327988	AUGGCUU	ENSMUST00000177083.1|Asap1|ENSMUSG00000022377.10|ArfGAP with SH3 domain, ankyrin repeat and PH domain1 	ENSMUST00000177371.1|Asap1|ENSMUSG00000022377.10|ArfGAP with SH3 domain, ankyrin repeat and PH domain1
mm10_v2_chr2_-_126876209_126876267	0.0325066	AUGGCUU	ENSMUST00000103224.3|Trpm7|ENSMUSG00000027365.8|transient receptor potential cation channel, subfamily M, member 7
mm10_v2_chr9_+_21165714_21165762	0.0321616	AUGGCUU	ENSMUST00000039413.8|Pde4a|ENSMUSG00000032177.10|phosphodiesterase 4A, cAMP specific
mm10_v2_chr1_+_92831614_92831645	0.0313937	AUGGCUU	ENSMUST00000045970.6|Gpc1|ENSMUSG00000034220.6|glypican 1
mm10_v2_chr4_-_9643638_9643717	0.0308037	AUGGCUU	ENSMUST00000108333.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000108334.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000108335.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000152526.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000103004.3|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase
mm10_v2_chr18_-_79109391_79109510	0.0307644	AUGGCUU	ENSMUST00000025430.8|Setbp1|ENSMUSG00000024548.9|SET binding protein 1 	ENSMUST00000161465.2|Setbp1|ENSMUSG00000024548.9|SET binding protein 1
mm10_v2_chr9_+_68653761_68653786	0.030621	AUGGCUU	ENSMUST00000034766.7|Rora|ENSMUSG00000032238.11|RAR-related orphan receptor alpha
mm10_v2_chr13_-_46727932_46728005	0.0304732	AUGGCUU	ENSMUST00000021803.9|Nup153|ENSMUSG00000021374.9|nucleoporin 153
mm10_v2_chr12_+_29528382_29528468	0.0303588	AUGGCUU	ENSMUST00000049784.9|Myt1l|ENSMUSG00000061911.8|myelin transcription factor 1-like
mm10_v2_chr3_-_133544390_133544412	0.0297704	AUGGCUU	ENSMUST00000098603.3|Tet2|ENSMUSG00000040943.8|tet methylcytosine dioxygenase 2
mm10_v2_chr1_-_152766281_152766319	0.0296912	AUGGCUU	ENSMUST00000111859.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1 	ENSMUST00000148865.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr19_-_55315980_55316038	0.0294213	AUGGCUU	ENSMUST00000076891.5|Zdhhc6|ENSMUSG00000024982.9|zinc finger, DHHC domain containing 6
mm10_v2_chr4_-_141723401_141723436	0.0289686	AUGGCUU	ENSMUST00000102484.4|Ddi2|ENSMUSG00000078515.3|DNA-damage inducible protein 2 	ENSMUST00000177592.1|Rsc1a1|ENSMUSG00000040715.11|regulatory solute carrier protein, family 1, member 1
mm10_v2_chr2_-_130629994_130630038	0.0287848	AUGGCUU	ENSMUST00000110262.1|Fastkd5|ENSMUSG00000079043.2|FAST kinase domains 5 	ENSMUST00000028761.4|Ubox5|ENSMUSG00000027300.9|U box domain containing 5
mm10_v2_chr15_-_28025834_28025879	0.0284557	AUGGCUU	ENSMUST00000090247.5|Trio|ENSMUSG00000022263.9|triple functional domain (PTPRF interacting)
mm10_v2_chr6_-_83441674_83441684	0.0281334	AUGGCUU	ENSMUST00000089622.4|Tet3|ENSMUSG00000034832.9|tet methylcytosine dioxygenase 3
mm10_v2_chr13_+_83504032_83504050	0.0280843	AUGGCUU	ENSMUST00000163888.1|Mef2c|ENSMUSG00000005583.10|myocyte enhancer factor 2C 	ENSMUST00000005722.7|Mef2c|ENSMUSG00000005583.10|myocyte enhancer factor 2C
mm10_v2_chr14_+_69555377_69555481	0.0279711	AUGGCUU	ENSMUST00000185072.1|Gm21685|ENSMUSG00000022066.10|predicted gene, 21685 	ENSMUST00000168356.1|Gm21685|ENSMUSG00000022066.10|predicted gene, 21685 	ENSMUST00000064846.7|Gm21685|ENSMUSG00000022066.10|predicted gene, 21685
mm10_v2_chr7_+_25267669_25267723	0.027616	AUGGCUU	ENSMUST00000169266.1|Cic|ENSMUSG00000005442.7|capicua homolog (Drosophila)
mm10_v2_chr9_+_94669876_94669928	0.0272428	AUGGCUU	ENSMUST00000033463.9|Slc9a9|ENSMUSG00000031129.9|solute carrier family 9 (sodium/hydrogen exchanger), member 9
mm10_v2_chr10_-_31609184_31609184	0.0266847	AUGGCUU	ENSMUST00000081989.6|Rnf217|ENSMUSG00000063760.8|ring finger protein 217
mm10_v2_chr17_-_87797994_87798049	0.0266232	AUGGCUU	ENSMUST00000055221.7|Kcnk12|ENSMUSG00000050138.7|potassium channel, subfamily K, member 12
mm10_v2_chr14_+_48120841_48120869	0.0264849	AUGGCUU	ENSMUST00000073150.4|Peli2|ENSMUSG00000021846.8|pellino 2
mm10_v2_chr10_-_68278713_68278735	0.0263457	AUGGCUU	ENSMUST00000020106.7|Arid5b|ENSMUSG00000019947.9|AT rich interactive domain 5B (MRF1-like)
mm10_v2_chr12_-_100725028_100725081	0.0258942	AUGGCUU	ENSMUST00000043599.6|Rps6ka5|ENSMUSG00000021180.8|ribosomal protein S6 kinase, polypeptide 5
mm10_v2_chr5_-_122049822_122049882	0.0252791	AUGGCUU	ENSMUST00000111752.3|Cux2|ENSMUSG00000042589.12|cut-like homeobox 2
mm10_v2_chr9_+_78113275_78113346	0.025161	AUGGCUU	ENSMUST00000009972.5|Ick|ENSMUSG00000009828.9|intestinal cell kinase 	ENSMUST00000117330.1|Ick|ENSMUSG00000009828.9|intestinal cell kinase 	ENSMUST00000044551.7|Ick|ENSMUSG00000009828.9|intestinal cell kinase
mm10_v2_chr13_-_98815408_98815449	0.0248461	AUGGCUU	ENSMUST00000040340.8|Fcho2|ENSMUSG00000041685.9|FCH domain only 2 	ENSMUST00000099277.4|Fcho2|ENSMUSG00000041685.9|FCH domain only 2 	ENSMUST00000179563.1|Fcho2|ENSMUSG00000041685.9|FCH domain only 2 	ENSMUST00000109403.1|Fcho2|ENSMUSG00000041685.9|FCH domain only 2
mm10_v2_chr19_+_42170562_42170600	0.0248144	AUGGCUU	ENSMUST00000169536.1|Zfyve27|ENSMUSG00000018820.7|zinc finger, FYVE domain containing 27 	ENSMUST00000099443.4|Zfyve27|ENSMUSG00000018820.7|zinc finger, FYVE domain containing 27
mm10_v2_chr18_-_46280820_46280850	0.0246401	AUGGCUU	ENSMUST00000025354.3|Pggt1b|ENSMUSG00000024477.3|protein geranylgeranyltransferase type I, beta subunit
mm10_v2_chr10_-_127288851_127288918	0.0240015	AUGGCUU	ENSMUST00000156208.1|Mbd6|ENSMUSG00000025409.8|methyl-CpG binding domain protein 6 	ENSMUST00000026476.6|Mbd6|ENSMUSG00000025409.8|methyl-CpG binding domain protein 6
mm10_v2_chr14_+_69337174_69337198	0.0239544	AUGGCUU	ENSMUST00000184973.1|Entpd4|ENSMUSG00000095463.2|ectonucleoside triphosphate diphosphohydrolase 4 	ENSMUST00000184314.1|Entpd4|ENSMUSG00000095463.2|ectonucleoside triphosphate diphosphohydrolase 4
mm10_v2_chr3_-_110142996_110143010	0.0236665	AUGGCUU	ENSMUST00000156177.2|Ntng1|ENSMUSG00000059857.9|netrin G1
mm10_v2_chr7_+_120677579_120677630	0.0235104	AUGGCUU	ENSMUST00000060175.6|BC030336|ENSMUSG00000046096.6|cDNA sequence BC030336
mm10_v2_chr5_-_20882072_20882124	0.023462	AUGGCUU	ENSMUST00000118174.1|Phtf2|ENSMUSG00000039987.9|putative homeodomain transcription factor 2
mm10_v2_chr3_-_56183678_56183701	0.0232545	AUGGCUU	ENSMUST00000029374.6|Nbea|ENSMUSG00000027799.8|neurobeachin
mm10_v2_chr7_-_4501636_4501711	0.0232179	AUGGCUU	ENSMUST00000013886.8|Ppp1r12c|ENSMUSG00000019254.10|protein phosphatase 1, regulatory (inhibitor) subunit 12C
mm10_v2_chr8_+_35587780_35587825	0.0231433	AUGGCUU	ENSMUST00000037666.5|Mfhas1|ENSMUSG00000070056.5|malignant fibrous histiocytoma amplified sequence 1
mm10_v2_chr2_-_53191214_53191284	0.0227656	AUGGCUU	ENSMUST00000076313.6|Prpf40a|ENSMUSG00000061136.7|PRP40 pre-mRNA processing factor 40 homolog A (yeast) 	ENSMUST00000125243.1|Prpf40a|ENSMUSG00000061136.7|PRP40 pre-mRNA processing factor 40 homolog A (yeast)
mm10_v2_chr3_+_145576196_145576266	0.0225709	AUGGCUU	ENSMUST00000098534.4|Znhit6|ENSMUSG00000074182.4|zinc finger, HIT type 6
mm10_v2_chr14_+_21499770_21499883	0.0223635	AUGGCUU	ENSMUST00000182855.1|Kat6b|ENSMUSG00000021767.10|K(lysine) acetyltransferase 6B 	ENSMUST00000069648.7|Kat6b|ENSMUSG00000021767.10|K(lysine) acetyltransferase 6B 	ENSMUST00000182405.1|Kat6b|ENSMUSG00000021767.10|K(lysine) acetyltransferase 6B
mm10_v2_chr5_+_144100387_144100436	0.0219906	AUGGCUU	ENSMUST00000041804.7|Lmtk2|ENSMUSG00000038970.7|lemur tyrosine kinase 2
mm10_v2_chr12_+_16894894_16894978	0.0218865	AUGGCUU	ENSMUST00000020904.6|Rock2|ENSMUSG00000020580.9|Rho-associated coiled-coil containing protein kinase 2
mm10_v2_chr7_-_38019505_38019552	0.0217394	AUGGCUU	ENSMUST00000085513.4|Uri1|ENSMUSG00000030421.8|URI1, prefoldin-like chaperone
mm10_v2_chr15_+_9140527_9140621	0.0217112	AUGGCUU	ENSMUST00000090380.4|Lmbrd2|ENSMUSG00000039704.6|LMBR1 domain containing 2
mm10_v2_chr16_+_27388869_27388980	0.0214803	AUGGCUU	ENSMUST00000100026.3|Ccdc50|ENSMUSG00000038127.8|coiled-coil domain containing 50 	ENSMUST00000039443.7|Ccdc50|ENSMUSG00000038127.8|coiled-coil domain containing 50 	ENSMUST00000096127.4|Ccdc50|ENSMUSG00000038127.8|coiled-coil domain containing 50
mm10_v2_chr19_-_32388462_32388512	0.0213898	AUGGCUU	ENSMUST00000099514.3|Sgms1|ENSMUSG00000040451.11|sphingomyelin synthase 1
mm10_v2_chr3_+_52268337_52268388	0.0212803	AUGGCUU	ENSMUST00000053764.5|Foxo1|ENSMUSG00000044167.5|forkhead box O1
mm10_v2_chr18_-_15063560_15063617	0.0206865	AUGGCUU	ENSMUST00000168989.1|Kctd1|ENSMUSG00000036225.8|potassium channel tetramerisation domain containing 1
mm10_v2_chr8_+_128359065_128359085	0.0206643	AUGGCUU	ENSMUST00000026917.8|Nrp1|ENSMUSG00000025810.8|neuropilin 1
mm10_v2_chr19_+_47178820_47178997	0.0205986	AUGGCUU	ENSMUST00000111808.3|Neurl1a|ENSMUSG00000006435.9|neuralized homolog 1A (Drosophila)
mm10_v2_chr10_+_83543941_83544007	0.0201951	AUGGCUU	ENSMUST00000038388.5|A230046K03Rik|ENSMUSG00000034560.5|RIKEN cDNA A230046K03 gene
mm10_v2_chr7_+_18991245_18991319	0.019633	AUGGCUU	ENSMUST00000130268.1|Mypop|ENSMUSG00000048481.9|Myb-related transcription factor, partner of profilin 	ENSMUST00000059331.8|Mypop|ENSMUSG00000048481.9|Myb-related transcription factor, partner of profilin 	ENSMUST00000131087.1|Mypop|ENSMUSG00000048481.9|Myb-related transcription factor, partner of profilin
mm10_v2_chr6_-_35539765_35539888	0.0195525	AUGGCUU	ENSMUST00000031866.5|Mtpn|ENSMUSG00000029840.5|myotrophin
mm10_v2_chr16_-_50432340_50432409	0.0194549	AUGGCUU	ENSMUST00000066037.6|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089399.4|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089404.3|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000114477.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000138166.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila)
mm10_v2_chr8_-_109608623_109608673	0.0193752	AUGGCUU	ENSMUST00000123605.1|Dhodh|ENSMUSG00000031730.11|dihydroorotate dehydrogenase 	ENSMUST00000143900.1|Dhodh|ENSMUSG00000031730.11|dihydroorotate dehydrogenase 	ENSMUST00000069058.8|Dhodh|ENSMUSG00000031730.11|dihydroorotate dehydrogenase 	ENSMUST00000128350.1|Dhodh|ENSMUSG00000031730.11|dihydroorotate dehydrogenase
mm10_v2_chr1_+_191717834_191717904	0.0189879	AUGGCUU	ENSMUST00000110855.1|Lpgat1|ENSMUSG00000026623.10|lysophosphatidylglycerol acyltransferase 1 	ENSMUST00000133076.1|Lpgat1|ENSMUSG00000026623.10|lysophosphatidylglycerol acyltransferase 1
mm10_v2_chr1_+_82586942_82586988	0.0186402	AUGGCUU	ENSMUST00000113457.2|Col4a3|ENSMUSG00000079465.2|collagen, type IV, alpha 3
mm10_v2_chr9_+_122117338_122117367	0.018633	AUGGCUU	ENSMUST00000120173.1|Snrk|ENSMUSG00000038145.10|SNF related kinase 	ENSMUST00000134949.1|Snrk|ENSMUSG00000038145.10|SNF related kinase 	ENSMUST00000119215.1|Snrk|ENSMUSG00000038145.10|SNF related kinase
mm10_v2_chr17_+_88440711_88440741	0.0185675	AUGGCUU	ENSMUST00000112238.2|Foxn2|ENSMUSG00000034998.12|forkhead box N2 	ENSMUST00000155640.1|Foxn2|ENSMUSG00000034998.12|forkhead box N2
mm10_v2_chr11_-_86544754_86544805	0.0184734	AUGGCUU	ENSMUST00000138810.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000058286.2|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000154617.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1
mm10_v2_chr7_+_49910112_49910146	0.0184459	AUGGCUU	ENSMUST00000056442.5|Slc6a5|ENSMUSG00000039728.8|solute carrier family 6 (neurotransmitter transporter, glycine), member 5
mm10_v2_chr3_-_84304762_84304809	0.0180999	AUGGCUU	ENSMUST00000107692.1|Trim2|ENSMUSG00000027993.10|tripartite motif-containing 2
mm10_v2_chr12_+_111039334_111039400	0.0180593	AUGGCUU	ENSMUST00000084968.7|Rcor1|ENSMUSG00000037896.11|REST corepressor 1
mm10_v2_chr8_-_109737714_109737786	0.0176774	AUGGCUU	ENSMUST00000093162.3|Atxn1l|ENSMUSG00000069895.3|ataxin 1-like
mm10_v2_chr3_-_9610074_9610086	0.0176171	AUGGCUU	ENSMUST00000041124.7|Zfp704|ENSMUSG00000040209.7|zinc finger protein 704
mm10_v2_chr11_-_106612928_106612973	0.0174796	AUGGCUU	ENSMUST00000042780.7|Tex2|ENSMUSG00000040548.9|testis expressed gene 2
mm10_v2_chr4_+_83525540_83525616	0.0172394	AUGGCUU	ENSMUST00000053414.6|Ccdc171|ENSMUSG00000052407.10|coiled-coil domain containing 171 	ENSMUST00000126429.1|Ccdc171|ENSMUSG00000052407.10|coiled-coil domain containing 171
mm10_v2_chr16_-_58523349_58523426	0.0170081	AUGGCUU	ENSMUST00000137035.1|St3gal6|ENSMUSG00000022747.10|ST3 beta-galactoside alpha-2,3-sialyltransferase 6
mm10_v2_chr1_-_182341585_182341625	0.0167655	AUGGCUU	ENSMUST00000051431.4|Fbxo28|ENSMUSG00000047539.4|F-box protein 28
mm10_v2_chr6_-_13608011_13608100	0.0163089	AUGGCUU	ENSMUST00000031554.2|Tmem168|ENSMUSG00000029569.3|transmembrane protein 168
mm10_v2_chr2_-_167492826_167492891	0.0159127	AUGGCUU	ENSMUST00000109211.2|Spata2|ENSMUSG00000047030.9|spermatogenesis associated 2 	ENSMUST00000057627.9|Spata2|ENSMUSG00000047030.9|spermatogenesis associated 2
mm10_v2_chr6_-_11907419_11907484	0.0156585	AUGGCUU	ENSMUST00000031637.5|Ndufa4|ENSMUSG00000029632.5|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4
mm10_v2_chr7_-_121707253_121707460	0.0147609	AUGGCUU	ENSMUST00000046929.6|Usp31|ENSMUSG00000063317.6|ubiquitin specific peptidase 31
mm10_v2_chr13_+_104178797_104178872	0.0146638	AUGGCUU	ENSMUST00000022225.5|Trim23|ENSMUSG00000021712.8|tripartite motif-containing 23 	ENSMUST00000069187.5|Trim23|ENSMUSG00000021712.8|tripartite motif-containing 23
mm10_v2_chr9_-_108263887_108263965	0.0146516	AUGGCUU	ENSMUST00000166905.1|Dag1|ENSMUSG00000039952.9|dystroglycan 1 	ENSMUST00000080435.2|Dag1|ENSMUSG00000039952.9|dystroglycan 1
mm10_v2_chr6_+_72347301_72347379	0.0144212	AUGGCUU	ENSMUST00000077783.3|0610030E20Rik|ENSMUSG00000058706.3|RIKEN cDNA 0610030E20 gene
mm10_v2_chr11_+_94990996_94991035	0.0144142	AUGGCUU	ENSMUST00000038696.5|Ppp1r9b|ENSMUSG00000038976.6|protein phosphatase 1, regulatory subunit 9B
mm10_v2_chr11_+_74619594_74619643	0.0138617	AUGGCUU	ENSMUST00000100866.2|E130309D14Rik|ENSMUSG00000069814.6|RIKEN cDNA E130309D14 gene
mm10_v2_chr4_+_115839192_115839244	0.0134701	AUGGCUU	ENSMUST00000019677.5|Mknk1|ENSMUSG00000028708.10|MAP kinase-interacting serine/threonine kinase 1 	ENSMUST00000144427.1|Mknk1|ENSMUSG00000028708.10|MAP kinase-interacting serine/threonine kinase 1 	ENSMUST00000106513.3|Mknk1|ENSMUSG00000028708.10|MAP kinase-interacting serine/threonine kinase 1 	ENSMUST00000130819.1|Mknk1|ENSMUSG00000028708.10|MAP kinase-interacting serine/threonine kinase 1 	ENSMUST00000151203.1|Mknk1|ENSMUSG00000028708.10|MAP kinase-interacting serine/threonine kinase 1 	ENSMUST00000140315.1|Mknk1|ENSMUSG00000028708.10|MAP kinase-interacting serine/threonine kinase 1
mm10_v2_chr4_-_43562397_43562430	0.0133855	AUGGCUU	ENSMUST00000030187.7|Tln1|ENSMUSG00000028465.10|talin 1
mm10_v2_chrX_-_20950597_20950613	0.013145	AUGGCUU	ENSMUST00000009550.7|Elk1|ENSMUSG00000009406.7|ELK1, member of ETS oncogene family
mm10_v2_chr17_-_27167759_27167777	0.0129208	AUGGCUU	ENSMUST00000025046.2|Ip6k3|ENSMUSG00000024210.2|inositol hexaphosphate kinase 3
mm10_v2_chr12_-_64965496_64965538	0.0126114	AUGGCUU	ENSMUST00000021331.7|Klhl28|ENSMUSG00000020948.8|kelch-like 28
mm10_v2_chr2_+_75832168_75832194	0.0125943	AUGGCUU	ENSMUST00000047232.7|Agps|ENSMUSG00000042410.9|alkylglycerone phosphate synthase 	ENSMUST00000111952.2|Agps|ENSMUSG00000042410.9|alkylglycerone phosphate synthase
mm10_v2_chr2_-_168206875_168206922	0.0124295	AUGGCUU	ENSMUST00000057793.4|Adnp|ENSMUSG00000051149.9|activity-dependent neuroprotective protein
mm10_v2_chr13_+_47043499_47043591	0.0120261	AUGGCUU	ENSMUST00000037025.8|Kdm1b|ENSMUSG00000038080.10|lysine (K)-specific demethylase 1B 	ENSMUST00000143868.1|Kdm1b|ENSMUSG00000038080.10|lysine (K)-specific demethylase 1B
mm10_v2_chr13_-_98891036_98891063	0.0119456	AUGGCUU	ENSMUST00000109399.2|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr14_-_60086832_60086890	0.0116132	AUGGCUU	ENSMUST00000080368.5|Atp8a2|ENSMUSG00000021983.9|ATPase, aminophospholipid transporter-like, class I, type 8A, member 2
mm10_v2_chr4_-_70534904_70534987	0.0114564	AUGGCUU	ENSMUST00000107359.2|Megf9|ENSMUSG00000039270.3|multiple EGF-like-domains 9
mm10_v2_chr18_-_82692734_82692933	0.0113459	AUGGCUU	ENSMUST00000182122.1|Zfp236|ENSMUSG00000041258.10|zinc finger protein 236 	ENSMUST00000171071.2|Zfp236|ENSMUSG00000041258.10|zinc finger protein 236
mm10_v2_chr7_+_97579868_97579901	0.0112857	AUGGCUU	ENSMUST00000042399.7|Rsf1|ENSMUSG00000035623.8|remodeling and spacing factor 1 	ENSMUST00000107153.1|Rsf1|ENSMUSG00000035623.8|remodeling and spacing factor 1
mm10_v2_chr4_-_41569502_41569551	0.0111615	AUGGCUU	ENSMUST00000108049.2|Fam219a|ENSMUSG00000028439.8|family with sequence similarity 219, member A 	ENSMUST00000108052.3|Fam219a|ENSMUSG00000028439.8|family with sequence similarity 219, member A 	ENSMUST00000108050.1|Fam219a|ENSMUSG00000028439.8|family with sequence similarity 219, member A
mm10_v2_chr18_+_64254359_64254387	0.0105449	AUGGCUU	ENSMUST00000025477.7|St8sia3|ENSMUSG00000056812.7|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
mm10_v2_chr4_+_28813125_28813136	0.0103159	AUGGCUU	ENSMUST00000029964.5|Epha7|ENSMUSG00000028289.6|Eph receptor A7 	ENSMUST00000080934.4|Epha7|ENSMUSG00000028289.6|Eph receptor A7
mm10_v2_chr10_-_80656485_80656519	0.0101749	AUGGCUU	ENSMUST00000126980.1|Btbd2|ENSMUSG00000003344.8|BTB (POZ) domain containing 2
mm10_v2_chr11_-_65269941_65269954	0.010147	AUGGCUU	ENSMUST00000102635.3|Myocd|ENSMUSG00000020542.12|myocardin
mm10_v2_chr16_+_52031549_52031570	0.0101105	AUGGCUU	ENSMUST00000114471.1|Cblb|ENSMUSG00000022637.10|Casitas B-lineage lymphoma b
mm10_v2_chr11_-_86357570_86357614	0.0100908	AUGGCUU	ENSMUST00000043624.8|Med13|ENSMUSG00000034297.8|mediator complex subunit 13
mm10_v2_chr13_+_16014457_16014475	0.0100893	AUGGCUU	ENSMUST00000164993.1|Inhba|ENSMUSG00000041324.7|inhibin beta-A
mm10_v2_chr17_-_24644933_24644976	0.0100844	AUGGCUU	ENSMUST00000019684.5|Slc9a3r2|ENSMUSG00000002504.8|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm10_v2_chr11_+_44617310_44617336	0.00978921	AUGGCUU	ENSMUST00000081265.5|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000101326.3|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000109268.1|Ebf1|ENSMUSG00000057098.8|early B cell factor 1
mm10_v2_chr15_-_77307043_77307058	0.00943558	AUGGCUU	ENSMUST00000048145.5|Rbfox2|ENSMUSG00000033565.10|RNA binding protein, fox-1 homolog (C. elegans) 2 	ENSMUST00000171751.1|Rbfox2|ENSMUSG00000033565.10|RNA binding protein, fox-1 homolog (C. elegans) 2
mm10_v2_chr2_+_119972699_119972746	0.00937329	AUGGCUU	ENSMUST00000066058.7|Mapkbp1|ENSMUSG00000033902.11|mitogen-activated protein kinase binding protein 1
mm10_v2_chr11_-_65788275_65788318	0.00928681	AUGGCUU	ENSMUST00000152096.1|Map2k4|ENSMUSG00000033352.5|mitogen-activated protein kinase kinase 4 	ENSMUST00000046963.3|Map2k4|ENSMUSG00000033352.5|mitogen-activated protein kinase kinase 4
mm10_v2_chr14_-_57746044_57746144	0.00907142	AUGGCUU	ENSMUST00000173990.1|Lats2|ENSMUSG00000021959.9|large tumor suppressor 2 	ENSMUST00000022531.7|Lats2|ENSMUSG00000021959.9|large tumor suppressor 2
mm10_v2_chr13_-_89742490_89742515	0.00850215	AUGGCUU	ENSMUST00000109546.2|Vcan|ENSMUSG00000021614.10|versican
mm10_v2_chr10_+_58255465_58255539	0.00849974	AUGGCUU	ENSMUST00000057659.7|Gcc2|ENSMUSG00000038039.7|GRIP and coiled-coil domain containing 2 	ENSMUST00000162041.1|Gcc2|ENSMUSG00000038039.7|GRIP and coiled-coil domain containing 2 	ENSMUST00000162860.1|Gcc2|ENSMUSG00000038039.7|GRIP and coiled-coil domain containing 2
mm10_v2_chr18_+_21001292_21001341	0.00839206	AUGGCUU	ENSMUST00000072847.5|Rnf138|ENSMUSG00000024317.8|ring finger protein 138 	ENSMUST00000052396.5|Rnf138|ENSMUSG00000024317.8|ring finger protein 138
mm10_v2_chr12_+_76370266_76370266	0.0083033	AUGGCUU	ENSMUST00000042779.3|Zbtb1|ENSMUSG00000033454.6|zinc finger and BTB domain containing 1
mm10_v2_chr17_-_83631892_83631934	0.00823894	AUGGCUU	ENSMUST00000051482.1|Kcng3|ENSMUSG00000045053.1|potassium voltage-gated channel, subfamily G, member 3
mm10_v2_chr10_-_54075730_54075796	0.00803778	AUGGCUU	ENSMUST00000105469.1|Man1a|ENSMUSG00000003746.9|mannosidase 1, alpha 	ENSMUST00000003843.8|Man1a|ENSMUSG00000003746.9|mannosidase 1, alpha
mm10_v2_chr3_+_122245557_122245578	0.00731345	AUGGCUU	ENSMUST00000029769.7|Gclm|ENSMUSG00000028124.9|glutamate-cysteine ligase, modifier subunit
mm10_v2_chr8_-_67974567_67974596	0.00730455	AUGGCUU	ENSMUST00000098696.3|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000038959.9|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000093469.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr1_+_59764264_59764286	0.00722658	AUGGCUU	ENSMUST00000087435.5|Bmpr2|ENSMUSG00000067336.5|bone morphogenetic protein receptor, type II (serine/threonine kinase)
mm10_v2_chr18_-_20896078_20896078	0.00720469	AUGGCUU	ENSMUST00000025177.6|Trappc8|ENSMUSG00000033382.7|trafficking protein particle complex 8 	ENSMUST00000097658.1|Trappc8|ENSMUSG00000033382.7|trafficking protein particle complex 8
mm10_v2_chr8_+_109868586_109868611	0.00688162	AUGGCUU	ENSMUST00000179721.1|Phlpp2|ENSMUSG00000031732.6|PH domain and leucine rich repeat protein phosphatase 2 	ENSMUST00000034175.4|Phlpp2|ENSMUSG00000031732.6|PH domain and leucine rich repeat protein phosphatase 2
mm10_v2_chr8_+_11758329_11758375	0.00677291	AUGGCUU	ENSMUST00000074856.6|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7) 	ENSMUST00000098938.2|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7)
mm10_v2_chr10_-_81167896_81167923	0.00672782	AUGGCUU	ENSMUST00000005064.7|Pias4|ENSMUSG00000004934.7|protein inhibitor of activated STAT 4
mm10_v2_chr2_+_163438455_163438536	0.00663889	AUGGCUU	ENSMUST00000109420.3|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1 	ENSMUST00000109421.3|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1 	ENSMUST00000018087.6|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1 	ENSMUST00000137070.1|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1
mm10_v2_chr3_-_107696462_107696574	0.00644926	AUGGCUU	ENSMUST00000029490.8|Ahcyl1|ENSMUSG00000027893.8|S-adenosylhomocysteine hydrolase-like 1
mm10_v2_chr2_+_33216051_33216084	0.00640507	AUGGCUU	ENSMUST00000004208.5|Angptl2|ENSMUSG00000004105.6|angiopoietin-like 2
mm10_v2_chr14_+_47276910_47276936	0.00639982	AUGGCUU	ENSMUST00000065562.4|Socs4|ENSMUSG00000048379.8|suppressor of cytokine signaling 4
mm10_v2_chr5_+_113490447_113490548	0.00638578	AUGGCUU	ENSMUST00000094452.3|Wscd2|ENSMUSG00000063430.8|WSC domain containing 2
mm10_v2_chr1_-_105356658_105356714	0.00625733	AUGGCUU	ENSMUST00000058688.5|Rnf152|ENSMUSG00000047496.5|ring finger protein 152 	ENSMUST00000172299.1|Rnf152|ENSMUSG00000047496.5|ring finger protein 152
mm10_v2_chr9_+_59750876_59750918	0.0062366	AUGGCUU	ENSMUST00000136740.1|Myo9a|ENSMUSG00000039585.9|myosin IXa 	ENSMUST00000135298.1|Myo9a|ENSMUSG00000039585.9|myosin IXa 	ENSMUST00000128341.1|Myo9a|ENSMUSG00000039585.9|myosin IXa
mm10_v2_chr17_+_25809085_25809171	0.00618356	AUGGCUU	ENSMUST00000045692.7|Fbxl16|ENSMUSG00000025738.7|F-box and leucine-rich repeat protein 16
mm10_v2_chr10_+_126978690_126978749	0.00610462	AUGGCUU	ENSMUST00000105256.2|Ctdsp2|ENSMUSG00000078429.2|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
mm10_v2_chr10_-_75932468_75932502	0.0060433	AUGGCUU	ENSMUST00000120281.1|Mmp11|ENSMUSG00000000901.9|matrix metallopeptidase 11 	ENSMUST00000000924.6|Mmp11|ENSMUSG00000000901.9|matrix metallopeptidase 11
mm10_v2_chr8_+_85036906_85036925	0.00591646	AUGGCUU	ENSMUST00000093360.4|Tnpo2|ENSMUSG00000031691.7|transportin 2 (importin 3, karyopherin beta 2b)
mm10_v2_chr15_+_88751649_88751661	0.00574977	AUGGCUU	ENSMUST00000041297.8|Zbed4|ENSMUSG00000034333.9|zinc finger, BED domain containing 4
mm10_v2_chr5_+_64803513_64803530	0.00569686	AUGGCUU	ENSMUST00000165536.1|Klf3|ENSMUSG00000029178.8|Kruppel-like factor 3 (basic)
mm10_v2_chr1_+_131910458_131910539	0.00556348	AUGGCUU	ENSMUST00000062264.6|Nucks1|ENSMUSG00000026434.6|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm10_v2_chr2_+_32727682_32727712	0.00528094	AUGGCUU	ENSMUST00000113242.2|Sh2d3c|ENSMUSG00000059013.6|SH2 domain containing 3C
mm10_v2_chr11_+_21091291_21091339	0.00524522	AUGGCUU	ENSMUST00000093290.5|Peli1|ENSMUSG00000020134.7|pellino 1
mm10_v2_chr3_+_116007457_116007540	0.00524377	AUGGCUU	ENSMUST00000029575.5|Extl2|ENSMUSG00000027963.8|exostoses (multiple)-like 2 	ENSMUST00000106501.1|Extl2|ENSMUSG00000027963.8|exostoses (multiple)-like 2
mm10_v2_chrX_-_57338598_57338729	0.00509369	AUGGCUU	ENSMUST00000033468.4|Arhgef6|ENSMUSG00000031133.6|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6 	ENSMUST00000114736.1|Arhgef6|ENSMUSG00000031133.6|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6
mm10_v2_chr8_-_60983215_60983319	0.00505803	AUGGCUU	ENSMUST00000004430.7|Clcn3|ENSMUSG00000004319.9|chloride channel 3 	ENSMUST00000110301.1|Clcn3|ENSMUSG00000004319.9|chloride channel 3 	ENSMUST00000093490.2|Clcn3|ENSMUSG00000004319.9|chloride channel 3
mm10_v2_chr6_+_146724957_146725036	0.00504082	AUGGCUU	ENSMUST00000001675.7|Stk38l|ENSMUSG00000001630.7|serine/threonine kinase 38 like 	ENSMUST00000111644.1|Stk38l|ENSMUSG00000001630.7|serine/threonine kinase 38 like
mm10_v2_chr1_+_165763746_165763784	0.00502643	AUGGCUU	ENSMUST00000111432.3|Creg1|ENSMUSG00000040713.6|cellular repressor of E1A-stimulated genes 1
mm10_v2_chr3_-_10331358_10331439	0.00496861	AUGGCUU	ENSMUST00000065938.8|Impa1|ENSMUSG00000027531.10|inositol (myo)-1(or 4)-monophosphatase 1 	ENSMUST00000118410.1|Impa1|ENSMUSG00000027531.10|inositol (myo)-1(or 4)-monophosphatase 1
mm10_v2_chrX_+_166238901_166238914	0.00489142	AUGGCUU	ENSMUST00000112235.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b
mm10_v2_chr12_-_26415256_26415303	0.00479693	AUGGCUU	ENSMUST00000020971.6|Rnf144a|ENSMUSG00000020642.6|ring finger protein 144A 	ENSMUST00000062149.4|Rnf144a|ENSMUSG00000020642.6|ring finger protein 144A
mm10_v2_chr17_+_93199348_93199422	0.00474327	AUGGCUU	ENSMUST00000064775.6|Adcyap1|ENSMUSG00000024256.6|adenylate cyclase activating polypeptide 1
mm10_v2_chr8_+_105276438_105276482	0.00460266	AUGGCUU	ENSMUST00000014920.6|Nol3|ENSMUSG00000014776.6|nucleolar protein 3 (apoptosis repressor with CARD domain)
mm10_v2_chr2_+_166805506_166805605	0.00411939	AUGGCUU	ENSMUST00000099078.3|Arfgef2|ENSMUSG00000074582.4|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm10_v2_chr2_+_156196642_156196775	0.00382546	AUGGCUU	ENSMUST00000037401.8|Phf20|ENSMUSG00000038116.10|PHD finger protein 20
mm10_v2_chr1_-_157412576_157412621	0.00374858	AUGGCUU	ENSMUST00000078308.6|Rasal2|ENSMUSG00000070565.5|RAS protein activator like 2 	ENSMUST00000139470.1|Rasal2|ENSMUSG00000070565.5|RAS protein activator like 2
mm10_v2_chr6_+_8948608_8948619	0.00374454	AUGGCUU	ENSMUST00000160300.1|Nxph1|ENSMUSG00000046178.3|neurexophilin 1
mm10_v2_chr13_-_119790805_119790805	0.00374072	AUGGCUU	ENSMUST00000178271.1|Zfp131|ENSMUSG00000094870.1|zinc finger protein 131 	ENSMUST00000177916.1|Zfp131|ENSMUSG00000094870.1|zinc finger protein 131
mm10_v2_chr1_+_36068371_36068400	0.00354709	AUGGCUU	ENSMUST00000088174.3|Hs6st1|ENSMUSG00000045216.6|heparan sulfate 6-O-sulfotransferase 1
mm10_v2_chr1_+_127774164_127774238	0.00350134	AUGGCUU	ENSMUST00000027587.8|Ccnt2|ENSMUSG00000026349.8|cyclin T2 	ENSMUST00000112570.1|Ccnt2|ENSMUSG00000026349.8|cyclin T2
mm10_v2_chr11_-_94321957_94321988	0.00334696	AUGGCUU	ENSMUST00000166312.1|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000107821.2|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000021226.7|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000107820.1|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae)
mm10_v2_chr15_+_103240405_103240432	0.00328711	AUGGCUU	ENSMUST00000036004.9|Hnrnpa1|ENSMUSG00000046434.9|heterogeneous nuclear ribonucleoprotein A1 	ENSMUST00000087351.7|Hnrnpa1|ENSMUSG00000046434.9|heterogeneous nuclear ribonucleoprotein A1
mm10_v2_chr4_+_42916647_42916712	0.00326001	AUGGCUU	ENSMUST00000132173.1|N28178|ENSMUSG00000036062.7|expressed sequence N28178 	ENSMUST00000107975.1|N28178|ENSMUSG00000036062.7|expressed sequence N28178
mm10_v2_chrX_-_151096510_151096543	0.00324027	AUGGCUU	ENSMUST00000112683.2|Tsr2|ENSMUSG00000025264.6|TSR2 20S rRNA accumulation 	ENSMUST00000026295.3|Tsr2|ENSMUSG00000025264.6|TSR2 20S rRNA accumulation
mm10_v2_chr8_-_105827190_105827350	0.00319628	AUGGCUU	ENSMUST00000041400.5|Ranbp10|ENSMUSG00000037415.5|RAN binding protein 10
mm10_v2_chr16_+_32430895_32430978	0.00316691	AUGGCUU	ENSMUST00000115137.1|Pcyt1a|ENSMUSG00000005615.8|phosphate cytidylyltransferase 1, choline, alpha isoform 	ENSMUST00000079791.4|Pcyt1a|ENSMUSG00000005615.8|phosphate cytidylyltransferase 1, choline, alpha isoform
mm10_v2_chr19_+_11912389_11912475	0.0030706	AUGGCUU	ENSMUST00000061618.7|Patl1|ENSMUSG00000046139.7|protein associated with topoisomerase II homolog 1 (yeast)
mm10_v2_chr6_-_38299236_38299290	0.00257542	AUGGCUU	ENSMUST00000058524.2|Zc3hav1l|ENSMUSG00000047749.2|zinc finger CCCH-type, antiviral 1-like
mm10_v2_chr4_-_35157404_35157500	0.00231993	AUGGCUU	ENSMUST00000102975.3|Mob3b|ENSMUSG00000073910.4|MOB kinase activator 3B
mm10_v2_chr8_-_41133697_41133755	0.00223371	AUGGCUU	ENSMUST00000155055.1|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1 	ENSMUST00000059115.6|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1 	ENSMUST00000145860.1|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr5_-_5514730_5514830	0.00217735	AUGGCUU	ENSMUST00000115445.1|Cldn12|ENSMUSG00000046798.8|claudin 12 	ENSMUST00000179804.1|Cldn12|ENSMUSG00000046798.8|claudin 12 	ENSMUST00000125110.1|Cldn12|ENSMUSG00000046798.8|claudin 12 	ENSMUST00000115446.1|Cldn12|ENSMUSG00000046798.8|claudin 12
mm10_v2_chr6_+_38551334_38551493	0.00216006	AUGGCUU	ENSMUST00000163047.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae) 	ENSMUST00000161538.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae) 	ENSMUST00000057692.4|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae)
mm10_v2_chr11_+_80209019_80209057	0.00204382	AUGGCUU	ENSMUST00000077451.7|Rhot1|ENSMUSG00000017686.10|ras homolog gene family, member T1 	ENSMUST00000055056.9|Rhot1|ENSMUSG00000017686.10|ras homolog gene family, member T1
mm10_v2_chr7_-_51862216_51862281	0.00203807	AUGGCUU	ENSMUST00000169357.1|Fancf|ENSMUSG00000092118.1|Fanconi anemia, complementation group F
mm10_v2_chr1_-_13372434_13372457	0.00203768	AUGGCUU	ENSMUST00000081713.4|Ncoa2|ENSMUSG00000005886.8|nuclear receptor coactivator 2
mm10_v2_chr14_+_30479565_30479685	0.00200789	AUGGCUU	ENSMUST00000022535.7|Dcp1a|ENSMUSG00000021962.8|DCP1 decapping enzyme homolog A (S. cerevisiae)
mm10_v2_chr7_+_28392916_28393013	0.0019178	AUGGCUU	ENSMUST00000003529.8|Paf1|ENSMUSG00000003437.8|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
mm10_v2_chrX_+_153237748_153237748	0.0016105	AUGGCUU	ENSMUST00000112574.2|Klf8|ENSMUSG00000041649.7|Kruppel-like factor 8
mm10_v2_chr4_-_126468580_126468653	0.00126564	AUGGCUU	ENSMUST00000097888.3|Ago1|ENSMUSG00000041530.10|argonaute RISC catalytic subunit 1
mm10_v2_chr16_-_45844303_45844381	0.00111952	AUGGCUU	ENSMUST00000036355.6|Phldb2|ENSMUSG00000033149.10|pleckstrin homology-like domain, family B, member 2
mm10_v2_chr3_-_69127098_69127113	0.000349938	AUGGCUU	ENSMUST00000029353.2|Kpna4|ENSMUSG00000027782.4|karyopherin (importin) alpha 4
mm10_v2_chr4_+_139380658_139380684	0.000144212	AUGGCUU	ENSMUST00000165860.1|Ubr4|ENSMUSG00000066036.8|ubiquitin protein ligase E3 component n-recognin 4 	ENSMUST00000097822.3|Ubr4|ENSMUSG00000066036.8|ubiquitin protein ligase E3 component n-recognin 4
mm10_v2_chr9_+_96119362_96119437	0.000141823	AUGGCUU	ENSMUST00000085217.5|Gk5|ENSMUSG00000041440.12|glycerol kinase 5 (putative) 	ENSMUST00000122383.1|Gk5|ENSMUSG00000041440.12|glycerol kinase 5 (putative)
mm10_v2_chr9_+_53537021_53537074	3.45056e-05	AUGGCUU	ENSMUST00000035850.7|Npat|ENSMUSG00000033054.7|nuclear protein in the AT region
