mm10_v2_chr5_-_67427794_67427813	0.107477	AUGUGCC	ENSMUST00000169190.1|Bend4|ENSMUSG00000092060.1|BEN domain containing 4
mm10_v2_chr10_+_34483400_34483445	0.0831279	AUGUGCC	ENSMUST00000019913.7|Frk|ENSMUSG00000019779.8|fyn-related kinase 	ENSMUST00000170771.1|Frk|ENSMUSG00000019779.8|fyn-related kinase
mm10_v2_chr17_-_91092715_91092822	0.069017	AUGUGCC	ENSMUST00000160800.2|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000159778.1|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000160844.3|Nrxn1|ENSMUSG00000024109.12|neurexin I
mm10_v2_chr7_+_4460687_4460730	0.0594284	AUGUGCC	ENSMUST00000167298.1|Eps8l1|ENSMUSG00000006154.7|EPS8-like 1 	ENSMUST00000171445.1|Eps8l1|ENSMUSG00000006154.7|EPS8-like 1
mm10_v2_chr8_+_76899772_76899828	0.0584279	AUGUGCC	ENSMUST00000109913.2|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2
mm10_v2_chr18_+_67933257_67933257	0.05765	AUGUGCC	ENSMUST00000063775.3|Ldlrad4|ENSMUSG00000024544.8|low density lipoprotein receptor class A domain containing 4
mm10_v2_chr3_-_58525867_58525873	0.0499786	AUGUGCC	ENSMUST00000029385.7|Serp1|ENSMUSG00000027808.7|stress-associated endoplasmic reticulum protein 1
mm10_v2_chr7_+_102210335_102210445	0.0435328	AUGUGCC	ENSMUST00000140631.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2 	ENSMUST00000120879.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2 	ENSMUST00000146996.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2
mm10_v2_chr2_-_125782834_125782870	0.037453	AUGUGCC	ENSMUST00000053699.6|Secisbp2l|ENSMUSG00000035093.10|SECIS binding protein 2-like
mm10_v2_chr2_-_64097994_64098023	0.0371784	AUGUGCC	ENSMUST00000131615.2|Fign|ENSMUSG00000075324.7|fidgetin
mm10_v2_chr18_+_38418946_38418985	0.0371126	AUGUGCC	ENSMUST00000025293.3|Ndfip1|ENSMUSG00000024425.3|Nedd4 family interacting protein 1
mm10_v2_chr5_+_124540695_124540786	0.0344848	AUGUGCC	ENSMUST00000060226.4|Tmed2|ENSMUSG00000029390.7|transmembrane emp24 domain trafficking protein 2
mm10_v2_chr10_-_128401218_128401234	0.0340861	AUGUGCC	ENSMUST00000042666.5|Slc39a5|ENSMUSG00000039878.6|solute carrier family 39 (metal ion transporter), member 5
mm10_v2_chr16_+_49855618_49855722	0.0338475	AUGUGCC	ENSMUST00000084838.6|Cd47|ENSMUSG00000055447.12|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
mm10_v2_chr10_-_60831571_60831588	0.0335228	AUGUGCC	ENSMUST00000077925.5|Unc5b|ENSMUSG00000020099.7|unc-5 homolog B (C. elegans)
mm10_v2_chr7_-_127824469_127824580	0.0330563	AUGUGCC	ENSMUST00000106267.3|Stx1b|ENSMUSG00000030806.5|syntaxin 1B
mm10_v2_chr11_-_121354337_121354445	0.0323723	AUGUGCC	ENSMUST00000106110.3|Wdr45b|ENSMUSG00000025173.7|WD repeat domain 45B 	ENSMUST00000136797.1|Wdr45b|ENSMUSG00000025173.7|WD repeat domain 45B 	ENSMUST00000026173.6|Wdr45b|ENSMUSG00000025173.7|WD repeat domain 45B
mm10_v2_chr13_-_92530813_92530868	0.0314043	AUGUGCC	ENSMUST00000022217.8|Zfyve16|ENSMUSG00000021706.8|zinc finger, FYVE domain containing 16
mm10_v2_chr14_-_61439831_61439947	0.0308353	AUGUGCC	ENSMUST00000022496.7|Kpna3|ENSMUSG00000021929.8|karyopherin (importin) alpha 3
mm10_v2_chr11_-_117969176_117969192	0.0306365	AUGUGCC	ENSMUST00000054002.3|Socs3|ENSMUSG00000053113.3|suppressor of cytokine signaling 3
mm10_v2_chr11_+_69991061_69991143	0.0291123	AUGUGCC	ENSMUST00000018711.8|Gabarap|ENSMUSG00000018567.8|gamma-aminobutyric acid receptor associated protein
mm10_v2_chr18_+_6765171_6765220	0.0284985	AUGUGCC	ENSMUST00000097680.5|Rab18|ENSMUSG00000073639.5|RAB18, member RAS oncogene family
mm10_v2_chr14_-_121379206_121379334	0.0284515	AUGUGCC	ENSMUST00000079817.7|Stk24|ENSMUSG00000063410.7|serine/threonine kinase 24
mm10_v2_chr5_+_129941949_129942113	0.0262224	AUGUGCC	ENSMUST00000051758.7|Vkorc1l1|ENSMUSG00000066735.5|vitamin K epoxide reductase complex, subunit 1-like 1 	ENSMUST00000073945.4|Vkorc1l1|ENSMUSG00000066735.5|vitamin K epoxide reductase complex, subunit 1-like 1
mm10_v2_chr11_-_96777492_96777559	0.0260664	AUGUGCC	ENSMUST00000127375.1|Snx11|ENSMUSG00000020876.8|sorting nexin 11 	ENSMUST00000021246.2|Snx11|ENSMUSG00000020876.8|sorting nexin 11 	ENSMUST00000107661.3|Snx11|ENSMUSG00000020876.8|sorting nexin 11
mm10_v2_chr1_+_43445736_43445830	0.0257674	AUGUGCC	ENSMUST00000086421.5|Nck2|ENSMUSG00000066877.5|non-catalytic region of tyrosine kinase adaptor protein 2 	ENSMUST00000114744.1|Nck2|ENSMUSG00000066877.5|non-catalytic region of tyrosine kinase adaptor protein 2
mm10_v2_chr15_-_26895049_26895049	0.0231669	AUGUGCC	ENSMUST00000059204.9|Fbxl7|ENSMUSG00000043556.9|F-box and leucine-rich repeat protein 7
mm10_v2_chr2_+_145785980_145786152	0.0227731	AUGUGCC	ENSMUST00000110005.1|Rin2|ENSMUSG00000001768.9|Ras and Rab interactor 2 	ENSMUST00000094480.4|Rin2|ENSMUSG00000001768.9|Ras and Rab interactor 2
mm10_v2_chr2_+_54436317_54436422	0.0223605	AUGUGCC	ENSMUST00000112636.1|Galnt13|ENSMUSG00000060988.6|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 	ENSMUST00000112635.1|Galnt13|ENSMUSG00000060988.6|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 	ENSMUST00000112634.1|Galnt13|ENSMUSG00000060988.6|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13
mm10_v2_chr10_-_45470201_45470260	0.0221413	AUGUGCC	ENSMUST00000079390.6|Lin28b|ENSMUSG00000063804.7|lin-28 homolog B (C. elegans)
mm10_v2_chr19_+_53140430_53140449	0.0217978	AUGUGCC	ENSMUST00000111741.2|Add3|ENSMUSG00000025026.8|adducin 3 (gamma)
mm10_v2_chr15_+_40655020_40655054	0.0216221	AUGUGCC	ENSMUST00000053467.4|Zfpm2|ENSMUSG00000022306.8|zinc finger protein, multitype 2
mm10_v2_chr5_+_81021583_81021593	0.0205807	AUGUGCC	ENSMUST00000121707.1|Lphn3|ENSMUSG00000037605.10|latrophilin 3
mm10_v2_chr11_+_53457273_53457300	0.0196097	AUGUGCC	ENSMUST00000093114.4|Shroom1|ENSMUSG00000018387.6|shroom family member 1
mm10_v2_chrX_+_13071500_13071576	0.0190589	AUGUGCC	ENSMUST00000089302.4|Usp9x|ENSMUSG00000031010.11|ubiquitin specific peptidase 9, X chromosome
mm10_v2_chr11_-_86807624_86807746	0.0186371	AUGUGCC	ENSMUST00000018569.7|Dhx40|ENSMUSG00000018425.12|DEAH (Asp-Glu-Ala-His) box polypeptide 40
mm10_v2_chr17_-_24527925_24527938	0.0186257	AUGUGCC	ENSMUST00000176652.1|Traf7|ENSMUSG00000052752.9|TNF receptor-associated factor 7
mm10_v2_chrX_+_13280970_13281031	0.0185593	AUGUGCC	ENSMUST00000000804.6|Ddx3x|ENSMUSG00000000787.6|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked
mm10_v2_chr17_-_64331817_64331957	0.0170238	AUGUGCC	ENSMUST00000172733.1|Pja2|ENSMUSG00000024083.9|praja 2, RING-H2 motif containing 	ENSMUST00000172818.1|Pja2|ENSMUSG00000024083.9|praja 2, RING-H2 motif containing
mm10_v2_chr17_-_12992188_12992226	0.0164252	AUGUGCC	ENSMUST00000159986.1|Wtap|ENSMUSG00000060475.6|Wilms' tumour 1-associating protein
mm10_v2_chr10_-_121476248_121476275	0.0156424	AUGUGCC	ENSMUST00000026902.7|Rassf3|ENSMUSG00000025795.7|Ras association (RalGDS/AF-6) domain family member 3
mm10_v2_chr12_-_80260356_80260371	0.0150623	AUGUGCC	ENSMUST00000021554.8|Actn1|ENSMUSG00000015143.8|actinin, alpha 1
mm10_v2_chr11_-_71019233_71019303	0.014554	AUGUGCC	ENSMUST00000108523.3|Derl2|ENSMUSG00000018442.7|Der1-like domain family, member 2 	ENSMUST00000143850.1|Derl2|ENSMUSG00000018442.7|Der1-like domain family, member 2
mm10_v2_chr11_-_102819114_102819214	0.0139327	AUGUGCC	ENSMUST00000068933.5|Gjc1|ENSMUSG00000034520.8|gap junction protein, gamma 1
mm10_v2_chr7_-_65371210_65371287	0.0139019	AUGUGCC	ENSMUST00000102592.3|Tjp1|ENSMUSG00000030516.8|tight junction protein 1
mm10_v2_chr9_-_115310421_115310447	0.0138575	AUGUGCC	ENSMUST00000035010.8|Stt3b|ENSMUSG00000032437.9|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)
mm10_v2_chr19_+_10525244_10525305	0.0129849	AUGUGCC	ENSMUST00000038379.3|Cpsf7|ENSMUSG00000034820.3|cleavage and polyadenylation specific factor 7
mm10_v2_chr4_+_15881255_15881272	0.0129011	AUGUGCC	ENSMUST00000029876.1|Calb1|ENSMUSG00000028222.2|calbindin 1
mm10_v2_chr19_+_21272276_21272296	0.0127343	AUGUGCC	ENSMUST00000025659.4|Zfand5|ENSMUSG00000024750.4|zinc finger, AN1-type domain 5
mm10_v2_chr13_-_100833369_100833445	0.0126231	AUGUGCC	ENSMUST00000067246.4|Slc30a5|ENSMUSG00000021629.9|solute carrier family 30 (zinc transporter), member 5
mm10_v2_chr5_-_75978447_75978463	0.0121929	AUGUGCC	ENSMUST00000113516.1|Kdr|ENSMUSG00000062960.7|kinase insert domain protein receptor
mm10_v2_chr8_-_78436640_78436649	0.0120326	AUGUGCC	ENSMUST00000034115.3|Pou4f2|ENSMUSG00000031688.3|POU domain, class 4, transcription factor 2
mm10_v2_chr2_-_130840091_130840150	0.0109652	AUGUGCC	ENSMUST00000044766.8|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene 	ENSMUST00000138990.1|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene 	ENSMUST00000120316.1|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene 	ENSMUST00000110243.1|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene
mm10_v2_chr6_+_134920401_134920434	0.0108893	AUGUGCC	ENSMUST00000067327.4|Cdkn1b|ENSMUSG00000003031.8|cyclin-dependent kinase inhibitor 1B 	ENSMUST00000003115.6|Cdkn1b|ENSMUSG00000003031.8|cyclin-dependent kinase inhibitor 1B
mm10_v2_chr2_-_69586021_69586065	0.0103969	AUGUGCC	ENSMUST00000100051.2|Lrp2|ENSMUSG00000027070.8|low density lipoprotein receptor-related protein 2 	ENSMUST00000092551.4|Lrp2|ENSMUSG00000027070.8|low density lipoprotein receptor-related protein 2 	ENSMUST00000080953.5|Lrp2|ENSMUSG00000027070.8|low density lipoprotein receptor-related protein 2
mm10_v2_chr14_+_12284198_12284239	0.0101231	AUGUGCC	ENSMUST00000112669.3|3830406C13Rik|ENSMUSG00000033111.9|RIKEN cDNA 3830406C13 gene 	ENSMUST00000163392.1|3830406C13Rik|ENSMUSG00000033111.9|RIKEN cDNA 3830406C13 gene
mm10_v2_chr7_+_112023469_112023566	0.0101086	AUGUGCC	ENSMUST00000106653.2|Usp47|ENSMUSG00000059263.7|ubiquitin specific peptidase 47
mm10_v2_chr5_+_122850186_122850198	0.00965642	AUGUGCC	ENSMUST00000031434.6|Rnf34|ENSMUSG00000029474.6|ring finger protein 34
mm10_v2_chr4_+_21848039_21848077	0.0092459	AUGUGCC	ENSMUST00000098238.2|Sfrs18|ENSMUSG00000028248.9|serine/arginine-rich splicing factor 18 	ENSMUST00000108229.1|Sfrs18|ENSMUSG00000028248.9|serine/arginine-rich splicing factor 18
mm10_v2_chr4_+_141147911_141147971	0.00877341	AUGUGCC	ENSMUST00000030757.9|Fbxo42|ENSMUSG00000028920.9|F-box protein 42
mm10_v2_chr2_-_63184253_63184292	0.00832042	AUGUGCC	ENSMUST00000075052.3|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7 	ENSMUST00000112454.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr14_+_111675113_111675119	0.00796232	AUGUGCC	ENSMUST00000042767.7|Slitrk5|ENSMUSG00000033214.9|SLIT and NTRK-like family, member 5
mm10_v2_chr15_+_79670856_79670888	0.00793508	AUGUGCC	ENSMUST00000023062.3|Tomm22|ENSMUSG00000022427.3|translocase of outer mitochondrial membrane 22 homolog (yeast)
mm10_v2_chr1_+_176814660_176814660	0.00777856	AUGUGCC	ENSMUST00000056773.8|Sdccag8|ENSMUSG00000026504.11|serologically defined colon cancer antigen 8 	ENSMUST00000027785.8|Sdccag8|ENSMUSG00000026504.11|serologically defined colon cancer antigen 8
mm10_v2_chr4_-_33248500_33248518	0.00774571	AUGUGCC	ENSMUST00000049357.9|Pnrc1|ENSMUSG00000040128.9|proline-rich nuclear receptor coactivator 1
mm10_v2_chr7_+_51621830_51621891	0.00699281	AUGUGCC	ENSMUST00000032710.5|Slc17a6|ENSMUSG00000030500.5|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6
mm10_v2_chr15_+_4375462_4375511	0.0069537	AUGUGCC	ENSMUST00000061925.4|Plcxd3|ENSMUSG00000049148.8|phosphatidylinositol-specific phospholipase C, X domain containing 3
mm10_v2_chr11_+_52098681_52098796	0.00648502	AUGUGCC	ENSMUST00000020608.2|Ppp2ca|ENSMUSG00000020349.4|protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
mm10_v2_chr9_-_103364970_103364996	0.0057082	AUGUGCC	ENSMUST00000116517.2|Cdv3|ENSMUSG00000032803.8|carnitine deficiency-associated gene expressed in ventricle 3
mm10_v2_chr13_+_80883403_80883422	0.0056163	AUGUGCC	ENSMUST00000099356.2|Arrdc3|ENSMUSG00000074794.3|arrestin domain containing 3
mm10_v2_chr2_-_57114970_57115038	0.00432776	AUGUGCC	ENSMUST00000028166.2|Nr4a2|ENSMUSG00000026826.7|nuclear receptor subfamily 4, group A, member 2
mm10_v2_chr13_-_17805093_17805189	0.00409194	AUGUGCC	ENSMUST00000042365.7|Cdk13|ENSMUSG00000041297.7|cyclin-dependent kinase 13
mm10_v2_chr7_-_34654342_34654398	0.00385219	AUGUGCC	ENSMUST00000108069.1|Kctd15|ENSMUSG00000030499.3|potassium channel tetramerisation domain containing 15
mm10_v2_chr3_+_103279293_103279293	0.00335303	AUGUGCC	ENSMUST00000029444.6|Trim33|ENSMUSG00000033014.6|tripartite motif-containing 33 	ENSMUST00000106860.1|Trim33|ENSMUSG00000033014.6|tripartite motif-containing 33
mm10_v2_chr13_+_94976344_94976422	0.00302443	AUGUGCC	ENSMUST00000160115.1|Wdr41|ENSMUSG00000042015.10|WD repeat domain 41 	ENSMUST00000160801.1|Wdr41|ENSMUSG00000042015.10|WD repeat domain 41 	ENSMUST00000056512.7|Wdr41|ENSMUSG00000042015.10|WD repeat domain 41 	ENSMUST00000046437.6|Wdr41|ENSMUSG00000042015.10|WD repeat domain 41
mm10_v2_chr13_-_51567084_51567084	0.00288152	AUGUGCC	ENSMUST00000021898.5|Shc3|ENSMUSG00000021448.6|src homology 2 domain-containing transforming protein C3
mm10_v2_chr5_+_67260565_67260692	0.00286183	AUGUGCC	ENSMUST00000037918.5|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33 	ENSMUST00000162543.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33
mm10_v2_chr5_+_135187251_135187269	0.00247592	AUGUGCC	ENSMUST00000002825.5|Baz1b|ENSMUSG00000002748.6|bromodomain adjacent to zinc finger domain, 1B
mm10_v2_chr2_-_60125651_60125775	0.00174394	AUGUGCC	ENSMUST00000112550.1|Baz2b|ENSMUSG00000026987.10|bromodomain adjacent to zinc finger domain, 2B
mm10_v2_chr5_+_65537209_65537233	0.00162397	AUGUGCC	ENSMUST00000142407.1|Ube2k|ENSMUSG00000029203.10|ubiquitin-conjugating enzyme E2K
mm10_v2_chrX_+_18162575_18162657	0.00159965	AUGUGCC	ENSMUST00000044484.6|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A 	ENSMUST00000052368.8|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A
mm10_v2_chr17_+_56673225_56673287	0.00147975	AUGUGCC	ENSMUST00000002445.8|Ranbp3|ENSMUSG00000002372.8|RAN binding protein 3
mm10_v2_chr11_+_79993062_79993122	0.00109459	AUGUGCC	ENSMUST00000017692.8|Suz12|ENSMUSG00000017548.9|suppressor of zeste 12 homolog (Drosophila) 	ENSMUST00000163272.1|Suz12|ENSMUSG00000017548.9|suppressor of zeste 12 homolog (Drosophila)
