mm10_v2_chr10_+_103367748_103367836	1.00923	GAGGUAG	ENSMUST00000074204.4|Slc6a15|ENSMUSG00000019894.7|solute carrier family 6 (neurotransmitter transporter), member 15 	ENSMUST00000179636.1|Slc6a15|ENSMUSG00000019894.7|solute carrier family 6 (neurotransmitter transporter), member 15
mm10_v2_chr9_+_65141154_65141198	0.991834	GAGGUAG	ENSMUST00000034961.4|Igdcc3|ENSMUSG00000032394.5|immunoglobulin superfamily, DCC subclass, member 3
mm10_v2_chr7_+_46396439_46396539	0.967981	GAGGUAG	ENSMUST00000025202.6|Kcnc1|ENSMUSG00000058975.6|potassium voltage gated channel, Shaw-related subfamily, member 1
mm10_v2_chr15_-_53902472_53902530	0.950258	GAGGUAG	ENSMUST00000078673.6|Samd12|ENSMUSG00000058656.6|sterile alpha motif domain containing 12
mm10_v2_chr9_+_111311674_111311758	0.93544	GAGGUAG	ENSMUST00000078626.3|Trank1|ENSMUSG00000062296.4|tetratricopeptide repeat and ankyrin repeat containing 1
mm10_v2_chr15_-_98807910_98807932	0.822099	GAGGUAG	ENSMUST00000075444.6|Ddn|ENSMUSG00000059213.6|dendrin
mm10_v2_chr6_-_145048809_145048821	0.789282	GAGGUAG	ENSMUST00000032402.5|Bcat1|ENSMUSG00000030268.11|branched chain aminotransferase 1, cytosolic
mm10_v2_chr9_+_72806874_72806874	0.763229	GAGGUAG	ENSMUST00000055535.8|Prtg|ENSMUSG00000036030.9|protogenin homolog (Gallus gallus)
mm10_v2_chr11_-_96005872_96005952	0.693336	GAGGUAG	ENSMUST00000013559.2|Igf2bp1|ENSMUSG00000013415.3|insulin-like growth factor 2 mRNA binding protein 1
mm10_v2_chr14_+_45351473_45351473	0.665779	GAGGUAG	ENSMUST00000111835.2|Styx|ENSMUSG00000053205.8|serine/threonine/tyrosine interaction protein
mm10_v2_chr5_+_33995984_33996030	0.650739	GAGGUAG	ENSMUST00000056355.8|Nat8l|ENSMUSG00000048142.8|N-acetyltransferase 8-like
mm10_v2_chr12_-_36156781_36156825	0.610759	GAGGUAG	ENSMUST00000020856.4|Bzw2|ENSMUSG00000020547.4|basic leucine zipper and W2 domains 2
mm10_v2_chr16_+_5146985_5147109	0.597613	GAGGUAG	ENSMUST00000165810.1|Sec14l5|ENSMUSG00000091712.1|SEC14-like 5 (S. cerevisiae)
mm10_v2_chr7_+_131966446_131966469	0.596815	GAGGUAG	ENSMUST00000045840.4|Gpr26|ENSMUSG00000040125.4|G protein-coupled receptor 26
mm10_v2_chr16_+_7069825_7069846	0.594086	GAGGUAG	ENSMUST00000056416.7|Rbfox1|ENSMUSG00000008658.9|RNA binding protein, fox-1 homolog (C. elegans) 1
mm10_v2_chr11_+_79591120_79591224	0.588977	GAGGUAG	ENSMUST00000017783.6|Rab11fip4|ENSMUSG00000017639.7|RAB11 family interacting protein 4 (class II)
mm10_v2_chr4_-_134018829_134018841	0.581899	GAGGUAG	ENSMUST00000051674.2|Lin28a|ENSMUSG00000050966.3|lin-28 homolog A (C. elegans)
mm10_v2_chr16_-_63864114_63864182	0.579226	GAGGUAG	ENSMUST00000064405.6|Epha3|ENSMUSG00000052504.6|Eph receptor A3
mm10_v2_chr8_+_124793061_124793092	0.568746	GAGGUAG	ENSMUST00000041106.7|Trim67|ENSMUSG00000036913.8|tripartite motif-containing 67
mm10_v2_chr17_+_42315947_42315947	0.555519	GAGGUAG	ENSMUST00000048691.4|Ptchd4|ENSMUSG00000042256.4|patched domain containing 4
mm10_v2_chr18_+_10325148_10325222	0.534217	GAGGUAG	ENSMUST00000048977.8|Greb1l|ENSMUSG00000042942.9|growth regulation by estrogen in breast cancer-like
mm10_v2_chr6_+_21985903_21985972	0.533986	GAGGUAG	ENSMUST00000137437.1|Cped1|ENSMUSG00000062980.9|cadherin-like and PC-esterase domain containing 1 	ENSMUST00000115383.2|Cped1|ENSMUSG00000062980.9|cadherin-like and PC-esterase domain containing 1
mm10_v2_chr2_+_55437100_55437182	0.531429	GAGGUAG	ENSMUST00000112633.2|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3 	ENSMUST00000112632.1|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3
mm10_v2_chr3_+_94377432_94377451	0.528879	GAGGUAG	ENSMUST00000107292.1|Rorc|ENSMUSG00000028150.8|RAR-related orphan receptor gamma
mm10_v2_chr7_+_100227311_100227394	0.495684	GAGGUAG	ENSMUST00000084935.3|Pgm2l1|ENSMUSG00000030729.10|phosphoglucomutase 2-like 1
mm10_v2_chr8_+_46617426_46617449	0.49347	GAGGUAG	ENSMUST00000093517.5|Casp3|ENSMUSG00000031628.8|caspase 3
mm10_v2_chr7_+_16130285_16130333	0.485017	GAGGUAG	ENSMUST00000168693.1|Slc8a2|ENSMUSG00000030376.7|solute carrier family 8 (sodium/calcium exchanger), member 2
mm10_v2_chr4_-_132732514_132732558	0.47657	GAGGUAG	ENSMUST00000045550.4|Xkr8|ENSMUSG00000037752.4|X Kell blood group precursor related family member 8 homolog
mm10_v2_chr9_+_65101453_65101535	0.467146	GAGGUAG	ENSMUST00000077696.6|Igdcc4|ENSMUSG00000032816.8|immunoglobulin superfamily, DCC subclass, member 4 	ENSMUST00000035499.4|Igdcc4|ENSMUSG00000032816.8|immunoglobulin superfamily, DCC subclass, member 4 	ENSMUST00000166273.1|Igdcc4|ENSMUSG00000032816.8|immunoglobulin superfamily, DCC subclass, member 4
mm10_v2_chr9_-_114564315_114564369	0.46515	GAGGUAG	ENSMUST00000111816.2|Trim71|ENSMUSG00000079259.2|tripartite motif-containing 71
mm10_v2_chr6_+_120666388_120666424	0.462229	GAGGUAG	ENSMUST00000112686.1|Cecr2|ENSMUSG00000071226.5|cat eye syndrome chromosome region, candidate 2
mm10_v2_chr4_+_122995944_122995958	0.453237	GAGGUAG	ENSMUST00000106252.2|Mycl|ENSMUSG00000028654.7|v-myc myelocytomatosis viral oncogene homolog, lung carcinoma derived (avian)
mm10_v2_chr18_-_77565050_77565162	0.452997	GAGGUAG	ENSMUST00000182153.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000182146.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000026494.7|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000182024.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165
mm10_v2_chr8_+_117157972_117158137	0.414457	GAGGUAG	ENSMUST00000064488.4|Gan|ENSMUSG00000052557.5|giant axonal neuropathy 	ENSMUST00000162997.1|Gan|ENSMUSG00000052557.5|giant axonal neuropathy
mm10_v2_chr15_-_94404258_94404327	0.403261	GAGGUAG	ENSMUST00000035342.4|Adamts20|ENSMUSG00000022449.8|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20 	ENSMUST00000155907.1|Adamts20|ENSMUSG00000022449.8|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20
mm10_v2_chr4_+_136172367_136172395	0.396504	GAGGUAG	ENSMUST00000061721.5|E2f2|ENSMUSG00000018983.9|E2F transcription factor 2
mm10_v2_chr7_-_63212514_63212531	0.394445	GAGGUAG	ENSMUST00000032738.5|Chrna7|ENSMUSG00000030525.7|cholinergic receptor, nicotinic, alpha polypeptide 7
mm10_v2_chr16_-_21947536_21947577	0.390369	GAGGUAG	ENSMUST00000023562.7|Tmem41a|ENSMUSG00000022856.8|transmembrane protein 41a
mm10_v2_chr14_-_118923070_118923167	0.365889	GAGGUAG	ENSMUST00000047208.5|Dzip1|ENSMUSG00000042156.9|DAZ interacting protein 1
mm10_v2_chr4_-_105109829_105109913	0.360139	GAGGUAG	ENSMUST00000030243.7|Prkaa2|ENSMUSG00000028518.8|protein kinase, AMP-activated, alpha 2 catalytic subunit
mm10_v2_chr6_-_49214954_49215022	0.355371	GAGGUAG	ENSMUST00000031838.7|Igf2bp3|ENSMUSG00000029814.8|insulin-like growth factor 2 mRNA binding protein 3
mm10_v2_chr17_+_27556613_27556635	0.355308	GAGGUAG	ENSMUST00000117600.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1 	ENSMUST00000114888.3|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1
mm10_v2_chr5_+_105415738_105415849	0.350343	GAGGUAG	ENSMUST00000112707.1|Lrrc8b|ENSMUSG00000070639.4|leucine rich repeat containing 8 family, member B
mm10_v2_chr2_-_105399286_105399319	0.345566	GAGGUAG	ENSMUST00000006128.6|Rcn1|ENSMUSG00000005973.6|reticulocalbin 1
mm10_v2_chrX_-_111697069_111697127	0.342766	GAGGUAG	ENSMUST00000113422.2|Hdx|ENSMUSG00000034551.6|highly divergent homeobox 	ENSMUST00000038472.5|Hdx|ENSMUSG00000034551.6|highly divergent homeobox
mm10_v2_chr19_+_44989073_44989101	0.340493	GAGGUAG	ENSMUST00000026225.8|Sema4g|ENSMUSG00000025207.9|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
mm10_v2_chr10_-_45470201_45470260	0.339312	GAGGUAG	ENSMUST00000079390.6|Lin28b|ENSMUSG00000063804.7|lin-28 homolog B (C. elegans)
mm10_v2_chr15_+_11064764_11064797	0.339274	GAGGUAG	ENSMUST00000061318.7|Adamts12|ENSMUSG00000047497.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12
mm10_v2_chr7_+_27258725_27258815	0.338659	GAGGUAG	ENSMUST00000079258.6|Numbl|ENSMUSG00000063160.6|numb-like
mm10_v2_chr9_-_48835932_48835962	0.335849	GAGGUAG	ENSMUST00000093852.3|Zbtb16|ENSMUSG00000066687.4|zinc finger and BTB domain containing 16
mm10_v2_chr4_-_49845549_49845549	0.335511	GAGGUAG	ENSMUST00000093859.4|Grin3a|ENSMUSG00000039579.9|glutamate receptor ionotropic, NMDA3A 	ENSMUST00000076674.3|Grin3a|ENSMUSG00000039579.9|glutamate receptor ionotropic, NMDA3A
mm10_v2_chr9_+_30942541_30942562	0.335409	GAGGUAG	ENSMUST00000068135.6|Adamts8|ENSMUSG00000031994.7|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 8
mm10_v2_chr10_-_61383523_61383523	0.329992	GAGGUAG	ENSMUST00000020289.8|Pald1|ENSMUSG00000020092.8|phosphatase domain containing, paladin 1
mm10_v2_chr9_+_108692116_108692193	0.327866	GAGGUAG	ENSMUST00000035220.6|Prkar2a|ENSMUSG00000032601.8|protein kinase, cAMP dependent regulatory, type II alpha
mm10_v2_chr15_+_102296256_102296330	0.32603	GAGGUAG	ENSMUST00000064924.4|Espl1|ENSMUSG00000058290.3|extra spindle poles-like 1 (S. cerevisiae)
mm10_v2_chr6_-_50382831_50382847	0.325374	GAGGUAG	ENSMUST00000114468.2|Osbpl3|ENSMUSG00000029822.9|oxysterol binding protein-like 3
mm10_v2_chr11_+_3330401_3330541	0.322253	GAGGUAG	ENSMUST00000045153.4|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1
mm10_v2_chr10_-_53379816_53379858	0.321676	GAGGUAG	ENSMUST00000095691.5|Cep85l|ENSMUSG00000038594.8|centrosomal protein 85-like
mm10_v2_chr3_+_88532314_88532396	0.315173	GAGGUAG	ENSMUST00000172699.1|Mex3a|ENSMUSG00000074480.4|mex3 homolog A (C. elegans)
mm10_v2_chrX_+_151198078_151198140	0.314151	GAGGUAG	ENSMUST00000184730.1|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3 	ENSMUST00000184392.1|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3 	ENSMUST00000096285.4|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3
mm10_v2_chr2_-_117342709_117342822	0.313342	GAGGUAG	ENSMUST00000173541.1|Rasgrp1|ENSMUSG00000027347.12|RAS guanyl releasing protein 1 	ENSMUST00000172901.1|Rasgrp1|ENSMUSG00000027347.12|RAS guanyl releasing protein 1 	ENSMUST00000173252.1|Rasgrp1|ENSMUSG00000027347.12|RAS guanyl releasing protein 1
mm10_v2_chr6_+_71707561_71707561	0.30221	GAGGUAG	ENSMUST00000121469.1|Reep1|ENSMUSG00000052852.7|receptor accessory protein 1
mm10_v2_chr16_-_32003122_32003287	0.300875	GAGGUAG	ENSMUST00000023457.5|Senp5|ENSMUSG00000022772.5|SUMO/sentrin specific peptidase 5
mm10_v2_chr7_+_120842824_120842836	0.298914	GAGGUAG	ENSMUST00000047875.8|Eef2k|ENSMUSG00000035064.10|eukaryotic elongation factor-2 kinase
mm10_v2_chr2_+_153031852_153032014	0.29662	GAGGUAG	ENSMUST00000037235.6|Xkr7|ENSMUSG00000042631.7|X Kell blood group precursor related family member 7 homolog
mm10_v2_chr12_-_31634592_31634677	0.295514	GAGGUAG	ENSMUST00000020979.7|Bcap29|ENSMUSG00000020650.8|B cell receptor associated protein 29 	ENSMUST00000177962.1|Bcap29|ENSMUSG00000020650.8|B cell receptor associated protein 29
mm10_v2_chr19_+_18670780_18670810	0.292869	GAGGUAG	ENSMUST00000025632.9|2410127L17Rik|ENSMUSG00000024726.9|RIKEN cDNA 2410127L17 gene
mm10_v2_chr2_+_68117713_68117713	0.283781	GAGGUAG	ENSMUST00000112346.2|B3galt1|ENSMUSG00000034780.5|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
mm10_v2_chr1_+_153652943_153653025	0.282914	GAGGUAG	ENSMUST00000041776.5|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr1_-_84935089_84935125	0.273461	GAGGUAG	ENSMUST00000027422.5|Slc16a14|ENSMUSG00000026220.5|solute carrier family 16 (monocarboxylic acid transporters), member 14
mm10_v2_chr5_-_96161990_96162097	0.271315	GAGGUAG	ENSMUST00000155901.1|Cnot6l|ENSMUSG00000034724.11|CCR4-NOT transcription complex, subunit 6-like
mm10_v2_chr1_-_77515048_77515102	0.269204	GAGGUAG	ENSMUST00000027451.6|Epha4|ENSMUSG00000026235.8|Eph receptor A4
mm10_v2_chr16_-_46010212_46010223	0.264048	GAGGUAG	ENSMUST00000130481.1|Plcxd2|ENSMUSG00000087141.1|phosphatidylinositol-specific phospholipase C, X domain containing 2
mm10_v2_chr4_+_63215402_63215435	0.261516	GAGGUAG	ENSMUST00000036300.6|Col27a1|ENSMUSG00000045672.9|collagen, type XXVII, alpha 1
mm10_v2_chr2_+_119897212_119897305	0.260665	GAGGUAG	ENSMUST00000046717.6|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000110774.1|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000110773.2|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000079934.5|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000156510.1|Mga|ENSMUSG00000033943.9|MAX gene associated
mm10_v2_chr4_-_41503046_41503122	0.260295	GAGGUAG	ENSMUST00000054920.4|AI464131|ENSMUSG00000046312.4|expressed sequence AI464131
mm10_v2_chr9_-_107231816_107231909	0.257243	GAGGUAG	ENSMUST00000044532.4|Dock3|ENSMUSG00000039716.6|dedicator of cyto-kinesis 3
mm10_v2_chr17_-_26095487_26095514	0.257126	GAGGUAG	ENSMUST00000025007.5|Nme4|ENSMUSG00000024177.8|NME/NM23 nucleoside diphosphate kinase 4
mm10_v2_chr15_+_8109313_8109356	0.255397	GAGGUAG	ENSMUST00000163765.1|Nup155|ENSMUSG00000022142.7|nucleoporin 155
mm10_v2_chr12_-_109068173_109068247	0.253312	GAGGUAG	ENSMUST00000073156.7|Begain|ENSMUSG00000040867.9|brain-enriched guanylate kinase-associated
mm10_v2_chr2_+_119034783_119034869	0.251837	GAGGUAG	ENSMUST00000028796.1|Rpusd2|ENSMUSG00000027324.1|RNA pseudouridylate synthase domain containing 2
mm10_v2_chr9_-_14782964_14782964	0.249928	GAGGUAG	ENSMUST00000034406.3|Ankrd49|ENSMUSG00000031931.3|ankyrin repeat domain 49
mm10_v2_chr1_-_171196229_171196268	0.249041	GAGGUAG	ENSMUST00000111332.1|Pcp4l1|ENSMUSG00000038370.6|Purkinje cell protein 4-like 1
mm10_v2_chr9_+_32116040_32116136	0.247879	GAGGUAG	ENSMUST00000174641.1|Arhgap32|ENSMUSG00000041444.8|Rho GTPase activating protein 32
mm10_v2_chr15_-_56694525_56694554	0.247593	GAGGUAG	ENSMUST00000050544.7|Has2|ENSMUSG00000022367.7|hyaluronan synthase 2
mm10_v2_chr5_+_104202609_104202624	0.244527	GAGGUAG	ENSMUST00000066708.5|Dmp1|ENSMUSG00000029307.6|dentin matrix protein 1
mm10_v2_chrX_+_93654863_93654981	0.24401	GAGGUAG	ENSMUST00000113933.2|Pcyt1b|ENSMUSG00000035246.10|phosphate cytidylyltransferase 1, choline, beta isoform
mm10_v2_chr4_+_53631460_53631505	0.243778	GAGGUAG	ENSMUST00000179534.1|Fsd1l|ENSMUSG00000054752.10|fibronectin type III and SPRY domain containing 1-like 	ENSMUST00000132151.1|Fsd1l|ENSMUSG00000054752.10|fibronectin type III and SPRY domain containing 1-like
mm10_v2_chr16_+_65815508_65815633	0.242408	GAGGUAG	ENSMUST00000168064.1|Vgll3|ENSMUSG00000091243.1|vestigial like 3 (Drosophila)
mm10_v2_chr18_+_14783238_14783259	0.239268	GAGGUAG	ENSMUST00000169862.1|Taf4b|ENSMUSG00000054321.6|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr15_+_78428564_78428636	0.238835	GAGGUAG	ENSMUST00000166142.2|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17 	ENSMUST00000162517.1|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17 	ENSMUST00000089414.4|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17
mm10_v2_chr13_+_24327415_24327461	0.23109	GAGGUAG	ENSMUST00000167746.1|Cmah|ENSMUSG00000016756.10|cytidine monophospho-N-acetylneuraminic acid hydroxylase
mm10_v2_chr13_+_49682100_49682169	0.227857	GAGGUAG	ENSMUST00000165316.1|Iars|ENSMUSG00000037851.7|isoleucine-tRNA synthetase 	ENSMUST00000047363.7|Iars|ENSMUSG00000037851.7|isoleucine-tRNA synthetase
mm10_v2_chr11_-_86257518_86257550	0.227229	GAGGUAG	ENSMUST00000136469.1|Ints2|ENSMUSG00000018068.7|integrator complex subunit 2 	ENSMUST00000018212.6|Ints2|ENSMUSG00000018068.7|integrator complex subunit 2
mm10_v2_chr11_+_52764634_52764693	0.226857	GAGGUAG	ENSMUST00000036796.7|Fstl4|ENSMUSG00000036264.9|follistatin-like 4
mm10_v2_chr10_+_51677756_51677789	0.225622	GAGGUAG	ENSMUST00000122922.1|Rfx6|ENSMUSG00000019900.11|regulatory factor X, 6
mm10_v2_chr9_+_26733728_26733824	0.224718	GAGGUAG	ENSMUST00000160899.1|B3gat1|ENSMUSG00000045994.10|beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) 	ENSMUST00000161431.1|B3gat1|ENSMUSG00000045994.10|beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) 	ENSMUST00000159799.1|B3gat1|ENSMUSG00000045994.10|beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)
mm10_v2_chr9_-_83806241_83806260	0.224567	GAGGUAG	ENSMUST00000034796.7|Elovl4|ENSMUSG00000032262.7|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4
mm10_v2_chr1_+_156558844_156559049	0.222749	GAGGUAG	ENSMUST00000166172.2|Abl2|ENSMUSG00000026596.7|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) 	ENSMUST00000027888.6|Abl2|ENSMUSG00000026596.7|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)
mm10_v2_chr11_-_45944910_45944960	0.222537	GAGGUAG	ENSMUST00000129820.1|Lsm11|ENSMUSG00000044847.7|U7 snRNP-specific Sm-like protein LSM11
mm10_v2_chr5_+_91517615_91517694	0.216973	GAGGUAG	ENSMUST00000040576.9|Parm1|ENSMUSG00000034981.9|prostate androgen-regulated mucin-like protein 1
mm10_v2_chr16_+_37916440_37916496	0.215745	GAGGUAG	ENSMUST00000061274.7|Gpr156|ENSMUSG00000046961.7|G protein-coupled receptor 156
mm10_v2_chr17_+_32036098_32036113	0.213077	GAGGUAG	ENSMUST00000081339.6|Rrp1b|ENSMUSG00000058392.6|ribosomal RNA processing 1 homolog B (S. cerevisiae)
mm10_v2_chr10_-_120476469_120476527	0.211323	GAGGUAG	ENSMUST00000072777.7|Hmga2|ENSMUSG00000056758.8|high mobility group AT-hook 2 	ENSMUST00000159699.1|Hmga2|ENSMUSG00000056758.8|high mobility group AT-hook 2
mm10_v2_chr12_+_118846329_118846329	0.210389	GAGGUAG	ENSMUST00000063918.2|Sp8|ENSMUSG00000048562.6|trans-acting transcription factor 8
mm10_v2_chr4_+_21931291_21931366	0.210176	GAGGUAG	ENSMUST00000029908.7|Faxc|ENSMUSG00000028246.7|failed axon connections homolog (Drosophila)
mm10_v2_chr3_+_116594959_116595031	0.207227	GAGGUAG	ENSMUST00000029571.8|Sass6|ENSMUSG00000027959.9|spindle assembly 6 homolog (C. elegans)
mm10_v2_chr12_-_109600328_109600348	0.203985	GAGGUAG	ENSMUST00000149046.2|Rtl1|ENSMUSG00000085925.2|retrotransposon-like 1
mm10_v2_chr7_-_43489967_43490075	0.203353	GAGGUAG	ENSMUST00000107974.1|Iglon5|ENSMUSG00000013367.4|IgLON family member 5
mm10_v2_chr16_+_16896469_16896598	0.203025	GAGGUAG	ENSMUST00000027373.9|Ppm1f|ENSMUSG00000026181.11|protein phosphatase 1F (PP2C domain containing)
mm10_v2_chr14_-_31830402_31830440	0.201305	GAGGUAG	ENSMUST00000014640.7|Ankrd28|ENSMUSG00000014496.7|ankyrin repeat domain 28
mm10_v2_chr8_-_81014866_81014942	0.200177	GAGGUAG	ENSMUST00000042724.6|Usp38|ENSMUSG00000038250.8|ubiquitin specific peptidase 38
mm10_v2_chr5_-_103629279_103629403	0.198195	GAGGUAG	ENSMUST00000031263.1|Slc10a6|ENSMUSG00000029321.1|solute carrier family 10 (sodium/bile acid cotransporter family), member 6
mm10_v2_chr19_+_21778325_21778363	0.197412	GAGGUAG	ENSMUST00000096194.2|Tmem2|ENSMUSG00000024754.6|transmembrane protein 2 	ENSMUST00000025663.6|Tmem2|ENSMUSG00000024754.6|transmembrane protein 2
mm10_v2_chr2_-_181592733_181592803	0.197224	GAGGUAG	ENSMUST00000108789.2|Znf512b|ENSMUSG00000000823.10|zinc finger protein 512B 	ENSMUST00000153998.1|Znf512b|ENSMUSG00000000823.10|zinc finger protein 512B
mm10_v2_chr6_-_134792596_134792682	0.196647	GAGGUAG	ENSMUST00000100857.3|Dusp16|ENSMUSG00000030203.11|dual specificity phosphatase 16
mm10_v2_chr15_-_64312636_64312692	0.195977	GAGGUAG	ENSMUST00000177083.1|Asap1|ENSMUSG00000022377.10|ArfGAP with SH3 domain, ankyrin repeat and PH domain1 	ENSMUST00000177371.1|Asap1|ENSMUSG00000022377.10|ArfGAP with SH3 domain, ankyrin repeat and PH domain1
mm10_v2_chr7_+_89404356_89404367	0.194411	GAGGUAG	ENSMUST00000058755.3|Fzd4|ENSMUSG00000049791.3|frizzled homolog 4 (Drosophila)
mm10_v2_chr14_-_70159433_70159502	0.192244	GAGGUAG	ENSMUST00000058240.7|9930012K11Rik|ENSMUSG00000044551.7|RIKEN cDNA 9930012K11 gene 	ENSMUST00000153871.1|9930012K11Rik|ENSMUSG00000044551.7|RIKEN cDNA 9930012K11 gene
mm10_v2_chr1_+_132007606_132007634	0.191028	GAGGUAG	ENSMUST00000086556.5|Elk4|ENSMUSG00000026436.9|ELK4, member of ETS oncogene family
mm10_v2_chr12_-_76822510_76822558	0.190038	GAGGUAG	ENSMUST00000021459.7|Rab15|ENSMUSG00000021062.9|RAB15, member RAS oncogene family
mm10_v2_chr1_+_153740344_153740360	0.189435	GAGGUAG	ENSMUST00000027748.7|Rgs16|ENSMUSG00000026475.7|regulator of G-protein signaling 16
mm10_v2_chr10_-_49788743_49788769	0.188931	GAGGUAG	ENSMUST00000105483.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2) 	ENSMUST00000105487.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2)
mm10_v2_chr19_-_12501996_12502152	0.188905	GAGGUAG	ENSMUST00000045521.7|Dtx4|ENSMUSG00000039982.7|deltex 4 homolog (Drosophila)
mm10_v2_chr1_+_131744011_131744029	0.187451	GAGGUAG	ENSMUST00000049027.3|Slc26a9|ENSMUSG00000042268.4|solute carrier family 26, member 9
mm10_v2_chr6_+_14901344_14901364	0.187158	GAGGUAG	ENSMUST00000115477.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr11_-_103749815_103749829	0.186471	GAGGUAG	ENSMUST00000018630.2|Wnt9b|ENSMUSG00000018486.2|wingless-type MMTV integration site 9B
mm10_v2_chr15_+_9140527_9140621	0.181355	GAGGUAG	ENSMUST00000090380.4|Lmbrd2|ENSMUSG00000039704.6|LMBR1 domain containing 2
mm10_v2_chr7_+_126272589_126272619	0.181013	GAGGUAG	ENSMUST00000056028.9|Sbk1|ENSMUSG00000042978.9|SH3-binding kinase 1
mm10_v2_chr5_+_3343893_3343945	0.180913	GAGGUAG	ENSMUST00000165117.1|Cdk6|ENSMUSG00000040274.5|cyclin-dependent kinase 6
mm10_v2_chr15_+_80234071_80234146	0.180763	GAGGUAG	ENSMUST00000023048.4|Mief1|ENSMUSG00000022412.6|mitochondrial elongation factor 1 	ENSMUST00000166030.1|Mief1|ENSMUSG00000022412.6|mitochondrial elongation factor 1
mm10_v2_chr3_-_10440054_10440127	0.179068	GAGGUAG	ENSMUST00000099223.4|Snx16|ENSMUSG00000027534.10|sorting nexin 16 	ENSMUST00000029047.6|Snx16|ENSMUSG00000027534.10|sorting nexin 16
mm10_v2_chr5_-_32854185_32854256	0.178109	GAGGUAG	ENSMUST00000130134.2|Prr14l|ENSMUSG00000054280.8|proline rich 14-like 	ENSMUST00000120129.2|Prr14l|ENSMUSG00000054280.8|proline rich 14-like
mm10_v2_chr15_+_55307743_55307762	0.176265	GAGGUAG	ENSMUST00000023053.5|Col14a1|ENSMUSG00000022371.9|collagen, type XIV, alpha 1 	ENSMUST00000110221.2|Col14a1|ENSMUSG00000022371.9|collagen, type XIV, alpha 1 	ENSMUST00000110217.3|Col14a1|ENSMUSG00000022371.9|collagen, type XIV, alpha 1
mm10_v2_chr2_+_156613664_156613706	0.175162	GAGGUAG	ENSMUST00000169464.2|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila) 	ENSMUST00000109567.3|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila)
mm10_v2_chr14_-_67072465_67072476	0.174108	GAGGUAG	ENSMUST00000089230.5|Ppp2r2a|ENSMUSG00000022052.8|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform
mm10_v2_chr5_-_121836852_121836880	0.173199	GAGGUAG	ENSMUST00000086310.1|Sh2b3|ENSMUSG00000042594.10|SH2B adaptor protein 3
mm10_v2_chr14_-_26669835_26669883	0.172363	GAGGUAG	ENSMUST00000052932.9|Pde12|ENSMUSG00000043702.9|phosphodiesterase 12
mm10_v2_chr15_-_73184840_73184971	0.170747	GAGGUAG	ENSMUST00000044113.10|Ago2|ENSMUSG00000036698.10|argonaute RISC catalytic subunit 2
mm10_v2_chr9_+_14276301_14276347	0.170549	GAGGUAG	ENSMUST00000034507.7|Sesn3|ENSMUSG00000032009.7|sestrin 3
mm10_v2_chr8_+_111094630_111094641	0.168822	GAGGUAG	ENSMUST00000135302.1|Pdpr|ENSMUSG00000033624.4|pyruvate dehydrogenase phosphatase regulatory subunit 	ENSMUST00000039333.3|Pdpr|ENSMUSG00000033624.4|pyruvate dehydrogenase phosphatase regulatory subunit
mm10_v2_chr5_+_135009152_135009317	0.167241	GAGGUAG	ENSMUST00000111216.1|Abhd11|ENSMUSG00000040532.8|abhydrolase domain containing 11 	ENSMUST00000046999.8|Abhd11|ENSMUSG00000040532.8|abhydrolase domain containing 11
mm10_v2_chr13_+_112660739_112660795	0.166355	GAGGUAG	ENSMUST00000052514.4|Slc38a9|ENSMUSG00000047789.4|solute carrier family 38, member 9
mm10_v2_chr14_-_45318556_45318579	0.165809	GAGGUAG	ENSMUST00000022378.7|Ero1l|ENSMUSG00000021831.8|ERO1-like (S. cerevisiae)
mm10_v2_chr1_-_165934900_165935036	0.163883	GAGGUAG	ENSMUST00000069609.5|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111427.2|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111426.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr8_-_46211284_46211284	0.162974	GAGGUAG	ENSMUST00000034049.4|Slc25a4|ENSMUSG00000031633.4|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4
mm10_v2_chr7_-_97417730_97417730	0.162104	GAGGUAG	ENSMUST00000043077.7|Thrsp|ENSMUSG00000035686.7|thyroid hormone responsive
mm10_v2_chr2_-_37443096_37443178	0.160777	GAGGUAG	ENSMUST00000102789.2|Zbtb26|ENSMUSG00000050714.8|zinc finger and BTB domain containing 26 	ENSMUST00000067043.4|Zbtb26|ENSMUSG00000050714.8|zinc finger and BTB domain containing 26 	ENSMUST00000112932.1|Zbtb6|ENSMUSG00000066798.3|zinc finger and BTB domain containing 6
mm10_v2_chr9_+_51765325_51765364	0.160163	GAGGUAG	ENSMUST00000065496.5|Arhgap20|ENSMUSG00000053199.7|Rho GTPase activating protein 20
mm10_v2_chr19_+_47579602_47579681	0.160074	GAGGUAG	ENSMUST00000026043.5|Slk|ENSMUSG00000025060.8|STE20-like kinase
mm10_v2_chr10_+_125966214_125966272	0.160022	GAGGUAG	ENSMUST00000074807.6|Lrig3|ENSMUSG00000020105.8|leucine-rich repeats and immunoglobulin-like domains 3
mm10_v2_chr18_-_61400363_61400449	0.158963	GAGGUAG	ENSMUST00000063307.5|Ppargc1b|ENSMUSG00000033871.8|peroxisome proliferative activated receptor, gamma, coactivator 1 beta 	ENSMUST00000075299.6|Ppargc1b|ENSMUSG00000033871.8|peroxisome proliferative activated receptor, gamma, coactivator 1 beta
mm10_v2_chr17_+_47630690_47630690	0.158514	GAGGUAG	ENSMUST00000024779.8|Usp49|ENSMUSG00000090115.1|ubiquitin specific peptidase 49
mm10_v2_chr4_-_56802265_56802331	0.158057	GAGGUAG	ENSMUST00000030140.2|Ikbkap|ENSMUSG00000028431.5|inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein
mm10_v2_chr1_-_78197112_78197134	0.15686	GAGGUAG	ENSMUST00000087086.6|Pax3|ENSMUSG00000004872.9|paired box gene 3
mm10_v2_chr13_+_60601921_60602039	0.154734	GAGGUAG	ENSMUST00000077453.5|Dapk1|ENSMUSG00000021559.7|death associated protein kinase 1
mm10_v2_chr15_+_6708372_6708396	0.153966	GAGGUAG	ENSMUST00000061656.6|Rictor|ENSMUSG00000050310.8|RPTOR independent companion of MTOR, complex 2
mm10_v2_chr11_-_76846968_76847045	0.152738	GAGGUAG	ENSMUST00000021201.5|Cpd|ENSMUSG00000020841.5|carboxypeptidase D
mm10_v2_chr6_+_86849488_86849628	0.151881	GAGGUAG	ENSMUST00000089519.6|Aak1|ENSMUSG00000057230.7|AP2 associated kinase 1 	ENSMUST00000113668.1|Aak1|ENSMUSG00000057230.7|AP2 associated kinase 1
mm10_v2_chr8_-_105289465_105289541	0.150922	GAGGUAG	ENSMUST00000171788.1|4931428F04Rik|ENSMUSG00000014837.8|RIKEN cDNA 4931428F04 gene 	ENSMUST00000014981.6|4931428F04Rik|ENSMUSG00000014837.8|RIKEN cDNA 4931428F04 gene
mm10_v2_chr16_+_30599717_30599734	0.149795	GAGGUAG	ENSMUST00000059078.3|Fam43a|ENSMUSG00000046546.3|family with sequence similarity 43, member A
mm10_v2_chr7_+_63444741_63444762	0.149411	GAGGUAG	ENSMUST00000058476.7|Otud7a|ENSMUSG00000033510.8|OTU domain containing 7A
mm10_v2_chr16_+_13109682_13109693	0.148305	GAGGUAG	ENSMUST00000023206.7|Ercc4|ENSMUSG00000022545.7|excision repair cross-complementing rodent repair deficiency, complementation group 4
mm10_v2_chr4_+_13743424_13743478	0.14727	GAGGUAG	ENSMUST00000006761.3|Runx1t1|ENSMUSG00000006586.9|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm10_v2_chr6_-_83441674_83441684	0.147064	GAGGUAG	ENSMUST00000089622.4|Tet3|ENSMUSG00000034832.9|tet methylcytosine dioxygenase 3
mm10_v2_chr14_+_70100083_70100145	0.146979	GAGGUAG	ENSMUST00000022680.7|Bin3|ENSMUSG00000022089.8|bridging integrator 3
mm10_v2_chr18_+_10725530_10725564	0.145877	GAGGUAG	ENSMUST00000052838.4|Mib1|ENSMUSG00000024294.7|mindbomb homolog 1 (Drosophila)
mm10_v2_chr5_+_121220191_121220243	0.145258	GAGGUAG	ENSMUST00000119892.2|Gm15800|ENSMUSG00000042744.10|predicted gene 15800 	ENSMUST00000042614.6|Gm15800|ENSMUSG00000042744.10|predicted gene 15800
mm10_v2_chr15_-_98871175_98871204	0.145135	GAGGUAG	ENSMUST00000178486.2|Kmt2d|ENSMUSG00000048154.10|lysine (K)-specific methyltransferase 2D 	ENSMUST00000023741.9|Kmt2d|ENSMUSG00000048154.10|lysine (K)-specific methyltransferase 2D
mm10_v2_chr13_+_75839868_75839881	0.144947	GAGGUAG	ENSMUST00000022082.7|Glrx|ENSMUSG00000021591.7|glutaredoxin
mm10_v2_chr17_-_83631892_83631934	0.144309	GAGGUAG	ENSMUST00000051482.1|Kcng3|ENSMUSG00000045053.1|potassium voltage-gated channel, subfamily G, member 3
mm10_v2_chr1_+_130717320_130717333	0.143332	GAGGUAG	ENSMUST00000049813.4|Yod1|ENSMUSG00000046404.4|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)
mm10_v2_chr14_+_32513486_32513548	0.141809	GAGGUAG	ENSMUST00000066807.6|Ercc6|ENSMUSG00000054051.6|excision repair cross-complementing rodent repair deficiency, complementation group 6
mm10_v2_chr2_-_3475027_3475086	0.140744	GAGGUAG	ENSMUST00000027956.2|Suv39h2|ENSMUSG00000026646.10|suppressor of variegation 3-9 homolog 2 (Drosophila)
mm10_v2_chr13_-_107022027_107022138	0.139323	GAGGUAG	ENSMUST00000117539.1|Kif2a|ENSMUSG00000021693.13|kinesin family member 2A 	ENSMUST00000122233.1|Kif2a|ENSMUSG00000021693.13|kinesin family member 2A 	ENSMUST00000022204.9|Kif2a|ENSMUSG00000021693.13|kinesin family member 2A 	ENSMUST00000159772.1|Kif2a|ENSMUSG00000021693.13|kinesin family member 2A
mm10_v2_chr1_+_74661714_74661789	0.136865	GAGGUAG	ENSMUST00000042125.8|Ttll4|ENSMUSG00000033257.8|tubulin tyrosine ligase-like family, member 4 	ENSMUST00000141119.1|Ttll4|ENSMUSG00000033257.8|tubulin tyrosine ligase-like family, member 4
mm10_v2_chr3_-_31310349_31310378	0.13644	GAGGUAG	ENSMUST00000091259.2|Slc7a14|ENSMUSG00000069072.3|solute carrier family 7 (cationic amino acid transporter, y+ system), member 14
mm10_v2_chr15_-_58214882_58214926	0.136374	GAGGUAG	ENSMUST00000022986.6|Fbxo32|ENSMUSG00000022358.6|F-box protein 32
mm10_v2_chr16_+_56204313_56204338	0.136348	GAGGUAG	ENSMUST00000160116.1|Impg2|ENSMUSG00000035270.9|interphotoreceptor matrix proteoglycan 2 	ENSMUST00000069936.7|Impg2|ENSMUSG00000035270.9|interphotoreceptor matrix proteoglycan 2
mm10_v2_chr1_-_172027269_172027313	0.136019	GAGGUAG	ENSMUST00000027837.6|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila) 	ENSMUST00000111264.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr6_-_23132981_23132992	0.134471	GAGGUAG	ENSMUST00000031707.7|Aass|ENSMUSG00000029695.7|aminoadipate-semialdehyde synthase
mm10_v2_chr10_+_79927039_79927139	0.134361	GAGGUAG	ENSMUST00000019708.5|Arid3a|ENSMUSG00000019564.6|AT rich interactive domain 3A (BRIGHT-like) 	ENSMUST00000105377.1|Arid3a|ENSMUSG00000019564.6|AT rich interactive domain 3A (BRIGHT-like)
mm10_v2_chr15_-_84987958_84988018	0.133354	GAGGUAG	ENSMUST00000165743.1|5031439G07Rik|ENSMUSG00000036046.8|RIKEN cDNA 5031439G07 gene 	ENSMUST00000047144.6|5031439G07Rik|ENSMUSG00000036046.8|RIKEN cDNA 5031439G07 gene
mm10_v2_chr13_-_43304153_43304213	0.131424	GAGGUAG	ENSMUST00000055341.5|Gfod1|ENSMUSG00000051335.5|glucose-fructose oxidoreductase domain containing 1
mm10_v2_chr9_-_108452377_108452412	0.131187	GAGGUAG	ENSMUST00000035232.7|Klhdc8b|ENSMUSG00000032609.7|kelch domain containing 8B
mm10_v2_chr6_+_7844806_7844859	0.130884	GAGGUAG	ENSMUST00000040159.4|C1galt1|ENSMUSG00000042460.4|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
mm10_v2_chr13_+_55209776_55209788	0.130831	GAGGUAG	ENSMUST00000099490.2|Nsd1|ENSMUSG00000021488.7|nuclear receptor-binding SET-domain protein 1
mm10_v2_chr19_+_41482632_41482688	0.129078	GAGGUAG	ENSMUST00000067795.5|Lcor|ENSMUSG00000025019.9|ligand dependent nuclear receptor corepressor
mm10_v2_chr1_-_143776973_143777068	0.128952	GAGGUAG	ENSMUST00000159879.1|Trove2|ENSMUSG00000018199.8|TROVE domain family, member 2
mm10_v2_chr3_-_53657339_53657391	0.128897	GAGGUAG	ENSMUST00000091137.4|Frem2|ENSMUSG00000037016.7|Fras1 related extracellular matrix protein 2
mm10_v2_chrX_-_18461371_18461402	0.12754	GAGGUAG	ENSMUST00000044188.4|4930578C19Rik|ENSMUSG00000037358.6|RIKEN cDNA 4930578C19 gene
mm10_v2_chr2_-_122611238_122611303	0.127535	GAGGUAG	ENSMUST00000028624.8|Gatm|ENSMUSG00000027199.8|glycine amidinotransferase (L-arginine:glycine amidinotransferase)
mm10_v2_chr17_-_24251382_24251409	0.126913	GAGGUAG	ENSMUST00000115390.3|Ccnf|ENSMUSG00000072082.6|cyclin F
mm10_v2_chr7_-_17062384_17062427	0.126734	GAGGUAG	ENSMUST00000153833.1|Hif3a|ENSMUSG00000004328.9|hypoxia inducible factor 3, alpha subunit 	ENSMUST00000108492.2|Hif3a|ENSMUSG00000004328.9|hypoxia inducible factor 3, alpha subunit
mm10_v2_chr7_-_81706905_81706964	0.12646	GAGGUAG	ENSMUST00000026922.7|Homer2|ENSMUSG00000025813.7|homer homolog 2 (Drosophila)
mm10_v2_chr1_+_37997975_37998010	0.125456	GAGGUAG	ENSMUST00000027252.7|Eif5b|ENSMUSG00000026083.7|eukaryotic translation initiation factor 5B
mm10_v2_chr2_+_69822370_69822511	0.12544	GAGGUAG	ENSMUST00000053087.3|Klhl23|ENSMUSG00000042155.3|kelch-like 23
mm10_v2_chr9_+_113812547_113812621	0.123619	GAGGUAG	ENSMUST00000166734.2|Clasp2|ENSMUSG00000033392.9|CLIP associating protein 2 	ENSMUST00000111838.2|Clasp2|ENSMUSG00000033392.9|CLIP associating protein 2 	ENSMUST00000163895.2|Clasp2|ENSMUSG00000033392.9|CLIP associating protein 2
mm10_v2_chrX_+_143099594_143099594	0.123324	GAGGUAG	ENSMUST00000165829.1|Rgag1|ENSMUSG00000085584.2|retrotransposon gag domain containing 1
mm10_v2_chr13_+_35659856_35659870	0.122867	GAGGUAG	ENSMUST00000075220.6|Cdyl|ENSMUSG00000059288.7|chromodomain protein, Y chromosome-like
mm10_v2_chr19_+_36554661_36554688	0.120278	GAGGUAG	ENSMUST00000169036.2|Hectd2|ENSMUSG00000041180.7|HECT domain containing 2 	ENSMUST00000047247.5|Hectd2|ENSMUSG00000041180.7|HECT domain containing 2
mm10_v2_chr8_-_47352348_47352367	0.119845	GAGGUAG	ENSMUST00000110367.2|Stox2|ENSMUSG00000038143.8|storkhead box 2
mm10_v2_chr4_+_59626189_59626253	0.119567	GAGGUAG	ENSMUST00000070150.4|E130308A19Rik|ENSMUSG00000045071.7|RIKEN cDNA E130308A19 gene 	ENSMUST00000052420.6|E130308A19Rik|ENSMUSG00000045071.7|RIKEN cDNA E130308A19 gene
mm10_v2_chr11_+_93886157_93886219	0.119401	GAGGUAG	ENSMUST00000063718.4|Mbtd1|ENSMUSG00000059474.7|mbt domain containing 1 	ENSMUST00000107854.2|Mbtd1|ENSMUSG00000059474.7|mbt domain containing 1
mm10_v2_chr4_+_47208005_47208161	0.119164	GAGGUAG	ENSMUST00000082303.6|Col15a1|ENSMUSG00000028339.11|collagen, type XV, alpha 1 	ENSMUST00000102917.4|Col15a1|ENSMUSG00000028339.11|collagen, type XV, alpha 1
mm10_v2_chr11_-_69801716_69801857	0.116944	GAGGUAG	ENSMUST00000011285.4|Fgf11|ENSMUSG00000042826.7|fibroblast growth factor 11 	ENSMUST00000102585.1|Fgf11|ENSMUSG00000042826.7|fibroblast growth factor 11
mm10_v2_chr8_-_23208407_23208453	0.115979	GAGGUAG	ENSMUST00000167004.1|Agpat6|ENSMUSG00000031545.5|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)
mm10_v2_chr4_+_48124903_48124938	0.114615	GAGGUAG	ENSMUST00000107721.1|Stx17|ENSMUSG00000061455.7|syntaxin 17 	ENSMUST00000153502.1|Stx17|ENSMUSG00000061455.7|syntaxin 17 	ENSMUST00000107720.2|Stx17|ENSMUSG00000061455.7|syntaxin 17 	ENSMUST00000064765.4|Stx17|ENSMUSG00000061455.7|syntaxin 17
mm10_v2_chr15_-_101054399_101054399	0.114364	GAGGUAG	ENSMUST00000178140.1|Fignl2|ENSMUSG00000095440.1|fidgetin-like 2
mm10_v2_chr14_+_111675113_111675119	0.113026	GAGGUAG	ENSMUST00000042767.7|Slitrk5|ENSMUSG00000033214.9|SLIT and NTRK-like family, member 5
mm10_v2_chr10_+_22645011_22645109	0.111315	GAGGUAG	ENSMUST00000042261.4|Slc2a12|ENSMUSG00000037490.5|solute carrier family 2 (facilitated glucose transporter), member 12
mm10_v2_chr17_-_43667015_43667163	0.110638	GAGGUAG	ENSMUST00000024705.4|Slc25a27|ENSMUSG00000023912.9|solute carrier family 25, member 27
mm10_v2_chr1_-_179803625_179803702	0.110451	GAGGUAG	ENSMUST00000027768.7|Ahctf1|ENSMUSG00000026491.7|AT hook containing transcription factor 1
mm10_v2_chr5_+_88583527_88583590	0.109533	GAGGUAG	ENSMUST00000031229.6|Rufy3|ENSMUSG00000029291.7|RUN and FYVE domain containing 3
mm10_v2_chr8_-_111027752_111027791	0.109429	GAGGUAG	ENSMUST00000040241.8|Ddx19b|ENSMUSG00000033658.10|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b
mm10_v2_chr19_-_42612766_42612813	0.108772	GAGGUAG	ENSMUST00000166128.1|Loxl4|ENSMUSG00000025185.8|lysyl oxidase-like 4 	ENSMUST00000026190.7|Loxl4|ENSMUSG00000025185.8|lysyl oxidase-like 4 	ENSMUST00000164786.1|Loxl4|ENSMUSG00000025185.8|lysyl oxidase-like 4
mm10_v2_chr15_+_100469034_100469075	0.108	GAGGUAG	ENSMUST00000037001.8|Letmd1|ENSMUSG00000037353.8|LETM1 domain containing 1
mm10_v2_chr2_+_138256530_138256615	0.107926	GAGGUAG	ENSMUST00000091556.5|Btbd3|ENSMUSG00000062098.5|BTB (POZ) domain containing 3
mm10_v2_chr14_-_33447142_33447179	0.106576	GAGGUAG	ENSMUST00000111944.3|Mapk8|ENSMUSG00000021936.7|mitogen-activated protein kinase 8 	ENSMUST00000022504.5|Mapk8|ENSMUSG00000021936.7|mitogen-activated protein kinase 8 	ENSMUST00000111945.2|Mapk8|ENSMUSG00000021936.7|mitogen-activated protein kinase 8
mm10_v2_chr2_+_152226839_152226908	0.10519	GAGGUAG	ENSMUST00000099224.3|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide 	ENSMUST00000124791.1|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide 	ENSMUST00000133119.1|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide
mm10_v2_chr12_+_24708241_24708292	0.104668	GAGGUAG	ENSMUST00000020980.5|Rrm2|ENSMUSG00000020649.5|ribonucleotide reductase M2
mm10_v2_chr17_+_27856443_27856511	0.104107	GAGGUAG	ENSMUST00000114849.1|Uhrf1bp1|ENSMUSG00000039512.11|UHRF1 (ICBP90) binding protein 1
mm10_v2_chr4_+_59189240_59189257	0.103043	GAGGUAG	ENSMUST00000030074.7|Ugcg|ENSMUSG00000028381.8|UDP-glucose ceramide glucosyltransferase
mm10_v2_chr13_+_83504032_83504050	0.10296	GAGGUAG	ENSMUST00000163888.1|Mef2c|ENSMUSG00000005583.10|myocyte enhancer factor 2C 	ENSMUST00000005722.7|Mef2c|ENSMUSG00000005583.10|myocyte enhancer factor 2C
mm10_v2_chr1_-_9748376_9748451	0.101977	GAGGUAG	ENSMUST00000057438.6|Vcpip1|ENSMUSG00000045210.8|valosin containing protein (p97)/p47 complex interacting protein 1
mm10_v2_chrX_-_157598656_157598715	0.101299	GAGGUAG	ENSMUST00000149249.1|Mbtps2|ENSMUSG00000046873.12|membrane-bound transcription factor peptidase, site 2 	ENSMUST00000058098.8|Mbtps2|ENSMUSG00000046873.12|membrane-bound transcription factor peptidase, site 2
mm10_v2_chr10_+_128377086_128377155	0.0995352	GAGGUAG	ENSMUST00000014642.3|Ankrd52|ENSMUSG00000014498.3|ankyrin repeat domain 52
mm10_v2_chr3_+_14578609_14578687	0.0992586	GAGGUAG	ENSMUST00000029069.6|E2f5|ENSMUSG00000027552.8|E2F transcription factor 5 	ENSMUST00000165922.2|E2f5|ENSMUSG00000027552.8|E2F transcription factor 5
mm10_v2_chr2_+_112379204_112379253	0.0991069	GAGGUAG	ENSMUST00000028552.3|Katnbl1|ENSMUSG00000027132.3|katanin p80 subunit B like 1
mm10_v2_chrX_-_23365044_23365090	0.0976039	GAGGUAG	ENSMUST00000115313.1|Klhl13|ENSMUSG00000036782.7|kelch-like 13
mm10_v2_chr16_-_11254268_11254303	0.0968486	GAGGUAG	ENSMUST00000167571.1|Gspt1|ENSMUSG00000062203.8|G1 to S phase transition 1
mm10_v2_chr12_+_29938036_29938059	0.0968401	GAGGUAG	ENSMUST00000122328.1|Pxdn|ENSMUSG00000020674.10|peroxidasin homolog (Drosophila) 	ENSMUST00000118321.1|Pxdn|ENSMUSG00000020674.10|peroxidasin homolog (Drosophila)
mm10_v2_chr5_+_108461222_108461241	0.096615	GAGGUAG	ENSMUST00000046975.5|Pcgf3|ENSMUSG00000033623.7|polycomb group ring finger 3 	ENSMUST00000112597.1|Pcgf3|ENSMUSG00000033623.7|polycomb group ring finger 3
mm10_v2_chr11_+_83409655_83409718	0.0952944	GAGGUAG	ENSMUST00000175848.1|Rasl10b|ENSMUSG00000020684.8|RAS-like, family 10, member B 	ENSMUST00000108140.3|Rasl10b|ENSMUSG00000020684.8|RAS-like, family 10, member B
mm10_v2_chr8_-_3279606_3279622	0.094771	GAGGUAG	ENSMUST00000091291.4|Insr|ENSMUSG00000005534.9|insulin receptor
mm10_v2_chr1_+_36471590_36471620	0.0932434	GAGGUAG	ENSMUST00000153128.1|Cnnm4|ENSMUSG00000037408.9|cyclin M4
mm10_v2_chr7_-_81566939_81566993	0.0930594	GAGGUAG	ENSMUST00000042318.5|Fsd2|ENSMUSG00000038663.7|fibronectin type III and SPRY domain containing 2
mm10_v2_chr5_+_96373955_96373955	0.092994	GAGGUAG	ENSMUST00000036019.4|Fras1|ENSMUSG00000034687.4|Fraser syndrome 1 homolog (human)
mm10_v2_chr7_+_92741603_92741715	0.0922051	GAGGUAG	ENSMUST00000032879.7|Rab30|ENSMUSG00000030643.7|RAB30, member RAS oncogene family
mm10_v2_chr11_-_46166397_46166508	0.0906275	GAGGUAG	ENSMUST00000020679.2|Nipal4|ENSMUSG00000020411.2|NIPA-like domain containing 4
mm10_v2_chrX_-_52165252_52165280	0.0901124	GAGGUAG	ENSMUST00000033450.2|Gpc4|ENSMUSG00000031119.4|glypican 4
mm10_v2_chr3_+_103279293_103279293	0.0899026	GAGGUAG	ENSMUST00000029444.6|Trim33|ENSMUSG00000033014.6|tripartite motif-containing 33 	ENSMUST00000106860.1|Trim33|ENSMUSG00000033014.6|tripartite motif-containing 33
mm10_v2_chr7_-_116038734_116038750	0.0886563	GAGGUAG	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr7_+_101663633_101663679	0.0886035	GAGGUAG	ENSMUST00000001884.7|Clpb|ENSMUSG00000001829.10|ClpB caseinolytic peptidase B
mm10_v2_chr1_-_133753681_133753857	0.0876977	GAGGUAG	ENSMUST00000125659.1|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4 	ENSMUST00000165602.2|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4 	ENSMUST00000048953.7|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4
mm10_v2_chr17_+_36942910_36942924	0.0846248	GAGGUAG	ENSMUST00000040498.5|Rnf39|ENSMUSG00000036492.6|ring finger protein 39
mm10_v2_chr6_-_82939676_82939769	0.0845476	GAGGUAG	ENSMUST00000000641.9|Sema4f|ENSMUSG00000000627.9|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain 	ENSMUST00000113982.1|Sema4f|ENSMUSG00000000627.9|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain
mm10_v2_chr12_-_79296266_79296310	0.0833556	GAGGUAG	ENSMUST00000021547.6|Zfyve26|ENSMUSG00000066440.4|zinc finger, FYVE domain containing 26
mm10_v2_chr10_-_60219260_60219295	0.0831581	GAGGUAG	ENSMUST00000135158.2|Chst3|ENSMUSG00000057337.7|carbohydrate (chondroitin 6/keratan) sulfotransferase 3
mm10_v2_chr9_+_78113275_78113346	0.0825549	GAGGUAG	ENSMUST00000009972.5|Ick|ENSMUSG00000009828.9|intestinal cell kinase 	ENSMUST00000117330.1|Ick|ENSMUSG00000009828.9|intestinal cell kinase 	ENSMUST00000044551.7|Ick|ENSMUSG00000009828.9|intestinal cell kinase
mm10_v2_chr10_+_127677064_127677099	0.0825455	GAGGUAG	ENSMUST00000118612.1|Tmem194|ENSMUSG00000040195.5|transmembrane protein 194 	ENSMUST00000048099.4|Tmem194|ENSMUSG00000040195.5|transmembrane protein 194
mm10_v2_chr4_+_49632046_49632110	0.0821119	GAGGUAG	ENSMUST00000156314.1|Rnf20|ENSMUSG00000028309.8|ring finger protein 20 	ENSMUST00000167496.1|Rnf20|ENSMUSG00000028309.8|ring finger protein 20 	ENSMUST00000029989.4|Rnf20|ENSMUSG00000028309.8|ring finger protein 20 	ENSMUST00000146547.1|Rnf20|ENSMUSG00000028309.8|ring finger protein 20
mm10_v2_chr9_-_108190352_108190420	0.0819431	GAGGUAG	ENSMUST00000035208.7|Bsn|ENSMUSG00000032589.8|bassoon
mm10_v2_chr11_-_85235065_85235137	0.0814453	GAGGUAG	ENSMUST00000018625.9|Appbp2|ENSMUSG00000018481.9|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
mm10_v2_chr17_-_80290476_80290476	0.0809017	GAGGUAG	ENSMUST00000086555.3|Dhx57|ENSMUSG00000035051.8|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 	ENSMUST00000038166.7|Dhx57|ENSMUSG00000035051.8|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
mm10_v2_chr1_+_185204165_185204183	0.0792542	GAGGUAG	ENSMUST00000069652.6|Rab3gap2|ENSMUSG00000039318.7|RAB3 GTPase activating protein subunit 2
mm10_v2_chr9_-_30922452_30922567	0.0783673	GAGGUAG	ENSMUST00000065112.6|Adamts15|ENSMUSG00000033453.7|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15
mm10_v2_chr4_-_126429501_126429556	0.0780362	GAGGUAG	ENSMUST00000069097.6|Ago3|ENSMUSG00000028842.9|argonaute RISC catalytic subunit 3
mm10_v2_chrX_-_7188713_7188743	0.0778455	GAGGUAG	ENSMUST00000004428.7|Clcn5|ENSMUSG00000004317.8|chloride channel 5
mm10_v2_chr5_+_88886809_88886825	0.0774946	GAGGUAG	ENSMUST00000148750.1|Slc4a4|ENSMUSG00000060961.8|solute carrier family 4 (anion exchanger), member 4
mm10_v2_chr2_+_28641227_28641262	0.0771583	GAGGUAG	ENSMUST00000028155.5|Tsc1|ENSMUSG00000026812.10|tuberous sclerosis 1 	ENSMUST00000113869.1|Tsc1|ENSMUSG00000026812.10|tuberous sclerosis 1 	ENSMUST00000113867.2|Tsc1|ENSMUSG00000026812.10|tuberous sclerosis 1
mm10_v2_chr1_+_136131382_136131404	0.0771549	GAGGUAG	ENSMUST00000075164.4|Kif21b|ENSMUSG00000041642.12|kinesin family member 21B
mm10_v2_chr11_-_90390895_90390926	0.0770493	GAGGUAG	ENSMUST00000004051.7|Hlf|ENSMUSG00000003949.10|hepatic leukemia factor
mm10_v2_chr2_+_15055274_15055379	0.0761814	GAGGUAG	ENSMUST00000069870.3|Arl5b|ENSMUSG00000017418.7|ADP-ribosylation factor-like 5B
mm10_v2_chr15_+_103240405_103240432	0.0759513	GAGGUAG	ENSMUST00000036004.9|Hnrnpa1|ENSMUSG00000046434.9|heterogeneous nuclear ribonucleoprotein A1 	ENSMUST00000087351.7|Hnrnpa1|ENSMUSG00000046434.9|heterogeneous nuclear ribonucleoprotein A1
mm10_v2_chr1_+_133363564_133363581	0.0756896	GAGGUAG	ENSMUST00000135222.2|Etnk2|ENSMUSG00000070644.7|ethanolamine kinase 2
mm10_v2_chr5_+_23434435_23434471	0.0750895	GAGGUAG	ENSMUST00000094962.2|Kmt2e|ENSMUSG00000029004.9|lysine (K)-specific methyltransferase 2E 	ENSMUST00000115128.1|Kmt2e|ENSMUSG00000029004.9|lysine (K)-specific methyltransferase 2E
mm10_v2_chr6_-_112947246_112947277	0.0747871	GAGGUAG	ENSMUST00000088373.4|Srgap3|ENSMUSG00000030257.10|SLIT-ROBO Rho GTPase activating protein 3
mm10_v2_chr6_-_40436104_40436151	0.0746213	GAGGUAG	ENSMUST00000039008.6|E330009J07Rik|ENSMUSG00000037172.8|RIKEN cDNA E330009J07 gene 	ENSMUST00000101492.3|E330009J07Rik|ENSMUSG00000037172.8|RIKEN cDNA E330009J07 gene
mm10_v2_chr8_+_104591464_104591505	0.0746177	GAGGUAG	ENSMUST00000059588.6|Pdp2|ENSMUSG00000048371.7|pyruvate dehyrogenase phosphatase catalytic subunit 2
mm10_v2_chr10_+_58446845_58446928	0.0743761	GAGGUAG	ENSMUST00000003310.5|Ranbp2|ENSMUSG00000003226.6|RAN binding protein 2
mm10_v2_chr5_+_130448801_130448830	0.0736224	GAGGUAG	ENSMUST00000111288.2|Caln1|ENSMUSG00000060371.6|calneuron 1
mm10_v2_chr3_+_136670076_136670186	0.072788	GAGGUAG	ENSMUST00000070198.7|Ppp3ca|ENSMUSG00000028161.11|protein phosphatase 3, catalytic subunit, alpha isoform
mm10_v2_chr19_+_41593363_41593363	0.0712253	GAGGUAG	ENSMUST00000099454.3|AI606181|ENSMUSG00000074873.3|expressed sequence AI606181
mm10_v2_chr1_-_166002591_166002609	0.0699527	GAGGUAG	ENSMUST00000111429.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000176800.1|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr5_-_135545108_135545128	0.0696204	GAGGUAG	ENSMUST00000060311.8|Hip1|ENSMUSG00000039959.9|huntingtin interacting protein 1
mm10_v2_chr3_+_31095052_31095125	0.069336	GAGGUAG	ENSMUST00000118470.1|Skil|ENSMUSG00000027660.10|SKI-like 	ENSMUST00000029194.5|Skil|ENSMUSG00000027660.10|SKI-like 	ENSMUST00000123532.1|Skil|ENSMUSG00000027660.10|SKI-like 	ENSMUST00000117728.1|Skil|ENSMUSG00000027660.10|SKI-like
mm10_v2_chr3_-_89913144_89913172	0.0688564	GAGGUAG	ENSMUST00000029559.6|Il6ra|ENSMUSG00000027947.7|interleukin 6 receptor, alpha
mm10_v2_chr3_-_133544390_133544412	0.0685829	GAGGUAG	ENSMUST00000098603.3|Tet2|ENSMUSG00000040943.8|tet methylcytosine dioxygenase 2
mm10_v2_chr1_+_134709293_134709318	0.0685463	GAGGUAG	ENSMUST00000121990.1|Syt2|ENSMUSG00000026452.9|synaptotagmin II
mm10_v2_chr10_+_88379217_88379299	0.0662895	GAGGUAG	ENSMUST00000130301.1|Gnptab|ENSMUSG00000035311.10|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits 	ENSMUST00000020251.8|Gnptab|ENSMUSG00000035311.10|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
mm10_v2_chr16_-_87432597_87432613	0.066214	GAGGUAG	ENSMUST00000039449.7|Ltn1|ENSMUSG00000052299.8|listerin E3 ubiquitin protein ligase 1
mm10_v2_chr16_-_19983005_19983037	0.0654292	GAGGUAG	ENSMUST00000058839.8|Klhl6|ENSMUSG00000043008.8|kelch-like 6
mm10_v2_chr9_+_75037614_75037701	0.0645538	GAGGUAG	ENSMUST00000168166.1|Arpp19|ENSMUSG00000007656.7|cAMP-regulated phosphoprotein 19 	ENSMUST00000169492.1|Arpp19|ENSMUSG00000007656.7|cAMP-regulated phosphoprotein 19 	ENSMUST00000170308.1|Arpp19|ENSMUSG00000007656.7|cAMP-regulated phosphoprotein 19
mm10_v2_chr6_-_35539765_35539888	0.0641896	GAGGUAG	ENSMUST00000031866.5|Mtpn|ENSMUSG00000029840.5|myotrophin
mm10_v2_chr7_+_67952817_67952859	0.0639521	GAGGUAG	ENSMUST00000005671.8|Igf1r|ENSMUSG00000005533.9|insulin-like growth factor I receptor
mm10_v2_chrX_+_73342614_73342629	0.0633886	GAGGUAG	ENSMUST00000114499.1|Zfp275|ENSMUSG00000031365.7|zinc finger protein 275 	ENSMUST00000033731.3|Zfp275|ENSMUSG00000031365.7|zinc finger protein 275
mm10_v2_chr1_-_181842334_181842401	0.0630809	GAGGUAG	ENSMUST00000005003.6|Lbr|ENSMUSG00000004880.6|lamin B receptor
mm10_v2_chr8_+_90828820_90828842	0.0630727	GAGGUAG	ENSMUST00000109614.2|Chd9|ENSMUSG00000056608.7|chromodomain helicase DNA binding protein 9 	ENSMUST00000048665.6|Chd9|ENSMUSG00000056608.7|chromodomain helicase DNA binding protein 9
mm10_v2_chr11_+_72689997_72690015	0.0630124	GAGGUAG	ENSMUST00000155998.1|Ankfy1|ENSMUSG00000020790.8|ankyrin repeat and FYVE domain containing 1
mm10_v2_chr13_+_96924674_96924694	0.0627028	GAGGUAG	ENSMUST00000171324.1|Gcnt4|ENSMUSG00000091387.1|glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)
mm10_v2_chr1_+_121431049_121431124	0.0623865	GAGGUAG	ENSMUST00000036025.9|Ccdc93|ENSMUSG00000026339.12|coiled-coil domain containing 93 	ENSMUST00000112621.1|Ccdc93|ENSMUSG00000026339.12|coiled-coil domain containing 93
mm10_v2_chrX_-_41911877_41911912	0.061683	GAGGUAG	ENSMUST00000047037.8|Thoc2|ENSMUSG00000037475.9|THO complex 2
mm10_v2_chr3_+_109123104_109123167	0.0611854	GAGGUAG	ENSMUST00000029477.6|Slc25a24|ENSMUSG00000040322.6|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24
mm10_v2_chr18_-_21300129_21300168	0.0611548	GAGGUAG	ENSMUST00000049260.6|Garem|ENSMUSG00000042680.7|GRB2 associated, regulator of MAPK1
mm10_v2_chr7_-_81934316_81934473	0.0608301	GAGGUAG	ENSMUST00000026094.5|Hdgfrp3|ENSMUSG00000025104.7|hepatoma-derived growth factor, related protein 3 	ENSMUST00000107305.1|Hdgfrp3|ENSMUSG00000025104.7|hepatoma-derived growth factor, related protein 3
mm10_v2_chr11_-_115603866_115604051	0.0604234	GAGGUAG	ENSMUST00000125097.1|Gga3|ENSMUSG00000020740.7|golgi associated, gamma adaptin ear containing, ARF binding protein 3 	ENSMUST00000106508.3|Gga3|ENSMUSG00000020740.7|golgi associated, gamma adaptin ear containing, ARF binding protein 3 	ENSMUST00000019135.7|Gga3|ENSMUSG00000020740.7|golgi associated, gamma adaptin ear containing, ARF binding protein 3
mm10_v2_chr10_+_76032598_76032660	0.0603994	GAGGUAG	ENSMUST00000061617.6|Zfp280b|ENSMUSG00000049764.7|zinc finger protein 280B
mm10_v2_chr4_+_59805829_59805914	0.0602405	GAGGUAG	ENSMUST00000030080.6|Snx30|ENSMUSG00000028385.8|sorting nexin family member 30
mm10_v2_chr16_+_87698904_87698959	0.0602377	GAGGUAG	ENSMUST00000026703.5|Bach1|ENSMUSG00000025612.5|BTB and CNC homology 1
mm10_v2_chrX_+_36328353_36328418	0.0599957	GAGGUAG	ENSMUST00000016383.3|Lonrf3|ENSMUSG00000016239.5|LON peptidase N-terminal domain and ring finger 3
mm10_v2_chrX_-_108834303_108834381	0.0599758	GAGGUAG	ENSMUST00000101283.3|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3 	ENSMUST00000150434.1|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3
mm10_v2_chr11_+_3488275_3488287	0.0598169	GAGGUAG	ENSMUST00000064265.6|Pla2g3|ENSMUSG00000034579.11|phospholipase A2, group III
mm10_v2_chr11_-_20112876_20112925	0.0597918	GAGGUAG	ENSMUST00000000137.7|Actr2|ENSMUSG00000020152.7|ARP2 actin-related protein 2
mm10_v2_chr12_+_86361112_86361131	0.0591674	GAGGUAG	ENSMUST00000116402.3|Esrrb|ENSMUSG00000021255.11|estrogen related receptor, beta
mm10_v2_chr6_+_65042575_65042667	0.0583469	GAGGUAG	ENSMUST00000031984.6|Smarcad1|ENSMUSG00000029920.7|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm10_v2_chr15_-_77307043_77307058	0.0573117	GAGGUAG	ENSMUST00000048145.5|Rbfox2|ENSMUSG00000033565.10|RNA binding protein, fox-1 homolog (C. elegans) 2 	ENSMUST00000171751.1|Rbfox2|ENSMUSG00000033565.10|RNA binding protein, fox-1 homolog (C. elegans) 2
mm10_v2_chr19_-_10304867_10304954	0.0565144	GAGGUAG	ENSMUST00000039327.4|Dagla|ENSMUSG00000035735.4|diacylglycerol lipase, alpha
mm10_v2_chr8_-_109737714_109737786	0.0545829	GAGGUAG	ENSMUST00000093162.3|Atxn1l|ENSMUSG00000069895.3|ataxin 1-like
mm10_v2_chr18_+_31759817_31759851	0.0544684	GAGGUAG	ENSMUST00000115808.2|Ammecr1l|ENSMUSG00000041915.8|AMME chromosomal region gene 1-like
mm10_v2_chr1_-_176275274_176275308	0.054293	GAGGUAG	ENSMUST00000111166.1|Pld5|ENSMUSG00000055214.9|phospholipase D family, member 5 	ENSMUST00000065967.7|Pld5|ENSMUSG00000055214.9|phospholipase D family, member 5
mm10_v2_chr7_+_120677579_120677630	0.0538614	GAGGUAG	ENSMUST00000060175.6|BC030336|ENSMUSG00000046096.6|cDNA sequence BC030336
mm10_v2_chr18_-_75697639_75697697	0.0532004	GAGGUAG	ENSMUST00000165559.1|Ctif|ENSMUSG00000052928.8|CBP80/20-dependent translation initiation factor
mm10_v2_chr10_+_11281304_11281357	0.0531907	GAGGUAG	ENSMUST00000129456.1|Fbxo30|ENSMUSG00000047648.7|F-box protein 30
mm10_v2_chr1_-_190978954_190978998	0.0518398	GAGGUAG	ENSMUST00000047409.6|Vash2|ENSMUSG00000037568.6|vasohibin 2
mm10_v2_chr16_+_84835070_84835124	0.0515124	GAGGUAG	ENSMUST00000009120.7|Gabpa|ENSMUSG00000008976.10|GA repeat binding protein, alpha
mm10_v2_chr10_-_43540945_43541024	0.0514859	GAGGUAG	ENSMUST00000147196.1|1700021F05Rik|ENSMUSG00000019797.4|RIKEN cDNA 1700021F05 gene 	ENSMUST00000019932.3|1700021F05Rik|ENSMUSG00000019797.4|RIKEN cDNA 1700021F05 gene
mm10_v2_chr9_+_110132015_110132102	0.0510118	GAGGUAG	ENSMUST00000088716.5|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000111969.1|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000035057.7|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000111966.1|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000111968.1|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
mm10_v2_chr4_+_115784799_115784837	0.0495013	GAGGUAG	ENSMUST00000177280.1|Atpaf1|ENSMUSG00000028710.10|ATP synthase mitochondrial F1 complex assembly factor 1 	ENSMUST00000176047.1|Atpaf1|ENSMUSG00000028710.10|ATP synthase mitochondrial F1 complex assembly factor 1 	ENSMUST00000030478.6|Atpaf1|ENSMUSG00000028710.10|ATP synthase mitochondrial F1 complex assembly factor 1
mm10_v2_chr11_+_54100924_54101025	0.0484851	GAGGUAG	ENSMUST00000093107.5|P4ha2|ENSMUSG00000018906.8|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide 	ENSMUST00000019050.5|P4ha2|ENSMUSG00000018906.8|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide 	ENSMUST00000174616.1|P4ha2|ENSMUSG00000018906.8|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide 	ENSMUST00000129499.1|P4ha2|ENSMUSG00000018906.8|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide 	ENSMUST00000126840.1|P4ha2|ENSMUSG00000018906.8|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide
mm10_v2_chr6_-_115994953_115995010	0.0483062	GAGGUAG	ENSMUST00000015511.8|Plxnd1|ENSMUSG00000030123.9|plexin D1
mm10_v2_chr2_+_33216051_33216084	0.0480938	GAGGUAG	ENSMUST00000004208.5|Angptl2|ENSMUSG00000004105.6|angiopoietin-like 2
mm10_v2_chr10_-_13324160_13324242	0.0478898	GAGGUAG	ENSMUST00000105545.4|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr10_-_12861735_12861735	0.0467368	GAGGUAG	ENSMUST00000076817.4|Utrn|ENSMUSG00000019820.9|utrophin
mm10_v2_chr1_-_21079162_21079243	0.046582	GAGGUAG	ENSMUST00000037998.4|Tram2|ENSMUSG00000041779.4|translocating chain-associating membrane protein 2
mm10_v2_chr10_-_94944578_94944578	0.0461333	GAGGUAG	ENSMUST00000099337.3|Plxnc1|ENSMUSG00000074785.4|plexin C1
mm10_v2_chr14_-_118132763_118132774	0.045072	GAGGUAG	ENSMUST00000022727.8|Tgds|ENSMUSG00000022130.9|TDP-glucose 4,6-dehydratase
mm10_v2_chrX_+_138914422_138914438	0.0446094	GAGGUAG	ENSMUST00000064937.7|Nrk|ENSMUSG00000052854.9|Nik related kinase 	ENSMUST00000113052.1|Nrk|ENSMUSG00000052854.9|Nik related kinase
mm10_v2_chr17_-_68004075_68004140	0.044576	GAGGUAG	ENSMUST00000024840.5|Arhgap28|ENSMUSG00000024043.7|Rho GTPase activating protein 28
mm10_v2_chr18_+_9958147_9958186	0.0443911	GAGGUAG	ENSMUST00000025137.7|Thoc1|ENSMUSG00000024287.7|THO complex 1
mm10_v2_chr14_-_88471396_88471396	0.0442982	GAGGUAG	ENSMUST00000061628.5|Pcdh20|ENSMUSG00000050505.6|protocadherin 20
mm10_v2_chrX_+_82948861_82948915	0.0442179	GAGGUAG	ENSMUST00000114000.1|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy
mm10_v2_chr1_-_163313661_163313710	0.0429203	GAGGUAG	ENSMUST00000174397.1|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1 	ENSMUST00000075805.6|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1 	ENSMUST00000027878.7|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1
mm10_v2_chr2_+_18064564_18064644	0.0427307	GAGGUAG	ENSMUST00000114671.1|Mllt10|ENSMUSG00000026743.10|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm10_v2_chr12_-_54795698_54795714	0.0424282	GAGGUAG	ENSMUST00000005798.8|Snx6|ENSMUSG00000005656.8|sorting nexin 6
mm10_v2_chr2_-_73312701_73312724	0.0420156	GAGGUAG	ENSMUST00000058615.9|Cir1|ENSMUSG00000041777.11|corepressor interacting with RBPJ, 1
mm10_v2_chr6_-_97617536_97617597	0.0417819	GAGGUAG	ENSMUST00000113355.2|Frmd4b|ENSMUSG00000030064.10|FERM domain containing 4B
mm10_v2_chr6_+_4747306_4747372	0.0415466	GAGGUAG	ENSMUST00000175823.1|Peg10|ENSMUSG00000092035.2|paternally expressed 10 	ENSMUST00000176204.1|Peg10|ENSMUSG00000092035.2|paternally expressed 10 	ENSMUST00000166678.1|Peg10|ENSMUSG00000092035.2|paternally expressed 10
mm10_v2_chr13_-_8871696_8871749	0.0412814	GAGGUAG	ENSMUST00000054251.6|Wdr37|ENSMUSG00000021147.10|WD repeat domain 37 	ENSMUST00000176813.1|Wdr37|ENSMUSG00000021147.10|WD repeat domain 37
mm10_v2_chr5_+_76588663_76588742	0.0409633	GAGGUAG	ENSMUST00000121979.1|Cep135|ENSMUSG00000036403.9|centrosomal protein 135
mm10_v2_chr3_-_108911687_108911746	0.0407653	GAGGUAG	ENSMUST00000029480.8|Prpf38b|ENSMUSG00000027881.8|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
mm10_v2_chr11_+_54303798_54303844	0.0404035	GAGGUAG	ENSMUST00000093106.5|Acsl6|ENSMUSG00000020333.11|acyl-CoA synthetase long-chain family member 6
mm10_v2_chr16_-_38550173_38550258	0.040092	GAGGUAG	ENSMUST00000036210.6|Poglut1|ENSMUSG00000034064.8|protein O-glucosyltransferase 1
mm10_v2_chr2_+_129065934_129065994	0.0393553	GAGGUAG	ENSMUST00000035812.7|Ttl|ENSMUSG00000027394.7|tubulin tyrosine ligase
mm10_v2_chr9_-_103364970_103364996	0.0382657	GAGGUAG	ENSMUST00000116517.2|Cdv3|ENSMUSG00000032803.8|carnitine deficiency-associated gene expressed in ventricle 3
mm10_v2_chr1_+_163929765_163929809	0.037516	GAGGUAG	ENSMUST00000027876.4|Scyl3|ENSMUSG00000026584.8|SCY1-like 3 (S. cerevisiae) 	ENSMUST00000170359.1|Scyl3|ENSMUSG00000026584.8|SCY1-like 3 (S. cerevisiae)
mm10_v2_chr4_-_88722454_88722485	0.0363064	GAGGUAG	ENSMUST00000094993.2|Klhl9|ENSMUSG00000070923.4|kelch-like 9
mm10_v2_chr10_-_81167896_81167923	0.0359904	GAGGUAG	ENSMUST00000005064.7|Pias4|ENSMUSG00000004934.7|protein inhibitor of activated STAT 4
mm10_v2_chr13_-_23369156_23369217	0.0357998	GAGGUAG	ENSMUST00000125328.1|Zfp322a|ENSMUSG00000046351.4|zinc finger protein 322A 	ENSMUST00000145451.1|Zfp322a|ENSMUSG00000046351.4|zinc finger protein 322A 	ENSMUST00000050101.2|Zfp322a|ENSMUSG00000046351.4|zinc finger protein 322A
mm10_v2_chr11_-_94321957_94321988	0.0343054	GAGGUAG	ENSMUST00000166312.1|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000107821.2|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000021226.7|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000107820.1|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae)
mm10_v2_chr1_+_55131231_55131249	0.0342158	GAGGUAG	ENSMUST00000162364.1|Mob4|ENSMUSG00000025979.7|MOB family member 4, phocein 	ENSMUST00000159311.1|Mob4|ENSMUSG00000025979.7|MOB family member 4, phocein
mm10_v2_chr19_-_18631754_18631824	0.0341994	GAGGUAG	ENSMUST00000025631.6|Ostf1|ENSMUSG00000024725.6|osteoclast stimulating factor 1
mm10_v2_chr7_-_118584669_118584741	0.0340479	GAGGUAG	ENSMUST00000044195.4|Tmc7|ENSMUSG00000042246.4|transmembrane channel-like gene family 7
mm10_v2_chr7_+_97579868_97579901	0.0333229	GAGGUAG	ENSMUST00000042399.7|Rsf1|ENSMUSG00000035623.8|remodeling and spacing factor 1 	ENSMUST00000107153.1|Rsf1|ENSMUSG00000035623.8|remodeling and spacing factor 1
mm10_v2_chr15_+_85735754_85735808	0.0326535	GAGGUAG	ENSMUST00000109422.1|Ppara|ENSMUSG00000022383.7|peroxisome proliferator activated receptor alpha
mm10_v2_chr7_-_126082406_126082428	0.0324048	GAGGUAG	ENSMUST00000073935.5|Gsg1l|ENSMUSG00000046182.7|GSG1-like
mm10_v2_chr17_+_46383725_46383792	0.0322709	GAGGUAG	ENSMUST00000113481.1|Zfp318|ENSMUSG00000015597.10|zinc finger protein 318 	ENSMUST00000138127.1|Zfp318|ENSMUSG00000015597.10|zinc finger protein 318
mm10_v2_chr7_+_100159241_100159315	0.0318796	GAGGUAG	ENSMUST00000032967.3|Lipt2|ENSMUSG00000030725.3|lipoyl(octanoyl) transferase 2 (putative)
mm10_v2_chr9_+_106368594_106368640	0.0314962	GAGGUAG	ENSMUST00000172306.2|Dusp7|ENSMUSG00000053716.7|dual specificity phosphatase 7
mm10_v2_chr1_+_86303221_86303239	0.0311367	GAGGUAG	ENSMUST00000113306.2|B3gnt7|ENSMUSG00000079445.2|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
mm10_v2_chr4_+_106316187_106316243	0.0307686	GAGGUAG	ENSMUST00000165709.1|Usp24|ENSMUSG00000028514.9|ubiquitin specific peptidase 24 	ENSMUST00000106798.1|Usp24|ENSMUSG00000028514.9|ubiquitin specific peptidase 24 	ENSMUST00000094933.4|Usp24|ENSMUSG00000028514.9|ubiquitin specific peptidase 24
mm10_v2_chr2_-_33887862_33887946	0.0306219	GAGGUAG	ENSMUST00000041555.3|Mvb12b|ENSMUSG00000038740.3|multivesicular body subunit 12B
mm10_v2_chr6_-_119417479_119417530	0.030508	GAGGUAG	ENSMUST00000032272.6|Adipor2|ENSMUSG00000030168.7|adiponectin receptor 2
mm10_v2_chr3_-_53463234_53463306	0.0301249	GAGGUAG	ENSMUST00000056749.7|Nhlrc3|ENSMUSG00000042997.7|NHL repeat containing 3
mm10_v2_chr3_+_109340627_109340653	0.0298597	GAGGUAG	ENSMUST00000046864.7|Vav3|ENSMUSG00000033721.10|vav 3 oncogene
mm10_v2_chr19_-_59345746_59345853	0.0297412	GAGGUAG	ENSMUST00000099274.2|Pdzd8|ENSMUSG00000074746.2|PDZ domain containing 8
mm10_v2_chr16_-_50432340_50432409	0.029569	GAGGUAG	ENSMUST00000066037.6|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089399.4|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089404.3|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000114477.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000138166.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila)
mm10_v2_chr9_-_27030010_27030114	0.0286867	GAGGUAG	ENSMUST00000034470.9|Vps26b|ENSMUSG00000031988.9|vacuolar protein sorting 26 homolog B (yeast)
mm10_v2_chr3_+_97658212_97658339	0.0283833	GAGGUAG	ENSMUST00000045743.6|Prkab2|ENSMUSG00000038205.6|protein kinase, AMP-activated, beta 2 non-catalytic subunit
mm10_v2_chr10_+_95940663_95940703	0.0280588	GAGGUAG	ENSMUST00000053484.6|Eea1|ENSMUSG00000036499.8|early endosome antigen 1
mm10_v2_chr3_-_142881942_142882017	0.0279111	GAGGUAG	ENSMUST00000043812.8|Pkn2|ENSMUSG00000004591.10|protein kinase N2
mm10_v2_chr4_-_126468580_126468653	0.027358	GAGGUAG	ENSMUST00000097888.3|Ago1|ENSMUSG00000041530.10|argonaute RISC catalytic subunit 1
mm10_v2_chr3_+_102734496_102734530	0.0266883	GAGGUAG	ENSMUST00000029451.5|Tspan2|ENSMUSG00000027858.7|tetraspanin 2
mm10_v2_chr6_+_72347301_72347379	0.0260825	GAGGUAG	ENSMUST00000077783.3|0610030E20Rik|ENSMUSG00000058706.3|RIKEN cDNA 0610030E20 gene
mm10_v2_chr7_-_144939823_144939869	0.025835	GAGGUAG	ENSMUST00000093962.4|Ccnd1|ENSMUSG00000070348.4|cyclin D1
mm10_v2_chr6_+_119479668_119479795	0.0257459	GAGGUAG	ENSMUST00000032094.5|Fbxl14|ENSMUSG00000030019.5|F-box and leucine-rich repeat protein 14
mm10_v2_chr1_+_171917512_171917537	0.0253284	GAGGUAG	ENSMUST00000171330.1|Slamf6|ENSMUSG00000015314.5|SLAM family member 6
mm10_v2_chr2_-_167492826_167492891	0.0252173	GAGGUAG	ENSMUST00000109211.2|Spata2|ENSMUSG00000047030.9|spermatogenesis associated 2 	ENSMUST00000057627.9|Spata2|ENSMUSG00000047030.9|spermatogenesis associated 2
mm10_v2_chr9_-_40346290_40346337	0.0247658	GAGGUAG	ENSMUST00000121357.1|Gramd1b|ENSMUSG00000040111.8|GRAM domain containing 1B
mm10_v2_chr5_+_123343834_123343970	0.0242315	GAGGUAG	ENSMUST00000120593.1|Bcl7a|ENSMUSG00000029438.3|B cell CLL/lymphoma 7A
mm10_v2_chr11_+_97362396_97362551	0.0237448	GAGGUAG	ENSMUST00000045540.3|Socs7|ENSMUSG00000038485.5|suppressor of cytokine signaling 7
mm10_v2_chr7_-_80115294_80115392	0.0234269	GAGGUAG	ENSMUST00000107384.3|Idh2|ENSMUSG00000030541.10|isocitrate dehydrogenase 2 (NADP+), mitochondrial
mm10_v2_chr1_-_134955908_134955955	0.0232177	GAGGUAG	ENSMUST00000045665.6|Ppp1r12b|ENSMUSG00000073557.5|protein phosphatase 1, regulatory (inhibitor) subunit 12B 	ENSMUST00000086444.4|Ppp1r12b|ENSMUSG00000073557.5|protein phosphatase 1, regulatory (inhibitor) subunit 12B 	ENSMUST00000112163.1|Ppp1r12b|ENSMUSG00000073557.5|protein phosphatase 1, regulatory (inhibitor) subunit 12B
mm10_v2_chr12_-_81594958_81595020	0.0230233	GAGGUAG	ENSMUST00000002756.7|Med6|ENSMUSG00000002679.8|mediator of RNA polymerase II transcription, subunit 6 homolog (yeast) 	ENSMUST00000161598.1|Med6|ENSMUSG00000002679.8|mediator of RNA polymerase II transcription, subunit 6 homolog (yeast) 	ENSMUST00000161211.1|Med6|ENSMUSG00000002679.8|mediator of RNA polymerase II transcription, subunit 6 homolog (yeast)
mm10_v2_chr11_+_96365752_96365752	0.0223368	GAGGUAG	ENSMUST00000019117.2|Hoxb1|ENSMUSG00000018973.2|homeobox B1
mm10_v2_chr4_-_141723401_141723436	0.0218079	GAGGUAG	ENSMUST00000102484.4|Ddi2|ENSMUSG00000078515.3|DNA-damage inducible protein 2 	ENSMUST00000177592.1|Rsc1a1|ENSMUSG00000040715.11|regulatory solute carrier protein, family 1, member 1
mm10_v2_chr11_+_49846732_49846758	0.0212192	GAGGUAG	ENSMUST00000178543.1|Mapk9|ENSMUSG00000020366.12|mitogen-activated protein kinase 9 	ENSMUST00000164643.1|Mapk9|ENSMUSG00000020366.12|mitogen-activated protein kinase 9 	ENSMUST00000109179.2|Mapk9|ENSMUSG00000020366.12|mitogen-activated protein kinase 9 	ENSMUST00000020634.7|Mapk9|ENSMUSG00000020366.12|mitogen-activated protein kinase 9
mm10_v2_chr8_+_11312805_11312887	0.0210322	GAGGUAG	ENSMUST00000033899.7|Col4a2|ENSMUSG00000031503.7|collagen, type IV, alpha 2
mm10_v2_chr10_-_5922385_5922407	0.0206818	GAGGUAG	ENSMUST00000131996.1|Rgs17|ENSMUSG00000019775.11|regulator of G-protein signaling 17 	ENSMUST00000064225.7|Rgs17|ENSMUSG00000019775.11|regulator of G-protein signaling 17
mm10_v2_chr5_+_145167207_145167259	0.0205173	GAGGUAG	ENSMUST00000160629.1|Cpsf4|ENSMUSG00000029625.10|cleavage and polyadenylation specific factor 4 	ENSMUST00000070487.5|Cpsf4|ENSMUSG00000029625.10|cleavage and polyadenylation specific factor 4 	ENSMUST00000160422.1|Cpsf4|ENSMUSG00000029625.10|cleavage and polyadenylation specific factor 4 	ENSMUST00000162244.1|Cpsf4|ENSMUSG00000029625.10|cleavage and polyadenylation specific factor 4
mm10_v2_chr16_+_91729281_91729390	0.0195958	GAGGUAG	ENSMUST00000114001.1|Itsn1|ENSMUSG00000022957.13|intersectin 1 (SH3 domain protein 1A) 	ENSMUST00000113999.1|Itsn1|ENSMUSG00000022957.13|intersectin 1 (SH3 domain protein 1A) 	ENSMUST00000064797.5|Itsn1|ENSMUSG00000022957.13|intersectin 1 (SH3 domain protein 1A) 	ENSMUST00000114002.2|Itsn1|ENSMUSG00000022957.13|intersectin 1 (SH3 domain protein 1A) 	ENSMUST00000095909.3|Itsn1|ENSMUSG00000022957.13|intersectin 1 (SH3 domain protein 1A) 	ENSMUST00000056482.7|Itsn1|ENSMUSG00000022957.13|intersectin 1 (SH3 domain protein 1A) 	ENSMUST00000113996.1|Itsn1|ENSMUSG00000022957.13|intersectin 1 (SH3 domain protein 1A)
mm10_v2_chr6_-_38876163_38876234	0.0195706	GAGGUAG	ENSMUST00000161779.1|Hipk2|ENSMUSG00000061436.9|homeodomain interacting protein kinase 2
mm10_v2_chr10_-_116581478_116581511	0.0195428	GAGGUAG	ENSMUST00000105267.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000105265.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000167706.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000168036.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000169921.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000020374.5|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2
mm10_v2_chr17_-_46327990_46328023	0.0195084	GAGGUAG	ENSMUST00000167360.1|Abcc10|ENSMUSG00000032842.7|ATP-binding cassette, sub-family C (CFTR/MRP), member 10
mm10_v2_chr10_-_31609184_31609184	0.0181422	GAGGUAG	ENSMUST00000081989.6|Rnf217|ENSMUSG00000063760.8|ring finger protein 217
mm10_v2_chr2_-_153241402_153241426	0.017971	GAGGUAG	ENSMUST00000056924.7|Plagl2|ENSMUSG00000051413.11|pleiomorphic adenoma gene-like 2
mm10_v2_chr4_-_43562397_43562430	0.0177895	GAGGUAG	ENSMUST00000030187.7|Tln1|ENSMUSG00000028465.10|talin 1
mm10_v2_chr15_+_101174096_101174148	0.0169815	GAGGUAG	ENSMUST00000000544.9|Acvr1b|ENSMUSG00000000532.9|activin A receptor, type 1B
mm10_v2_chr12_+_110889231_110889305	0.0169435	GAGGUAG	ENSMUST00000169597.1|Tecpr2|ENSMUSG00000021275.9|tectonin beta-propeller repeat containing 2 	ENSMUST00000165978.1|Tecpr2|ENSMUSG00000021275.9|tectonin beta-propeller repeat containing 2
mm10_v2_chr9_-_57836706_57836805	0.0168363	GAGGUAG	ENSMUST00000164010.1|Arid3b|ENSMUSG00000004661.9|AT rich interactive domain 3B (BRIGHT-like) 	ENSMUST00000171444.1|Arid3b|ENSMUSG00000004661.9|AT rich interactive domain 3B (BRIGHT-like) 	ENSMUST00000098686.3|Arid3b|ENSMUSG00000004661.9|AT rich interactive domain 3B (BRIGHT-like)
mm10_v2_chr1_-_45503282_45503282	0.016407	GAGGUAG	ENSMUST00000086430.4|Col5a2|ENSMUSG00000026042.10|collagen, type V, alpha 2
mm10_v2_chr18_-_43438280_43438297	0.0161151	GAGGUAG	ENSMUST00000121805.1|Dpysl3|ENSMUSG00000024501.13|dihydropyrimidinase-like 3
mm10_v2_chr6_-_30958990_30958990	0.0160158	GAGGUAG	ENSMUST00000101589.3|Klf14|ENSMUSG00000073209.3|Kruppel-like factor 14
mm10_v2_chr16_-_36666067_36666086	0.0148727	GAGGUAG	ENSMUST00000089620.4|Cd86|ENSMUSG00000022901.7|CD86 antigen
mm10_v2_chr15_-_93275151_93275178	0.0146335	GAGGUAG	ENSMUST00000057896.4|Gxylt1|ENSMUSG00000036197.9|glucoside xylosyltransferase 1 	ENSMUST00000049484.6|Gxylt1|ENSMUSG00000036197.9|glucoside xylosyltransferase 1
mm10_v2_chr3_+_103058302_103058352	0.0143371	GAGGUAG	ENSMUST00000029445.6|Nras|ENSMUSG00000027852.8|neuroblastoma ras oncogene
mm10_v2_chr11_+_51059231_51059307	0.0137182	GAGGUAG	ENSMUST00000102766.3|Zfp354a|ENSMUSG00000020364.8|zinc finger protein 354A 	ENSMUST00000109122.1|Zfp354a|ENSMUSG00000020364.8|zinc finger protein 354A
mm10_v2_chr14_-_65262391_65262490	0.0137108	GAGGUAG	ENSMUST00000131309.1|Fzd3|ENSMUSG00000007989.6|frizzled homolog 3 (Drosophila)
mm10_v2_chr15_-_77928925_77929011	0.0135487	GAGGUAG	ENSMUST00000109748.2|Txn2|ENSMUSG00000005354.9|thioredoxin 2 	ENSMUST00000109747.2|Txn2|ENSMUSG00000005354.9|thioredoxin 2 	ENSMUST00000100486.5|Txn2|ENSMUSG00000005354.9|thioredoxin 2 	ENSMUST00000005487.5|Txn2|ENSMUSG00000005354.9|thioredoxin 2
mm10_v2_chr11_-_87074055_87074071	0.0132294	GAGGUAG	ENSMUST00000020804.7|Gdpd1|ENSMUSG00000061666.6|glycerophosphodiester phosphodiesterase domain containing 1
mm10_v2_chr4_+_123904832_123904851	0.0130698	GAGGUAG	ENSMUST00000030400.7|Mycbp|ENSMUSG00000028647.7|c-myc binding protein
mm10_v2_chr4_+_118409331_118409401	0.0126658	GAGGUAG	ENSMUST00000084319.4|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000106384.3|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000126089.1|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000073881.1|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000019229.8|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000144577.1|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)
mm10_v2_chr3_+_88142328_88142483	0.0122362	GAGGUAG	ENSMUST00000001455.6|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D 	ENSMUST00000119251.1|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D
mm10_v2_chr1_-_151428440_151428474	0.0119842	GAGGUAG	ENSMUST00000064771.5|Swt1|ENSMUSG00000052748.8|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
mm10_v2_chrX_+_36598199_36598214	0.0117807	GAGGUAG	ENSMUST00000073339.6|Pgrmc1|ENSMUSG00000006373.10|progesterone receptor membrane component 1
mm10_v2_chr12_+_85110833_85110866	0.0117401	GAGGUAG	ENSMUST00000053811.8|Dlst|ENSMUSG00000004789.9|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)
mm10_v2_chr14_+_47276910_47276936	0.0113842	GAGGUAG	ENSMUST00000065562.4|Socs4|ENSMUSG00000048379.8|suppressor of cytokine signaling 4
mm10_v2_chr13_+_54949388_54949481	0.00999122	GAGGUAG	ENSMUST00000026994.7|Unc5a|ENSMUSG00000025876.9|unc-5 homolog A (C. elegans) 	ENSMUST00000109994.2|Unc5a|ENSMUSG00000025876.9|unc-5 homolog A (C. elegans)
mm10_v2_chr6_-_86669136_86669164	0.00967352	GAGGUAG	ENSMUST00000001184.7|Mxd1|ENSMUSG00000001156.7|MAX dimerization protein 1
mm10_v2_chr5_-_102069905_102069940	0.00967344	GAGGUAG	ENSMUST00000053177.7|Wdfy3|ENSMUSG00000043940.8|WD repeat and FYVE domain containing 3 	ENSMUST00000174698.1|Wdfy3|ENSMUSG00000043940.8|WD repeat and FYVE domain containing 3
mm10_v2_chrX_-_143933204_143933311	0.00910708	GAGGUAG	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr14_+_17660956_17660963	0.00900342	GAGGUAG	ENSMUST00000022303.7|Thrb|ENSMUSG00000021779.10|thyroid hormone receptor beta 	ENSMUST00000091471.4|Thrb|ENSMUSG00000021779.10|thyroid hormone receptor beta
mm10_v2_chr1_-_75141531_75141544	0.00857394	GAGGUAG	ENSMUST00000168720.1|Cnppd1|ENSMUSG00000033159.8|cyclin Pas1/PHO80 domain containing 1
mm10_v2_chr3_+_98382438_98382520	0.00852432	GAGGUAG	ENSMUST00000056096.8|Zfp697|ENSMUSG00000050064.8|zinc finger protein 697
mm10_v2_chr19_+_56722372_56722372	0.00838911	GAGGUAG	ENSMUST00000038949.4|Adrb1|ENSMUSG00000035283.4|adrenergic receptor, beta 1
mm10_v2_chr2_-_92459709_92459794	0.00827266	GAGGUAG	ENSMUST00000136718.1|Slc35c1|ENSMUSG00000049922.8|solute carrier family 35, member C1 	ENSMUST00000067631.6|Slc35c1|ENSMUSG00000049922.8|solute carrier family 35, member C1
mm10_v2_chr14_-_30353468_30353535	0.0069873	GAGGUAG	ENSMUST00000112249.1|Cacna1d|ENSMUSG00000015968.10|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm10_v2_chr1_+_87755870_87756115	0.00697258	GAGGUAG	ENSMUST00000144047.1|Atg16l1|ENSMUSG00000026289.9|autophagy related 16-like 1 (S. cerevisiae) 	ENSMUST00000027512.6|Atg16l1|ENSMUSG00000026289.9|autophagy related 16-like 1 (S. cerevisiae) 	ENSMUST00000113186.1|Atg16l1|ENSMUSG00000026289.9|autophagy related 16-like 1 (S. cerevisiae) 	ENSMUST00000113190.2|Atg16l1|ENSMUSG00000026289.9|autophagy related 16-like 1 (S. cerevisiae)
mm10_v2_chr16_-_43979050_43979093	0.00666183	GAGGUAG	ENSMUST00000165648.1|Zdhhc23|ENSMUSG00000036304.7|zinc finger, DHHC domain containing 23 	ENSMUST00000036321.7|Zdhhc23|ENSMUSG00000036304.7|zinc finger, DHHC domain containing 23
mm10_v2_chr5_-_108132541_108132570	0.00654919	GAGGUAG	ENSMUST00000119437.1|Tmed5|ENSMUSG00000063406.5|transmembrane emp24 protein transport domain containing 5 	ENSMUST00000118036.1|Tmed5|ENSMUSG00000063406.5|transmembrane emp24 protein transport domain containing 5
mm10_v2_chrX_+_37126777_37126795	0.00629826	GAGGUAG	ENSMUST00000016553.4|Nkap|ENSMUSG00000016409.4|NFKB activating protein
mm10_v2_chr6_-_39725448_39725478	0.00610327	GAGGUAG	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr16_+_35983307_35983395	0.00549634	GAGGUAG	ENSMUST00000004054.6|Kpna1|ENSMUSG00000022905.6|karyopherin (importin) alpha 1
mm10_v2_chr18_-_61726302_61726336	0.00502543	GAGGUAG	ENSMUST00000062991.7|Grpel2|ENSMUSG00000024580.7|GrpE-like 2, mitochondrial
mm10_v2_chr13_-_103764502_103764505	0.00493826	GAGGUAG	ENSMUST00000074616.5|Srek1|ENSMUSG00000032621.7|splicing regulatory glutamine/lysine-rich protein 1
mm10_v2_chr13_+_104817171_104817223	0.00486702	GAGGUAG	ENSMUST00000022230.8|Srek1ip1|ENSMUSG00000021716.8|splicing regulatory glutamine/lysine-rich protein 1interacting protein 1
mm10_v2_chr3_+_94837533_94837567	0.00430675	GAGGUAG	ENSMUST00000107270.2|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain
mm10_v2_chr6_-_125380793_125380793	0.00426311	GAGGUAG	ENSMUST00000042647.6|Plekhg6|ENSMUSG00000038167.6|pleckstrin homology domain containing, family G (with RhoGef domain) member 6
mm10_v2_chr19_+_30030439_30030528	0.00390571	GAGGUAG	ENSMUST00000025739.7|Uhrf2|ENSMUSG00000024817.7|ubiquitin-like, containing PHD and RING finger domains 2
mm10_v2_chr16_+_37868383_37868481	0.00389398	GAGGUAG	ENSMUST00000078717.6|Lrrc58|ENSMUSG00000034158.9|leucine rich repeat containing 58
mm10_v2_chr7_-_127708738_127708791	0.00382434	GAGGUAG	ENSMUST00000106282.1|Bcl7c|ENSMUSG00000030814.11|B cell CLL/lymphoma 7C
mm10_v2_chr19_+_10389068_10389090	0.00377253	GAGGUAG	ENSMUST00000169121.1|Syt7|ENSMUSG00000024743.8|synaptotagmin VII 	ENSMUST00000076968.3|Syt7|ENSMUSG00000024743.8|synaptotagmin VII 	ENSMUST00000073899.4|Syt7|ENSMUSG00000024743.8|synaptotagmin VII
mm10_v2_chr9_-_57262591_57262609	0.00330897	GAGGUAG	ENSMUST00000034846.5|1700017B05Rik|ENSMUSG00000032300.6|RIKEN cDNA 1700017B05 gene
mm10_v2_chr2_+_119547697_119547762	0.00271354	GAGGUAG	ENSMUST00000014221.6|Chp1|ENSMUSG00000014077.7|calcineurin-like EF hand protein 1 	ENSMUST00000119172.1|Chp1|ENSMUSG00000014077.7|calcineurin-like EF hand protein 1
mm10_v2_chr2_+_152081529_152081624	0.00257207	GAGGUAG	ENSMUST00000064061.3|Scrt2|ENSMUSG00000060257.2|scratch homolog 2, zinc finger protein (Drosophila)
mm10_v2_chr17_-_30576241_30576312	0.0010691	GAGGUAG	ENSMUST00000079924.5|Btbd9|ENSMUSG00000062202.7|BTB (POZ) domain containing 9 	ENSMUST00000168787.1|Btbd9|ENSMUSG00000062202.7|BTB (POZ) domain containing 9
mm10_v2_chr2_-_152415044_152415044	0.00100271	GAGGUAG	ENSMUST00000099207.3|Zcchc3|ENSMUSG00000074682.3|zinc finger, CCHC domain containing 3
mm10_v2_chr3_-_9833653_9833679	0.00095899	GAGGUAG	ENSMUST00000161949.1|Pag1|ENSMUSG00000027508.9|phosphoprotein associated with glycosphingolipid microdomains 1
