mm10_v2_chr3_-_26133734_26133734	0.0429582	GAGAACU	ENSMUST00000108308.3|Nlgn1|ENSMUSG00000063887.7|neuroligin 1 	ENSMUST00000075054.4|Nlgn1|ENSMUSG00000063887.7|neuroligin 1
mm10_v2_chr4_+_17853451_17853474	0.0412272	GAGAACU	ENSMUST00000029881.3|Mmp16|ENSMUSG00000028226.9|matrix metallopeptidase 16
mm10_v2_chr3_+_94413244_94413318	0.0281403	GAGAACU	ENSMUST00000166032.1|Tdrkh|ENSMUSG00000041912.6|tudor and KH domain containing protein 	ENSMUST00000045245.5|Tdrkh|ENSMUSG00000041912.6|tudor and KH domain containing protein
mm10_v2_chr5_+_105415738_105415849	0.0233696	GAGAACU	ENSMUST00000112707.1|Lrrc8b|ENSMUSG00000070639.4|leucine rich repeat containing 8 family, member B
mm10_v2_chr10_+_107271827_107271850	0.0219287	GAGAACU	ENSMUST00000020057.8|Lin7a|ENSMUSG00000019906.8|lin-7 homolog A (C. elegans) 	ENSMUST00000105280.3|Lin7a|ENSMUSG00000019906.8|lin-7 homolog A (C. elegans)
mm10_v2_chr5_-_96161990_96162097	0.0215486	GAGAACU	ENSMUST00000155901.1|Cnot6l|ENSMUSG00000034724.11|CCR4-NOT transcription complex, subunit 6-like
mm10_v2_chr7_+_113765998_113766039	0.0210981	GAGAACU	ENSMUST00000046687.9|Spon1|ENSMUSG00000038156.9|spondin 1, (f-spondin) extracellular matrix protein
mm10_v2_chr1_+_40515362_40515431	0.0192385	GAGAACU	ENSMUST00000027237.5|Il18rap|ENSMUSG00000026068.5|interleukin 18 receptor accessory protein
mm10_v2_chr2_+_163547148_163547188	0.0187637	GAGAACU	ENSMUST00000109411.1|Hnf4a|ENSMUSG00000017950.10|hepatic nuclear factor 4, alpha 	ENSMUST00000018094.6|Hnf4a|ENSMUSG00000017950.10|hepatic nuclear factor 4, alpha
mm10_v2_chr14_+_69029289_69029414	0.0183975	GAGAACU	ENSMUST00000014957.8|Stc1|ENSMUSG00000014813.8|stanniocalcin 1
mm10_v2_chr9_-_43116514_43116572	0.0181095	GAGAACU	ENSMUST00000061833.4|Tmem136|ENSMUSG00000048503.6|transmembrane protein 136
mm10_v2_chr7_-_38227975_38228000	0.0171319	GAGAACU	ENSMUST00000098513.4|Plekhf1|ENSMUSG00000074170.4|pleckstrin homology domain containing, family F (with FYVE domain) member 1
mm10_v2_chr11_-_5381734_5381745	0.0165776	GAGAACU	ENSMUST00000172492.1|Znrf3|ENSMUSG00000041961.8|zinc and ring finger 3
mm10_v2_chr1_+_156558844_156559049	0.0161731	GAGAACU	ENSMUST00000166172.2|Abl2|ENSMUSG00000026596.7|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) 	ENSMUST00000027888.6|Abl2|ENSMUSG00000026596.7|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)
mm10_v2_chr1_+_180568913_180568960	0.0140751	GAGAACU	ENSMUST00000027777.6|Parp1|ENSMUSG00000026496.6|poly (ADP-ribose) polymerase family, member 1
mm10_v2_chr2_+_26916360_26916396	0.012251	GAGAACU	ENSMUST00000015017.7|Surf2|ENSMUSG00000014873.9|surfeit gene 2
mm10_v2_chr2_-_181592733_181592803	0.0119356	GAGAACU	ENSMUST00000108789.2|Znf512b|ENSMUSG00000000823.10|zinc finger protein 512B 	ENSMUST00000153998.1|Znf512b|ENSMUSG00000000823.10|zinc finger protein 512B
mm10_v2_chr6_+_147091379_147091528	0.011924	GAGAACU	ENSMUST00000036003.7|Klhl42|ENSMUSG00000040102.9|kelch-like 42
mm10_v2_chr11_+_86683985_86684089	0.0118669	GAGAACU	ENSMUST00000108022.1|Ptrh2|ENSMUSG00000072582.3|peptidyl-tRNA hydrolase 2 	ENSMUST00000108021.1|Ptrh2|ENSMUSG00000072582.3|peptidyl-tRNA hydrolase 2
mm10_v2_chr2_+_33216051_33216084	0.0115235	GAGAACU	ENSMUST00000004208.5|Angptl2|ENSMUSG00000004105.6|angiopoietin-like 2
mm10_v2_chr7_-_101903783_101903786	0.0113686	GAGAACU	ENSMUST00000106969.1|Tomt|ENSMUSG00000078630.1|transmembrane O-methyltransferase
mm10_v2_chr7_+_89632689_89632731	0.0106832	GAGAACU	ENSMUST00000032856.6|Me3|ENSMUSG00000030621.11|malic enzyme 3, NADP(+)-dependent, mitochondrial
mm10_v2_chr10_+_80755196_80755239	0.0105985	GAGAACU	ENSMUST00000105336.2|Dot1l|ENSMUSG00000061589.8|DOT1-like, histone H3 methyltransferase (S. cerevisiae)
mm10_v2_chr19_+_18713192_18713212	0.0102462	GAGAACU	ENSMUST00000062753.2|D030056L22Rik|ENSMUSG00000047044.7|RIKEN cDNA D030056L22 gene
mm10_v2_chr11_-_45944910_45944960	0.00993759	GAGAACU	ENSMUST00000129820.1|Lsm11|ENSMUSG00000044847.7|U7 snRNP-specific Sm-like protein LSM11
mm10_v2_chr15_-_53902472_53902530	0.00991729	GAGAACU	ENSMUST00000078673.6|Samd12|ENSMUSG00000058656.6|sterile alpha motif domain containing 12
mm10_v2_chr11_-_49712674_49712726	0.00921889	GAGAACU	ENSMUST00000020624.6|Cnot6|ENSMUSG00000020362.7|CCR4-NOT transcription complex, subunit 6 	ENSMUST00000145353.1|Cnot6|ENSMUSG00000020362.7|CCR4-NOT transcription complex, subunit 6
mm10_v2_chr5_+_123076275_123076354	0.008946	GAGAACU	ENSMUST00000067505.8|Tmem120b|ENSMUSG00000054434.8|transmembrane protein 120B 	ENSMUST00000111619.3|Tmem120b|ENSMUSG00000054434.8|transmembrane protein 120B 	ENSMUST00000160344.1|Tmem120b|ENSMUSG00000054434.8|transmembrane protein 120B
mm10_v2_chr3_-_103791537_103791563	0.00868395	GAGAACU	ENSMUST00000118317.1|Hipk1|ENSMUSG00000008730.11|homeodomain interacting protein kinase 1
mm10_v2_chr2_-_30474199_30474222	0.00858781	GAGAACU	ENSMUST00000065134.2|Ier5l|ENSMUSG00000089762.2|immediate early response 5-like
mm10_v2_chr3_-_61365951_61365951	0.00850648	GAGAACU	ENSMUST00000066298.2|B430305J03Rik|ENSMUSG00000053706.2|RIKEN cDNA B430305J03 gene
mm10_v2_chr5_-_99978914_99978966	0.00821919	GAGAACU	ENSMUST00000112939.3|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000171786.1|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000072750.6|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000019128.8|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000172361.1|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D
mm10_v2_chr5_-_144358103_144358123	0.00818376	GAGAACU	ENSMUST00000055190.7|Baiap2l1|ENSMUSG00000038859.7|BAI1-associated protein 2-like 1
mm10_v2_chr9_+_40269430_40269441	0.00762466	GAGAACU	ENSMUST00000171835.2|Scn3b|ENSMUSG00000049281.9|sodium channel, voltage-gated, type III, beta
mm10_v2_chr19_-_34527396_34527481	0.00736405	GAGAACU	ENSMUST00000049572.8|Lipa|ENSMUSG00000024781.9|lysosomal acid lipase A 	ENSMUST00000178114.1|Lipa|ENSMUSG00000024781.9|lysosomal acid lipase A
mm10_v2_chr9_-_66593106_66593142	0.00733519	GAGAACU	ENSMUST00000127569.1|Usp3|ENSMUSG00000032376.6|ubiquitin specific peptidase 3
mm10_v2_chr1_-_97661950_97662074	0.00676034	GAGAACU	ENSMUST00000053033.7|D1Ertd622e|ENSMUSG00000044768.10|DNA segment, Chr 1, ERATO Doi 622, expressed 	ENSMUST00000149927.1|D1Ertd622e|ENSMUSG00000044768.10|DNA segment, Chr 1, ERATO Doi 622, expressed
mm10_v2_chr11_+_72607221_72607307	0.00616844	GAGAACU	ENSMUST00000021148.6|Ube2g1|ENSMUSG00000020794.7|ubiquitin-conjugating enzyme E2G 1 	ENSMUST00000138247.1|Ube2g1|ENSMUSG00000020794.7|ubiquitin-conjugating enzyme E2G 1
mm10_v2_chr2_+_37516618_37516634	0.00597933	GAGAACU	ENSMUST00000065441.6|Gpr21|ENSMUSG00000053164.6|G protein-coupled receptor 21
mm10_v2_chr4_+_127021311_127021339	0.00596389	GAGAACU	ENSMUST00000030623.7|Sfpq|ENSMUSG00000028820.7|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm10_v2_chr2_+_15055274_15055379	0.00595417	GAGAACU	ENSMUST00000069870.3|Arl5b|ENSMUSG00000017418.7|ADP-ribosylation factor-like 5B
mm10_v2_chr14_-_26971232_26971232	0.0058431	GAGAACU	ENSMUST00000036570.4|Appl1|ENSMUSG00000040760.4|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm10_v2_chr2_+_163994960_163994960	0.00572462	GAGAACU	ENSMUST00000018470.3|Ywhab|ENSMUSG00000018326.3|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm10_v2_chr9_+_75071148_75071228	0.00540299	GAGAACU	ENSMUST00000123128.1|Myo5a|ENSMUSG00000034593.10|myosin VA
mm10_v2_chr16_+_19760232_19760247	0.00527387	GAGAACU	ENSMUST00000079780.3|B3gnt5|ENSMUSG00000022686.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 	ENSMUST00000164397.1|B3gnt5|ENSMUSG00000022686.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
mm10_v2_chr1_-_134079114_134079120	0.00491793	GAGAACU	ENSMUST00000020692.6|Btg2|ENSMUSG00000020423.6|B cell translocation gene 2, anti-proliferative
mm10_v2_chr18_+_11839220_11839475	0.00459161	GAGAACU	ENSMUST00000171109.1|Cables1|ENSMUSG00000040957.8|CDK5 and Abl enzyme substrate 1 	ENSMUST00000046948.8|Cables1|ENSMUSG00000040957.8|CDK5 and Abl enzyme substrate 1
mm10_v2_chr16_-_56886131_56886176	0.00442321	GAGAACU	ENSMUST00000023435.5|Tmem45a|ENSMUSG00000022754.5|transmembrane protein 45a
mm10_v2_chr15_+_55112317_55112346	0.00404648	GAGAACU	ENSMUST00000096433.3|Deptor|ENSMUSG00000022419.9|DEP domain containing MTOR-interacting protein
mm10_v2_chr1_-_170976112_170976127	0.00310849	GAGAACU	ENSMUST00000027966.7|Fcgr2b|ENSMUSG00000026656.9|Fc receptor, IgG, low affinity IIb 	ENSMUST00000081103.5|Fcgr2b|ENSMUSG00000026656.9|Fc receptor, IgG, low affinity IIb 	ENSMUST00000159688.1|Fcgr2b|ENSMUSG00000026656.9|Fc receptor, IgG, low affinity IIb
mm10_v2_chr2_-_34826071_34826087	0.00302675	GAGAACU	ENSMUST00000113077.1|Fbxw2|ENSMUSG00000035949.9|F-box and WD-40 domain protein 2 	ENSMUST00000028220.3|Fbxw2|ENSMUSG00000035949.9|F-box and WD-40 domain protein 2
mm10_v2_chr12_+_85110833_85110866	0.0026014	GAGAACU	ENSMUST00000053811.8|Dlst|ENSMUSG00000004789.9|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)
mm10_v2_chr9_+_96196246_96196280	0.00257011	GAGAACU	ENSMUST00000165120.2|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2 	ENSMUST00000034982.9|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2
mm10_v2_chr19_+_10389068_10389090	0.0024454	GAGAACU	ENSMUST00000169121.1|Syt7|ENSMUSG00000024743.8|synaptotagmin VII 	ENSMUST00000076968.3|Syt7|ENSMUSG00000024743.8|synaptotagmin VII 	ENSMUST00000073899.4|Syt7|ENSMUSG00000024743.8|synaptotagmin VII
mm10_v2_chr2_+_101678403_101678469	0.00237948	GAGAACU	ENSMUST00000004949.7|Traf6|ENSMUSG00000027164.8|TNF receptor-associated factor 6
mm10_v2_chr16_+_45224315_45224346	0.00169187	GAGAACU	ENSMUST00000102802.3|Btla|ENSMUSG00000052013.8|B and T lymphocyte associated 	ENSMUST00000063654.4|Btla|ENSMUSG00000052013.8|B and T lymphocyte associated
mm10_v2_chr13_-_111490111_111490139	0.00117811	GAGAACU	ENSMUST00000047627.7|Gpbp1|ENSMUSG00000032745.11|GC-rich promoter binding protein 1
mm10_v2_chr1_-_15892657_15892729	0.000945674	GAGAACU	ENSMUST00000040695.4|Sbspon|ENSMUSG00000032719.4|somatomedin B and thrombospondin, type 1 domain containing
mm10_v2_chr11_-_76763550_76763582	0.000725355	GAGAACU	ENSMUST00000010536.8|Gosr1|ENSMUSG00000010392.8|golgi SNAP receptor complex member 1
mm10_v2_chr18_-_73703739_73703806	0.000690294	GAGAACU	ENSMUST00000025393.7|Smad4|ENSMUSG00000024515.7|SMAD family member 4
mm10_v2_chr12_+_86241848_86241936	0.000621842	GAGAACU	ENSMUST00000071106.4|Gpatch2l|ENSMUSG00000021254.8|G patch domain containing 2 like
mm10_v2_chr12_-_46818749_46818788	0.000584116	GAGAACU	ENSMUST00000021438.6|Nova1|ENSMUSG00000021047.6|neuro-oncological ventral antigen 1
mm10_v2_chrX_+_98149666_98149721	0.000160709	GAGAACU	ENSMUST00000052837.7|Ar|ENSMUSG00000046532.7|androgen receptor
