mm10_v2_chr11_-_114066174_114066218	0.827773	GGCAGUG	ENSMUST00000041627.7|Sdk2|ENSMUSG00000041592.10|sidekick homolog 2 (chicken)
mm10_v2_chr2_-_30903255_30903297	0.562831	GGCAGUG	ENSMUST00000102852.3|Ptges|ENSMUSG00000050737.11|prostaglandin E synthase
mm10_v2_chr2_+_21367532_21367542	0.558924	GGCAGUG	ENSMUST00000055946.7|Gpr158|ENSMUSG00000045967.11|G protein-coupled receptor 158
mm10_v2_chr12_-_119238794_119238863	0.556392	GGCAGUG	ENSMUST00000026360.8|Itgb8|ENSMUSG00000025321.8|integrin beta 8
mm10_v2_chr6_+_45060036_45060067	0.525375	GGCAGUG	ENSMUST00000114641.1|Cntnap2|ENSMUSG00000039419.10|contactin associated protein-like 2
mm10_v2_chr11_+_75193783_75193864	0.466489	GGCAGUG	ENSMUST00000102514.3|Rtn4rl1|ENSMUSG00000045287.6|reticulon 4 receptor-like 1
mm10_v2_chr4_+_120854786_120854843	0.413239	GGCAGUG	ENSMUST00000071093.2|Rims3|ENSMUSG00000032890.11|regulating synaptic membrane exocytosis 3
mm10_v2_chr10_-_110000219_110000219	0.403487	GGCAGUG	ENSMUST00000032719.7|Nav3|ENSMUSG00000020181.9|neuron navigator 3
mm10_v2_chr11_+_104132841_104132855	0.400057	GGCAGUG	ENSMUST00000093925.4|Crhr1|ENSMUSG00000018634.10|corticotropin releasing hormone receptor 1
mm10_v2_chr6_-_118197732_118197744	0.383439	GGCAGUG	ENSMUST00000032201.5|Ret|ENSMUSG00000030110.7|ret proto-oncogene 	ENSMUST00000088790.3|Ret|ENSMUSG00000030110.7|ret proto-oncogene
mm10_v2_chr19_+_38264761_38264831	0.356594	GGCAGUG	ENSMUST00000087252.5|Lgi1|ENSMUSG00000067242.5|leucine-rich repeat LGI family, member 1
mm10_v2_chr15_+_98632220_98632390	0.340388	GGCAGUG	ENSMUST00000109150.1|Cacnb3|ENSMUSG00000003352.7|calcium channel, voltage-dependent, beta 3 subunit
mm10_v2_chr10_-_109010955_109010983	0.338478	GGCAGUG	ENSMUST00000105276.1|Syt1|ENSMUSG00000035864.8|synaptotagmin I 	ENSMUST00000064054.7|Syt1|ENSMUSG00000035864.8|synaptotagmin I
mm10_v2_chr19_-_34747289_34747313	0.336894	GGCAGUG	ENSMUST00000009522.3|Slc16a12|ENSMUSG00000009378.3|solute carrier family 16 (monocarboxylic acid transporters), member 12
mm10_v2_chr6_+_29768443_29768542	0.325368	GGCAGUG	ENSMUST00000166718.1|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2 	ENSMUST00000102995.2|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2 	ENSMUST00000115242.2|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr3_+_107101551_107101567	0.32043	GGCAGUG	ENSMUST00000038695.1|Kcna2|ENSMUSG00000040724.1|potassium voltage-gated channel, shaker-related subfamily, member 2
mm10_v2_chr17_-_67354459_67354485	0.315533	GGCAGUG	ENSMUST00000037974.8|Ptprm|ENSMUSG00000033278.9|protein tyrosine phosphatase, receptor type, M
mm10_v2_chr9_-_99436687_99436733	0.301909	GGCAGUG	ENSMUST00000035045.8|Mras|ENSMUSG00000032470.10|muscle and microspikes RAS
mm10_v2_chr1_-_172206775_172206804	0.2939	GGCAGUG	ENSMUST00000013842.5|Pea15a|ENSMUSG00000013698.6|phosphoprotein enriched in astrocytes 15A 	ENSMUST00000111247.1|Pea15a|ENSMUSG00000013698.6|phosphoprotein enriched in astrocytes 15A
mm10_v2_chr16_-_43979050_43979093	0.293081	GGCAGUG	ENSMUST00000165648.1|Zdhhc23|ENSMUSG00000036304.7|zinc finger, DHHC domain containing 23 	ENSMUST00000036321.7|Zdhhc23|ENSMUSG00000036304.7|zinc finger, DHHC domain containing 23
mm10_v2_chr9_-_100571049_100571128	0.291105	GGCAGUG	ENSMUST00000093792.2|Slc35g2|ENSMUSG00000070287.2|solute carrier family 35, member G2
mm10_v2_chrX_+_142681398_142681439	0.290573	GGCAGUG	ENSMUST00000112889.1|Tmem164|ENSMUSG00000047045.11|transmembrane protein 164 	ENSMUST00000101198.2|Tmem164|ENSMUSG00000047045.11|transmembrane protein 164 	ENSMUST00000112891.1|Tmem164|ENSMUSG00000047045.11|transmembrane protein 164 	ENSMUST00000087333.2|Tmem164|ENSMUSG00000047045.11|transmembrane protein 164
mm10_v2_chr3_-_27710413_27710467	0.283793	GGCAGUG	ENSMUST00000046157.4|Fndc3b|ENSMUSG00000039286.7|fibronectin type III domain containing 3B
mm10_v2_chr16_-_52454074_52454074	0.282581	GGCAGUG	ENSMUST00000023312.7|Alcam|ENSMUSG00000022636.7|activated leukocyte cell adhesion molecule
mm10_v2_chr12_-_50649190_50649281	0.279699	GGCAGUG	ENSMUST00000002765.7|Prkd1|ENSMUSG00000002688.7|protein kinase D1
mm10_v2_chr4_+_58943575_58943638	0.277339	GGCAGUG	ENSMUST00000107554.1|Zkscan16|ENSMUSG00000038630.8|zinc finger with KRAB and SCAN domains 16
mm10_v2_chrX_-_143933204_143933311	0.276794	GGCAGUG	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr19_+_4711153_4711258	0.273181	GGCAGUG	ENSMUST00000008991.6|Sptbn2|ENSMUSG00000067889.4|spectrin beta, non-erythrocytic 2
mm10_v2_chr2_+_4400958_4400975	0.271792	GGCAGUG	ENSMUST00000075767.7|Frmd4a|ENSMUSG00000026657.10|FERM domain containing 4A
mm10_v2_chr15_+_30172570_30172600	0.269947	GGCAGUG	ENSMUST00000081728.5|Ctnnd2|ENSMUSG00000022240.9|catenin (cadherin associated protein), delta 2
mm10_v2_chr6_+_108783059_108783116	0.257109	GGCAGUG	ENSMUST00000032196.6|Arl8b|ENSMUSG00000030105.6|ADP-ribosylation factor-like 8B
mm10_v2_chr11_-_102088471_102088530	0.255323	GGCAGUG	ENSMUST00000017458.4|Mpp2|ENSMUSG00000017314.6|membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)
mm10_v2_chr12_+_71831064_71831178	0.254081	GGCAGUG	ENSMUST00000085299.2|Daam1|ENSMUSG00000034574.9|dishevelled associated activator of morphogenesis 1
mm10_v2_chr3_+_27182965_27182986	0.252611	GGCAGUG	ENSMUST00000046515.8|Nceh1|ENSMUSG00000027698.8|neutral cholesterol ester hydrolase 1
mm10_v2_chrX_+_93286499_93286522	0.250869	GGCAGUG	ENSMUST00000046565.7|Arx|ENSMUSG00000035277.9|aristaless related homeobox 	ENSMUST00000113947.2|Arx|ENSMUSG00000035277.9|aristaless related homeobox
mm10_v2_chr2_+_29802626_29802647	0.247315	GGCAGUG	ENSMUST00000080065.2|Slc27a4|ENSMUSG00000059316.2|solute carrier family 27 (fatty acid transporter), member 4
mm10_v2_chr9_+_45117813_45117881	0.246113	GGCAGUG	ENSMUST00000170998.1|Scn2b|ENSMUSG00000070304.5|sodium channel, voltage-gated, type II, beta 	ENSMUST00000093855.3|Scn2b|ENSMUSG00000070304.5|sodium channel, voltage-gated, type II, beta
mm10_v2_chr3_-_41082992_41083046	0.243925	GGCAGUG	ENSMUST00000058578.7|Pgrmc2|ENSMUSG00000049940.7|progesterone receptor membrane component 2
mm10_v2_chr13_+_13590402_13590456	0.239367	GGCAGUG	ENSMUST00000110559.1|Lyst|ENSMUSG00000019726.10|lysosomal trafficking regulator
mm10_v2_chr5_+_37050854_37050865	0.239363	GGCAGUG	ENSMUST00000043794.4|Jakmip1|ENSMUSG00000063646.7|janus kinase and microtubule interacting protein 1
mm10_v2_chr9_+_108986163_108986163	0.23885	GGCAGUG	ENSMUST00000052724.3|Ucn2|ENSMUSG00000049699.3|urocortin 2
mm10_v2_chr11_-_106160101_106160168	0.237486	GGCAGUG	ENSMUST00000045923.3|Limd2|ENSMUSG00000040699.7|LIM domain containing 2
mm10_v2_chr18_-_66002612_66002637	0.233933	GGCAGUG	ENSMUST00000120461.1|Lman1|ENSMUSG00000041891.9|lectin, mannose-binding, 1 	ENSMUST00000048260.7|Lman1|ENSMUSG00000041891.9|lectin, mannose-binding, 1
mm10_v2_chr11_+_104231390_104231453	0.231876	GGCAGUG	ENSMUST00000106992.3|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau
mm10_v2_chr14_-_65425453_65425472	0.225669	GGCAGUG	ENSMUST00000059339.5|Pnoc|ENSMUSG00000045731.5|prepronociceptin
mm10_v2_chr12_+_77239036_77239074	0.21972	GGCAGUG	ENSMUST00000062804.7|Fut8|ENSMUSG00000021065.9|fucosyltransferase 8
mm10_v2_chr7_-_99858872_99858906	0.218865	GGCAGUG	ENSMUST00000036274.6|Spcs2|ENSMUSG00000035227.6|signal peptidase complex subunit 2 homolog (S. cerevisiae)
mm10_v2_chr18_+_40258361_40258361	0.215217	GGCAGUG	ENSMUST00000091927.4|Kctd16|ENSMUSG00000051401.6|potassium channel tetramerisation domain containing 16
mm10_v2_chr6_-_13871477_13871518	0.213068	GGCAGUG	ENSMUST00000139231.1|2610001J05Rik|ENSMUSG00000052419.6|RIKEN cDNA 2610001J05 gene
mm10_v2_chr13_+_95696851_95696869	0.206114	GGCAGUG	ENSMUST00000022182.4|F2rl2|ENSMUSG00000021675.4|coagulation factor II (thrombin) receptor-like 2
mm10_v2_chr19_-_6840590_6840644	0.205936	GGCAGUG	ENSMUST00000170516.2|Rps6ka4|ENSMUSG00000024952.6|ribosomal protein S6 kinase, polypeptide 4 	ENSMUST00000025903.5|Rps6ka4|ENSMUSG00000024952.6|ribosomal protein S6 kinase, polypeptide 4
mm10_v2_chr14_+_14703025_14703073	0.205792	GGCAGUG	ENSMUST00000057015.6|Slc4a7|ENSMUSG00000021733.9|solute carrier family 4, sodium bicarbonate cotransporter, member 7
mm10_v2_chr6_-_13839916_13839942	0.203644	GGCAGUG	ENSMUST00000060442.7|Gpr85|ENSMUSG00000048216.7|G protein-coupled receptor 85
mm10_v2_chr4_-_132922547_132922563	0.201353	GGCAGUG	ENSMUST00000030696.4|Fam76a|ENSMUSG00000028878.5|family with sequence similarity 76, member A
mm10_v2_chr8_+_25518757_25518772	0.199746	GGCAGUG	ENSMUST00000178276.1|Fgfr1|ENSMUSG00000031565.11|fibroblast growth factor receptor 1 	ENSMUST00000179592.1|Fgfr1|ENSMUSG00000031565.11|fibroblast growth factor receptor 1
mm10_v2_chr2_+_172345565_172345590	0.199617	GGCAGUG	ENSMUST00000028995.4|Fam210b|ENSMUSG00000027495.4|family with sequence similarity 210, member B
mm10_v2_chr4_-_126533472_126533613	0.191034	GGCAGUG	ENSMUST00000084289.4|Ago4|ENSMUSG00000042500.11|argonaute RISC catalytic subunit 4
mm10_v2_chr9_+_35211155_35211224	0.190955	GGCAGUG	ENSMUST00000034541.5|Srpr|ENSMUSG00000032042.5|signal recognition particle receptor ('docking protein')
mm10_v2_chr11_-_96824008_96824159	0.190736	GGCAGUG	ENSMUST00000142065.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000167110.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000169828.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000126949.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1
mm10_v2_chr9_-_53975246_53975348	0.188476	GGCAGUG	ENSMUST00000048409.7|Elmod1|ENSMUSG00000041986.9|ELMO/CED-12 domain containing 1
mm10_v2_chr5_+_30588078_30588171	0.187093	GGCAGUG	ENSMUST00000066295.2|Kcnk3|ENSMUSG00000049265.6|potassium channel, subfamily K, member 3
mm10_v2_chr3_-_107518001_107518023	0.18643	GGCAGUG	ENSMUST00000169449.1|Slc6a17|ENSMUSG00000027894.8|solute carrier family 6 (neurotransmitter transporter), member 17 	ENSMUST00000029499.8|Slc6a17|ENSMUSG00000027894.8|solute carrier family 6 (neurotransmitter transporter), member 17
mm10_v2_chr11_+_88099146_88099181	0.185306	GGCAGUG	ENSMUST00000018522.6|Cuedc1|ENSMUSG00000018378.7|CUE domain containing 1
mm10_v2_chr12_-_84876479_84876532	0.185064	GGCAGUG	ENSMUST00000163189.1|Ltbp2|ENSMUSG00000002020.9|latent transforming growth factor beta binding protein 2 	ENSMUST00000110254.2|Ltbp2|ENSMUSG00000002020.9|latent transforming growth factor beta binding protein 2 	ENSMUST00000002073.6|Ltbp2|ENSMUSG00000002020.9|latent transforming growth factor beta binding protein 2
mm10_v2_chr1_-_161876656_161876682	0.183023	GGCAGUG	ENSMUST00000048377.5|Suco|ENSMUSG00000040297.7|SUN domain containing ossification factor
mm10_v2_chr14_-_72709986_72710027	0.181878	GGCAGUG	ENSMUST00000089017.5|Fndc3a|ENSMUSG00000033487.8|fibronectin type III domain containing 3A
mm10_v2_chr9_-_101251810_101251839	0.181709	GGCAGUG	ENSMUST00000075941.5|Ppp2r3a|ENSMUSG00000043154.9|protein phosphatase 2, regulatory subunit B'', alpha
mm10_v2_chr2_+_179442427_179442442	0.181417	GGCAGUG	ENSMUST00000000314.6|Cdh4|ENSMUSG00000000305.6|cadherin 4
mm10_v2_chr8_+_75033673_75033702	0.178614	GGCAGUG	ENSMUST00000078847.5|Tom1|ENSMUSG00000042870.8|target of myb1 homolog (chicken) 	ENSMUST00000165630.1|Tom1|ENSMUSG00000042870.8|target of myb1 homolog (chicken)
mm10_v2_chr9_-_70657121_70657188	0.177215	GGCAGUG	ENSMUST00000049031.5|Fam63b|ENSMUSG00000042444.9|family with sequence similarity 63, member B
mm10_v2_chrX_-_38252398_38252439	0.176213	GGCAGUG	ENSMUST00000089056.3|Tmem255a|ENSMUSG00000036502.8|transmembrane protein 255A 	ENSMUST00000089054.4|Tmem255a|ENSMUSG00000036502.8|transmembrane protein 255A 	ENSMUST00000066498.7|Tmem255a|ENSMUSG00000036502.8|transmembrane protein 255A
mm10_v2_chr18_+_38993126_38993186	0.176189	GGCAGUG	ENSMUST00000097593.2|Arhgap26|ENSMUSG00000036452.11|Rho GTPase activating protein 26
mm10_v2_chr15_-_78120011_78120033	0.176084	GGCAGUG	ENSMUST00000019290.2|Cacng2|ENSMUSG00000019146.2|calcium channel, voltage-dependent, gamma subunit 2
mm10_v2_chr5_+_75152274_75152297	0.173143	GGCAGUG	ENSMUST00000000476.8|Pdgfra|ENSMUSG00000029231.9|platelet derived growth factor receptor, alpha polypeptide
mm10_v2_chr12_-_87200200_87200284	0.169233	GGCAGUG	ENSMUST00000037418.5|Tmed8|ENSMUSG00000034111.5|transmembrane emp24 domain containing 8
mm10_v2_chr17_-_51832666_51832678	0.166612	GGCAGUG	ENSMUST00000144331.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr2_+_106693185_106693278	0.166399	GGCAGUG	ENSMUST00000111063.1|Mpped2|ENSMUSG00000016386.9|metallophosphoesterase domain containing 2
mm10_v2_chr6_+_17463749_17463809	0.164565	GGCAGUG	ENSMUST00000115443.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr3_+_89245952_89245978	0.16411	GGCAGUG	ENSMUST00000040888.5|Krtcap2|ENSMUSG00000042747.6|keratinocyte associated protein 2
mm10_v2_chr11_+_62281457_62281495	0.159888	GGCAGUG	ENSMUST00000101075.4|Ttc19|ENSMUSG00000042298.12|tetratricopeptide repeat domain 19 	ENSMUST00000050646.6|Ttc19|ENSMUSG00000042298.12|tetratricopeptide repeat domain 19
mm10_v2_chr3_+_69316857_69316869	0.154663	GGCAGUG	ENSMUST00000029355.6|Ppm1l|ENSMUSG00000027784.8|protein phosphatase 1 (formerly 2C)-like
mm10_v2_chr9_+_68653761_68653786	0.153737	GGCAGUG	ENSMUST00000034766.7|Rora|ENSMUSG00000032238.11|RAR-related orphan receptor alpha
mm10_v2_chr4_-_126968124_126968154	0.153688	GGCAGUG	ENSMUST00000106108.2|Zmym4|ENSMUSG00000042446.10|zinc finger, MYM-type 4
mm10_v2_chr14_+_14012491_14012693	0.152683	GGCAGUG	ENSMUST00000022257.2|Atxn7|ENSMUSG00000021738.4|ataxin 7
mm10_v2_chr9_-_107635330_107635353	0.15251	GGCAGUG	ENSMUST00000055704.6|Gnai2|ENSMUSG00000032562.8|guanine nucleotide binding protein (G protein), alpha inhibiting 2
mm10_v2_chr15_-_98296083_98296157	0.152305	GGCAGUG	ENSMUST00000169721.1|Zfp641|ENSMUSG00000022987.5|zinc finger protein 641 	ENSMUST00000023722.5|Zfp641|ENSMUSG00000022987.5|zinc finger protein 641
mm10_v2_chr1_-_174921813_174921827	0.149844	GGCAGUG	ENSMUST00000055294.3|Grem2|ENSMUSG00000050069.3|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)
mm10_v2_chr8_-_26119125_26119233	0.147111	GGCAGUG	ENSMUST00000037182.7|Hook3|ENSMUSG00000037234.10|hook homolog 3 (Drosophila)
mm10_v2_chr5_+_19907502_19907551	0.14647	GGCAGUG	ENSMUST00000101558.3|Magi2|ENSMUSG00000040003.11|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm10_v2_chr13_+_54371340_54371352	0.144343	GGCAGUG	ENSMUST00000026985.8|Cplx2|ENSMUSG00000025867.8|complexin 2
mm10_v2_chr1_-_135585314_135585364	0.142405	GGCAGUG	ENSMUST00000040599.8|Nav1|ENSMUSG00000009418.9|neuron navigator 1 	ENSMUST00000067414.6|Nav1|ENSMUSG00000009418.9|neuron navigator 1
mm10_v2_chr11_+_69088490_69088553	0.137611	GGCAGUG	ENSMUST00000021273.6|Vamp2|ENSMUSG00000020894.10|vesicle-associated membrane protein 2 	ENSMUST00000117780.1|Vamp2|ENSMUSG00000020894.10|vesicle-associated membrane protein 2
mm10_v2_chr6_+_66896397_66896479	0.13727	GGCAGUG	ENSMUST00000043148.6|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114228.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114227.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114226.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114225.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114224.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12
mm10_v2_chr7_-_27355944_27356019	0.136487	GGCAGUG	ENSMUST00000003857.6|Shkbp1|ENSMUSG00000089832.2|Sh3kbp1 binding protein 1
mm10_v2_chr1_-_191397026_191397041	0.134755	GGCAGUG	ENSMUST00000067976.3|Ppp2r5a|ENSMUSG00000026626.6|protein phosphatase 2, regulatory subunit B (B56), alpha isoform
mm10_v2_chr4_+_99929414_99929438	0.133595	GGCAGUG	ENSMUST00000058351.9|Pgm2|ENSMUSG00000025791.12|phosphoglucomutase 2
mm10_v2_chrX_-_142390334_142390345	0.132988	GGCAGUG	ENSMUST00000112907.1|Acsl4|ENSMUSG00000031278.6|acyl-CoA synthetase long-chain family member 4
mm10_v2_chr2_-_63184253_63184292	0.130977	GGCAGUG	ENSMUST00000075052.3|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7 	ENSMUST00000112454.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr2_-_26445175_26445226	0.127202	GGCAGUG	ENSMUST00000114082.2|Sec16a|ENSMUSG00000026924.11|SEC16 homolog A (S. cerevisiae) 	ENSMUST00000091252.4|Sec16a|ENSMUSG00000026924.11|SEC16 homolog A (S. cerevisiae)
mm10_v2_chr17_+_35916541_35916566	0.123586	GGCAGUG	ENSMUST00000087211.2|Ppp1r10|ENSMUSG00000039220.10|protein phosphatase 1, regulatory subunit 10
mm10_v2_chr4_+_32983008_32983155	0.118203	GGCAGUG	ENSMUST00000098190.3|Rragd|ENSMUSG00000028278.8|Ras-related GTP binding D 	ENSMUST00000029946.7|Rragd|ENSMUSG00000028278.8|Ras-related GTP binding D
mm10_v2_chr19_-_7105729_7105729	0.118074	GGCAGUG	ENSMUST00000113383.2|Flrt1|ENSMUSG00000047787.7|fibronectin leucine rich transmembrane protein 1
mm10_v2_chr8_+_40862379_40862578	0.118062	GGCAGUG	ENSMUST00000098816.3|Slc7a2|ENSMUSG00000031596.9|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 	ENSMUST00000057784.8|Slc7a2|ENSMUSG00000031596.9|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 	ENSMUST00000141505.1|Slc7a2|ENSMUSG00000031596.9|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
mm10_v2_chr16_-_91011093_91011113	0.117264	GGCAGUG	ENSMUST00000170853.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1 	ENSMUST00000118390.2|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr11_-_107470699_107470726	0.116398	GGCAGUG	ENSMUST00000103064.3|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr7_-_114117761_114117787	0.114798	GGCAGUG	ENSMUST00000069449.5|Rras2|ENSMUSG00000055723.5|related RAS viral (r-ras) oncogene homolog 2
mm10_v2_chr12_+_52699297_52699411	0.113878	GGCAGUG	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chr2_+_155381808_155381884	0.113099	GGCAGUG	ENSMUST00000043237.7|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2 	ENSMUST00000174685.1|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2
mm10_v2_chr11_-_51857624_51857686	0.111031	GGCAGUG	ENSMUST00000020655.7|Phf15|ENSMUSG00000020387.9|PHD finger protein 15 	ENSMUST00000109090.1|Phf15|ENSMUSG00000020387.9|PHD finger protein 15
mm10_v2_chr8_-_41133697_41133755	0.110758	GGCAGUG	ENSMUST00000155055.1|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1 	ENSMUST00000059115.6|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1 	ENSMUST00000145860.1|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr16_+_33251415_33251456	0.109431	GGCAGUG	ENSMUST00000023502.4|Snx4|ENSMUSG00000022808.4|sorting nexin 4
mm10_v2_chr12_-_75735729_75735736	0.107912	GGCAGUG	ENSMUST00000021450.4|Sgpp1|ENSMUSG00000021054.5|sphingosine-1-phosphate phosphatase 1
mm10_v2_chr8_-_122699066_122699119	0.107735	GGCAGUG	ENSMUST00000127984.1|Cbfa2t3|ENSMUSG00000006362.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm10_v2_chr4_-_59549314_59549364	0.107619	GGCAGUG	ENSMUST00000148331.2|Ptbp3|ENSMUSG00000028382.9|polypyrimidine tract binding protein 3 	ENSMUST00000030076.5|Ptbp3|ENSMUSG00000028382.9|polypyrimidine tract binding protein 3
mm10_v2_chr14_+_63436394_63436525	0.105816	GGCAGUG	ENSMUST00000121288.1|Fam167a|ENSMUSG00000035095.11|family with sequence similarity 167, member A
mm10_v2_chr8_-_60983215_60983319	0.104548	GGCAGUG	ENSMUST00000004430.7|Clcn3|ENSMUSG00000004319.9|chloride channel 3 	ENSMUST00000110301.1|Clcn3|ENSMUSG00000004319.9|chloride channel 3 	ENSMUST00000093490.2|Clcn3|ENSMUSG00000004319.9|chloride channel 3
mm10_v2_chrX_-_48454152_48454193	0.104286	GGCAGUG	ENSMUST00000114958.1|Elf4|ENSMUSG00000031103.6|E74-like factor 4 (ets domain transcription factor)
mm10_v2_chr9_-_56928350_56928392	0.10286	GGCAGUG	ENSMUST00000050916.5|Snx33|ENSMUSG00000032733.5|sorting nexin 33
mm10_v2_chr15_-_79546741_79546787	0.102329	GGCAGUG	ENSMUST00000054014.7|Ddx17|ENSMUSG00000055065.6|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
mm10_v2_chr1_+_180726019_180726106	0.101158	GGCAGUG	ENSMUST00000027780.4|Acbd3|ENSMUSG00000026499.4|acyl-Coenzyme A binding domain containing 3
mm10_v2_chr10_+_61680302_61680361	0.100433	GGCAGUG	ENSMUST00000020285.8|Sar1a|ENSMUSG00000020088.9|SAR1 gene homolog A (S. cerevisiae)
mm10_v2_chr19_+_6418731_6418810	0.0993792	GGCAGUG	ENSMUST00000113462.1|Nrxn2|ENSMUSG00000033768.10|neurexin II 	ENSMUST00000077182.6|Nrxn2|ENSMUSG00000033768.10|neurexin II 	ENSMUST00000113461.1|Nrxn2|ENSMUSG00000033768.10|neurexin II
mm10_v2_chr1_-_58586191_58586323	0.0989531	GGCAGUG	ENSMUST00000038372.7|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B 	ENSMUST00000097724.3|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B 	ENSMUST00000161000.1|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B 	ENSMUST00000161600.1|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B
mm10_v2_chr6_-_87811771_87811802	0.0980905	GGCAGUG	ENSMUST00000078647.4|Rab43|ENSMUSG00000030055.10|RAB43, member RAS oncogene family 	ENSMUST00000032135.5|Rab43|ENSMUSG00000030055.10|RAB43, member RAS oncogene family
mm10_v2_chr1_+_93754899_93754932	0.0979837	GGCAGUG	ENSMUST00000027502.9|Atg4b|ENSMUSG00000026280.11|autophagy related 4B, cysteine peptidase
mm10_v2_chr2_-_33371400_33371484	0.0971332	GGCAGUG	ENSMUST00000113164.1|Ralgps1|ENSMUSG00000038831.10|Ral GEF with PH domain and SH3 binding motif 1 	ENSMUST00000091039.2|Ralgps1|ENSMUSG00000038831.10|Ral GEF with PH domain and SH3 binding motif 1 	ENSMUST00000042615.6|Ralgps1|ENSMUSG00000038831.10|Ral GEF with PH domain and SH3 binding motif 1
mm10_v2_chrX_+_73716577_73716618	0.0969203	GGCAGUG	ENSMUST00000002084.7|Abcd1|ENSMUSG00000031378.8|ATP-binding cassette, sub-family D (ALD), member 1
mm10_v2_chr11_+_70657196_70657285	0.0966773	GGCAGUG	ENSMUST00000157027.1|Eno3|ENSMUSG00000060600.9|enolase 3, beta muscle 	ENSMUST00000072841.5|Eno3|ENSMUSG00000060600.9|enolase 3, beta muscle 	ENSMUST00000108548.1|Eno3|ENSMUSG00000060600.9|enolase 3, beta muscle 	ENSMUST00000126241.1|Eno3|ENSMUSG00000060600.9|enolase 3, beta muscle
mm10_v2_chr9_+_94669876_94669928	0.0953149	GGCAGUG	ENSMUST00000033463.9|Slc9a9|ENSMUSG00000031129.9|solute carrier family 9 (sodium/hydrogen exchanger), member 9
mm10_v2_chr1_-_84284548_84284645	0.0947851	GGCAGUG	ENSMUST00000177458.1|Pid1|ENSMUSG00000045658.10|phosphotyrosine interaction domain containing 1 	ENSMUST00000168574.2|Pid1|ENSMUSG00000045658.10|phosphotyrosine interaction domain containing 1
mm10_v2_chr5_+_134099704_134099760	0.0943566	GGCAGUG	ENSMUST00000016088.8|Gatsl2|ENSMUSG00000015944.8|GATS protein-like 2
mm10_v2_chr14_+_30479565_30479685	0.093491	GGCAGUG	ENSMUST00000022535.7|Dcp1a|ENSMUSG00000021962.8|DCP1 decapping enzyme homolog A (S. cerevisiae)
mm10_v2_chr15_-_3995708_3995760	0.0934562	GGCAGUG	ENSMUST00000046633.8|AW549877|ENSMUSG00000041935.9|expressed sequence AW549877
mm10_v2_chr3_-_127409044_127409064	0.0930049	GGCAGUG	ENSMUST00000182704.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr12_+_76533540_76533597	0.0927732	GGCAGUG	ENSMUST00000075249.4|Plekhg3|ENSMUSG00000052609.8|pleckstrin homology domain containing, family G (with RhoGef domain) member 3
mm10_v2_chr1_+_93803945_93803998	0.0904459	GGCAGUG	ENSMUST00000027505.6|Ing5|ENSMUSG00000026283.7|inhibitor of growth family, member 5
mm10_v2_chr10_+_94036001_94036121	0.090401	GGCAGUG	ENSMUST00000020208.4|Fgd6|ENSMUSG00000020021.4|FYVE, RhoGEF and PH domain containing 6
mm10_v2_chr7_-_144553657_144553757	0.0898214	GGCAGUG	ENSMUST00000168134.3|Ppfia1|ENSMUSG00000037519.10|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
mm10_v2_chr9_-_43105718_43105793	0.0894993	GGCAGUG	ENSMUST00000165665.1|Arhgef12|ENSMUSG00000059495.7|Rho guanine nucleotide exchange factor (GEF) 12
mm10_v2_chr5_-_76304474_76304548	0.0893998	GGCAGUG	ENSMUST00000075159.1|Clock|ENSMUSG00000029238.8|circadian locomotor output cycles kaput
mm10_v2_chr1_-_37541003_37541046	0.0893949	GGCAGUG	ENSMUST00000151952.1|Mgat4a|ENSMUSG00000026110.9|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm10_v2_chr15_-_102257449_102257517	0.0890554	GGCAGUG	ENSMUST00000043172.8|Rarg|ENSMUSG00000001288.8|retinoic acid receptor, gamma
mm10_v2_chrX_+_160390684_160390730	0.0853072	GGCAGUG	ENSMUST00000112408.2|Gpr64|ENSMUSG00000031298.9|G protein-coupled receptor 64 	ENSMUST00000112402.1|Gpr64|ENSMUSG00000031298.9|G protein-coupled receptor 64 	ENSMUST00000112401.1|Gpr64|ENSMUSG00000031298.9|G protein-coupled receptor 64 	ENSMUST00000112400.1|Gpr64|ENSMUSG00000031298.9|G protein-coupled receptor 64 	ENSMUST00000112405.2|Gpr64|ENSMUSG00000031298.9|G protein-coupled receptor 64 	ENSMUST00000112404.2|Gpr64|ENSMUSG00000031298.9|G protein-coupled receptor 64 	ENSMUST00000146805.1|Gpr64|ENSMUSG00000031298.9|G protein-coupled receptor 64
mm10_v2_chr7_-_90457167_90457229	0.0852988	GGCAGUG	ENSMUST00000032844.5|Tmem126a|ENSMUSG00000030615.5|transmembrane protein 126A
mm10_v2_chr17_-_36951636_36951741	0.0845965	GGCAGUG	ENSMUST00000040402.7|Ppp1r11|ENSMUSG00000036398.7|protein phosphatase 1, regulatory (inhibitor) subunit 11 	ENSMUST00000174711.1|Ppp1r11|ENSMUSG00000036398.7|protein phosphatase 1, regulatory (inhibitor) subunit 11
mm10_v2_chr12_+_108792946_108792988	0.0822269	GGCAGUG	ENSMUST00000021692.7|Yy1|ENSMUSG00000021264.11|YY1 transcription factor
mm10_v2_chrX_+_99136119_99136138	0.0807302	GGCAGUG	ENSMUST00000052839.6|Efnb1|ENSMUSG00000031217.8|ephrin B1
mm10_v2_chr5_-_114444036_114444059	0.080563	GGCAGUG	ENSMUST00000031560.7|Mmab|ENSMUSG00000029575.11|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)
mm10_v2_chr16_-_21694570_21694665	0.0786506	GGCAGUG	ENSMUST00000053336.7|2510009E07Rik|ENSMUSG00000043391.9|RIKEN cDNA 2510009E07 gene
mm10_v2_chr9_-_50727921_50728008	0.0785711	GGCAGUG	ENSMUST00000118707.1|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1 	ENSMUST00000034566.8|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1
mm10_v2_chr15_-_97908261_97908316	0.0783819	GGCAGUG	ENSMUST00000023119.8|Vdr|ENSMUSG00000022479.9|vitamin D receptor
mm10_v2_chr4_-_147936713_147936767	0.0782098	GGCAGUG	ENSMUST00000105712.1|Plod1|ENSMUSG00000019055.9|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 	ENSMUST00000019199.7|Plod1|ENSMUSG00000019055.9|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
mm10_v2_chr2_-_26503814_26503836	0.0774104	GGCAGUG	ENSMUST00000028288.4|Notch1|ENSMUSG00000026923.9|notch 1
mm10_v2_chr9_-_89622986_89622986	0.0770761	GGCAGUG	ENSMUST00000044491.6|AF529169|ENSMUSG00000039313.8|cDNA sequence AF529169
mm10_v2_chr19_-_5273080_5273129	0.0768934	GGCAGUG	ENSMUST00000025786.7|Pacs1|ENSMUSG00000024855.9|phosphofurin acidic cluster sorting protein 1
mm10_v2_chr11_-_74897052_74897094	0.0757928	GGCAGUG	ENSMUST00000057631.5|Sgsm2|ENSMUSG00000038351.8|small G protein signaling modulator 2 	ENSMUST00000081799.5|Sgsm2|ENSMUSG00000038351.8|small G protein signaling modulator 2
mm10_v2_chr2_+_109917639_109917656	0.0745386	GGCAGUG	ENSMUST00000046548.7|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4 	ENSMUST00000111037.2|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4
mm10_v2_chr1_-_166002591_166002609	0.0726318	GGCAGUG	ENSMUST00000111429.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000176800.1|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr11_-_118419018_118419086	0.0715623	GGCAGUG	ENSMUST00000092378.3|Cant1|ENSMUSG00000025575.8|calcium activated nucleotidase 1 	ENSMUST00000106289.2|Cant1|ENSMUSG00000025575.8|calcium activated nucleotidase 1 	ENSMUST00000106288.1|Cant1|ENSMUSG00000025575.8|calcium activated nucleotidase 1 	ENSMUST00000106287.1|Cant1|ENSMUSG00000025575.8|calcium activated nucleotidase 1 	ENSMUST00000017620.3|Cant1|ENSMUSG00000025575.8|calcium activated nucleotidase 1
mm10_v2_chr5_-_22344690_22344710	0.0706814	GGCAGUG	ENSMUST00000062372.7|Reln|ENSMUSG00000042453.8|reelin 	ENSMUST00000161356.1|Reln|ENSMUSG00000042453.8|reelin
mm10_v2_chr2_+_155133501_155133559	0.0694947	GGCAGUG	ENSMUST00000029126.8|Itch|ENSMUSG00000027598.10|itchy, E3 ubiquitin protein ligase 	ENSMUST00000109685.1|Itch|ENSMUSG00000027598.10|itchy, E3 ubiquitin protein ligase
mm10_v2_chr9_+_101074727_101074727	0.0689513	GGCAGUG	ENSMUST00000085177.3|Msl2|ENSMUSG00000066415.3|male-specific lethal 2 homolog (Drosophila)
mm10_v2_chr1_-_36445248_36445271	0.0676486	GGCAGUG	ENSMUST00000125304.1|Lman2l|ENSMUSG00000001143.7|lectin, mannose-binding 2-like 	ENSMUST00000115011.1|Lman2l|ENSMUSG00000001143.7|lectin, mannose-binding 2-like
mm10_v2_chr14_-_16575456_16575501	0.0672911	GGCAGUG	ENSMUST00000063750.6|Rarb|ENSMUSG00000017491.8|retinoic acid receptor, beta
mm10_v2_chr15_+_66577536_66577637	0.0670744	GGCAGUG	ENSMUST00000048188.8|Phf20l1|ENSMUSG00000072501.4|PHD finger protein 20-like 1
mm10_v2_chr6_+_110645572_110645588	0.0670078	GGCAGUG	ENSMUST00000071076.6|Grm7|ENSMUSG00000056755.7|glutamate receptor, metabotropic 7 	ENSMUST00000172951.1|Grm7|ENSMUSG00000056755.7|glutamate receptor, metabotropic 7
mm10_v2_chr11_-_96977660_96977711	0.0664982	GGCAGUG	ENSMUST00000107626.1|Sp2|ENSMUSG00000018678.6|Sp2 transcription factor 	ENSMUST00000107624.1|Sp2|ENSMUSG00000018678.6|Sp2 transcription factor
mm10_v2_chr1_-_132542934_132542954	0.0656233	GGCAGUG	ENSMUST00000086521.4|Cntn2|ENSMUSG00000053024.8|contactin 2
mm10_v2_chr5_-_67427794_67427813	0.0654574	GGCAGUG	ENSMUST00000169190.1|Bend4|ENSMUSG00000092060.1|BEN domain containing 4
mm10_v2_chr5_+_43233463_43233491	0.0645899	GGCAGUG	ENSMUST00000169035.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2 	ENSMUST00000166713.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2
mm10_v2_chrX_+_56346390_56346415	0.0622007	GGCAGUG	ENSMUST00000101560.3|Zfp449|ENSMUSG00000073176.4|zinc finger protein 449
mm10_v2_chr7_+_80186835_80186904	0.0619264	GGCAGUG	ENSMUST00000107383.1|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 	ENSMUST00000032754.7|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm10_v2_chr12_+_112722163_112722239	0.0618119	GGCAGUG	ENSMUST00000101018.3|Cep170b|ENSMUSG00000072825.4|centrosomal protein 170B 	ENSMUST00000179041.1|Cep170b|ENSMUSG00000072825.4|centrosomal protein 170B 	ENSMUST00000092279.6|Cep170b|ENSMUSG00000072825.4|centrosomal protein 170B
mm10_v2_chr11_-_98587193_98587368	0.0618116	GGCAGUG	ENSMUST00000052919.7|Ormdl3|ENSMUSG00000038150.7|ORM1-like 3 (S. cerevisiae)
mm10_v2_chr12_-_12941827_12941914	0.0603346	GGCAGUG	ENSMUST00000043396.7|Mycn|ENSMUSG00000037169.8|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)
mm10_v2_chr3_+_94478831_94478831	0.0598177	GGCAGUG	ENSMUST00000029784.5|Celf3|ENSMUSG00000028137.5|CUGBP, Elav-like family member 3
mm10_v2_chr19_-_41263931_41264008	0.0587149	GGCAGUG	ENSMUST00000025989.8|Tm9sf3|ENSMUSG00000025016.10|transmembrane 9 superfamily member 3
mm10_v2_chr10_-_112928974_112929026	0.0584156	GGCAGUG	ENSMUST00000099276.2|Atxn7l3b|ENSMUSG00000074748.2|ataxin 7-like 3B
mm10_v2_chr3_+_142701067_142701105	0.0576184	GGCAGUG	ENSMUST00000044392.4|Ccbl2|ENSMUSG00000040213.7|cysteine conjugate-beta lyase 2
mm10_v2_chr11_+_4986824_4986894	0.0574208	GGCAGUG	ENSMUST00000009234.9|Ap1b1|ENSMUSG00000009090.11|adaptor protein complex AP-1, beta 1 subunit 	ENSMUST00000109897.1|Ap1b1|ENSMUSG00000009090.11|adaptor protein complex AP-1, beta 1 subunit
mm10_v2_chr6_+_122819888_122819938	0.0572403	GGCAGUG	ENSMUST00000003238.7|Foxj2|ENSMUSG00000003154.9|forkhead box J2
mm10_v2_chrX_+_42149288_42149412	0.057113	GGCAGUG	ENSMUST00000115073.2|Stag2|ENSMUSG00000025862.8|stromal antigen 2 	ENSMUST00000115072.1|Stag2|ENSMUSG00000025862.8|stromal antigen 2
mm10_v2_chr11_+_82892116_82892128	0.0570271	GGCAGUG	ENSMUST00000018988.5|Fndc8|ENSMUSG00000018844.6|fibronectin type III domain containing 8
mm10_v2_chr7_-_121707253_121707460	0.0567149	GGCAGUG	ENSMUST00000046929.6|Usp31|ENSMUSG00000063317.6|ubiquitin specific peptidase 31
mm10_v2_chr1_+_75521521_75521602	0.0547095	GGCAGUG	ENSMUST00000027414.9|Stk11ip|ENSMUSG00000026213.9|serine/threonine kinase 11 interacting protein 	ENSMUST00000113553.1|Stk11ip|ENSMUSG00000026213.9|serine/threonine kinase 11 interacting protein
mm10_v2_chr12_+_64917901_64917944	0.0532124	GGCAGUG	ENSMUST00000058135.4|Gm527|ENSMUSG00000047227.4|predicted gene 527
mm10_v2_chr3_+_105452326_105452365	0.0527294	GGCAGUG	ENSMUST00000098761.3|Kcnd3|ENSMUSG00000040896.10|potassium voltage-gated channel, Shal-related family, member 3
mm10_v2_chr16_+_17451981_17452034	0.051897	GGCAGUG	ENSMUST00000006293.3|Crkl|ENSMUSG00000006134.3|v-crk sarcoma virus CT10 oncogene homolog (avian)-like
mm10_v2_chr17_+_26715644_26715724	0.0514854	GGCAGUG	ENSMUST00000062519.7|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor 	ENSMUST00000144221.1|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor 	ENSMUST00000142539.1|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor 	ENSMUST00000151681.1|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor
mm10_v2_chr2_+_71117923_71118061	0.0513225	GGCAGUG	ENSMUST00000028403.2|Cybrd1|ENSMUSG00000027015.4|cytochrome b reductase 1
mm10_v2_chr14_-_70159433_70159502	0.051258	GGCAGUG	ENSMUST00000058240.7|9930012K11Rik|ENSMUSG00000044551.7|RIKEN cDNA 9930012K11 gene 	ENSMUST00000153871.1|9930012K11Rik|ENSMUSG00000044551.7|RIKEN cDNA 9930012K11 gene
mm10_v2_chr15_-_79403248_79403309	0.0511138	GGCAGUG	ENSMUST00000074991.2|Tmem184b|ENSMUSG00000009035.7|transmembrane protein 184b
mm10_v2_chr14_+_103070216_103070233	0.0510599	GGCAGUG	ENSMUST00000022721.6|Cln5|ENSMUSG00000022125.6|ceroid-lipofuscinosis, neuronal 5
mm10_v2_chr6_-_99266494_99266540	0.049351	GGCAGUG	ENSMUST00000113326.2|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr17_-_34959232_34959238	0.0468265	GGCAGUG	ENSMUST00000165202.1|Hspa1b|ENSMUSG00000090877.2|heat shock protein 1B 	ENSMUST00000172753.1|Hspa1b|ENSMUSG00000090877.2|heat shock protein 1B
mm10_v2_chr2_+_164832862_164832878	0.0446363	GGCAGUG	ENSMUST00000103093.3|Ctsa|ENSMUSG00000017760.9|cathepsin A 	ENSMUST00000017904.2|Ctsa|ENSMUSG00000017760.9|cathepsin A
mm10_v2_chr10_-_115315546_115315615	0.0442728	GGCAGUG	ENSMUST00000020343.7|Rab21|ENSMUSG00000020132.9|RAB21, member RAS oncogene family
mm10_v2_chr17_+_26561479_26561505	0.0442229	GGCAGUG	ENSMUST00000167662.1|Ergic1|ENSMUSG00000001576.8|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
mm10_v2_chr4_+_42916647_42916712	0.044025	GGCAGUG	ENSMUST00000132173.1|N28178|ENSMUSG00000036062.7|expressed sequence N28178 	ENSMUST00000107975.1|N28178|ENSMUSG00000036062.7|expressed sequence N28178
mm10_v2_chr3_+_95588928_95588953	0.0437909	GGCAGUG	ENSMUST00000177390.1|Golph3l|ENSMUSG00000046519.9|golgi phosphoprotein 3-like 	ENSMUST00000098861.4|Golph3l|ENSMUSG00000046519.9|golgi phosphoprotein 3-like 	ENSMUST00000060323.5|Golph3l|ENSMUSG00000046519.9|golgi phosphoprotein 3-like
mm10_v2_chr5_-_8367982_8368107	0.0436989	GGCAGUG	ENSMUST00000088761.4|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000115386.1|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000050166.7|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000046838.7|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000115388.2|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000088744.5|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000115385.1|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22
mm10_v2_chr12_+_71015966_71016063	0.0436669	GGCAGUG	ENSMUST00000046305.5|Arid4a|ENSMUSG00000048118.11|AT rich interactive domain 4A (RBP1-like)
mm10_v2_chrX_-_142306170_142306294	0.0433624	GGCAGUG	ENSMUST00000134825.2|Kcne1l|ENSMUSG00000090122.3|potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene
mm10_v2_chr4_+_123917420_123917510	0.0431723	GGCAGUG	ENSMUST00000030399.6|Rragc|ENSMUSG00000028646.10|Ras-related GTP binding C
mm10_v2_chr17_-_47688028_47688183	0.0428542	GGCAGUG	ENSMUST00000113301.1|Tomm6|ENSMUSG00000033475.9|translocase of outer mitochondrial membrane 6 homolog (yeast) 	ENSMUST00000113302.3|Tomm6|ENSMUSG00000033475.9|translocase of outer mitochondrial membrane 6 homolog (yeast)
mm10_v2_chr5_-_106696819_106696839	0.042539	GGCAGUG	ENSMUST00000127434.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000112696.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000112698.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644
mm10_v2_chr3_+_100825452_100825467	0.0420627	GGCAGUG	ENSMUST00000054791.7|Vtcn1|ENSMUSG00000051076.7|V-set domain containing T cell activation inhibitor 1
mm10_v2_chr13_+_14063776_14063822	0.0415015	GGCAGUG	ENSMUST00000129488.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110536.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110534.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000039538.8|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110533.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like)
mm10_v2_chr17_+_28801090_28801145	0.0413554	GGCAGUG	ENSMUST00000004985.9|Brpf3|ENSMUSG00000063952.9|bromodomain and PHD finger containing, 3
mm10_v2_chr19_+_6046576_6046662	0.0411338	GGCAGUG	ENSMUST00000138532.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin 	ENSMUST00000129081.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin 	ENSMUST00000156550.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin
mm10_v2_chr5_+_30814571_30814641	0.0409382	GGCAGUG	ENSMUST00000031058.8|Mapre3|ENSMUSG00000029166.8|microtubule-associated protein, RP/EB family, member 3
mm10_v2_chr1_+_176814660_176814660	0.0405257	GGCAGUG	ENSMUST00000056773.8|Sdccag8|ENSMUSG00000026504.11|serologically defined colon cancer antigen 8 	ENSMUST00000027785.8|Sdccag8|ENSMUSG00000026504.11|serologically defined colon cancer antigen 8
mm10_v2_chr2_+_136713444_136713492	0.0404954	GGCAGUG	ENSMUST00000028727.4|Snap25|ENSMUSG00000027273.7|synaptosomal-associated protein 25 	ENSMUST00000110098.3|Snap25|ENSMUSG00000027273.7|synaptosomal-associated protein 25
mm10_v2_chr15_+_80711292_80711340	0.0404921	GGCAGUG	ENSMUST00000067689.7|Tnrc6b|ENSMUSG00000047888.9|trinucleotide repeat containing 6b
mm10_v2_chr9_+_74861888_74861921	0.0404428	GGCAGUG	ENSMUST00000056006.9|Onecut1|ENSMUSG00000043013.9|one cut domain, family member 1
mm10_v2_chr14_+_47276910_47276936	0.0396848	GGCAGUG	ENSMUST00000065562.4|Socs4|ENSMUSG00000048379.8|suppressor of cytokine signaling 4
mm10_v2_chr6_+_38433913_38433965	0.0393525	GGCAGUG	ENSMUST00000160583.1|Ubn2|ENSMUSG00000038538.11|ubinuclein 2
mm10_v2_chr17_-_23645264_23645309	0.0386881	GGCAGUG	ENSMUST00000024696.7|Mmp25|ENSMUSG00000023903.7|matrix metallopeptidase 25
mm10_v2_chr2_+_59160884_59161008	0.038144	GGCAGUG	ENSMUST00000037903.8|Pkp4|ENSMUSG00000026991.14|plakophilin 4
mm10_v2_chr9_-_64253617_64253635	0.0379209	GGCAGUG	ENSMUST00000005066.8|Map2k1|ENSMUSG00000004936.8|mitogen-activated protein kinase kinase 1
mm10_v2_chr4_-_49597860_49597892	0.0376762	GGCAGUG	ENSMUST00000042750.2|Tmem246|ENSMUSG00000039611.2|transmembrane protein 246
mm10_v2_chr2_-_84650714_84650749	0.0375673	GGCAGUG	ENSMUST00000111697.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111670.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111696.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111678.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111690.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111695.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111677.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111698.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000099941.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111676.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111694.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111675.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111689.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111687.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111692.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111685.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111686.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111688.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111693.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111684.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1
mm10_v2_chr7_-_126799163_126799254	0.0368542	GGCAGUG	ENSMUST00000032934.5|Aldoa|ENSMUSG00000030695.7|aldolase A, fructose-bisphosphate
mm10_v2_chr15_-_97767798_97767972	0.0352875	GGCAGUG	ENSMUST00000129223.2|Rapgef3|ENSMUSG00000022469.10|Rap guanine nucleotide exchange factor (GEF) 3 	ENSMUST00000126854.2|Rapgef3|ENSMUSG00000022469.10|Rap guanine nucleotide exchange factor (GEF) 3 	ENSMUST00000135080.1|Rapgef3|ENSMUSG00000022469.10|Rap guanine nucleotide exchange factor (GEF) 3
mm10_v2_chr3_+_132684106_132684145	0.0340127	GGCAGUG	ENSMUST00000169172.1|Tbck|ENSMUSG00000028030.6|TBC1 domain containing kinase 	ENSMUST00000029664.6|Tbck|ENSMUSG00000028030.6|TBC1 domain containing kinase
mm10_v2_chr19_+_8941865_8942050	0.0340124	GGCAGUG	ENSMUST00000096240.2|Mta2|ENSMUSG00000071646.3|metastasis-associated gene family, member 2
mm10_v2_chr4_-_35845204_35845204	0.0332831	GGCAGUG	ENSMUST00000164772.1|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2 	ENSMUST00000065173.2|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2
mm10_v2_chr17_-_15375969_15375983	0.0326027	GGCAGUG	ENSMUST00000014917.7|Dll1|ENSMUSG00000014773.7|delta-like 1 (Drosophila)
mm10_v2_chr15_-_76014318_76014346	0.0325805	GGCAGUG	ENSMUST00000060807.5|Fam83h|ENSMUSG00000046761.6|family with sequence similarity 83, member H
mm10_v2_chr11_-_98329641_98329654	0.032237	GGCAGUG	ENSMUST00000041685.6|Neurod2|ENSMUSG00000038255.6|neurogenic differentiation 2
mm10_v2_chr17_-_43667015_43667163	0.0308558	GGCAGUG	ENSMUST00000024705.4|Slc25a27|ENSMUSG00000023912.9|solute carrier family 25, member 27
mm10_v2_chr14_-_70443442_70443476	0.0306591	GGCAGUG	ENSMUST00000000793.5|Polr3d|ENSMUSG00000000776.6|polymerase (RNA) III (DNA directed) polypeptide D
mm10_v2_chr8_+_4493022_4493199	0.0306183	GGCAGUG	ENSMUST00000177010.2|Cers4|ENSMUSG00000008206.9|ceramide synthase 4 	ENSMUST00000176042.1|Cers4|ENSMUSG00000008206.9|ceramide synthase 4 	ENSMUST00000008350.9|Cers4|ENSMUSG00000008206.9|ceramide synthase 4
mm10_v2_chr9_-_106438207_106438236	0.0304564	GGCAGUG	ENSMUST00000024031.6|Acy1|ENSMUSG00000023262.6|aminoacylase 1
mm10_v2_chr15_-_81858317_81858328	0.0303948	GGCAGUG	ENSMUST00000050467.7|Tob2|ENSMUSG00000048546.7|transducer of ERBB2, 2
mm10_v2_chr11_+_53350783_53350833	0.0298544	GGCAGUG	ENSMUST00000060945.5|Aff4|ENSMUSG00000049470.7|AF4/FMR2 family, member 4
mm10_v2_chr4_+_59805829_59805914	0.0291034	GGCAGUG	ENSMUST00000030080.6|Snx30|ENSMUSG00000028385.8|sorting nexin family member 30
mm10_v2_chr18_-_38211957_38212053	0.0283616	GGCAGUG	ENSMUST00000159405.1|Pcdh1|ENSMUSG00000051375.9|protocadherin 1 	ENSMUST00000160721.1|Pcdh1|ENSMUSG00000051375.9|protocadherin 1
mm10_v2_chr7_+_16401187_16401233	0.0281922	GGCAGUG	ENSMUST00000098789.3|Zc3h4|ENSMUSG00000059273.7|zinc finger CCCH-type containing 4
mm10_v2_chr2_+_65845767_65845799	0.0278978	GGCAGUG	ENSMUST00000122912.1|Csrnp3|ENSMUSG00000044647.10|cysteine-serine-rich nuclear protein 3
mm10_v2_chr1_+_136624901_136624949	0.0275719	GGCAGUG	ENSMUST00000047734.8|Zfp281|ENSMUSG00000041483.8|zinc finger protein 281 	ENSMUST00000112046.1|Zfp281|ENSMUSG00000041483.8|zinc finger protein 281
mm10_v2_chr9_-_85327110_85327128	0.0267844	GGCAGUG	ENSMUST00000034802.8|Fam46a|ENSMUSG00000032265.8|family with sequence similarity 46, member A
mm10_v2_chr15_-_98831498_98831509	0.025834	GGCAGUG	ENSMUST00000168846.1|Prkag1|ENSMUSG00000067713.6|protein kinase, AMP-activated, gamma 1 non-catalytic subunit
mm10_v2_chr10_+_91082940_91083028	0.0258128	GGCAGUG	ENSMUST00000020150.3|Ikbip|ENSMUSG00000019975.5|IKBKB interacting protein
mm10_v2_chr1_-_151428440_151428474	0.0254994	GGCAGUG	ENSMUST00000064771.5|Swt1|ENSMUSG00000052748.8|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
mm10_v2_chr9_-_36797273_36797293	0.02524	GGCAGUG	ENSMUST00000163192.3|Ei24|ENSMUSG00000062762.9|etoposide induced 2.4 mRNA
mm10_v2_chr2_+_20737306_20737321	0.0251739	GGCAGUG	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr7_-_74554474_74554681	0.0248462	GGCAGUG	ENSMUST00000134539.1|Slco3a1|ENSMUSG00000025790.8|solute carrier organic anion transporter family, member 3a1 	ENSMUST00000026897.7|Slco3a1|ENSMUSG00000025790.8|solute carrier organic anion transporter family, member 3a1 	ENSMUST00000098371.2|Slco3a1|ENSMUSG00000025790.8|solute carrier organic anion transporter family, member 3a1
mm10_v2_chr2_+_180967218_180967289	0.0247593	GGCAGUG	ENSMUST00000108862.1|Arfgap1|ENSMUSG00000027575.13|ADP-ribosylation factor GTPase activating protein 1 	ENSMUST00000029092.6|Arfgap1|ENSMUSG00000027575.13|ADP-ribosylation factor GTPase activating protein 1 	ENSMUST00000108861.1|Arfgap1|ENSMUSG00000027575.13|ADP-ribosylation factor GTPase activating protein 1 	ENSMUST00000108860.1|Arfgap1|ENSMUSG00000027575.13|ADP-ribosylation factor GTPase activating protein 1
mm10_v2_chr4_+_108719649_108719649	0.0240378	GGCAGUG	ENSMUST00000178992.1|3110021N24Rik|ENSMUSG00000094958.1|RIKEN cDNA 3110021N24 gene
mm10_v2_chr10_+_127642975_127643034	0.0239053	GGCAGUG	ENSMUST00000092074.5|Stat6|ENSMUSG00000002147.12|signal transducer and activator of transcription 6 	ENSMUST00000120279.1|Stat6|ENSMUSG00000002147.12|signal transducer and activator of transcription 6
mm10_v2_chr5_+_117841839_117841857	0.0238681	GGCAGUG	ENSMUST00000142742.2|Nos1|ENSMUSG00000029361.12|nitric oxide synthase 1, neuronal
mm10_v2_chr3_+_131110350_131110471	0.0234492	GGCAGUG	ENSMUST00000066849.6|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1 	ENSMUST00000106341.2|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1 	ENSMUST00000029611.7|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1
mm10_v2_chr4_-_134245579_134245604	0.02334	GGCAGUG	ENSMUST00000030644.7|Zfp593|ENSMUSG00000028840.10|zinc finger protein 593
mm10_v2_chr5_+_122850186_122850198	0.0233393	GGCAGUG	ENSMUST00000031434.6|Rnf34|ENSMUSG00000029474.6|ring finger protein 34
mm10_v2_chr13_-_8871696_8871749	0.0225163	GGCAGUG	ENSMUST00000054251.6|Wdr37|ENSMUSG00000021147.10|WD repeat domain 37 	ENSMUST00000176813.1|Wdr37|ENSMUSG00000021147.10|WD repeat domain 37
mm10_v2_chr15_-_99820072_99820154	0.0221675	GGCAGUG	ENSMUST00000109024.2|Lima1|ENSMUSG00000023022.7|LIM domain and actin binding 1
mm10_v2_chr16_+_20548577_20548672	0.0218056	GGCAGUG	ENSMUST00000003319.5|Abcf3|ENSMUSG00000003234.9|ATP-binding cassette, sub-family F (GCN20), member 3
mm10_v2_chr8_+_4166556_4166739	0.0217705	GGCAGUG	ENSMUST00000177053.1|Evi5l|ENSMUSG00000011832.9|ecotropic viral integration site 5 like 	ENSMUST00000176149.1|Evi5l|ENSMUSG00000011832.9|ecotropic viral integration site 5 like 	ENSMUST00000176072.1|Evi5l|ENSMUSG00000011832.9|ecotropic viral integration site 5 like 	ENSMUST00000176825.1|Evi5l|ENSMUSG00000011832.9|ecotropic viral integration site 5 like
mm10_v2_chr8_-_111933761_111933816	0.0216159	GGCAGUG	ENSMUST00000034429.7|Tmem231|ENSMUSG00000031951.7|transmembrane protein 231
mm10_v2_chr11_+_5955693_5955821	0.0215614	GGCAGUG	ENSMUST00000002818.8|Ykt6|ENSMUSG00000002741.9|YKT6 homolog (S. Cerevisiae)
mm10_v2_chr11_+_75650501_75650544	0.0215108	GGCAGUG	ENSMUST00000102505.3|Myo1c|ENSMUSG00000017774.13|myosin IC
mm10_v2_chr9_+_77636494_77636528	0.0213038	GGCAGUG	ENSMUST00000057781.7|Klhl31|ENSMUSG00000044938.8|kelch-like 31
mm10_v2_chr11_-_101466222_101466237	0.021299	GGCAGUG	ENSMUST00000040430.7|Vat1|ENSMUSG00000034993.7|vesicle amine transport protein 1 homolog (T californica)
mm10_v2_chr2_+_129800451_129800526	0.0198055	GGCAGUG	ENSMUST00000165413.2|Stk35|ENSMUSG00000037885.12|serine/threonine kinase 35 	ENSMUST00000166282.2|Stk35|ENSMUSG00000037885.12|serine/threonine kinase 35
mm10_v2_chr4_-_25800083_25800146	0.0191854	GGCAGUG	ENSMUST00000084770.4|Fut9|ENSMUSG00000055373.8|fucosyltransferase 9
mm10_v2_chr2_-_30124454_30124470	0.0191384	GGCAGUG	ENSMUST00000044751.8|Zer1|ENSMUSG00000039686.8|zyg-11 related, cell cycle regulator
mm10_v2_chr14_-_122465677_122465677	0.0190218	GGCAGUG	ENSMUST00000039118.6|Zic5|ENSMUSG00000041703.7|zinc finger protein of the cerebellum 5
mm10_v2_chr4_-_127354074_127354086	0.0187545	GGCAGUG	ENSMUST00000106090.1|Gjb4|ENSMUSG00000046623.2|gap junction protein, beta 4 	ENSMUST00000060419.1|Gjb4|ENSMUSG00000046623.2|gap junction protein, beta 4
mm10_v2_chr4_+_57434247_57434368	0.0180945	GGCAGUG	ENSMUST00000102905.1|Palm2|ENSMUSG00000090053.3|paralemmin 2
mm10_v2_chr11_-_23497867_23497962	0.017849	GGCAGUG	ENSMUST00000128559.1|Ahsa2|ENSMUSG00000020288.7|AHA1, activator of heat shock protein ATPase 2 	ENSMUST00000147157.1|Ahsa2|ENSMUSG00000020288.7|AHA1, activator of heat shock protein ATPase 2 	ENSMUST00000109539.1|Ahsa2|ENSMUSG00000020288.7|AHA1, activator of heat shock protein ATPase 2
mm10_v2_chr10_+_80602865_80602904	0.0177935	GGCAGUG	ENSMUST00000038411.4|Adat3|ENSMUSG00000035370.7|adenosine deaminase, tRNA-specific 3 	ENSMUST00000079883.4|Scamp4|ENSMUSG00000078441.4|secretory carrier membrane protein 4
mm10_v2_chr7_-_120095177_120095312	0.0171882	GGCAGUG	ENSMUST00000046993.3|Dnah3|ENSMUSG00000052273.2|dynein, axonemal, heavy chain 3
mm10_v2_chr6_-_136171722_136171849	0.0171676	GGCAGUG	ENSMUST00000053880.6|Grin2b|ENSMUSG00000030209.8|glutamate receptor, ionotropic, NMDA2B (epsilon 2)
mm10_v2_chr1_-_56972437_56972502	0.0171237	GGCAGUG	ENSMUST00000042857.7|Satb2|ENSMUSG00000038331.9|special AT-rich sequence binding protein 2
mm10_v2_chr13_-_54687696_54687809	0.0168411	GGCAGUG	ENSMUST00000177950.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44 	ENSMUST00000146931.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44
mm10_v2_chr15_+_89499598_89499653	0.0158976	GGCAGUG	ENSMUST00000109309.1|Shank3|ENSMUSG00000022623.9|SH3/ankyrin domain gene 3
mm10_v2_chr19_-_4928241_4928287	0.0155696	GGCAGUG	ENSMUST00000025851.3|Dpp3|ENSMUSG00000063904.3|dipeptidylpeptidase 3
mm10_v2_chr1_-_171150588_171150609	0.0154045	GGCAGUG	ENSMUST00000155798.1|Sdhc|ENSMUSG00000058076.6|succinate dehydrogenase complex, subunit C, integral membrane protein 	ENSMUST00000081560.4|Sdhc|ENSMUSG00000058076.6|succinate dehydrogenase complex, subunit C, integral membrane protein 	ENSMUST00000111336.3|Sdhc|ENSMUSG00000058076.6|succinate dehydrogenase complex, subunit C, integral membrane protein
mm10_v2_chr14_-_63543931_63543991	0.0148224	GGCAGUG	ENSMUST00000058679.5|Mtmr9|ENSMUSG00000035078.5|myotubularin related protein 9
mm10_v2_chr1_-_82586781_82586849	0.0147326	GGCAGUG	ENSMUST00000087050.5|Col4a4|ENSMUSG00000067158.8|collagen, type IV, alpha 4
mm10_v2_chr8_-_105827190_105827350	0.0143578	GGCAGUG	ENSMUST00000041400.5|Ranbp10|ENSMUSG00000037415.5|RAN binding protein 10
mm10_v2_chr10_+_11281304_11281357	0.0140205	GGCAGUG	ENSMUST00000129456.1|Fbxo30|ENSMUSG00000047648.7|F-box protein 30
mm10_v2_chr1_-_36558349_36558366	0.0133463	GGCAGUG	ENSMUST00000114991.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C 	ENSMUST00000114992.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
mm10_v2_chr2_-_39190687_39190746	0.0128562	GGCAGUG	ENSMUST00000142872.1|Scai|ENSMUSG00000035236.11|suppressor of cancer cell invasion 	ENSMUST00000038874.5|Scai|ENSMUSG00000035236.11|suppressor of cancer cell invasion
mm10_v2_chr16_-_23988852_23988852	0.0122366	GGCAGUG	ENSMUST00000023151.5|Bcl6|ENSMUSG00000022508.5|B cell leukemia/lymphoma 6
mm10_v2_chr5_+_14514918_14514951	0.0122031	GGCAGUG	ENSMUST00000030691.10|Pclo|ENSMUSG00000061601.9|piccolo (presynaptic cytomatrix protein) 	ENSMUST00000182407.1|Pclo|ENSMUSG00000061601.9|piccolo (presynaptic cytomatrix protein)
mm10_v2_chr11_+_119393060_119393100	0.0118743	GGCAGUG	ENSMUST00000131035.2|Rnf213|ENSMUSG00000070327.7|ring finger protein 213 	ENSMUST00000093902.5|Rnf213|ENSMUSG00000070327.7|ring finger protein 213
mm10_v2_chr1_+_91540553_91540578	0.0117685	GGCAGUG	ENSMUST00000027538.7|Asb1|ENSMUSG00000026311.10|ankyrin repeat and SOCS box-containing 1
mm10_v2_chr2_+_68861433_68861510	0.0114772	GGCAGUG	ENSMUST00000028426.2|Cers6|ENSMUSG00000027035.4|ceramide synthase 6
mm10_v2_chr10_-_81060134_81060204	0.0114611	GGCAGUG	ENSMUST00000005067.5|Sgta|ENSMUSG00000004937.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
mm10_v2_chr1_-_9748376_9748451	0.0109252	GGCAGUG	ENSMUST00000057438.6|Vcpip1|ENSMUSG00000045210.8|valosin containing protein (p97)/p47 complex interacting protein 1
mm10_v2_chr4_+_106316187_106316243	0.0108171	GGCAGUG	ENSMUST00000165709.1|Usp24|ENSMUSG00000028514.9|ubiquitin specific peptidase 24 	ENSMUST00000106798.1|Usp24|ENSMUSG00000028514.9|ubiquitin specific peptidase 24 	ENSMUST00000094933.4|Usp24|ENSMUSG00000028514.9|ubiquitin specific peptidase 24
mm10_v2_chr11_+_116918844_116918888	0.0104626	GGCAGUG	ENSMUST00000103027.3|Mgat5b|ENSMUSG00000043857.10|mannoside acetylglucosaminyltransferase 5, isoenzyme B
mm10_v2_chr4_+_62286441_62286516	0.0104578	GGCAGUG	ENSMUST00000084530.2|Slc31a2|ENSMUSG00000066152.5|solute carrier family 31, member 2
mm10_v2_chr14_+_20294690_20294745	0.00982656	GGCAGUG	ENSMUST00000022343.4|Nudt13|ENSMUSG00000021809.9|nudix (nucleoside diphosphate linked moiety X)-type motif 13
mm10_v2_chr8_+_84021444_84021475	0.00952954	GGCAGUG	ENSMUST00000055077.6|Palm3|ENSMUSG00000047986.6|paralemmin 3
mm10_v2_chr2_+_10372426_10372497	0.00906525	GGCAGUG	ENSMUST00000114864.2|Sfmbt2|ENSMUSG00000061186.9|Scm-like with four mbt domains 2 	ENSMUST00000116594.2|Sfmbt2|ENSMUSG00000061186.9|Scm-like with four mbt domains 2 	ENSMUST00000041105.6|Sfmbt2|ENSMUSG00000061186.9|Scm-like with four mbt domains 2
mm10_v2_chr17_+_25809085_25809171	0.00884994	GGCAGUG	ENSMUST00000045692.7|Fbxl16|ENSMUSG00000025738.7|F-box and leucine-rich repeat protein 16
mm10_v2_chr11_+_95414078_95414243	0.00805965	GGCAGUG	ENSMUST00000107724.2|Spop|ENSMUSG00000057522.9|speckle-type POZ protein 	ENSMUST00000150884.1|Spop|ENSMUSG00000057522.9|speckle-type POZ protein 	ENSMUST00000107722.1|Spop|ENSMUSG00000057522.9|speckle-type POZ protein 	ENSMUST00000127713.1|Spop|ENSMUSG00000057522.9|speckle-type POZ protein
mm10_v2_chr19_+_8741413_8741461	0.00799692	GGCAGUG	ENSMUST00000176381.1|Stx5a|ENSMUSG00000010110.11|syntaxin 5A
mm10_v2_chr3_+_89229046_89229066	0.00776681	GGCAGUG	ENSMUST00000041142.3|Muc1|ENSMUSG00000042784.3|mucin 1, transmembrane
mm10_v2_chr3_-_9004686_9004750	0.00751677	GGCAGUG	ENSMUST00000120143.1|Tpd52|ENSMUSG00000027506.9|tumor protein D52
mm10_v2_chr17_+_46383725_46383792	0.00729636	GGCAGUG	ENSMUST00000113481.1|Zfp318|ENSMUSG00000015597.10|zinc finger protein 318 	ENSMUST00000138127.1|Zfp318|ENSMUSG00000015597.10|zinc finger protein 318
mm10_v2_chr14_-_100149764_100149764	0.0068831	GGCAGUG	ENSMUST00000097079.4|Klf12|ENSMUSG00000072294.4|Kruppel-like factor 12
mm10_v2_chr9_+_109875541_109875591	0.0067	GGCAGUG	ENSMUST00000094324.3|Cdc25a|ENSMUSG00000032477.9|cell division cycle 25A
mm10_v2_chr12_-_85097080_85097091	0.0061432	GGCAGUG	ENSMUST00000177289.2|Prox2|ENSMUSG00000042320.10|prospero homeobox 2
mm10_v2_chr11_+_101176041_101176041	0.00554731	GGCAGUG	ENSMUST00000103109.3|Cntnap1|ENSMUSG00000017167.6|contactin associated protein-like 1
mm10_v2_chr5_-_143269958_143270022	0.00514879	GGCAGUG	ENSMUST00000161448.1|Zfp316|ENSMUSG00000046658.10|zinc finger protein 316
mm10_v2_chr11_+_60931998_60932038	0.00483435	GGCAGUG	ENSMUST00000019076.3|Map2k3|ENSMUSG00000018932.3|mitogen-activated protein kinase kinase 3
mm10_v2_chr3_-_139075178_139075253	0.00349331	GGCAGUG	ENSMUST00000098574.2|Rap1gds1|ENSMUSG00000028149.6|RAP1, GTP-GDP dissociation stimulator 1 	ENSMUST00000029796.6|Rap1gds1|ENSMUSG00000028149.6|RAP1, GTP-GDP dissociation stimulator 1
mm10_v2_chr16_-_26989974_26989974	0.00307091	GGCAGUG	ENSMUST00000089832.4|Gmnc|ENSMUSG00000068428.6|geminin coiled-coil domain containing
mm10_v2_chr6_+_127887582_127887639	0.00260134	GGCAGUG	ENSMUST00000032501.4|Tspan11|ENSMUSG00000030351.4|tetraspanin 11
mm10_v2_chrX_+_71962971_71963013	0.0022606	GGCAGUG	ENSMUST00000048790.6|Prrg3|ENSMUSG00000033361.7|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
mm10_v2_chr8_-_80880479_80880499	0.00207753	GGCAGUG	ENSMUST00000034150.8|Gab1|ENSMUSG00000031714.8|growth factor receptor bound protein 2-associated protein 1
mm10_v2_chr8_+_55940453_55940509	0.00206187	GGCAGUG	ENSMUST00000000275.7|Glra3|ENSMUSG00000038257.8|glycine receptor, alpha 3 subunit
mm10_v2_chrX_-_12673540_12673668	0.00133079	GGCAGUG	ENSMUST00000060108.6|1810030O07Rik|ENSMUSG00000044148.6|RIKEN cDNA 1810030O07 gene
mm10_v2_chr1_-_133753681_133753857	0.000437337	GGCAGUG	ENSMUST00000125659.1|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4 	ENSMUST00000165602.2|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4 	ENSMUST00000048953.7|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4
