mm10_v2_chr10_+_4611971_4612021	0.731771	GCUACAU	ENSMUST00000105590.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha) 	ENSMUST00000067086.7|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha)
mm10_v2_chr8_-_31918203_31918368	0.341586	GCUACAU	ENSMUST00000073884.4|Nrg1|ENSMUSG00000062991.6|neuregulin 1
mm10_v2_chr13_+_46418266_46418316	0.294588	GCUACAU	ENSMUST00000037923.3|Rbm24|ENSMUSG00000038132.5|RNA binding motif protein 24
mm10_v2_chr6_+_141249161_141249269	0.27469	GCUACAU	ENSMUST00000043259.7|Pde3a|ENSMUSG00000041741.8|phosphodiesterase 3A, cGMP inhibited
mm10_v2_chr3_+_88532314_88532396	0.224346	GCUACAU	ENSMUST00000172699.1|Mex3a|ENSMUSG00000074480.4|mex3 homolog A (C. elegans)
mm10_v2_chr4_-_91372028_91372069	0.222	GCUACAU	ENSMUST00000107110.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000008633.8|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107118.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr5_+_121397936_121398004	0.207363	GCUACAU	ENSMUST00000042163.8|Naa25|ENSMUSG00000042719.11|N(alpha)-acetyltransferase 25, NatB auxiliary subunit
mm10_v2_chr2_-_5714490_5714538	0.187612	GCUACAU	ENSMUST00000044009.7|Camk1d|ENSMUSG00000039145.10|calcium/calmodulin-dependent protein kinase ID
mm10_v2_chr9_+_72532214_72532271	0.17904	GCUACAU	ENSMUST00000163401.2|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7 	ENSMUST00000093820.3|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7
mm10_v2_chr12_+_85473883_85473896	0.16562	GCUACAU	ENSMUST00000021674.6|Fos|ENSMUSG00000021250.7|FBJ osteosarcoma oncogene
mm10_v2_chr12_+_86678685_86678796	0.16287	GCUACAU	ENSMUST00000021681.3|Vash1|ENSMUSG00000021256.5|vasohibin 1
mm10_v2_chr18_-_77565050_77565162	0.161127	GCUACAU	ENSMUST00000182153.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000182146.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000026494.7|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000182024.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165
mm10_v2_chr12_-_108003594_108003613	0.157794	GCUACAU	ENSMUST00000066060.4|Bcl11b|ENSMUSG00000048251.9|B cell leukemia/lymphoma 11B
mm10_v2_chr6_-_124888192_124888221	0.156741	GCUACAU	ENSMUST00000024044.6|Cd4|ENSMUSG00000023274.8|CD4 antigen
mm10_v2_chr4_+_136172367_136172395	0.148317	GCUACAU	ENSMUST00000061721.5|E2f2|ENSMUSG00000018983.9|E2F transcription factor 2
mm10_v2_chr15_-_103340085_103340100	0.145897	GCUACAU	ENSMUST00000168828.1|Zfp385a|ENSMUSG00000000552.9|zinc finger protein 385A
mm10_v2_chr2_+_33216051_33216084	0.130204	GCUACAU	ENSMUST00000004208.5|Angptl2|ENSMUSG00000004105.6|angiopoietin-like 2
mm10_v2_chrX_+_151198078_151198140	0.126788	GCUACAU	ENSMUST00000184730.1|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3 	ENSMUST00000184392.1|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3 	ENSMUST00000096285.4|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3
mm10_v2_chr6_+_14901344_14901364	0.121545	GCUACAU	ENSMUST00000115477.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr3_+_14886426_14886426	0.111902	GCUACAU	ENSMUST00000029078.7|Car2|ENSMUSG00000027562.7|carbonic anhydrase 2
mm10_v2_chr11_+_32347800_32347865	0.11058	GCUACAU	ENSMUST00000038753.5|Sh3pxd2b|ENSMUSG00000040711.7|SH3 and PX domains 2B
mm10_v2_chr14_-_67072465_67072476	0.109373	GCUACAU	ENSMUST00000089230.5|Ppp2r2a|ENSMUSG00000022052.8|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform
mm10_v2_chr7_+_126272589_126272619	0.10933	GCUACAU	ENSMUST00000056028.9|Sbk1|ENSMUSG00000042978.9|SH3-binding kinase 1
mm10_v2_chr18_+_69345721_69345811	0.106889	GCUACAU	ENSMUST00000078486.6|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114982.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr8_-_110805863_110805952	0.10669	GCUACAU	ENSMUST00000150680.1|Il34|ENSMUSG00000031750.9|interleukin 34 	ENSMUST00000076846.4|Il34|ENSMUSG00000031750.9|interleukin 34
mm10_v2_chr19_+_60755947_60755987	0.10667	GCUACAU	ENSMUST00000088237.4|Nanos1|ENSMUSG00000072437.3|nanos homolog 1 (Drosophila)
mm10_v2_chr5_+_105876532_105876585	0.106394	GCUACAU	ENSMUST00000150440.1|Zfp326|ENSMUSG00000029290.6|zinc finger protein 326 	ENSMUST00000031227.4|Zfp326|ENSMUSG00000029290.6|zinc finger protein 326
mm10_v2_chrX_-_142966709_142966734	0.106129	GCUACAU	ENSMUST00000041317.2|Ammecr1|ENSMUSG00000042225.3|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm10_v2_chr5_+_75574916_75575001	0.103727	GCUACAU	ENSMUST00000144270.1|Kit|ENSMUSG00000005672.6|kit oncogene 	ENSMUST00000005815.6|Kit|ENSMUSG00000005672.6|kit oncogene
mm10_v2_chr2_+_102658640_102658669	0.102153	GCUACAU	ENSMUST00000080210.3|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr14_+_111675113_111675119	0.100796	GCUACAU	ENSMUST00000042767.7|Slitrk5|ENSMUSG00000033214.9|SLIT and NTRK-like family, member 5
mm10_v2_chr2_+_124610573_124610613	0.0911796	GCUACAU	ENSMUST00000103239.3|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D 	ENSMUST00000103240.2|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm10_v2_chrX_+_68678541_68678554	0.0886536	GCUACAU	ENSMUST00000088546.5|Fmr1|ENSMUSG00000000838.11|fragile X mental retardation syndrome 1
mm10_v2_chr6_-_126166726_126166761	0.087777	GCUACAU	ENSMUST00000112244.2|Ntf3|ENSMUSG00000049107.7|neurotrophin 3 	ENSMUST00000050484.7|Ntf3|ENSMUSG00000049107.7|neurotrophin 3
mm10_v2_chr4_-_56990332_56990396	0.0872117	GCUACAU	ENSMUST00000053681.5|Frrs1l|ENSMUSG00000045589.7|ferric-chelate reductase 1 like
mm10_v2_chr3_+_65528404_65528431	0.0835721	GCUACAU	ENSMUST00000047906.3|Tiparp|ENSMUSG00000034640.3|TCDD-inducible poly(ADP-ribose) polymerase
mm10_v2_chr4_-_6990774_6990823	0.0822098	GCUACAU	ENSMUST00000039987.3|Tox|ENSMUSG00000041272.5|thymocyte selection-associated high mobility group box
mm10_v2_chr9_+_74953053_74953091	0.0817829	GCUACAU	ENSMUST00000170846.1|Fam214a|ENSMUSG00000034858.9|family with sequence similarity 214, member A
mm10_v2_chr7_+_16309577_16309641	0.0809648	GCUACAU	ENSMUST00000002152.6|Bbc3|ENSMUSG00000002083.6|BCL2 binding component 3
mm10_v2_chr9_-_72111827_72111895	0.0807933	GCUACAU	ENSMUST00000183404.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000184783.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr3_+_101377074_101377158	0.078421	GCUACAU	ENSMUST00000043983.5|Igsf3|ENSMUSG00000042035.6|immunoglobulin superfamily, member 3
mm10_v2_chr17_+_24414640_24414691	0.0776821	GCUACAU	ENSMUST00000115371.1|Rnps1|ENSMUSG00000034681.10|ribonucleic acid binding protein S1 	ENSMUST00000088512.5|Rnps1|ENSMUSG00000034681.10|ribonucleic acid binding protein S1 	ENSMUST00000163717.1|Rnps1|ENSMUSG00000034681.10|ribonucleic acid binding protein S1
mm10_v2_chr8_+_46739745_46739791	0.0748571	GCUACAU	ENSMUST00000034041.7|Irf2|ENSMUSG00000031627.7|interferon regulatory factor 2
mm10_v2_chr2_+_153741274_153741294	0.074429	GCUACAU	ENSMUST00000028981.8|Mapre1|ENSMUSG00000027479.8|microtubule-associated protein, RP/EB family, member 1
mm10_v2_chr18_+_35598607_35598653	0.0729754	GCUACAU	ENSMUST00000041314.8|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115737.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115736.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115735.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2
mm10_v2_chr12_+_29528382_29528468	0.072592	GCUACAU	ENSMUST00000049784.9|Myt1l|ENSMUSG00000061911.8|myelin transcription factor 1-like
mm10_v2_chr10_-_62880014_62880014	0.0722056	GCUACAU	ENSMUST00000050826.7|Tet1|ENSMUSG00000047146.9|tet methylcytosine dioxygenase 1
mm10_v2_chr10_-_59951753_59951775	0.0710699	GCUACAU	ENSMUST00000020308.3|Ddit4|ENSMUSG00000020108.3|DNA-damage-inducible transcript 4
mm10_v2_chr10_-_37138863_37138937	0.0667569	GCUACAU	ENSMUST00000092584.5|Marcks|ENSMUSG00000069662.5|myristoylated alanine rich protein kinase C substrate
mm10_v2_chr4_-_129189512_129189594	0.0666157	GCUACAU	ENSMUST00000117965.1|S100pbp|ENSMUSG00000040928.9|S100P binding protein 	ENSMUST00000106061.2|S100pbp|ENSMUSG00000040928.9|S100P binding protein 	ENSMUST00000072431.6|S100pbp|ENSMUSG00000040928.9|S100P binding protein
mm10_v2_chr2_-_118549668_118549687	0.0611528	GCUACAU	ENSMUST00000090219.6|Bmf|ENSMUSG00000040093.9|BCL2 modifying factor
mm10_v2_chr7_-_132813799_132813905	0.0611305	GCUACAU	ENSMUST00000097998.2|Fam53b|ENSMUSG00000030956.9|family with sequence similarity 53, member B
mm10_v2_chr3_-_103791537_103791563	0.06113	GCUACAU	ENSMUST00000118317.1|Hipk1|ENSMUSG00000008730.11|homeodomain interacting protein kinase 1
mm10_v2_chr1_-_134079114_134079120	0.0589825	GCUACAU	ENSMUST00000020692.6|Btg2|ENSMUSG00000020423.6|B cell translocation gene 2, anti-proliferative
mm10_v2_chr10_+_128377086_128377155	0.0581853	GCUACAU	ENSMUST00000014642.3|Ankrd52|ENSMUSG00000014498.3|ankyrin repeat domain 52
mm10_v2_chr10_+_40349265_40349387	0.0561282	GCUACAU	ENSMUST00000044672.4|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19 	ENSMUST00000095743.2|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19
mm10_v2_chr10_+_80148263_80148279	0.0558997	GCUACAU	ENSMUST00000099492.3|Midn|ENSMUSG00000035621.7|midnolin 	ENSMUST00000042057.5|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr13_+_119428888_119428960	0.0551818	GCUACAU	ENSMUST00000026520.7|Paip1|ENSMUSG00000025451.9|polyadenylate binding protein-interacting protein 1
mm10_v2_chr15_-_79742518_79742562	0.0506326	GCUACAU	ENSMUST00000089311.4|Sun2|ENSMUSG00000042524.7|Sad1 and UNC84 domain containing 2 	ENSMUST00000046259.7|Sun2|ENSMUSG00000042524.7|Sad1 and UNC84 domain containing 2
mm10_v2_chr8_+_11758329_11758375	0.0502121	GCUACAU	ENSMUST00000074856.6|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7) 	ENSMUST00000098938.2|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7)
mm10_v2_chr8_-_80739497_80739497	0.0490667	GCUACAU	ENSMUST00000043359.8|Smarca5|ENSMUSG00000031715.8|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
mm10_v2_chr10_-_128645965_128645991	0.0484797	GCUACAU	ENSMUST00000133342.1|Ikzf4|ENSMUSG00000002578.9|IKAROS family zinc finger 4
mm10_v2_chr3_-_119783262_119783388	0.0473276	GCUACAU	ENSMUST00000029780.7|Ptbp2|ENSMUSG00000028134.7|polypyrimidine tract binding protein 2
mm10_v2_chr13_-_54766553_54766595	0.0463229	GCUACAU	ENSMUST00000036825.7|Sncb|ENSMUSG00000034891.7|synuclein, beta
mm10_v2_chr7_-_73541738_73541758	0.0451915	GCUACAU	ENSMUST00000169922.2|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr19_+_36554661_36554688	0.0449595	GCUACAU	ENSMUST00000169036.2|Hectd2|ENSMUSG00000041180.7|HECT domain containing 2 	ENSMUST00000047247.5|Hectd2|ENSMUSG00000041180.7|HECT domain containing 2
mm10_v2_chr2_-_105904484_105904564	0.0449354	GCUACAU	ENSMUST00000122965.1|Elp4|ENSMUSG00000027167.5|elongation protein 4 homolog (S. cerevisiae)
mm10_v2_chr7_+_110018301_110018425	0.04315	GCUACAU	ENSMUST00000084731.3|Ipo7|ENSMUSG00000066232.3|importin 7
mm10_v2_chr12_-_46818749_46818788	0.0428048	GCUACAU	ENSMUST00000021438.6|Nova1|ENSMUSG00000021047.6|neuro-oncological ventral antigen 1
mm10_v2_chr13_+_94057757_94057838	0.040845	GCUACAU	ENSMUST00000054274.1|Lhfpl2|ENSMUSG00000045312.5|lipoma HMGIC fusion partner-like 2
mm10_v2_chr2_+_122028544_122028563	0.0400904	GCUACAU	ENSMUST00000028668.7|Eif3j1|ENSMUSG00000027236.8|eukaryotic translation initiation factor 3, subunit J1
mm10_v2_chr11_+_72607221_72607307	0.039184	GCUACAU	ENSMUST00000021148.6|Ube2g1|ENSMUSG00000020794.7|ubiquitin-conjugating enzyme E2G 1 	ENSMUST00000138247.1|Ube2g1|ENSMUSG00000020794.7|ubiquitin-conjugating enzyme E2G 1
mm10_v2_chr6_-_116193426_116193501	0.0361617	GCUACAU	ENSMUST00000088896.3|Tmcc1|ENSMUSG00000030126.11|transmembrane and coiled coil domains 1
mm10_v2_chr2_-_25580099_25580099	0.0361097	GCUACAU	ENSMUST00000114217.1|Gm996|ENSMUSG00000029419.7|predicted gene 996
mm10_v2_chr13_-_111490111_111490139	0.0355123	GCUACAU	ENSMUST00000047627.7|Gpbp1|ENSMUSG00000032745.11|GC-rich promoter binding protein 1
mm10_v2_chr2_+_75659253_75659318	0.0348419	GCUACAU	ENSMUST00000111964.1|Hnrnpa3|ENSMUSG00000059005.7|heterogeneous nuclear ribonucleoprotein A3 	ENSMUST00000111962.1|Hnrnpa3|ENSMUSG00000059005.7|heterogeneous nuclear ribonucleoprotein A3 	ENSMUST00000111961.1|Hnrnpa3|ENSMUSG00000059005.7|heterogeneous nuclear ribonucleoprotein A3 	ENSMUST00000164947.2|Hnrnpa3|ENSMUSG00000059005.7|heterogeneous nuclear ribonucleoprotein A3 	ENSMUST00000090792.4|Hnrnpa3|ENSMUSG00000059005.7|heterogeneous nuclear ribonucleoprotein A3
mm10_v2_chr4_+_33031371_33031524	0.0332623	GCUACAU	ENSMUST00000124992.1|Ube2j1|ENSMUSG00000028277.7|ubiquitin-conjugating enzyme E2J 1
mm10_v2_chr9_+_32696005_32696121	0.0330027	GCUACAU	ENSMUST00000034534.6|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000050797.7|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000184887.1|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain
mm10_v2_chr4_-_9643638_9643717	0.0320236	GCUACAU	ENSMUST00000108333.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000108334.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000108335.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000152526.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000103004.3|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase
mm10_v2_chr12_-_55821157_55821195	0.0318978	GCUACAU	ENSMUST00000110687.1|Ralgapa1|ENSMUSG00000021027.9|Ral GTPase activating protein, alpha subunit 1 	ENSMUST00000085385.5|Ralgapa1|ENSMUSG00000021027.9|Ral GTPase activating protein, alpha subunit 1
mm10_v2_chr1_-_180813591_180813632	0.0297501	GCUACAU	ENSMUST00000162118.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000159685.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000161308.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A
mm10_v2_chr8_-_47352348_47352367	0.0286033	GCUACAU	ENSMUST00000110367.2|Stox2|ENSMUSG00000038143.8|storkhead box 2
mm10_v2_chr17_-_42876417_42876431	0.0281152	GCUACAU	ENSMUST00000024709.7|Cd2ap|ENSMUSG00000061665.6|CD2-associated protein
mm10_v2_chr11_+_77686155_77686179	0.0278653	GCUACAU	ENSMUST00000100802.4|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2 	ENSMUST00000181023.1|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2
mm10_v2_chr8_-_85555261_85555315	0.0273055	GCUACAU	ENSMUST00000034138.5|Dnaja2|ENSMUSG00000031701.5|DnaJ (Hsp40) homolog, subfamily A, member 2
mm10_v2_chr11_-_42182924_42182935	0.0273048	GCUACAU	ENSMUST00000020707.5|Gabra1|ENSMUSG00000010803.6|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1 	ENSMUST00000132971.1|Gabra1|ENSMUSG00000010803.6|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
mm10_v2_chr7_-_38019505_38019552	0.0268193	GCUACAU	ENSMUST00000085513.4|Uri1|ENSMUSG00000030421.8|URI1, prefoldin-like chaperone
mm10_v2_chr18_-_35215008_35215033	0.0265599	GCUACAU	ENSMUST00000091636.3|Lrrtm2|ENSMUSG00000071862.2|leucine rich repeat transmembrane neuronal 2
mm10_v2_chr6_+_8209216_8209263	0.0257651	GCUACAU	ENSMUST00000040017.7|Mios|ENSMUSG00000042447.7|missing oocyte, meiosis regulator, homolog (Drosophila)
mm10_v2_chr14_-_69284982_69285112	0.0254861	GCUACAU	ENSMUST00000183882.1|Slc25a37|ENSMUSG00000034248.7|solute carrier family 25, member 37 	ENSMUST00000037064.4|Slc25a37|ENSMUSG00000034248.7|solute carrier family 25, member 37
mm10_v2_chr7_+_66109474_66109515	0.0254435	GCUACAU	ENSMUST00000036372.6|Chsy1|ENSMUSG00000032640.9|chondroitin sulfate synthase 1
mm10_v2_chr10_-_85127977_85128035	0.0253813	GCUACAU	ENSMUST00000050813.2|Mterfd3|ENSMUSG00000049038.2|MTERF domain containing 3
mm10_v2_chr11_-_74724670_74724702	0.0249755	GCUACAU	ENSMUST00000021091.8|Pafah1b1|ENSMUSG00000020745.9|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
mm10_v2_chr10_-_5922385_5922407	0.0242295	GCUACAU	ENSMUST00000131996.1|Rgs17|ENSMUSG00000019775.11|regulator of G-protein signaling 17 	ENSMUST00000064225.7|Rgs17|ENSMUSG00000019775.11|regulator of G-protein signaling 17
mm10_v2_chr8_+_92357787_92357801	0.0234476	GCUACAU	ENSMUST00000034184.10|Irx5|ENSMUSG00000031737.10|Iroquois related homeobox 5 (Drosophila)
mm10_v2_chr13_+_45389734_45389750	0.0231842	GCUACAU	ENSMUST00000038275.9|Mylip|ENSMUSG00000038175.9|myosin regulatory light chain interacting protein
mm10_v2_chr18_+_84088077_84088178	0.0231151	GCUACAU	ENSMUST00000060223.2|Zadh2|ENSMUSG00000049090.2|zinc binding alcohol dehydrogenase, domain containing 2
mm10_v2_chr2_-_45113255_45113279	0.0223519	GCUACAU	ENSMUST00000068415.4|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2 	ENSMUST00000127520.1|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr17_+_88440711_88440741	0.0214285	GCUACAU	ENSMUST00000112238.2|Foxn2|ENSMUSG00000034998.12|forkhead box N2 	ENSMUST00000155640.1|Foxn2|ENSMUSG00000034998.12|forkhead box N2
mm10_v2_chr9_-_107609215_107609246	0.0207826	GCUACAU	ENSMUST00000102532.3|Sema3b|ENSMUSG00000057969.9|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
mm10_v2_chr11_+_104608000_104608012	0.0196454	GCUACAU	ENSMUST00000021028.4|Itgb3|ENSMUSG00000020689.4|integrin beta 3
mm10_v2_chr6_-_99266494_99266540	0.0190629	GCUACAU	ENSMUST00000113326.2|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr4_+_115784799_115784837	0.0189347	GCUACAU	ENSMUST00000177280.1|Atpaf1|ENSMUSG00000028710.10|ATP synthase mitochondrial F1 complex assembly factor 1 	ENSMUST00000176047.1|Atpaf1|ENSMUSG00000028710.10|ATP synthase mitochondrial F1 complex assembly factor 1 	ENSMUST00000030478.6|Atpaf1|ENSMUSG00000028710.10|ATP synthase mitochondrial F1 complex assembly factor 1
mm10_v2_chr5_-_138155694_138155744	0.0184087	GCUACAU	ENSMUST00000132318.1|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113 	ENSMUST00000049393.8|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113
mm10_v2_chr14_+_45351473_45351473	0.0179636	GCUACAU	ENSMUST00000111835.2|Styx|ENSMUSG00000053205.8|serine/threonine/tyrosine interaction protein
mm10_v2_chr6_-_148896150_148896237	0.0173198	GCUACAU	ENSMUST00000072324.5|Caprin2|ENSMUSG00000030309.10|caprin family member 2 	ENSMUST00000111569.2|Caprin2|ENSMUSG00000030309.10|caprin family member 2
mm10_v2_chr9_-_52679429_52679429	0.0172299	GCUACAU	ENSMUST00000098768.2|AI593442|ENSMUSG00000078307.2|expressed sequence AI593442
mm10_v2_chr9_-_103364970_103364996	0.0161449	GCUACAU	ENSMUST00000116517.2|Cdv3|ENSMUSG00000032803.8|carnitine deficiency-associated gene expressed in ventricle 3
mm10_v2_chr7_-_127824469_127824580	0.0158597	GCUACAU	ENSMUST00000106267.3|Stx1b|ENSMUSG00000030806.5|syntaxin 1B
mm10_v2_chrX_-_108834303_108834381	0.0156843	GCUACAU	ENSMUST00000101283.3|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3 	ENSMUST00000150434.1|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3
mm10_v2_chr1_+_153652943_153653025	0.0152898	GCUACAU	ENSMUST00000041776.5|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr5_-_135934590_135934613	0.0151695	GCUACAU	ENSMUST00000055808.5|Ywhag|ENSMUSG00000051391.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm10_v2_chr4_-_41314877_41314889	0.0150654	GCUACAU	ENSMUST00000030145.8|Dcaf12|ENSMUSG00000028436.8|DDB1 and CUL4 associated factor 12
mm10_v2_chr4_-_58912678_58912776	0.0142133	GCUACAU	ENSMUST00000144512.1|AI314180|ENSMUSG00000050812.12|expressed sequence AI314180 	ENSMUST00000102889.3|AI314180|ENSMUSG00000050812.12|expressed sequence AI314180 	ENSMUST00000055822.8|AI314180|ENSMUSG00000050812.12|expressed sequence AI314180
mm10_v2_chr10_-_116581478_116581511	0.0141071	GCUACAU	ENSMUST00000105267.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000105265.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000167706.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000168036.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000169921.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000020374.5|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2
mm10_v2_chr7_-_83884289_83884341	0.0136559	GCUACAU	ENSMUST00000094216.3|Mesdc1|ENSMUSG00000070462.3|mesoderm development candidate 1
mm10_v2_chr4_-_151861762_151861876	0.0132549	GCUACAU	ENSMUST00000097774.2|Camta1|ENSMUSG00000014592.13|calmodulin binding transcription activator 1
mm10_v2_chr5_+_86804214_86804276	0.0124542	GCUACAU	ENSMUST00000119339.1|Ythdc1|ENSMUSG00000035851.8|YTH domain containing 1 	ENSMUST00000120498.1|Ythdc1|ENSMUSG00000035851.8|YTH domain containing 1
mm10_v2_chr4_+_83525540_83525616	0.0123519	GCUACAU	ENSMUST00000053414.6|Ccdc171|ENSMUSG00000052407.10|coiled-coil domain containing 171 	ENSMUST00000126429.1|Ccdc171|ENSMUSG00000052407.10|coiled-coil domain containing 171
mm10_v2_chr1_+_138963709_138963808	0.0121579	GCUACAU	ENSMUST00000168527.1|Dennd1b|ENSMUSG00000056268.9|DENN/MADD domain containing 1B
mm10_v2_chr19_-_53390559_53390581	0.0115962	GCUACAU	ENSMUST00000025997.5|Smndc1|ENSMUSG00000025024.6|survival motor neuron domain containing 1
mm10_v2_chr16_-_8792302_8792326	0.0103054	GCUACAU	ENSMUST00000160405.1|Usp7|ENSMUSG00000022710.11|ubiquitin specific peptidase 7
mm10_v2_chr11_+_17159263_17159357	0.00990662	GCUACAU	ENSMUST00000102880.4|Ppp3r1|ENSMUSG00000033953.10|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)
mm10_v2_chr4_-_153482768_153482811	0.0098364	GCUACAU	ENSMUST00000105646.2|Ajap1|ENSMUSG00000039546.9|adherens junction associated protein 1
mm10_v2_chr1_-_64121456_64121491	0.00937482	GCUACAU	ENSMUST00000142009.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous) 	ENSMUST00000114086.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr4_+_128654686_128654738	0.00920057	GCUACAU	ENSMUST00000030588.6|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila) 	ENSMUST00000136377.1|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila)
mm10_v2_chr4_-_133753611_133753666	0.00883415	GCUACAU	ENSMUST00000145664.2|Arid1a|ENSMUSG00000007880.10|AT rich interactive domain 1A (SWI-like) 	ENSMUST00000105897.3|Arid1a|ENSMUSG00000007880.10|AT rich interactive domain 1A (SWI-like)
mm10_v2_chrX_+_71962971_71963013	0.0087198	GCUACAU	ENSMUST00000048790.6|Prrg3|ENSMUSG00000033361.7|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
mm10_v2_chr2_+_75832168_75832194	0.00839924	GCUACAU	ENSMUST00000047232.7|Agps|ENSMUSG00000042410.9|alkylglycerone phosphate synthase 	ENSMUST00000111952.2|Agps|ENSMUSG00000042410.9|alkylglycerone phosphate synthase
mm10_v2_chr7_-_144470714_144470770	0.00804999	GCUACAU	ENSMUST00000033407.6|Cttn|ENSMUSG00000031078.9|cortactin
mm10_v2_chr14_+_56887795_56887795	0.00798349	GCUACAU	ENSMUST00000022511.8|Zmym2|ENSMUSG00000021945.8|zinc finger, MYM-type 2
mm10_v2_chr18_-_73703739_73703806	0.00768727	GCUACAU	ENSMUST00000025393.7|Smad4|ENSMUSG00000024515.7|SMAD family member 4
mm10_v2_chr5_+_110135823_110135887	0.00739387	GCUACAU	ENSMUST00000112519.2|Chfr|ENSMUSG00000014668.9|checkpoint with forkhead and ring finger domains 	ENSMUST00000014812.8|Chfr|ENSMUSG00000014668.9|checkpoint with forkhead and ring finger domains
mm10_v2_chr7_+_120677579_120677630	0.00708712	GCUACAU	ENSMUST00000060175.6|BC030336|ENSMUSG00000046096.6|cDNA sequence BC030336
mm10_v2_chr6_+_86849488_86849628	0.00698977	GCUACAU	ENSMUST00000089519.6|Aak1|ENSMUSG00000057230.7|AP2 associated kinase 1 	ENSMUST00000113668.1|Aak1|ENSMUSG00000057230.7|AP2 associated kinase 1
mm10_v2_chr14_+_54360826_54360851	0.0069738	GCUACAU	ENSMUST00000000985.5|Oxa1l|ENSMUSG00000000959.5|oxidase assembly 1-like
mm10_v2_chr3_+_94837533_94837567	0.00686359	GCUACAU	ENSMUST00000107270.2|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain
mm10_v2_chr10_+_56377300_56377338	0.00679851	GCUACAU	ENSMUST00000068581.7|Gja1|ENSMUSG00000050953.9|gap junction protein, alpha 1
mm10_v2_chr5_-_20951769_20951824	0.00603181	GCUACAU	ENSMUST00000036489.5|Rsbn1l|ENSMUSG00000039968.5|round spermatid basic protein 1-like
mm10_v2_chr13_-_48968004_48968029	0.00546527	GCUACAU	ENSMUST00000060805.6|Fam120a|ENSMUSG00000038014.7|family with sequence similarity 120, member A
mm10_v2_chr11_-_46166397_46166508	0.00522178	GCUACAU	ENSMUST00000020679.2|Nipal4|ENSMUSG00000020411.2|NIPA-like domain containing 4
mm10_v2_chr2_-_60125651_60125775	0.00452508	GCUACAU	ENSMUST00000112550.1|Baz2b|ENSMUSG00000026987.10|bromodomain adjacent to zinc finger domain, 2B
mm10_v2_chr19_+_21272276_21272296	0.00402219	GCUACAU	ENSMUST00000025659.4|Zfand5|ENSMUSG00000024750.4|zinc finger, AN1-type domain 5
mm10_v2_chr1_-_182341585_182341625	0.00374076	GCUACAU	ENSMUST00000051431.4|Fbxo28|ENSMUSG00000047539.4|F-box protein 28
mm10_v2_chr5_-_3803081_3803119	0.00372353	GCUACAU	ENSMUST00000043551.6|Ankib1|ENSMUSG00000040351.7|ankyrin repeat and IBR domain containing 1
mm10_v2_chr11_+_97362396_97362551	0.00282509	GCUACAU	ENSMUST00000045540.3|Socs7|ENSMUSG00000038485.5|suppressor of cytokine signaling 7
mm10_v2_chr4_+_108619925_108619994	0.00263961	GCUACAU	ENSMUST00000030320.6|Cc2d1b|ENSMUSG00000028582.8|coiled-coil and C2 domain containing 1B
mm10_v2_chr17_-_10319324_10319380	0.00258858	GCUACAU	ENSMUST00000097414.3|Qk|ENSMUSG00000062078.8|quaking 	ENSMUST00000042296.7|Qk|ENSMUSG00000062078.8|quaking
mm10_v2_chr17_-_47611449_47611544	0.00144368	GCUACAU	ENSMUST00000024783.8|Bysl|ENSMUSG00000023988.8|bystin-like
mm10_v2_chr9_+_14276301_14276347	0.00123521	GCUACAU	ENSMUST00000034507.7|Sesn3|ENSMUSG00000032009.7|sestrin 3
mm10_v2_chr7_+_97579868_97579901	0.000468274	GCUACAU	ENSMUST00000042399.7|Rsf1|ENSMUSG00000035623.8|remodeling and spacing factor 1 	ENSMUST00000107153.1|Rsf1|ENSMUSG00000035623.8|remodeling and spacing factor 1
