mm10_v2_chr8_-_89044162_89044195	0.171611	CCAGCAU	ENSMUST00000034090.6|Sall1|ENSMUSG00000031665.6|sal-like 1 (Drosophila)
mm10_v2_chr13_+_89540636_89540678	0.170859	CCAGCAU	ENSMUST00000022108.7|Hapln1|ENSMUSG00000021613.8|hyaluronan and proteoglycan link protein 1
mm10_v2_chr8_+_76899772_76899828	0.0990958	CCAGCAU	ENSMUST00000109913.2|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2
mm10_v2_chr11_+_96929260_96929324	0.0935412	CCAGCAU	ENSMUST00000054311.5|Prr15l|ENSMUSG00000047040.9|proline rich 15-like 	ENSMUST00000107636.3|Prr15l|ENSMUSG00000047040.9|proline rich 15-like
mm10_v2_chr12_-_78983476_78983493	0.0897254	CCAGCAU	ENSMUST00000070174.7|Tmem229b|ENSMUSG00000046157.7|transmembrane protein 229B
mm10_v2_chr12_-_24096968_24096968	0.076732	CCAGCAU	ENSMUST00000101538.3|9030624G23Rik|ENSMUSG00000073158.3|RIKEN cDNA 9030624G23 gene
mm10_v2_chr11_+_5520652_5520659	0.0753669	CCAGCAU	ENSMUST00000063084.9|Xbp1|ENSMUSG00000020484.12|X-box binding protein 1
mm10_v2_chr16_-_38800193_38800209	0.0750191	CCAGCAU	ENSMUST00000057767.4|Upk1b|ENSMUSG00000049436.4|uroplakin 1B
mm10_v2_chr19_-_47464406_47464450	0.0713506	CCAGCAU	ENSMUST00000111800.2|Sh3pxd2a|ENSMUSG00000053617.5|SH3 and PX domains 2A 	ENSMUST00000081619.2|Sh3pxd2a|ENSMUSG00000053617.5|SH3 and PX domains 2A
mm10_v2_chr13_+_104287855_104287882	0.0707964	CCAGCAU	ENSMUST00000065766.6|Adamts6|ENSMUSG00000046169.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6
mm10_v2_chr1_+_177444653_177444669	0.0642804	CCAGCAU	ENSMUST00000094276.3|Zbtb18|ENSMUSG00000063659.6|zinc finger and BTB domain containing 18
mm10_v2_chr19_-_34747289_34747313	0.0631337	CCAGCAU	ENSMUST00000009522.3|Slc16a12|ENSMUSG00000009378.3|solute carrier family 16 (monocarboxylic acid transporters), member 12
mm10_v2_chr7_+_19094594_19094633	0.0605676	CCAGCAU	ENSMUST00000049454.5|Six5|ENSMUSG00000040841.5|sine oculis-related homeobox 5
mm10_v2_chr8_-_113848615_113848774	0.0575961	CCAGCAU	ENSMUST00000093113.4|Adamts18|ENSMUSG00000053399.8|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18
mm10_v2_chrX_-_7574120_7574312	0.0558463	CCAGCAU	ENSMUST00000045924.7|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F 	ENSMUST00000115742.2|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F 	ENSMUST00000150787.1|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F
mm10_v2_chr15_+_66577536_66577637	0.054733	CCAGCAU	ENSMUST00000048188.8|Phf20l1|ENSMUSG00000072501.4|PHD finger protein 20-like 1
mm10_v2_chr3_-_89387132_89387189	0.0538243	CCAGCAU	ENSMUST00000107433.1|Zbtb7b|ENSMUSG00000028042.9|zinc finger and BTB domain containing 7B
mm10_v2_chr7_-_99858872_99858906	0.0534149	CCAGCAU	ENSMUST00000036274.6|Spcs2|ENSMUSG00000035227.6|signal peptidase complex subunit 2 homolog (S. cerevisiae)
mm10_v2_chr10_-_62231208_62231232	0.0532582	CCAGCAU	ENSMUST00000047883.9|Tspan15|ENSMUSG00000037031.9|tetraspanin 15
mm10_v2_chr7_-_119895697_119895752	0.0518819	CCAGCAU	ENSMUST00000059851.6|Dcun1d3|ENSMUSG00000048787.6|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm10_v2_chr2_-_162661075_162661147	0.0475014	CCAGCAU	ENSMUST00000109442.1|Ptprt|ENSMUSG00000053141.10|protein tyrosine phosphatase, receptor type, T 	ENSMUST00000109445.2|Ptprt|ENSMUSG00000053141.10|protein tyrosine phosphatase, receptor type, T 	ENSMUST00000109443.1|Ptprt|ENSMUSG00000053141.10|protein tyrosine phosphatase, receptor type, T 	ENSMUST00000109441.1|Ptprt|ENSMUSG00000053141.10|protein tyrosine phosphatase, receptor type, T
mm10_v2_chr3_-_116007399_116007411	0.0470509	CCAGCAU	ENSMUST00000067485.3|Slc30a7|ENSMUSG00000054414.3|solute carrier family 30 (zinc transporter), member 7
mm10_v2_chr18_-_16809233_16809324	0.0452954	CCAGCAU	ENSMUST00000025166.7|Cdh2|ENSMUSG00000024304.8|cadherin 2
mm10_v2_chr5_-_30960236_30960320	0.0449215	CCAGCAU	ENSMUST00000088063.2|Preb|ENSMUSG00000045302.7|prolactin regulatory element binding
mm10_v2_chr3_+_41555723_41555745	0.0433175	CCAGCAU	ENSMUST00000026865.8|Phf17|ENSMUSG00000025764.8|PHD finger protein 17
mm10_v2_chr4_-_140665891_140666012	0.0429674	CCAGCAU	ENSMUST00000069623.5|Arhgef10l|ENSMUSG00000040964.10|Rho guanine nucleotide exchange factor (GEF) 10-like
mm10_v2_chr6_+_66896397_66896479	0.0418493	CCAGCAU	ENSMUST00000043148.6|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114228.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114227.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114226.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114225.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114224.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12
mm10_v2_chr8_-_41133697_41133755	0.0394505	CCAGCAU	ENSMUST00000155055.1|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1 	ENSMUST00000059115.6|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1 	ENSMUST00000145860.1|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr11_+_94936224_94936260	0.0383839	CCAGCAU	ENSMUST00000001547.7|Col1a1|ENSMUSG00000001506.10|collagen, type I, alpha 1
mm10_v2_chrX_-_141725181_141725263	0.0381761	CCAGCAU	ENSMUST00000067841.7|Irs4|ENSMUSG00000054667.7|insulin receptor substrate 4
mm10_v2_chr6_-_112947246_112947277	0.0361323	CCAGCAU	ENSMUST00000088373.4|Srgap3|ENSMUSG00000030257.10|SLIT-ROBO Rho GTPase activating protein 3
mm10_v2_chr7_+_134670667_134670715	0.0336411	CCAGCAU	ENSMUST00000084488.4|Dock1|ENSMUSG00000058325.5|dedicator of cytokinesis 1
mm10_v2_chr6_-_120038647_120038699	0.0288666	CCAGCAU	ENSMUST00000088646.5|Wnk1|ENSMUSG00000045962.10|WNK lysine deficient protein kinase 1 	ENSMUST00000177761.1|Wnk1|ENSMUSG00000045962.10|WNK lysine deficient protein kinase 1 	ENSMUST00000088644.6|Wnk1|ENSMUSG00000045962.10|WNK lysine deficient protein kinase 1 	ENSMUST00000060043.6|Wnk1|ENSMUSG00000045962.10|WNK lysine deficient protein kinase 1
mm10_v2_chr7_-_90457167_90457229	0.0278147	CCAGCAU	ENSMUST00000032844.5|Tmem126a|ENSMUSG00000030615.5|transmembrane protein 126A
mm10_v2_chr11_+_69088490_69088553	0.0277701	CCAGCAU	ENSMUST00000021273.6|Vamp2|ENSMUSG00000020894.10|vesicle-associated membrane protein 2 	ENSMUST00000117780.1|Vamp2|ENSMUSG00000020894.10|vesicle-associated membrane protein 2
mm10_v2_chr10_+_127739516_127739592	0.027367	CCAGCAU	ENSMUST00000054287.7|Zbtb39|ENSMUSG00000044617.7|zinc finger and BTB domain containing 39
mm10_v2_chr3_+_152395991_152396059	0.0247622	CCAGCAU	ENSMUST00000106100.2|Zzz3|ENSMUSG00000039068.10|zinc finger, ZZ domain containing 3
mm10_v2_chr13_+_45507438_45507515	0.0247253	CCAGCAU	ENSMUST00000000260.6|Gmpr|ENSMUSG00000000253.6|guanosine monophosphate reductase
mm10_v2_chr11_-_96824008_96824159	0.0229132	CCAGCAU	ENSMUST00000142065.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000167110.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000169828.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000126949.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1
mm10_v2_chr10_+_53337686_53337724	0.0224526	CCAGCAU	ENSMUST00000046221.6|Pln|ENSMUSG00000038583.6|phospholamban 	ENSMUST00000163319.1|Pln|ENSMUSG00000038583.6|phospholamban
mm10_v2_chr2_+_59612034_59612109	0.0216655	CCAGCAU	ENSMUST00000112568.1|Tanc1|ENSMUSG00000035168.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 	ENSMUST00000037526.4|Tanc1|ENSMUSG00000035168.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
mm10_v2_chr2_-_52676571_52676588	0.0206229	CCAGCAU	ENSMUST00000178799.1|Cacnb4|ENSMUSG00000017412.9|calcium channel, voltage-dependent, beta 4 subunit
mm10_v2_chrX_+_42149288_42149412	0.0203974	CCAGCAU	ENSMUST00000115073.2|Stag2|ENSMUSG00000025862.8|stromal antigen 2 	ENSMUST00000115072.1|Stag2|ENSMUSG00000025862.8|stromal antigen 2
mm10_v2_chr8_+_84701430_84701497	0.0200893	CCAGCAU	ENSMUST00000037165.4|Lyl1|ENSMUSG00000034041.4|lymphoblastomic leukemia 1
mm10_v2_chr14_-_78536762_78536851	0.0195298	CCAGCAU	ENSMUST00000123853.1|Akap11|ENSMUSG00000022016.9|A kinase (PRKA) anchor protein 11
mm10_v2_chr11_-_96075655_96075677	0.017528	CCAGCAU	ENSMUST00000090541.5|Atp5g1|ENSMUSG00000006057.9|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)
mm10_v2_chr7_+_122067164_122067216	0.0173137	CCAGCAU	ENSMUST00000033158.4|Ubfd1|ENSMUSG00000030870.6|ubiquitin family domain containing 1
mm10_v2_chr5_-_121009510_121009521	0.0167509	CCAGCAU	ENSMUST00000079204.5|Rph3a|ENSMUSG00000029608.7|rabphilin 3A
mm10_v2_chrX_+_101532734_101532777	0.0165195	CCAGCAU	ENSMUST00000118878.1|Taf1|ENSMUSG00000031314.11|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000101341.2|Taf1|ENSMUSG00000031314.11|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000149274.1|Taf1|ENSMUSG00000031314.11|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr11_-_44470464_44470513	0.0159667	CCAGCAU	ENSMUST00000102795.3|Ublcp1|ENSMUSG00000041231.9|ubiquitin-like domain containing CTD phosphatase 1
mm10_v2_chr18_+_32163073_32163115	0.0151263	CCAGCAU	ENSMUST00000096575.3|Map3k2|ENSMUSG00000024383.8|mitogen-activated protein kinase kinase kinase 2
mm10_v2_chr5_-_137786651_137786668	0.0131389	CCAGCAU	ENSMUST00000031740.9|Mepce|ENSMUSG00000029726.10|methylphosphate capping enzyme
mm10_v2_chrX_+_136927320_136927329	0.0127243	CCAGCAU	ENSMUST00000059808.3|H2bfm|ENSMUSG00000048155.3|H2B histone family, member M
mm10_v2_chr4_-_133633419_133633525	0.0120242	CCAGCAU	ENSMUST00000084238.4|Zdhhc18|ENSMUSG00000037553.8|zinc finger, DHHC domain containing 18
mm10_v2_chr15_+_34082664_34082734	0.0112661	CCAGCAU	ENSMUST00000022865.9|Mtdh|ENSMUSG00000022255.9|metadherin
mm10_v2_chr4_-_43025756_43025788	0.0103462	CCAGCAU	ENSMUST00000098109.2|Pigo|ENSMUSG00000028454.10|phosphatidylinositol glycan anchor biosynthesis, class O
mm10_v2_chr17_+_30005029_30005098	0.0100516	CCAGCAU	ENSMUST00000057897.7|Zfand3|ENSMUSG00000044477.10|zinc finger, AN1-type domain 3
mm10_v2_chr16_+_4726357_4726370	0.0091238	CCAGCAU	ENSMUST00000154117.1|Hmox2|ENSMUSG00000004070.9|heme oxygenase (decycling) 2 	ENSMUST00000004172.8|Hmox2|ENSMUSG00000004070.9|heme oxygenase (decycling) 2
mm10_v2_chr6_+_72414301_72414319	0.00897775	CCAGCAU	ENSMUST00000065906.7|Ggcx|ENSMUSG00000053460.7|gamma-glutamyl carboxylase
mm10_v2_chr18_-_23041641_23041671	0.00806483	CCAGCAU	ENSMUST00000097651.3|Nol4|ENSMUSG00000041923.9|nucleolar protein 4
mm10_v2_chr10_-_31609184_31609184	0.007824	CCAGCAU	ENSMUST00000081989.6|Rnf217|ENSMUSG00000063760.8|ring finger protein 217
mm10_v2_chrX_+_96096034_96096056	0.00737683	CCAGCAU	ENSMUST00000117399.1|Msn|ENSMUSG00000031207.10|moesin
mm10_v2_chr2_-_52424826_52424916	0.00681842	CCAGCAU	ENSMUST00000036541.7|Arl5a|ENSMUSG00000036093.7|ADP-ribosylation factor-like 5A
mm10_v2_chr13_-_105054895_105054930	0.00663959	CCAGCAU	ENSMUST00000063551.5|Rgs7bp|ENSMUSG00000021719.8|regulator of G-protein signalling 7 binding protein
mm10_v2_chr13_+_54371340_54371352	0.00636422	CCAGCAU	ENSMUST00000026985.8|Cplx2|ENSMUSG00000025867.8|complexin 2
mm10_v2_chr15_+_80711292_80711340	0.0060287	CCAGCAU	ENSMUST00000067689.7|Tnrc6b|ENSMUSG00000047888.9|trinucleotide repeat containing 6b
mm10_v2_chr10_-_112928974_112929026	0.00588094	CCAGCAU	ENSMUST00000099276.2|Atxn7l3b|ENSMUSG00000074748.2|ataxin 7-like 3B
mm10_v2_chr11_+_116198853_116198903	0.00574173	CCAGCAU	ENSMUST00000021130.6|Ten1|ENSMUSG00000020778.6|TEN1 telomerase capping complex subunit
mm10_v2_chr5_+_33018816_33018865	0.00520874	CCAGCAU	ENSMUST00000019109.7|Ywhah|ENSMUSG00000018965.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide
mm10_v2_chr6_-_39725448_39725478	0.0044165	CCAGCAU	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr3_+_103279293_103279293	0.00430895	CCAGCAU	ENSMUST00000029444.6|Trim33|ENSMUSG00000033014.6|tripartite motif-containing 33 	ENSMUST00000106860.1|Trim33|ENSMUSG00000033014.6|tripartite motif-containing 33
mm10_v2_chr7_-_34389540_34389638	0.00428014	CCAGCAU	ENSMUST00000085585.5|Lsm14a|ENSMUSG00000066568.6|LSM14 homolog A (SCD6, S. cerevisiae)
mm10_v2_chr12_+_3807017_3807063	0.00337067	CCAGCAU	ENSMUST00000020991.8|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A 	ENSMUST00000172509.1|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A
mm10_v2_chr4_-_82859571_82859679	0.00326955	CCAGCAU	ENSMUST00000156055.1|Zdhhc21|ENSMUSG00000028403.9|zinc finger, DHHC domain containing 21 	ENSMUST00000030110.8|Zdhhc21|ENSMUSG00000028403.9|zinc finger, DHHC domain containing 21
mm10_v2_chr2_-_119029392_119029395	0.00306946	CCAGCAU	ENSMUST00000036470.7|Ccdc32|ENSMUSG00000039983.7|coiled-coil domain containing 32 	ENSMUST00000110834.1|Ccdc32|ENSMUSG00000039983.7|coiled-coil domain containing 32
mm10_v2_chr17_-_70990751_70990819	0.00292583	CCAGCAU	ENSMUST00000038446.8|Myl12b|ENSMUSG00000034868.8|myosin, light chain 12B, regulatory
mm10_v2_chr3_-_158562199_158562290	0.00222781	CCAGCAU	ENSMUST00000106044.1|Lrrc7|ENSMUSG00000028176.7|leucine rich repeat containing 7
mm10_v2_chr19_+_16132812_16132910	0.00175208	CCAGCAU	ENSMUST00000025541.5|Gnaq|ENSMUSG00000024639.5|guanine nucleotide binding protein, alpha q polypeptide
mm10_v2_chr2_-_35200923_35201120	0.00167887	CCAGCAU	ENSMUST00000028238.8|Rab14|ENSMUSG00000026878.10|RAB14, member RAS oncogene family 	ENSMUST00000113025.1|Rab14|ENSMUSG00000026878.10|RAB14, member RAS oncogene family
mm10_v2_chr4_+_97777606_97777632	0.00128831	CCAGCAU	ENSMUST00000075448.6|Nfia|ENSMUSG00000028565.12|nuclear factor I/A 	ENSMUST00000092532.6|Nfia|ENSMUSG00000028565.12|nuclear factor I/A
mm10_v2_chr11_-_118355496_118355506	0.00105452	CCAGCAU	ENSMUST00000017610.3|Timp2|ENSMUSG00000017466.3|tissue inhibitor of metalloproteinase 2
mm10_v2_chr11_-_88718223_88718294	0.000726896	CCAGCAU	ENSMUST00000107909.1|Msi2|ENSMUSG00000069769.7|musashi RNA-binding protein 2
mm10_v2_chr5_-_21055880_21055961	0.000347634	CCAGCAU	ENSMUST00000030556.7|Ptpn12|ENSMUSG00000028771.7|protein tyrosine phosphatase, non-receptor type 12
mm10_v2_chr2_+_151542483_151542646	0.000138772	CCAGCAU	ENSMUST00000044011.5|Fkbp1a|ENSMUSG00000032966.8|FK506 binding protein 1a
mm10_v2_chr19_-_58860975_58860997	6.68754e-05	CCAGCAU	ENSMUST00000066285.4|Hspa12a|ENSMUSG00000025092.6|heat shock protein 12A
