mm10_v2_chr12_+_109453455_109453660	2.41166	Gli3_Zic1	ENSMUST00000109844.4|Dlk1|ENSMUSG00000040856.11|delta-like 1 homolog (Drosophila) 	ENSMUST00000109842.2|Dlk1|ENSMUSG00000040856.11|delta-like 1 homolog (Drosophila) 	ENSMUST00000109843.1|Dlk1|ENSMUSG00000040856.11|delta-like 1 homolog (Drosophila) 	ENSMUST00000109846.4|Dlk1|ENSMUSG00000040856.11|delta-like 1 homolog (Drosophila) 	ENSMUST00000173539.1|Dlk1|ENSMUSG00000040856.11|delta-like 1 homolog (Drosophila) 	ENSMUST00000109841.2|Dlk1|ENSMUSG00000040856.11|delta-like 1 homolog (Drosophila)
mm10_v2_chr4_-_148130678_148130706	2.36704	Gli3_Zic1	ENSMUST00000030862.4|Draxin|ENSMUSG00000029005.4|dorsal inhibitory axon guidance protein
mm10_v2_chr1_+_72824482_72824503	2.08837	Gli3_Zic1	ENSMUST00000047328.4|Igfbp2|ENSMUSG00000039323.12|insulin-like growth factor binding protein 2
mm10_v2_chr2_+_157560078_157560130	2.05796	Gli3_Zic1	ENSMUST00000153739.2|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173595.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000109526.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173839.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173041.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173793.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000172487.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000088484.5|Nnat|ENSMUSG00000067786.10|neuronatin
mm10_v2_chr4_+_124657646_124657656	1.83394	Gli3_Zic1	ENSMUST00000053491.7|Pou3f1|ENSMUSG00000090125.2|POU domain, class 3, transcription factor 1
mm10_v2_chr6_+_113531675_113531721	1.69767	Gli3_Zic1	ENSMUST00000036340.5|Fancd2|ENSMUSG00000034023.10|Fanconi anemia, complementation group D2 	ENSMUST00000101051.2|Fancd2|ENSMUSG00000034023.10|Fanconi anemia, complementation group D2
mm10_v2_chr9_-_54661870_54661912	1.68392	Gli3_Zic1	ENSMUST00000034822.5|Acsbg1|ENSMUSG00000032281.5|acyl-CoA synthetase bubblegum family member 1
mm10_v2_chr9_-_54661666_54661716	1.22061	Gli3_Zic1	ENSMUST00000128624.1|Acsbg1|ENSMUSG00000032281.5|acyl-CoA synthetase bubblegum family member 1
mm10_v2_chr15_-_103310425_103310444	1.17535	Gli3_Zic1	ENSMUST00000079824.4|Gpr84|ENSMUSG00000063234.4|G protein-coupled receptor 84
mm10_v2_chr15_-_94404258_94404327	1.14455	Gli3_Zic1	ENSMUST00000035342.4|Adamts20|ENSMUSG00000022449.8|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20 	ENSMUST00000155907.1|Adamts20|ENSMUSG00000022449.8|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20
mm10_v2_chr11_+_72042455_72042481	1.08941	Gli3_Zic1	ENSMUST00000021164.3|Fam64a|ENSMUSG00000020808.3|family with sequence similarity 64, member A
mm10_v2_chr19_-_40271506_40271616	0.913864	Gli3_Zic1	ENSMUST00000068439.6|Pdlim1|ENSMUSG00000055044.6|PDZ and LIM domain 1 (elfin)
mm10_v2_chr18_+_22345089_22345089	0.908765	Gli3_Zic1	ENSMUST00000120223.1|Asxl3|ENSMUSG00000045215.10|additional sex combs like 3 (Drosophila) 	ENSMUST00000097655.3|Asxl3|ENSMUSG00000045215.10|additional sex combs like 3 (Drosophila)
mm10_v2_chr17_-_84790517_84790585	0.889855	Gli3_Zic1	ENSMUST00000112308.2|Lrpprc|ENSMUSG00000024120.6|leucine-rich PPR-motif containing
mm10_v2_chr4_-_117178726_117178754	0.882562	Gli3_Zic1	ENSMUST00000153953.1|Kif2c|ENSMUSG00000028678.7|kinesin family member 2C 	ENSMUST00000106436.1|Kif2c|ENSMUSG00000028678.7|kinesin family member 2C
mm10_v2_chr4_-_68954351_68954397	0.858527	Gli3_Zic1	ENSMUST00000030036.5|Brinp1|ENSMUSG00000028351.5|bone morphogenic protein/retinoic acid inducible neural specific 1
mm10_v2_chr17_-_12851893_12851916	0.777899	Gli3_Zic1	ENSMUST00000162389.1|Mas1|ENSMUSG00000068037.4|MAS1 oncogene 	ENSMUST00000162119.1|Mas1|ENSMUSG00000068037.4|MAS1 oncogene 	ENSMUST00000159223.1|Mas1|ENSMUSG00000068037.4|MAS1 oncogene
mm10_v2_chr7_+_5057161_5057197	0.75547	Gli3_Zic1	ENSMUST00000045543.5|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106
mm10_v2_chr7_+_5056706_5056741	0.752122	Gli3_Zic1	ENSMUST00000144802.1|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106
mm10_v2_chr3_+_68494208_68494268	0.708383	Gli3_Zic1	ENSMUST00000182719.1|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr7_-_109439076_109439083	0.703607	Gli3_Zic1	ENSMUST00000106745.2|Stk33|ENSMUSG00000031027.9|serine/threonine kinase 33 	ENSMUST00000090414.4|Stk33|ENSMUSG00000031027.9|serine/threonine kinase 33
mm10_v2_chr15_+_99074968_99075005	0.666127	Gli3_Zic1	ENSMUST00000039665.6|Troap|ENSMUSG00000032783.8|trophinin associated protein
mm10_v2_chr2_-_113848655_113848744	0.664914	Gli3_Zic1	ENSMUST00000102545.1|Arhgap11a|ENSMUSG00000041219.8|Rho GTPase activating protein 11A 	ENSMUST00000110948.1|Arhgap11a|ENSMUSG00000041219.8|Rho GTPase activating protein 11A
mm10_v2_chr4_+_123233556_123233556	0.66078	Gli3_Zic1	ENSMUST00000040821.4|Heyl|ENSMUSG00000032744.4|hairy/enhancer-of-split related with YRPW motif-like
mm10_v2_chr17_-_25727364_25727426	0.638942	Gli3_Zic1	ENSMUST00000170070.1|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18 	ENSMUST00000048054.7|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18
mm10_v2_chr7_-_4778141_4778144	0.637603	Gli3_Zic1	ENSMUST00000094892.5|Il11|ENSMUSG00000004371.8|interleukin 11
mm10_v2_chr6_-_35308110_35308136	0.633877	Gli3_Zic1	ENSMUST00000031868.4|Slc13a4|ENSMUSG00000029843.4|solute carrier family 13 (sodium/sulfate symporters), member 4
mm10_v2_chr15_+_102296256_102296330	0.626683	Gli3_Zic1	ENSMUST00000064924.4|Espl1|ENSMUSG00000058290.3|extra spindle poles-like 1 (S. cerevisiae)
mm10_v2_chr8_+_123117354_123117379	0.618573	Gli3_Zic1	ENSMUST00000037900.8|Cpne7|ENSMUSG00000034796.8|copine VII
mm10_v2_chr9_-_44735189_44735213	0.604418	Gli3_Zic1	ENSMUST00000034611.8|Phldb1|ENSMUSG00000048537.9|pleckstrin homology-like domain, family B, member 1
mm10_v2_chr2_-_113848601_113848615	0.599666	Gli3_Zic1	ENSMUST00000110949.2|Arhgap11a|ENSMUSG00000041219.8|Rho GTPase activating protein 11A
mm10_v2_chr17_+_34039437_34039481	0.594557	Gli3_Zic1	ENSMUST00000131134.1|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2 	ENSMUST00000087497.4|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2 	ENSMUST00000114255.1|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2 	ENSMUST00000114252.1|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2
mm10_v2_chr11_-_70229677_70229761	0.580836	Gli3_Zic1	ENSMUST00000153449.1|Bcl6b|ENSMUSG00000000317.5|B cell CLL/lymphoma 6, member B 	ENSMUST00000000326.5|Bcl6b|ENSMUSG00000000317.5|B cell CLL/lymphoma 6, member B
mm10_v2_chr11_+_101176041_101176041	0.576529	Gli3_Zic1	ENSMUST00000103109.3|Cntnap1|ENSMUSG00000017167.6|contactin associated protein-like 1
mm10_v2_chr11_+_51619731_51619813	0.574999	Gli3_Zic1	ENSMUST00000127405.1|Nhp2|ENSMUSG00000001056.3|NHP2 ribonucleoprotein
mm10_v2_chr7_-_109438786_109438837	0.574788	Gli3_Zic1	ENSMUST00000121748.1|Stk33|ENSMUSG00000031027.9|serine/threonine kinase 33
mm10_v2_chr3_-_123112810_123112904	0.574618	Gli3_Zic1	ENSMUST00000139160.1|Synpo2|ENSMUSG00000050315.7|synaptopodin 2
mm10_v2_chr13_+_108316395_108316422	0.557317	Gli3_Zic1	ENSMUST00000171178.1|Depdc1b|ENSMUSG00000021697.6|DEP domain containing 1B
mm10_v2_chr17_+_56304313_56304407	0.527768	Gli3_Zic1	ENSMUST00000113035.1|Uhrf1|ENSMUSG00000001228.8|ubiquitin-like, containing PHD and RING finger domains, 1 	ENSMUST00000113039.2|Uhrf1|ENSMUSG00000001228.8|ubiquitin-like, containing PHD and RING finger domains, 1 	ENSMUST00000142387.1|Uhrf1|ENSMUSG00000001228.8|ubiquitin-like, containing PHD and RING finger domains, 1
mm10_v2_chr7_+_27258725_27258815	0.520602	Gli3_Zic1	ENSMUST00000079258.6|Numbl|ENSMUSG00000063160.6|numb-like
mm10_v2_chr4_-_43030440_43030593	0.518762	Gli3_Zic1	ENSMUST00000135660.1|Stoml2|ENSMUSG00000028455.9|stomatin (Epb7.2)-like 2
mm10_v2_chr10_-_34127955_34127980	0.5111	Gli3_Zic1	ENSMUST00000062784.6|Fam26f|ENSMUSG00000046031.6|family with sequence similarity 26, member F
mm10_v2_chr15_+_103503261_103503298	0.511091	Gli3_Zic1	ENSMUST00000023132.3|Pde1b|ENSMUSG00000022489.5|phosphodiesterase 1B, Ca2+-calmodulin dependent
mm10_v2_chr4_+_48585276_48585365	0.506764	Gli3_Zic1	ENSMUST00000123476.1|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr11_-_83462961_83463071	0.494798	Gli3_Zic1	ENSMUST00000021020.6|Mmp28|ENSMUSG00000020682.11|matrix metallopeptidase 28 (epilysin) 	ENSMUST00000119346.1|Mmp28|ENSMUSG00000020682.11|matrix metallopeptidase 28 (epilysin) 	ENSMUST00000103209.3|Mmp28|ENSMUSG00000020682.11|matrix metallopeptidase 28 (epilysin) 	ENSMUST00000108137.2|Mmp28|ENSMUSG00000020682.11|matrix metallopeptidase 28 (epilysin)
mm10_v2_chr15_-_78718113_78718113	0.485393	Gli3_Zic1	ENSMUST00000088592.4|Elfn2|ENSMUSG00000043460.6|leucine rich repeat and fibronectin type III, extracellular 2
mm10_v2_chr3_-_69044697_69044763	0.474839	Gli3_Zic1	ENSMUST00000136512.1|Trim59|ENSMUSG00000034317.8|tripartite motif-containing 59 	ENSMUST00000143454.1|Trim59|ENSMUSG00000034317.8|tripartite motif-containing 59 	ENSMUST00000107802.1|Trim59|ENSMUSG00000034317.8|tripartite motif-containing 59
mm10_v2_chr5_+_3343893_3343945	0.472496	Gli3_Zic1	ENSMUST00000165117.1|Cdk6|ENSMUSG00000040274.5|cyclin-dependent kinase 6
mm10_v2_chr10_-_49788743_49788769	0.471021	Gli3_Zic1	ENSMUST00000105483.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2) 	ENSMUST00000105487.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2)
mm10_v2_chr11_-_119547744_119547759	0.467904	Gli3_Zic1	ENSMUST00000026670.4|Nptx1|ENSMUSG00000025582.4|neuronal pentraxin 1
mm10_v2_chr6_-_119330723_119330800	0.461174	Gli3_Zic1	ENSMUST00000068351.7|Lrtm2|ENSMUSG00000055003.8|leucine-rich repeats and transmembrane domains 2
mm10_v2_chr6_-_148944750_148944826	0.461054	Gli3_Zic1	ENSMUST00000111562.1|Fam60a|ENSMUSG00000039985.8|family with sequence similarity 60, member A 	ENSMUST00000081956.5|Fam60a|ENSMUSG00000039985.8|family with sequence similarity 60, member A
mm10_v2_chr13_-_63565520_63565520	0.457876	Gli3_Zic1	ENSMUST00000021921.5|Ptch1|ENSMUSG00000021466.6|patched homolog 1
mm10_v2_chr15_-_98953541_98953560	0.454549	Gli3_Zic1	ENSMUST00000097014.5|Tuba1a|ENSMUSG00000072235.5|tubulin, alpha 1A
mm10_v2_chr13_-_63431737_63431755	0.452003	Gli3_Zic1	ENSMUST00000073029.5|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C
mm10_v2_chr11_-_116654245_116654325	0.445866	Gli3_Zic1	ENSMUST00000021166.5|Cygb|ENSMUSG00000020810.5|cytoglobin
mm10_v2_chr11_-_34833631_34833663	0.445436	Gli3_Zic1	ENSMUST00000093191.2|Spdl1|ENSMUSG00000069910.2|spindle apparatus coiled-coil protein 1
mm10_v2_chr4_-_136956784_136956871	0.439569	Gli3_Zic1	ENSMUST00000030420.8|Epha8|ENSMUSG00000028661.8|Eph receptor A8
mm10_v2_chr4_-_43031370_43031427	0.434251	Gli3_Zic1	ENSMUST00000138030.1|Stoml2|ENSMUSG00000028455.9|stomatin (Epb7.2)-like 2
mm10_v2_chr4_-_137766474_137766501	0.433655	Gli3_Zic1	ENSMUST00000139951.1|Alpl|ENSMUSG00000028766.4|alkaline phosphatase, liver/bone/kidney
mm10_v2_chr4_-_43031429_43031456	0.431258	Gli3_Zic1	ENSMUST00000136326.1|Stoml2|ENSMUSG00000028455.9|stomatin (Epb7.2)-like 2
mm10_v2_chr7_-_109438998_109439017	0.429037	Gli3_Zic1	ENSMUST00000121378.1|Stk33|ENSMUSG00000031027.9|serine/threonine kinase 33
mm10_v2_chr11_+_49901803_49901895	0.42654	Gli3_Zic1	ENSMUST00000093141.5|Rasgef1c|ENSMUSG00000020374.10|RasGEF domain family, member 1C 	ENSMUST00000093142.5|Rasgef1c|ENSMUSG00000020374.10|RasGEF domain family, member 1C
mm10_v2_chr7_+_99268338_99268388	0.423062	Gli3_Zic1	ENSMUST00000107100.2|Map6|ENSMUSG00000055407.7|microtubule-associated protein 6
mm10_v2_chr15_+_78428564_78428636	0.415092	Gli3_Zic1	ENSMUST00000166142.2|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17 	ENSMUST00000162517.1|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17 	ENSMUST00000089414.4|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17
mm10_v2_chr17_-_45733843_45733848	0.413392	Gli3_Zic1	ENSMUST00000178179.1|1600014C23Rik|ENSMUSG00000094690.1|RIKEN cDNA 1600014C23 gene
mm10_v2_chr15_-_100669496_100669511	0.409983	Gli3_Zic1	ENSMUST00000182814.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2 	ENSMUST00000182068.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chrX_+_74329058_74329076	0.407736	Gli3_Zic1	ENSMUST00000004326.3|Plxna3|ENSMUSG00000031398.7|plexin A3
mm10_v2_chr2_+_31572775_31572841	0.404465	Gli3_Zic1	ENSMUST00000137889.1|Fubp3|ENSMUSG00000026843.9|far upstream element (FUSE) binding protein 3
mm10_v2_chrX_-_167382747_167382760	0.39494	Gli3_Zic1	ENSMUST00000026839.4|Prps2|ENSMUSG00000025742.5|phosphoribosyl pyrophosphate synthetase 2
mm10_v2_chr9_-_114564315_114564369	0.384023	Gli3_Zic1	ENSMUST00000111816.2|Trim71|ENSMUSG00000079259.2|tripartite motif-containing 71
mm10_v2_chr13_-_63431683_63431733	0.378839	Gli3_Zic1	ENSMUST00000160931.1|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C 	ENSMUST00000099444.3|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C 	ENSMUST00000161977.1|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C 	ENSMUST00000163091.1|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C
mm10_v2_chr4_+_42950369_42950445	0.366003	Gli3_Zic1	ENSMUST00000084662.5|Dnajb5|ENSMUSG00000036052.8|DnaJ (Hsp40) homolog, subfamily B, member 5
mm10_v2_chr8_+_123411424_123411562	0.360934	Gli3_Zic1	ENSMUST00000071134.3|Tubb3|ENSMUSG00000062380.3|tubulin, beta 3 class III
mm10_v2_chr18_+_5593566_5593602	0.360889	Gli3_Zic1	ENSMUST00000160910.1|Zeb1|ENSMUSG00000024238.7|zinc finger E-box binding homeobox 1
mm10_v2_chr4_-_154899077_154899135	0.358915	Gli3_Zic1	ENSMUST00000030935.3|Fam213b|ENSMUSG00000029059.3|family with sequence similarity 213, member B 	ENSMUST00000132281.1|Fam213b|ENSMUSG00000029059.3|family with sequence similarity 213, member B
mm10_v2_chr15_+_78428650_78428671	0.354715	Gli3_Zic1	ENSMUST00000159771.1|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17
mm10_v2_chr7_+_100176663_100176680	0.35252	Gli3_Zic1	ENSMUST00000178946.1|Kcne3|ENSMUSG00000035165.7|potassium voltage-gated channel, Isk-related subfamily, gene 3
mm10_v2_chr10_+_80249106_80249124	0.34766	Gli3_Zic1	ENSMUST00000105364.1|Ndufs7|ENSMUSG00000020153.8|NADH dehydrogenase (ubiquinone) Fe-S protein 7
mm10_v2_chrX_-_16911774_16911774	0.346322	Gli3_Zic1	ENSMUST00000040134.7|Ndp|ENSMUSG00000040138.7|Norrie disease (pseudoglioma) (human)
mm10_v2_chr11_-_33163072_33163206	0.344186	Gli3_Zic1	ENSMUST00000093201.6|Npm1|ENSMUSG00000057113.7|nucleophosmin 1 	ENSMUST00000101375.4|Npm1|ENSMUSG00000057113.7|nucleophosmin 1 	ENSMUST00000109354.3|Npm1|ENSMUSG00000057113.7|nucleophosmin 1 	ENSMUST00000075641.3|Npm1|ENSMUSG00000057113.7|nucleophosmin 1
mm10_v2_chr11_-_45955183_45955193	0.342958	Gli3_Zic1	ENSMUST00000109254.1|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr11_-_78245942_78245987	0.340538	Gli3_Zic1	ENSMUST00000002121.4|Supt6|ENSMUSG00000002052.6|suppressor of Ty 6
mm10_v2_chr14_-_54926784_54926805	0.340058	Gli3_Zic1	ENSMUST00000022813.6|Efs|ENSMUSG00000022203.6|embryonal Fyn-associated substrate
mm10_v2_chr9_-_123678782_123678850	0.339152	Gli3_Zic1	ENSMUST00000170591.1|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A 	ENSMUST00000171647.1|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A
mm10_v2_chr2_+_55437100_55437182	0.337365	Gli3_Zic1	ENSMUST00000112633.2|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3 	ENSMUST00000112632.1|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3
mm10_v2_chr2_+_174643534_174643534	0.336434	Gli3_Zic1	ENSMUST00000059452.5|Zfp831|ENSMUSG00000050600.5|zinc finger protein 831
mm10_v2_chr2_-_30801698_30801742	0.334758	Gli3_Zic1	ENSMUST00000050003.8|1700001O22Rik|ENSMUSG00000044320.8|RIKEN cDNA 1700001O22 gene
mm10_v2_chr9_-_123678873_123678885	0.334537	Gli3_Zic1	ENSMUST00000040960.6|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A
mm10_v2_chr6_+_120666388_120666424	0.334386	Gli3_Zic1	ENSMUST00000112686.1|Cecr2|ENSMUSG00000071226.5|cat eye syndrome chromosome region, candidate 2
mm10_v2_chr14_-_37098211_37098311	0.33012	Gli3_Zic1	ENSMUST00000022337.9|Cdhr1|ENSMUSG00000021803.9|cadherin-related family member 1
mm10_v2_chr1_+_129273344_129273470	0.329133	Gli3_Zic1	ENSMUST00000073527.6|Thsd7b|ENSMUSG00000042581.8|thrombospondin, type I, domain containing 7B 	ENSMUST00000040311.7|Thsd7b|ENSMUSG00000042581.8|thrombospondin, type I, domain containing 7B
mm10_v2_chr2_+_174330006_174330126	0.326732	Gli3_Zic1	ENSMUST00000109085.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus 	ENSMUST00000109087.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus 	ENSMUST00000109084.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm10_v2_chr11_-_45955465_45955494	0.324422	Gli3_Zic1	ENSMUST00000011398.6|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr11_+_20543307_20543336	0.323882	Gli3_Zic1	ENSMUST00000093292.4|Sertad2|ENSMUSG00000049800.7|SERTA domain containing 2
mm10_v2_chr13_+_6548154_6548174	0.318914	Gli3_Zic1	ENSMUST00000021611.8|Pitrm1|ENSMUSG00000021193.9|pitrilysin metallepetidase 1
mm10_v2_chr1_-_153332724_153332804	0.318753	Gli3_Zic1	ENSMUST00000027752.8|Lamc1|ENSMUSG00000026478.8|laminin, gamma 1
mm10_v2_chr2_-_59948155_59948216	0.317907	Gli3_Zic1	ENSMUST00000153136.1|Baz2b|ENSMUSG00000026987.10|bromodomain adjacent to zinc finger domain, 2B
mm10_v2_chr9_+_110305185_110305229	0.315891	Gli3_Zic1	ENSMUST00000068071.7|Elp6|ENSMUSG00000054836.8|elongator acetyltransferase complex subunit 6
mm10_v2_chr19_-_38125258_38125321	0.315449	Gli3_Zic1	ENSMUST00000025951.6|Rbp4|ENSMUSG00000024990.6|retinol binding protein 4, plasma
mm10_v2_chr11_-_42000284_42000356	0.311046	Gli3_Zic1	ENSMUST00000109292.2|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 	ENSMUST00000109290.1|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm10_v2_chr15_-_100669512_100669529	0.307363	Gli3_Zic1	ENSMUST00000182574.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2 	ENSMUST00000182775.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chr11_-_102365111_102365280	0.305005	Gli3_Zic1	ENSMUST00000006749.9|Slc4a1|ENSMUSG00000006574.9|solute carrier family 4 (anion exchanger), member 1
mm10_v2_chr8_+_70501116_70501172	0.300952	Gli3_Zic1	ENSMUST00000127983.1|Crlf1|ENSMUSG00000007888.9|cytokine receptor-like factor 1
mm10_v2_chr14_+_4334763_4334763	0.297596	Gli3_Zic1	ENSMUST00000165466.1|2610042L04Rik|ENSMUSG00000079388.3|RIKEN cDNA 2610042L04 gene
mm10_v2_chr2_+_15055274_15055379	0.29574	Gli3_Zic1	ENSMUST00000069870.3|Arl5b|ENSMUSG00000017418.7|ADP-ribosylation factor-like 5B
mm10_v2_chr2_-_91931675_91931688	0.288978	Gli3_Zic1	ENSMUST00000111309.1|Mdk|ENSMUSG00000027239.8|midkine
mm10_v2_chr19_-_38124801_38124816	0.284434	Gli3_Zic1	ENSMUST00000112335.2|Rbp4|ENSMUSG00000024990.6|retinol binding protein 4, plasma
mm10_v2_chr13_-_95618442_95618475	0.282876	Gli3_Zic1	ENSMUST00000059193.5|F2r|ENSMUSG00000048376.5|coagulation factor II (thrombin) receptor
mm10_v2_chr13_+_44729535_44729697	0.281434	Gli3_Zic1	ENSMUST00000174068.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr14_+_70530819_70530847	0.277579	Gli3_Zic1	ENSMUST00000047331.6|Lgi3|ENSMUSG00000033595.6|leucine-rich repeat LGI family, member 3
mm10_v2_chr6_-_52218686_52218716	0.272401	Gli3_Zic1	ENSMUST00000134367.2|Hoxa7|ENSMUSG00000038236.6|homeobox A7
mm10_v2_chr8_+_120002720_120002741	0.27126	Gli3_Zic1	ENSMUST00000108972.3|Crispld2|ENSMUSG00000031825.10|cysteine-rich secretory protein LCCL domain containing 2
mm10_v2_chr4_+_154869585_154869636	0.270382	Gli3_Zic1	ENSMUST00000079269.7|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000163732.1|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000080559.6|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1
mm10_v2_chr5_+_31297551_31297586	0.270247	Gli3_Zic1	ENSMUST00000072228.5|Gckr|ENSMUSG00000059434.5|glucokinase regulatory protein
mm10_v2_chrX_+_137049586_137049654	0.266677	Gli3_Zic1	ENSMUST00000047852.7|Fam199x|ENSMUSG00000042595.7|family with sequence similarity 199, X-linked
mm10_v2_chr10_-_77113676_77113705	0.266361	Gli3_Zic1	ENSMUST00000072755.4|Col18a1|ENSMUSG00000001435.8|collagen, type XVIII, alpha 1 	ENSMUST00000105409.1|Col18a1|ENSMUSG00000001435.8|collagen, type XVIII, alpha 1
mm10_v2_chr8_+_18595131_18595186	0.263952	Gli3_Zic1	ENSMUST00000039412.8|Mcph1|ENSMUSG00000039842.9|microcephaly, primary autosomal recessive 1
mm10_v2_chr16_+_20733104_20733158	0.26045	Gli3_Zic1	ENSMUST00000115423.1|Chrd|ENSMUSG00000006958.7|chordin 	ENSMUST00000007171.6|Chrd|ENSMUSG00000006958.7|chordin
mm10_v2_chr17_+_34894515_34894573	0.259717	Gli3_Zic1	ENSMUST00000052778.8|Zbtb12|ENSMUSG00000049823.8|zinc finger and BTB domain containing 12
mm10_v2_chr4_+_48585135_48585187	0.259193	Gli3_Zic1	ENSMUST00000030032.6|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chrX_+_159303266_159303281	0.258105	Gli3_Zic1	ENSMUST00000112491.1|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3
mm10_v2_chr2_+_102658640_102658669	0.257829	Gli3_Zic1	ENSMUST00000080210.3|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr15_-_56694525_56694554	0.256824	Gli3_Zic1	ENSMUST00000050544.7|Has2|ENSMUSG00000022367.7|hyaluronan synthase 2
mm10_v2_chrX_-_53114530_53114566	0.25548	Gli3_Zic1	ENSMUST00000114843.2|Plac1|ENSMUSG00000061082.5|placental specific protein 1
mm10_v2_chr10_+_80249441_80249468	0.255045	Gli3_Zic1	ENSMUST00000020361.6|Ndufs7|ENSMUSG00000020153.8|NADH dehydrogenase (ubiquinone) Fe-S protein 7
mm10_v2_chr15_-_95528702_95528777	0.254166	Gli3_Zic1	ENSMUST00000166170.1|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr5_-_110779937_110779967	0.251907	Gli3_Zic1	ENSMUST00000112426.1|Pus1|ENSMUSG00000029507.10|pseudouridine synthase 1
mm10_v2_chr2_+_85037212_85037302	0.250954	Gli3_Zic1	ENSMUST00000077798.6|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1
mm10_v2_chr15_-_101940255_101940324	0.240019	Gli3_Zic1	ENSMUST00000023799.7|Krt79|ENSMUSG00000061397.7|keratin 79
mm10_v2_chr8_-_105637403_105637497	0.239063	Gli3_Zic1	ENSMUST00000182046.1|Gm5914|ENSMUSG00000098120.1|predicted gene 5914
mm10_v2_chrX_+_71050160_71050256	0.237689	Gli3_Zic1	ENSMUST00000082088.3|Mamld1|ENSMUSG00000059401.7|mastermind-like domain containing 1 	ENSMUST00000114629.3|Mamld1|ENSMUSG00000059401.7|mastermind-like domain containing 1
mm10_v2_chr6_-_85502980_85503034	0.237278	Gli3_Zic1	ENSMUST00000159062.1|Fbxo41|ENSMUSG00000047013.9|F-box protein 41
mm10_v2_chr1_-_93801840_93801945	0.23692	Gli3_Zic1	ENSMUST00000112890.2|Dtymk|ENSMUSG00000026281.9|deoxythymidylate kinase 	ENSMUST00000027503.7|Dtymk|ENSMUSG00000026281.9|deoxythymidylate kinase
mm10_v2_chr19_+_6384395_6384422	0.234654	Gli3_Zic1	ENSMUST00000035269.8|Pygm|ENSMUSG00000032648.8|muscle glycogen phosphorylase 	ENSMUST00000113483.1|Pygm|ENSMUSG00000032648.8|muscle glycogen phosphorylase
mm10_v2_chr4_+_139193996_139194133	0.233114	Gli3_Zic1	ENSMUST00000030518.9|Capzb|ENSMUSG00000028745.12|capping protein (actin filament) muscle Z-line, beta
mm10_v2_chr17_+_24718088_24718118	0.220428	Gli3_Zic1	ENSMUST00000152407.1|Rps2|ENSMUSG00000044533.9|ribosomal protein S2
mm10_v2_chr7_-_126704816_126704854	0.219336	Gli3_Zic1	ENSMUST00000032949.7|Coro1a|ENSMUSG00000030707.9|coronin, actin binding protein 1A
mm10_v2_chrM_+_7005_7022	0.218762	Gli3_Zic1	ENSMUST00000082405.1|mt-Co2|ENSMUSG00000064354.1|mitochondrially encoded cytochrome c oxidase II
mm10_v2_chr10_+_22158566_22158586	0.217951	Gli3_Zic1	ENSMUST00000181645.1|Raet1e|ENSMUSG00000053219.9|retinoic acid early transcript 1E 	ENSMUST00000105522.2|H60b|ENSMUSG00000075297.4|histocompatibility 60b
mm10_v2_chr9_+_62858085_62858138	0.217916	Gli3_Zic1	ENSMUST00000034777.6|Calml4|ENSMUSG00000032246.7|calmodulin-like 4 	ENSMUST00000163820.1|Calml4|ENSMUSG00000032246.7|calmodulin-like 4
mm10_v2_chrX_-_137038265_137038309	0.217029	Gli3_Zic1	ENSMUST00000113070.2|Slc25a53|ENSMUSG00000044348.8|solute carrier family 25, member 53 	ENSMUST00000113069.2|Slc25a53|ENSMUSG00000044348.8|solute carrier family 25, member 53
mm10_v2_chr13_+_118714678_118714701	0.214601	Gli3_Zic1	ENSMUST00000022246.8|Fgf10|ENSMUSG00000021732.8|fibroblast growth factor 10
mm10_v2_chr7_-_126704736_126704762	0.213926	Gli3_Zic1	ENSMUST00000131415.1|Coro1a|ENSMUSG00000030707.9|coronin, actin binding protein 1A
mm10_v2_chr18_-_43373248_43373272	0.212653	Gli3_Zic1	ENSMUST00000118043.1|Dpysl3|ENSMUSG00000024501.13|dihydropyrimidinase-like 3
mm10_v2_chr11_-_54249640_54249667	0.212399	Gli3_Zic1	ENSMUST00000019060.5|Csf2|ENSMUSG00000018916.5|colony stimulating factor 2 (granulocyte-macrophage)
mm10_v2_chr4_+_43957401_43957496	0.211871	Gli3_Zic1	ENSMUST00000030202.7|Glipr2|ENSMUSG00000028480.8|GLI pathogenesis-related 2
mm10_v2_chr10_+_22645011_22645109	0.21085	Gli3_Zic1	ENSMUST00000042261.4|Slc2a12|ENSMUSG00000037490.5|solute carrier family 2 (facilitated glucose transporter), member 12
mm10_v2_chr1_+_17601893_17601913	0.210836	Gli3_Zic1	ENSMUST00000088476.2|Pi15|ENSMUSG00000067780.2|peptidase inhibitor 15
mm10_v2_chr19_+_8735808_8735864	0.210734	Gli3_Zic1	ENSMUST00000049424.9|Wdr74|ENSMUSG00000042729.9|WD repeat domain 74
mm10_v2_chr2_-_45110241_45110265	0.208714	Gli3_Zic1	ENSMUST00000177302.1|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr13_-_99516537_99516602	0.208579	Gli3_Zic1	ENSMUST00000064762.4|Map1b|ENSMUSG00000052727.5|microtubule-associated protein 1B
mm10_v2_chr2_-_125723387_125723537	0.207494	Gli3_Zic1	ENSMUST00000042246.7|Shc4|ENSMUSG00000035109.8|SHC (Src homology 2 domain containing) family, member 4
mm10_v2_chr1_-_160077918_160077944	0.207215	Gli3_Zic1	ENSMUST00000028061.3|4930562F07Rik|ENSMUSG00000026729.4|RIKEN cDNA 4930562F07 gene
mm10_v2_chr7_+_35119285_35119301	0.204572	Gli3_Zic1	ENSMUST00000042985.9|Cebpa|ENSMUSG00000034957.9|CCAAT/enhancer binding protein (C/EBP), alpha
mm10_v2_chr2_-_144527341_144527424	0.201628	Gli3_Zic1	ENSMUST00000163701.1|Dzank1|ENSMUSG00000037259.9|double zinc ribbon and ankyrin repeat domains 1 	ENSMUST00000081982.5|Dzank1|ENSMUSG00000037259.9|double zinc ribbon and ankyrin repeat domains 1
mm10_v2_chr2_-_45110336_45110487	0.200374	Gli3_Zic1	ENSMUST00000028229.6|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2 	ENSMUST00000152232.1|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr8_+_11728105_11728143	0.192168	Gli3_Zic1	ENSMUST00000110909.2|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7) 	ENSMUST00000033908.6|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7)
mm10_v2_chr10_+_127165118_127165225	0.19155	Gli3_Zic1	ENSMUST00000006914.9|B4galnt1|ENSMUSG00000006731.9|beta-1,4-N-acetyl-galactosaminyl transferase 1
mm10_v2_chr2_-_73529725_73529736	0.189483	Gli3_Zic1	ENSMUST00000094681.4|Wipf1|ENSMUSG00000075284.4|WAS/WASL interacting protein family, member 1
mm10_v2_chr11_+_101331069_101331069	0.189018	Gli3_Zic1	ENSMUST00000017316.6|Aoc3|ENSMUSG00000019326.8|amine oxidase, copper containing 3
mm10_v2_chr1_-_177796451_177796514	0.188899	Gli3_Zic1	ENSMUST00000016105.8|Adss|ENSMUSG00000015961.8|adenylosuccinate synthetase, non muscle
mm10_v2_chr13_+_34162953_34163033	0.186931	Gli3_Zic1	ENSMUST00000124996.1|Psmg4|ENSMUSG00000071451.3|proteasome (prosome, macropain) assembly chaperone 4 	ENSMUST00000147632.1|Psmg4|ENSMUSG00000071451.3|proteasome (prosome, macropain) assembly chaperone 4
mm10_v2_chr3_+_97158767_97158820	0.182727	Gli3_Zic1	ENSMUST00000090759.4|Acp6|ENSMUSG00000028093.9|acid phosphatase 6, lysophosphatidic
mm10_v2_chr7_+_128246812_128246948	0.182147	Gli3_Zic1	ENSMUST00000164710.1|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1 	ENSMUST00000070656.5|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1
mm10_v2_chr6_-_85502858_85502965	0.181791	Gli3_Zic1	ENSMUST00000161546.1|Fbxo41|ENSMUSG00000047013.9|F-box protein 41 	ENSMUST00000161078.1|Fbxo41|ENSMUSG00000047013.9|F-box protein 41
mm10_v2_chr11_+_101246405_101246567	0.17855	Gli3_Zic1	ENSMUST00000122006.1|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2 	ENSMUST00000151830.1|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2
mm10_v2_chr5_-_115300912_115300944	0.173844	Gli3_Zic1	ENSMUST00000112090.1|Dynll1|ENSMUSG00000009013.4|dynein light chain LC8-type 1
mm10_v2_chr4_+_15265798_15265831	0.172946	Gli3_Zic1	ENSMUST00000062684.8|Tmem64|ENSMUSG00000043252.8|transmembrane protein 64
mm10_v2_chr11_-_69920892_69920966	0.172708	Gli3_Zic1	ENSMUST00000152589.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A 	ENSMUST00000108612.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A 	ENSMUST00000108611.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A
mm10_v2_chr2_+_29890534_29890545	0.172659	Gli3_Zic1	ENSMUST00000113764.3|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr4_+_43957678_43957735	0.172327	Gli3_Zic1	ENSMUST00000107855.1|Glipr2|ENSMUSG00000028480.8|GLI pathogenesis-related 2
mm10_v2_chr11_-_116359060_116359103	0.171721	Gli3_Zic1	ENSMUST00000149147.1|Rnf157|ENSMUSG00000052949.8|ring finger protein 157
mm10_v2_chr17_-_32388885_32389116	0.171498	Gli3_Zic1	ENSMUST00000087703.5|Wiz|ENSMUSG00000024050.9|widely-interspaced zinc finger motifs 	ENSMUST00000170603.1|Wiz|ENSMUSG00000024050.9|widely-interspaced zinc finger motifs
mm10_v2_chr5_+_115279666_115279716	0.171056	Gli3_Zic1	ENSMUST00000040421.4|Coq5|ENSMUSG00000041733.4|coenzyme Q5 homolog, methyltransferase (yeast)
mm10_v2_chr9_-_50752348_50752373	0.170842	Gli3_Zic1	ENSMUST00000042790.3|Hspb2|ENSMUSG00000038086.3|heat shock protein 2
mm10_v2_chr2_-_181592733_181592803	0.170411	Gli3_Zic1	ENSMUST00000108789.2|Znf512b|ENSMUSG00000000823.10|zinc finger protein 512B 	ENSMUST00000153998.1|Znf512b|ENSMUSG00000000823.10|zinc finger protein 512B
mm10_v2_chr17_-_28350747_28350820	0.168627	Gli3_Zic1	ENSMUST00000080572.7|Tead3|ENSMUSG00000002249.11|TEA domain family member 3 	ENSMUST00000156862.1|Tead3|ENSMUSG00000002249.11|TEA domain family member 3
mm10_v2_chr7_+_73391160_73391296	0.16845	Gli3_Zic1	ENSMUST00000128471.1|Rgma|ENSMUSG00000070509.9|RGM domain family, member A
mm10_v2_chr2_+_181187247_181187347	0.168024	Gli3_Zic1	ENSMUST00000016488.6|Ppdpf|ENSMUSG00000016344.8|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene 	ENSMUST00000108841.1|Ppdpf|ENSMUSG00000016344.8|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene
mm10_v2_chr11_+_100415722_100415766	0.167945	Gli3_Zic1	ENSMUST00000107400.2|Fkbp10|ENSMUSG00000001555.4|FK506 binding protein 10
mm10_v2_chr14_+_84443553_84443568	0.166406	Gli3_Zic1	ENSMUST00000071370.5|Pcdh17|ENSMUSG00000035566.6|protocadherin 17
mm10_v2_chr12_+_24498570_24498587	0.165172	Gli3_Zic1	ENSMUST00000075954.7|Taf1b|ENSMUSG00000059669.7|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B
mm10_v2_chr16_-_85803106_85803121	0.164535	Gli3_Zic1	ENSMUST00000023610.8|Adamts1|ENSMUSG00000022893.8|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1
mm10_v2_chr5_-_37824580_37824584	0.164136	Gli3_Zic1	ENSMUST00000063116.9|Msx1|ENSMUSG00000048450.10|msh homeobox 1
mm10_v2_chr17_-_24650270_24650311	0.163595	Gli3_Zic1	ENSMUST00000002572.4|Slc9a3r2|ENSMUSG00000002504.8|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm10_v2_chr7_+_45017953_45018009	0.161402	Gli3_Zic1	ENSMUST00000044111.7|Rras|ENSMUSG00000038387.7|Harvey rat sarcoma oncogene, subgroup R
mm10_v2_chr1_+_75360321_75360338	0.160984	Gli3_Zic1	ENSMUST00000027409.9|Des|ENSMUSG00000026208.9|desmin
mm10_v2_chr4_+_42949814_42949923	0.159331	Gli3_Zic1	ENSMUST00000037872.3|Dnajb5|ENSMUSG00000036052.8|DnaJ (Hsp40) homolog, subfamily B, member 5 	ENSMUST00000098112.2|Dnajb5|ENSMUSG00000036052.8|DnaJ (Hsp40) homolog, subfamily B, member 5
mm10_v2_chr10_+_63457505_63457539	0.159089	Gli3_Zic1	ENSMUST00000105440.1|Ctnna3|ENSMUSG00000060843.5|catenin (cadherin associated protein), alpha 3
mm10_v2_chr7_+_128246953_128246993	0.158605	Gli3_Zic1	ENSMUST00000167965.1|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1
mm10_v2_chr3_+_27984145_27984314	0.158017	Gli3_Zic1	ENSMUST00000067757.4|Pld1|ENSMUSG00000027695.10|phospholipase D1
mm10_v2_chr7_+_3390629_3390707	0.156133	Gli3_Zic1	ENSMUST00000182222.1|Cacng8|ENSMUSG00000053395.9|calcium channel, voltage-dependent, gamma subunit 8
mm10_v2_chr5_-_115300957_115300999	0.154555	Gli3_Zic1	ENSMUST00000009157.3|Dynll1|ENSMUSG00000009013.4|dynein light chain LC8-type 1
mm10_v2_chr11_+_95843226_95843239	0.154394	Gli3_Zic1	ENSMUST00000107709.1|Gngt2|ENSMUSG00000038811.7|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
mm10_v2_chr11_+_101246960_101247093	0.153698	Gli3_Zic1	ENSMUST00000107282.3|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2
mm10_v2_chr13_+_44730726_44730838	0.153024	Gli3_Zic1	ENSMUST00000173704.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2 	ENSMUST00000044608.7|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2 	ENSMUST00000173367.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr11_+_50237002_50237014	0.152382	Gli3_Zic1	ENSMUST00000180443.1|Gm26542|ENSMUSG00000097887.1|predicted gene, 26542
mm10_v2_chr3_+_92288566_92288566	0.152319	Gli3_Zic1	ENSMUST00000090872.4|Sprr2a3|ENSMUSG00000074445.2|small proline-rich protein 2A3
mm10_v2_chr9_+_31386187_31386235	0.151268	Gli3_Zic1	ENSMUST00000086167.5|Nfrkb|ENSMUSG00000042185.7|nuclear factor related to kappa B binding protein
mm10_v2_chr9_-_110743653_110743686	0.151262	Gli3_Zic1	ENSMUST00000166716.1|Pth1r|ENSMUSG00000032492.8|parathyroid hormone 1 receptor
mm10_v2_chr3_-_145032765_145032781	0.15119	Gli3_Zic1	ENSMUST00000029919.5|Clca3|ENSMUSG00000028255.5|chloride channel calcium activated 3
mm10_v2_chr9_-_56418023_56418052	0.150669	Gli3_Zic1	ENSMUST00000061552.8|C230081A13Rik|ENSMUSG00000074305.3|RIKEN cDNA C230081A13 gene
mm10_v2_chr11_+_96282648_96282725	0.150602	Gli3_Zic1	ENSMUST00000168043.1|Hoxb8|ENSMUSG00000056648.4|homeobox B8
mm10_v2_chr11_-_86544754_86544805	0.149657	Gli3_Zic1	ENSMUST00000138810.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000058286.2|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000154617.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1
mm10_v2_chr13_+_54071815_54071859	0.14714	Gli3_Zic1	ENSMUST00000021930.8|Sfxn1|ENSMUSG00000021474.8|sideroflexin 1
mm10_v2_chr8_+_105170668_105170686	0.14547	Gli3_Zic1	ENSMUST00000109395.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000109394.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000052209.2|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000109392.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta
mm10_v2_chr7_-_102494773_102494773	0.145066	Gli3_Zic1	ENSMUST00000058750.3|Olfr545|ENSMUSG00000044824.5|olfactory receptor 545
mm10_v2_chr11_-_58801944_58801968	0.144978	Gli3_Zic1	ENSMUST00000094156.4|Fam183b|ENSMUSG00000049154.5|family with sequence similarity 183, member B 	ENSMUST00000060581.3|Fam183b|ENSMUSG00000049154.5|family with sequence similarity 183, member B
mm10_v2_chr9_+_45906513_45906569	0.144546	Gli3_Zic1	ENSMUST00000039059.6|Pcsk7|ENSMUSG00000035382.8|proprotein convertase subtilisin/kexin type 7
mm10_v2_chr9_-_110117379_110117445	0.143631	Gli3_Zic1	ENSMUST00000111991.2|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000149199.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000035056.7|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000148287.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000127744.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr4_-_128962420_128962449	0.140649	Gli3_Zic1	ENSMUST00000119354.1|Adc|ENSMUSG00000028789.10|arginine decarboxylase 	ENSMUST00000106068.1|Adc|ENSMUSG00000028789.10|arginine decarboxylase 	ENSMUST00000030581.3|Adc|ENSMUSG00000028789.10|arginine decarboxylase
mm10_v2_chr3_-_95357156_95357211	0.139529	Gli3_Zic1	ENSMUST00000107171.3|Setdb1|ENSMUSG00000015697.8|SET domain, bifurcated 1 	ENSMUST00000015841.5|Setdb1|ENSMUSG00000015697.8|SET domain, bifurcated 1 	ENSMUST00000107170.2|Setdb1|ENSMUSG00000015697.8|SET domain, bifurcated 1
mm10_v2_chr2_-_150668198_150668258	0.137108	Gli3_Zic1	ENSMUST00000028944.3|Acss1|ENSMUSG00000027452.5|acyl-CoA synthetase short-chain family member 1
mm10_v2_chr3_-_116253467_116253484	0.136775	Gli3_Zic1	ENSMUST00000090473.5|Gpr88|ENSMUSG00000068696.5|G-protein coupled receptor 88
mm10_v2_chr18_-_38929148_38929168	0.135633	Gli3_Zic1	ENSMUST00000134864.1|Fgf1|ENSMUSG00000036585.9|fibroblast growth factor 1
mm10_v2_chrX_+_7790012_7790029	0.135495	Gli3_Zic1	ENSMUST00000140540.1|Gripap1|ENSMUSG00000031153.10|GRIP1 associated protein 1
mm10_v2_chr5_-_146963742_146963805	0.134071	Gli3_Zic1	ENSMUST00000125217.1|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3 	ENSMUST00000110564.1|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3 	ENSMUST00000066675.3|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3 	ENSMUST00000016654.2|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3 	ENSMUST00000110566.1|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3 	ENSMUST00000140526.1|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3
mm10_v2_chr17_-_74294834_74294883	0.133993	Gli3_Zic1	ENSMUST00000078459.6|Memo1|ENSMUSG00000058704.7|mediator of cell motility 1
mm10_v2_chr9_-_69760924_69760940	0.13383	Gli3_Zic1	ENSMUST00000071281.4|Foxb1|ENSMUSG00000059246.4|forkhead box B1
mm10_v2_chr8_+_13757663_13757714	0.132829	Gli3_Zic1	ENSMUST00000043962.8|Cdc16|ENSMUSG00000038416.8|CDC16 cell division cycle 16
mm10_v2_chr7_+_57591147_57591191	0.132721	Gli3_Zic1	ENSMUST00000039697.7|Gabrb3|ENSMUSG00000033676.7|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm10_v2_chr11_+_70000578_70000624	0.132076	Gli3_Zic1	ENSMUST00000019362.8|Dvl2|ENSMUSG00000020888.10|dishevelled 2, dsh homolog (Drosophila)
mm10_v2_chrX_+_7789986_7790008	0.13105	Gli3_Zic1	ENSMUST00000136930.1|Gripap1|ENSMUSG00000031153.10|GRIP1 associated protein 1 	ENSMUST00000115675.2|Gripap1|ENSMUSG00000031153.10|GRIP1 associated protein 1 	ENSMUST00000101694.3|Gripap1|ENSMUSG00000031153.10|GRIP1 associated protein 1
mm10_v2_chr6_+_28423539_28423640	0.130074	Gli3_Zic1	ENSMUST00000020717.5|Arf5|ENSMUSG00000020440.7|ADP-ribosylation factor 5 	ENSMUST00000169841.1|Arf5|ENSMUSG00000020440.7|ADP-ribosylation factor 5
mm10_v2_chr15_-_89379246_89379262	0.127869	Gli3_Zic1	ENSMUST00000049968.7|Odf3b|ENSMUSG00000047394.7|outer dense fiber of sperm tails 3B
mm10_v2_chr16_-_30550560_30550594	0.127683	Gli3_Zic1	ENSMUST00000140402.1|Tmem44|ENSMUSG00000022537.11|transmembrane protein 44
mm10_v2_chr2_+_29890063_29890081	0.127683	Gli3_Zic1	ENSMUST00000028128.6|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr6_-_101377897_101378016	0.127509	Gli3_Zic1	ENSMUST00000075994.6|Pdzrn3|ENSMUSG00000035357.10|PDZ domain containing RING finger 3
mm10_v2_chr4_-_16163611_16163647	0.127029	Gli3_Zic1	ENSMUST00000037035.5|Ripk2|ENSMUSG00000041135.9|receptor (TNFRSF)-interacting serine-threonine kinase 2
mm10_v2_chr2_+_29890096_29890156	0.126693	Gli3_Zic1	ENSMUST00000113762.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000113765.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr4_-_151108454_151108576	0.125279	Gli3_Zic1	ENSMUST00000105670.1|Camta1|ENSMUSG00000014592.13|calmodulin binding transcription activator 1
mm10_v2_chr8_+_122422020_122422020	0.124214	Gli3_Zic1	ENSMUST00000050963.3|Il17c|ENSMUSG00000046108.3|interleukin 17C
mm10_v2_chr13_+_44729794_44729807	0.123777	Gli3_Zic1	ENSMUST00000172830.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr3_+_95624971_95625021	0.123564	Gli3_Zic1	ENSMUST00000058230.6|Ensa|ENSMUSG00000038619.6|endosulfine alpha 	ENSMUST00000037983.4|Ensa|ENSMUSG00000038619.6|endosulfine alpha
mm10_v2_chr11_-_69921057_69921085	0.123205	Gli3_Zic1	ENSMUST00000108609.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A 	ENSMUST00000108608.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A 	ENSMUST00000164359.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A
mm10_v2_chr17_+_27655643_27655659	0.122784	Gli3_Zic1	ENSMUST00000114872.1|Pacsin1|ENSMUSG00000040276.8|protein kinase C and casein kinase substrate in neurons 1
mm10_v2_chr15_-_100669535_100669560	0.121966	Gli3_Zic1	ENSMUST00000183211.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chr16_+_44724271_44724325	0.121269	Gli3_Zic1	ENSMUST00000048788.7|BC027231|ENSMUSG00000036208.7|cDNA sequence BC027231
mm10_v2_chr17_+_27655572_27655622	0.121247	Gli3_Zic1	ENSMUST00000045896.3|Pacsin1|ENSMUSG00000040276.8|protein kinase C and casein kinase substrate in neurons 1
mm10_v2_chr18_+_86394952_86394968	0.120898	Gli3_Zic1	ENSMUST00000058829.2|Neto1|ENSMUSG00000050321.2|neuropilin (NRP) and tolloid (TLL)-like 1
mm10_v2_chr17_+_24669730_24669752	0.120298	Gli3_Zic1	ENSMUST00000047179.5|Zfp598|ENSMUSG00000041130.9|zinc finger protein 598
mm10_v2_chr1_-_191907527_191907527	0.120131	Gli3_Zic1	ENSMUST00000069573.5|1700034H15Rik|ENSMUSG00000055833.8|RIKEN cDNA 1700034H15 gene
mm10_v2_chr7_-_140116395_140116476	0.119885	Gli3_Zic1	ENSMUST00000026538.6|Echs1|ENSMUSG00000025465.6|enoyl Coenzyme A hydratase, short chain, 1, mitochondrial
mm10_v2_chr4_-_41517326_41517337	0.119041	Gli3_Zic1	ENSMUST00000030152.6|1110017D15Rik|ENSMUSG00000028441.6|RIKEN cDNA 1110017D15 gene 	ENSMUST00000095126.4|1110017D15Rik|ENSMUSG00000028441.6|RIKEN cDNA 1110017D15 gene
mm10_v2_chr7_+_83891983_83892033	0.118558	Gli3_Zic1	ENSMUST00000094215.3|Mesdc2|ENSMUSG00000038503.8|mesoderm development candidate 2 	ENSMUST00000130103.1|Mesdc2|ENSMUSG00000038503.8|mesoderm development candidate 2
mm10_v2_chr5_-_138155694_138155744	0.114828	Gli3_Zic1	ENSMUST00000132318.1|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113 	ENSMUST00000049393.8|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113
mm10_v2_chr4_+_106561027_106561038	0.113461	Gli3_Zic1	ENSMUST00000047973.3|Dhcr24|ENSMUSG00000034926.3|24-dehydrocholesterol reductase
mm10_v2_chrX_+_163908982_163909017	0.11151	Gli3_Zic1	ENSMUST00000069041.8|Ap1s2|ENSMUSG00000031367.9|adaptor-related protein complex 1, sigma 2 subunit
mm10_v2_chr8_+_4243264_4243387	0.111451	Gli3_Zic1	ENSMUST00000110996.1|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7
mm10_v2_chr6_-_142702259_142702290	0.107929	Gli3_Zic1	ENSMUST00000073173.5|Abcc9|ENSMUSG00000030249.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 9 	ENSMUST00000111771.1|Abcc9|ENSMUSG00000030249.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 9 	ENSMUST00000087527.4|Abcc9|ENSMUSG00000030249.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 9 	ENSMUST00000100827.2|Abcc9|ENSMUSG00000030249.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 9
mm10_v2_chr17_-_34028044_34028076	0.105591	Gli3_Zic1	ENSMUST00000045467.7|H2-Ke6|ENSMUSG00000073422.4|H2-K region expressed gene 6 	ENSMUST00000114303.3|H2-Ke6|ENSMUSG00000073422.4|H2-K region expressed gene 6
mm10_v2_chr10_+_40349265_40349387	0.105035	Gli3_Zic1	ENSMUST00000044672.4|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19 	ENSMUST00000095743.2|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19
mm10_v2_chr1_+_135729147_135729234	0.104842	Gli3_Zic1	ENSMUST00000027677.7|Csrp1|ENSMUSG00000026421.8|cysteine and glycine-rich protein 1
mm10_v2_chr16_-_5255923_5255983	0.10463	Gli3_Zic1	ENSMUST00000139584.1|Fam86|ENSMUSG00000022544.7|family with sequence similarity 86 	ENSMUST00000064635.5|Fam86|ENSMUSG00000022544.7|family with sequence similarity 86
mm10_v2_chr1_+_63730614_63730657	0.10356	Gli3_Zic1	ENSMUST00000027103.6|Fastkd2|ENSMUSG00000025962.9|FAST kinase domains 2
mm10_v2_chr11_+_63061599_63061676	0.103431	Gli3_Zic1	ENSMUST00000035732.4|Tekt3|ENSMUSG00000042189.5|tektin 3
mm10_v2_chr8_+_46492789_46492832	0.10237	Gli3_Zic1	ENSMUST00000110371.1|Acsl1|ENSMUSG00000018796.6|acyl-CoA synthetase long-chain family member 1
mm10_v2_chr13_-_14613017_14613056	0.101546	Gli3_Zic1	ENSMUST00000015816.3|Mrpl32|ENSMUSG00000015672.3|mitochondrial ribosomal protein L32
mm10_v2_chr17_+_35135463_35135539	0.10045	Gli3_Zic1	ENSMUST00000173535.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000173952.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chr19_+_38481057_38481121	0.100366	Gli3_Zic1	ENSMUST00000182481.1|Plce1|ENSMUSG00000024998.11|phospholipase C, epsilon 1
mm10_v2_chr3_-_95904683_95904692	0.10024	Gli3_Zic1	ENSMUST00000147962.1|Car14|ENSMUSG00000038526.8|carbonic anhydrase 14 	ENSMUST00000036181.8|Car14|ENSMUSG00000038526.8|carbonic anhydrase 14
mm10_v2_chrX_-_73966329_73966376	0.0997507	Gli3_Zic1	ENSMUST00000114372.2|Hcfc1|ENSMUSG00000031386.8|host cell factor C1 	ENSMUST00000033761.6|Hcfc1|ENSMUSG00000031386.8|host cell factor C1
mm10_v2_chr3_+_95427575_95427671	0.0983184	Gli3_Zic1	ENSMUST00000181809.1|Gm4349|ENSMUSG00000097532.1|predicted gene 4349
mm10_v2_chr2_+_29889785_29889895	0.0969811	Gli3_Zic1	ENSMUST00000113763.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000113757.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000113756.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000133233.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000113759.2|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000113755.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000137558.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000046571.7|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr18_-_38601268_38601355	0.0958585	Gli3_Zic1	ENSMUST00000025295.6|Spry4|ENSMUSG00000024427.6|sprouty homolog 4 (Drosophila)
mm10_v2_chr11_+_73018986_73019047	0.095852	Gli3_Zic1	ENSMUST00000092937.6|Camkk1|ENSMUSG00000020785.11|calcium/calmodulin-dependent protein kinase kinase 1, alpha
mm10_v2_chr5_+_144768536_144768552	0.0956639	Gli3_Zic1	ENSMUST00000128550.1|Trrap|ENSMUSG00000045482.9|transformation/transcription domain-associated protein
mm10_v2_chr2_+_118111876_118111899	0.0954751	Gli3_Zic1	ENSMUST00000039559.8|Thbs1|ENSMUSG00000040152.8|thrombospondin 1
mm10_v2_chr2_-_119477613_119477705	0.094416	Gli3_Zic1	ENSMUST00000110808.1|Ino80|ENSMUSG00000034154.9|INO80 homolog (S. cerevisiae) 	ENSMUST00000049920.7|Ino80|ENSMUSG00000034154.9|INO80 homolog (S. cerevisiae)
mm10_v2_chr7_-_80401707_80401754	0.0944051	Gli3_Zic1	ENSMUST00000120753.1|Furin|ENSMUSG00000030530.9|furin (paired basic amino acid cleaving enzyme)
mm10_v2_chrX_+_10717390_10717450	0.0943529	Gli3_Zic1	ENSMUST00000115524.1|Mid1ip1|ENSMUSG00000008035.6|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish)) 	ENSMUST00000008179.6|Mid1ip1|ENSMUSG00000008035.6|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
mm10_v2_chr7_-_135528645_135528661	0.0940613	Gli3_Zic1	ENSMUST00000053716.7|Clrn3|ENSMUSG00000050866.7|clarin 3
mm10_v2_chr9_-_110117303_110117353	0.0931843	Gli3_Zic1	ENSMUST00000136969.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr1_+_15287259_15287259	0.091748	Gli3_Zic1	ENSMUST00000175681.1|Kcnb2|ENSMUSG00000092083.3|potassium voltage gated channel, Shab-related subfamily, member 2
mm10_v2_chr2_+_29889720_29889753	0.0912879	Gli3_Zic1	ENSMUST00000113767.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr5_-_145140238_145140281	0.0900905	Gli3_Zic1	ENSMUST00000031627.8|Pdap1|ENSMUSG00000029623.8|PDGFA associated protein 1
mm10_v2_chr11_-_113710017_113710061	0.0897207	Gli3_Zic1	ENSMUST00000018871.1|Cpsf4l|ENSMUSG00000018727.13|cleavage and polyadenylation specific factor 4-like
mm10_v2_chr11_-_98149551_98149621	0.0844178	Gli3_Zic1	ENSMUST00000103143.3|Fbxl20|ENSMUSG00000020883.12|F-box and leucine-rich repeat protein 20
mm10_v2_chr4_+_123183456_123183601	0.0837667	Gli3_Zic1	ENSMUST00000126995.1|Hpcal4|ENSMUSG00000046093.3|hippocalcin-like 4
mm10_v2_chr13_+_109685994_109686156	0.0835964	Gli3_Zic1	ENSMUST00000074103.5|Pde4d|ENSMUSG00000021699.11|phosphodiesterase 4D, cAMP specific
mm10_v2_chr1_-_181211437_181211552	0.0822175	Gli3_Zic1	ENSMUST00000162963.1|Wdr26|ENSMUSG00000038733.7|WD repeat domain 26 	ENSMUST00000162819.1|Wdr26|ENSMUSG00000038733.7|WD repeat domain 26
mm10_v2_chr5_+_114380591_114380628	0.081789	Gli3_Zic1	ENSMUST00000074002.5|Ube3b|ENSMUSG00000029577.7|ubiquitin protein ligase E3B
mm10_v2_chr11_+_51289920_51290011	0.0817189	Gli3_Zic1	ENSMUST00000102765.2|Col23a1|ENSMUSG00000063564.7|collagen, type XXIII, alpha 1
mm10_v2_chr2_+_181497165_181497216	0.0816478	Gli3_Zic1	ENSMUST00000149163.1|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2 	ENSMUST00000000844.8|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2 	ENSMUST00000184849.1|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2 	ENSMUST00000108800.1|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2 	ENSMUST00000069712.2|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2
mm10_v2_chr1_+_167598384_167598411	0.0796366	Gli3_Zic1	ENSMUST00000015987.3|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chr11_-_102230091_102230124	0.0794718	Gli3_Zic1	ENSMUST00000008999.5|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5
mm10_v2_chr9_-_45906369_45906437	0.0790049	Gli3_Zic1	ENSMUST00000161187.1|Rnf214|ENSMUSG00000042790.9|ring finger protein 214
mm10_v2_chr6_-_40544977_40544977	0.0788425	Gli3_Zic1	ENSMUST00000089490.2|Olfr461|ENSMUSG00000068259.2|olfactory receptor 461
mm10_v2_chr5_-_32746272_32746313	0.0788255	Gli3_Zic1	ENSMUST00000120591.1|Pisd|ENSMUSG00000023452.12|phosphatidylserine decarboxylase
mm10_v2_chr4_+_48045144_48045160	0.0779576	Gli3_Zic1	ENSMUST00000030025.3|Nr4a3|ENSMUSG00000028341.3|nuclear receptor subfamily 4, group A, member 3
mm10_v2_chr2_-_104816696_104816792	0.0772362	Gli3_Zic1	ENSMUST00000117237.1|Qser1|ENSMUSG00000074994.4|glutamine and serine rich 1
mm10_v2_chr13_+_81783220_81783307	0.0768966	Gli3_Zic1	ENSMUST00000022009.8|Cetn3|ENSMUSG00000021537.8|centrin 3
mm10_v2_chr2_+_49451486_49451559	0.0757274	Gli3_Zic1	ENSMUST00000092123.4|Epc2|ENSMUSG00000069495.6|enhancer of polycomb homolog 2 (Drosophila)
mm10_v2_chr3_-_30509681_30509746	0.0754901	Gli3_Zic1	ENSMUST00000173495.1|Mecom|ENSMUSG00000027684.10|MDS1 and EVI1 complex locus
mm10_v2_chr1_+_97770158_97770209	0.0744246	Gli3_Zic1	ENSMUST00000112844.3|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1 	ENSMUST00000112842.1|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1 	ENSMUST00000027571.6|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1
mm10_v2_chr17_+_35135695_35135781	0.073282	Gli3_Zic1	ENSMUST00000174478.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000174281.2|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000173550.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chr10_+_87521920_87521937	0.0724865	Gli3_Zic1	ENSMUST00000142088.1|Pah|ENSMUSG00000020051.9|phenylalanine hydroxylase
mm10_v2_chr2_+_181497223_181497244	0.0713862	Gli3_Zic1	ENSMUST00000108799.3|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2
mm10_v2_chr1_-_64121456_64121491	0.0711618	Gli3_Zic1	ENSMUST00000142009.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous) 	ENSMUST00000114086.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr9_-_58158498_58158554	0.0706626	Gli3_Zic1	ENSMUST00000168864.2|Islr|ENSMUSG00000037206.8|immunoglobulin superfamily containing leucine-rich repeat
mm10_v2_chr11_+_98960412_98960485	0.0705528	Gli3_Zic1	ENSMUST00000107473.2|Rara|ENSMUSG00000037992.10|retinoic acid receptor, alpha
mm10_v2_chr11_-_102230127_102230166	0.0705422	Gli3_Zic1	ENSMUST00000107150.1|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5 	ENSMUST00000156337.1|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5 	ENSMUST00000107151.2|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5 	ENSMUST00000107152.2|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5
mm10_v2_chrX_-_166585679_166585737	0.0699786	Gli3_Zic1	ENSMUST00000000412.2|Egfl6|ENSMUSG00000000402.2|EGF-like-domain, multiple 6
mm10_v2_chr5_-_32746317_32746411	0.0694906	Gli3_Zic1	ENSMUST00000135248.1|Pisd|ENSMUSG00000023452.12|phosphatidylserine decarboxylase
mm10_v2_chr5_-_125058367_125058411	0.0688291	Gli3_Zic1	ENSMUST00000134404.1|Ncor2|ENSMUSG00000029478.10|nuclear receptor co-repressor 2
mm10_v2_chr6_-_28830345_28830345	0.0686611	Gli3_Zic1	ENSMUST00000171353.1|Lrrc4|ENSMUSG00000049939.5|leucine rich repeat containing 4
mm10_v2_chr7_+_66689889_66689980	0.0683313	Gli3_Zic1	ENSMUST00000153007.1|Lins|ENSMUSG00000053091.10|lines homolog (Drosophila) 	ENSMUST00000177726.1|Lins|ENSMUSG00000053091.10|lines homolog (Drosophila) 	ENSMUST00000121777.2|Lins|ENSMUSG00000053091.10|lines homolog (Drosophila) 	ENSMUST00000150071.1|Lins|ENSMUSG00000053091.10|lines homolog (Drosophila) 	ENSMUST00000077967.6|Lins|ENSMUSG00000053091.10|lines homolog (Drosophila)
mm10_v2_chr18_-_67724560_67724599	0.0683282	Gli3_Zic1	ENSMUST00000120934.1|Ptpn2|ENSMUSG00000024539.11|protein tyrosine phosphatase, non-receptor type 2 	ENSMUST00000025420.7|Ptpn2|ENSMUSG00000024539.11|protein tyrosine phosphatase, non-receptor type 2 	ENSMUST00000122412.1|Ptpn2|ENSMUSG00000024539.11|protein tyrosine phosphatase, non-receptor type 2
mm10_v2_chr18_+_52767994_52768149	0.0678993	Gli3_Zic1	ENSMUST00000025413.7|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin) 	ENSMUST00000163742.2|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin) 	ENSMUST00000178011.1|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin)
mm10_v2_chr11_-_75925891_75925946	0.0675436	Gli3_Zic1	ENSMUST00000021208.4|Rph3al|ENSMUSG00000020847.9|rabphilin 3A-like (without C2 domains)
mm10_v2_chr4_-_120287349_120287349	0.0673992	Gli3_Zic1	ENSMUST00000102656.3|Foxo6|ENSMUSG00000052135.8|forkhead box O6
mm10_v2_chr1_-_128103016_128103053	0.0669931	Gli3_Zic1	ENSMUST00000097597.2|Zranb3|ENSMUSG00000036086.10|zinc finger, RAN-binding domain containing 3
mm10_v2_chr8_-_105295934_105296098	0.0662835	Gli3_Zic1	ENSMUST00000057855.3|Exoc3l|ENSMUSG00000043251.5|exocyst complex component 3-like
mm10_v2_chr9_-_107605295_107605402	0.065656	Gli3_Zic1	ENSMUST00000102529.3|Sema3b|ENSMUSG00000057969.9|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
mm10_v2_chr3_-_30509752_30509822	0.0652243	Gli3_Zic1	ENSMUST00000172697.1|Mecom|ENSMUSG00000027684.10|MDS1 and EVI1 complex locus
mm10_v2_chr4_-_40948196_40948296	0.0652147	Gli3_Zic1	ENSMUST00000030125.4|Bag1|ENSMUSG00000028416.5|BCL2-associated athanogene 1 	ENSMUST00000108089.1|Bag1|ENSMUSG00000028416.5|BCL2-associated athanogene 1
mm10_v2_chr14_-_33185066_33185131	0.0649911	Gli3_Zic1	ENSMUST00000061753.8|Wdfy4|ENSMUSG00000051506.10|WD repeat and FYVE domain containing 4 	ENSMUST00000130509.2|Wdfy4|ENSMUSG00000051506.10|WD repeat and FYVE domain containing 4
mm10_v2_chrX_-_147554050_147554087	0.0641758	Gli3_Zic1	ENSMUST00000112819.2|Lrch2|ENSMUSG00000031290.8|leucine-rich repeats and calponin homology (CH) domain containing 2 	ENSMUST00000136789.1|Lrch2|ENSMUSG00000031290.8|leucine-rich repeats and calponin homology (CH) domain containing 2
mm10_v2_chr18_-_78142119_78142154	0.0640639	Gli3_Zic1	ENSMUST00000160639.1|Slc14a1|ENSMUSG00000059336.8|solute carrier family 14 (urea transporter), member 1
mm10_v2_chr1_+_128103297_128103311	0.0636068	Gli3_Zic1	ENSMUST00000036288.4|R3hdm1|ENSMUSG00000056211.7|R3H domain containing 1
mm10_v2_chr1_-_64121389_64121452	0.0633619	Gli3_Zic1	ENSMUST00000055001.3|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr7_-_19698383_19698407	0.0627066	Gli3_Zic1	ENSMUST00000173739.1|Apoe|ENSMUSG00000002985.9|apolipoprotein E
mm10_v2_chr10_+_69533761_69533776	0.06177	Gli3_Zic1	ENSMUST00000182884.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr17_-_34862473_34862535	0.0602275	Gli3_Zic1	ENSMUST00000025229.4|Cfb|ENSMUSG00000090231.4|complement factor B 	ENSMUST00000176203.2|Cfb|ENSMUSG00000090231.4|complement factor B 	ENSMUST00000128767.1|Cfb|ENSMUSG00000090231.4|complement factor B
mm10_v2_chr2_+_131234043_131234136	0.0600071	Gli3_Zic1	ENSMUST00000041362.5|Mavs|ENSMUSG00000037523.7|mitochondrial antiviral signaling protein 	ENSMUST00000110199.2|Mavs|ENSMUSG00000037523.7|mitochondrial antiviral signaling protein
mm10_v2_chr2_+_118900377_118900397	0.0591704	Gli3_Zic1	ENSMUST00000151162.1|Bahd1|ENSMUSG00000040007.8|bromo adjacent homology domain containing 1
mm10_v2_chr12_-_70227622_70227683	0.0578596	Gli3_Zic1	ENSMUST00000071250.6|Pygl|ENSMUSG00000021069.10|liver glycogen phosphorylase
mm10_v2_chr8_-_69887687_69887687	0.0560592	Gli3_Zic1	ENSMUST00000057831.7|Cilp2|ENSMUSG00000044006.8|cartilage intermediate layer protein 2
mm10_v2_chr8_-_41041828_41041866	0.056029	Gli3_Zic1	ENSMUST00000051379.7|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr8_+_121127827_121127940	0.0558488	Gli3_Zic1	ENSMUST00000181609.1|Foxl1|ENSMUSG00000097084.1|forkhead box L1
mm10_v2_chr5_+_105519388_105519425	0.0540239	Gli3_Zic1	ENSMUST00000067924.6|Lrrc8c|ENSMUSG00000054720.6|leucine rich repeat containing 8 family, member C 	ENSMUST00000150981.1|Lrrc8c|ENSMUSG00000054720.6|leucine rich repeat containing 8 family, member C
mm10_v2_chr14_+_45351473_45351473	0.0539156	Gli3_Zic1	ENSMUST00000111835.2|Styx|ENSMUSG00000053205.8|serine/threonine/tyrosine interaction protein
mm10_v2_chr7_-_75308373_75308386	0.0538527	Gli3_Zic1	ENSMUST00000085164.5|Sv2b|ENSMUSG00000053025.7|synaptic vesicle glycoprotein 2 b
mm10_v2_chr9_+_21592722_21592722	0.05141	Gli3_Zic1	ENSMUST00000062125.10|1810026J23Rik|ENSMUSG00000048429.10|RIKEN cDNA 1810026J23 gene
mm10_v2_chr2_-_119547627_119547627	0.0494812	Gli3_Zic1	ENSMUST00000060009.2|Exd1|ENSMUSG00000048647.3|exonuclease 3'-5' domain containing 1
mm10_v2_chr2_+_119547697_119547762	0.0491832	Gli3_Zic1	ENSMUST00000014221.6|Chp1|ENSMUSG00000014077.7|calcineurin-like EF hand protein 1 	ENSMUST00000119172.1|Chp1|ENSMUSG00000014077.7|calcineurin-like EF hand protein 1
mm10_v2_chr10_-_22149270_22149270	0.0487274	Gli3_Zic1	ENSMUST00000179054.1|E030030I06Rik|ENSMUSG00000055657.8|RIKEN cDNA E030030I06 gene 	ENSMUST00000069372.6|E030030I06Rik|ENSMUSG00000055657.8|RIKEN cDNA E030030I06 gene
mm10_v2_chr15_-_85581809_85581821	0.0485736	Gli3_Zic1	ENSMUST00000023015.7|Wnt7b|ENSMUSG00000022382.8|wingless-related MMTV integration site 7B
mm10_v2_chr9_+_21616230_21616281	0.048152	Gli3_Zic1	ENSMUST00000174008.1|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm10_v2_chr16_-_20241304_20241363	0.0479499	Gli3_Zic1	ENSMUST00000040880.7|Map6d1|ENSMUSG00000041205.7|MAP6 domain containing 1
mm10_v2_chr17_-_34862122_34862238	0.0476841	Gli3_Zic1	ENSMUST00000154526.1|Cfb|ENSMUSG00000090231.4|complement factor B
mm10_v2_chr17_-_23599487_23599547	0.0476643	Gli3_Zic1	ENSMUST00000057029.4|Zfp13|ENSMUSG00000062012.7|zinc finger protein 13
mm10_v2_chr11_+_85832551_85832551	0.0469383	Gli3_Zic1	ENSMUST00000000095.6|Tbx2|ENSMUSG00000000093.6|T-box 2
mm10_v2_chr3_+_79885930_79886002	0.046921	Gli3_Zic1	ENSMUST00000029567.8|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr14_-_62761112_62761145	0.0467527	Gli3_Zic1	ENSMUST00000053959.6|Ints6|ENSMUSG00000035161.6|integrator complex subunit 6
mm10_v2_chr7_-_80340152_80340210	0.0465233	Gli3_Zic1	ENSMUST00000133728.1|Unc45a|ENSMUSG00000030533.9|unc-45 homolog A (C. elegans)
mm10_v2_chr9_+_21616166_21616177	0.0462686	Gli3_Zic1	ENSMUST00000034707.8|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 	ENSMUST00000098948.3|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm10_v2_chr11_+_86544982_86544999	0.0461533	Gli3_Zic1	ENSMUST00000108030.2|Tubd1|ENSMUSG00000020513.9|tubulin, delta 1 	ENSMUST00000020821.3|Tubd1|ENSMUSG00000020513.9|tubulin, delta 1 	ENSMUST00000069503.6|Tubd1|ENSMUSG00000020513.9|tubulin, delta 1 	ENSMUST00000167178.2|Tubd1|ENSMUSG00000020513.9|tubulin, delta 1
mm10_v2_chrX_-_140956675_140956728	0.0459563	Gli3_Zic1	ENSMUST00000033805.8|Psmd10|ENSMUSG00000031429.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 	ENSMUST00000112978.1|Psmd10|ENSMUSG00000031429.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10
mm10_v2_chr14_+_33589238_33589270	0.0456408	Gli3_Zic1	ENSMUST00000022508.6|Ptpn20|ENSMUSG00000021940.9|protein tyrosine phosphatase, non-receptor type 20
mm10_v2_chr12_+_59066908_59066931	0.044596	Gli3_Zic1	ENSMUST00000021381.4|Pnn|ENSMUSG00000020994.4|pinin
mm10_v2_chr4_-_126202583_126202698	0.044446	Gli3_Zic1	ENSMUST00000106142.1|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3 	ENSMUST00000169403.1|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3 	ENSMUST00000130334.1|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3
mm10_v2_chr5_-_114380459_114380487	0.0437479	Gli3_Zic1	ENSMUST00000001125.5|Kctd10|ENSMUSG00000001098.9|potassium channel tetramerisation domain containing 10
mm10_v2_chr10_-_120979327_120979373	0.0435396	Gli3_Zic1	ENSMUST00000119944.1|Lemd3|ENSMUSG00000048661.8|LEM domain containing 3 	ENSMUST00000119093.1|Lemd3|ENSMUSG00000048661.8|LEM domain containing 3
mm10_v2_chr10_+_26772477_26772515	0.0424167	Gli3_Zic1	ENSMUST00000039557.7|Arhgap18|ENSMUSG00000039031.9|Rho GTPase activating protein 18
mm10_v2_chr8_-_85080679_85080746	0.0423856	Gli3_Zic1	ENSMUST00000093357.5|Wdr83|ENSMUSG00000005150.10|WD repeat domain containing 83
mm10_v2_chr19_+_5038826_5038938	0.0422689	Gli3_Zic1	ENSMUST00000053705.6|B3gnt1|ENSMUSG00000047379.6|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1
mm10_v2_chr3_-_45378206_45378260	0.0421189	Gli3_Zic1	ENSMUST00000181047.1|2610316D01Rik|ENSMUSG00000097040.1|RIKEN cDNA 2610316D01 gene
mm10_v2_chr1_+_64690443_64690467	0.0418954	Gli3_Zic1	ENSMUST00000114077.1|Ccnyl1|ENSMUSG00000070871.4|cyclin Y-like 1
mm10_v2_chr16_+_20673264_20673420	0.0418141	Gli3_Zic1	ENSMUST00000154950.1|Eif4g1|ENSMUSG00000045983.9|eukaryotic translation initiation factor 4, gamma 1 	ENSMUST00000115461.1|Eif4g1|ENSMUSG00000045983.9|eukaryotic translation initiation factor 4, gamma 1
mm10_v2_chr13_-_117025505_117025541	0.0417499	Gli3_Zic1	ENSMUST00000022239.6|Parp8|ENSMUSG00000021725.8|poly (ADP-ribose) polymerase family, member 8
mm10_v2_chr2_+_38339258_38339281	0.0417173	Gli3_Zic1	ENSMUST00000143783.2|Lhx2|ENSMUSG00000000247.5|LIM homeobox protein 2
mm10_v2_chr2_-_160872985_160873009	0.0412914	Gli3_Zic1	ENSMUST00000109460.1|Zhx3|ENSMUSG00000035877.11|zinc fingers and homeoboxes 3 	ENSMUST00000127201.1|Zhx3|ENSMUSG00000035877.11|zinc fingers and homeoboxes 3
mm10_v2_chr13_+_54575020_54575093	0.0410863	Gli3_Zic1	ENSMUST00000156024.1|Arl10|ENSMUSG00000025870.4|ADP-ribosylation factor-like 10
mm10_v2_chr9_+_120303896_120303960	0.0403831	Gli3_Zic1	ENSMUST00000048121.6|Myrip|ENSMUSG00000041794.6|myosin VIIA and Rab interacting protein
mm10_v2_chr1_-_180483410_180483504	0.0399162	Gli3_Zic1	ENSMUST00000136521.1|6330403A02Rik|ENSMUSG00000053963.6|RIKEN cDNA 6330403A02 gene 	ENSMUST00000179826.1|6330403A02Rik|ENSMUSG00000053963.6|RIKEN cDNA 6330403A02 gene
mm10_v2_chr17_-_56874421_56874460	0.0398208	Gli3_Zic1	ENSMUST00000043062.4|Acsbg2|ENSMUSG00000024207.8|acyl-CoA synthetase bubblegum family member 2
mm10_v2_chr7_-_142899985_142900014	0.0394002	Gli3_Zic1	ENSMUST00000000219.3|Th|ENSMUSG00000000214.4|tyrosine hydroxylase
mm10_v2_chr2_+_148681023_148681197	0.0392488	Gli3_Zic1	ENSMUST00000028928.7|Gzf1|ENSMUSG00000027439.9|GDNF-inducible zinc finger protein 1
mm10_v2_chr13_+_54949388_54949481	0.0387023	Gli3_Zic1	ENSMUST00000026994.7|Unc5a|ENSMUSG00000025876.9|unc-5 homolog A (C. elegans) 	ENSMUST00000109994.2|Unc5a|ENSMUSG00000025876.9|unc-5 homolog A (C. elegans)
mm10_v2_chr6_-_113434757_113434770	0.0373467	Gli3_Zic1	ENSMUST00000113091.1|Cidec|ENSMUSG00000030278.5|cell death-inducing DFFA-like effector c
mm10_v2_chr15_-_97844254_97844318	0.0371098	Gli3_Zic1	ENSMUST00000119670.1|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7 	ENSMUST00000116409.2|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7
mm10_v2_chr15_+_82147238_82147275	0.0370765	Gli3_Zic1	ENSMUST00000023100.6|Srebf2|ENSMUSG00000022463.7|sterol regulatory element binding factor 2
mm10_v2_chr3_-_89245159_89245199	0.0357066	Gli3_Zic1	ENSMUST00000090924.6|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr2_+_85037448_85037530	0.0354012	Gli3_Zic1	ENSMUST00000168266.1|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1 	ENSMUST00000130729.1|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1
mm10_v2_chr3_+_88142328_88142483	0.035298	Gli3_Zic1	ENSMUST00000001455.6|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D 	ENSMUST00000119251.1|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D
mm10_v2_chr1_+_153900572_153900606	0.0345244	Gli3_Zic1	ENSMUST00000139476.1|Glul|ENSMUSG00000026473.9|glutamate-ammonia ligase (glutamine synthetase)
mm10_v2_chr2_+_156840077_156840141	0.0344546	Gli3_Zic1	ENSMUST00000081335.6|Tgif2|ENSMUSG00000062175.7|TGFB-induced factor homeobox 2 	ENSMUST00000073352.3|Tgif2|ENSMUSG00000062175.7|TGFB-induced factor homeobox 2
mm10_v2_chr10_+_87521795_87521917	0.0343835	Gli3_Zic1	ENSMUST00000020241.8|Pah|ENSMUSG00000020051.9|phenylalanine hydroxylase
mm10_v2_chr6_-_35539765_35539888	0.033634	Gli3_Zic1	ENSMUST00000031866.5|Mtpn|ENSMUSG00000029840.5|myotrophin
mm10_v2_chr17_+_35135174_35135181	0.0335156	Gli3_Zic1	ENSMUST00000166426.2|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000025250.7|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chr2_+_158667119_158667130	0.0316605	Gli3_Zic1	ENSMUST00000045503.4|Ppp1r16b|ENSMUSG00000037754.7|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm10_v2_chr10_-_127341583_127341614	0.0311403	Gli3_Zic1	ENSMUST00000026474.3|Gli1|ENSMUSG00000025407.6|GLI-Kruppel family member GLI1
mm10_v2_chr19_+_27322539_27322592	0.0311029	Gli3_Zic1	ENSMUST00000056708.3|Kcnv2|ENSMUSG00000047298.3|potassium channel, subfamily V, member 2
mm10_v2_chr19_+_5740885_5740904	0.0301553	Gli3_Zic1	ENSMUST00000081496.5|Ltbp3|ENSMUSG00000024940.10|latent transforming growth factor beta binding protein 3
mm10_v2_chr10_-_127288999_127289035	0.0295691	Gli3_Zic1	ENSMUST00000119078.1|Mbd6|ENSMUSG00000025409.8|methyl-CpG binding domain protein 6
mm10_v2_chr12_+_73997749_73997817	0.0294081	Gli3_Zic1	ENSMUST00000110451.2|Syt16|ENSMUSG00000044912.9|synaptotagmin XVI
mm10_v2_chr4_-_155019399_155019437	0.0285277	Gli3_Zic1	ENSMUST00000126098.1|Plch2|ENSMUSG00000029055.11|phospholipase C, eta 2 	ENSMUST00000176194.1|Plch2|ENSMUSG00000029055.11|phospholipase C, eta 2
mm10_v2_chr2_+_27079371_27079385	0.028486	Gli3_Zic1	ENSMUST00000091233.6|Adamtsl2|ENSMUSG00000036040.8|ADAMTS-like 2
mm10_v2_chr12_+_33147693_33147716	0.0284244	Gli3_Zic1	ENSMUST00000077456.6|Atxn7l1|ENSMUSG00000020564.10|ataxin 7-like 1 	ENSMUST00000110824.2|Atxn7l1|ENSMUSG00000020564.10|ataxin 7-like 1
mm10_v2_chr4_+_44943727_44943791	0.0283092	Gli3_Zic1	ENSMUST00000154177.1|Gm12678|ENSMUSG00000084854.1|predicted gene 12678
mm10_v2_chr11_-_69549108_69549108	0.0274882	Gli3_Zic1	ENSMUST00000108659.1|Dnah2|ENSMUSG00000005237.7|dynein, axonemal, heavy chain 2
mm10_v2_chr19_+_8802486_8802530	0.0274493	Gli3_Zic1	ENSMUST00000172175.1|Zbtb3|ENSMUSG00000071661.6|zinc finger and BTB domain containing 3
mm10_v2_chr15_+_9071252_9071273	0.0274208	Gli3_Zic1	ENSMUST00000100789.4|Nadk2|ENSMUSG00000022253.8|NAD kinase 2, mitochondrial 	ENSMUST00000100790.3|Nadk2|ENSMUSG00000022253.8|NAD kinase 2, mitochondrial 	ENSMUST00000067760.4|Nadk2|ENSMUSG00000022253.8|NAD kinase 2, mitochondrial
mm10_v2_chr5_-_115436508_115436606	0.0273295	Gli3_Zic1	ENSMUST00000078701.3|4930430O22Rik|ENSMUSG00000057354.3|RIKEN cDNA 4930430O22 gene
mm10_v2_chr10_+_127063599_127063655	0.0271799	Gli3_Zic1	ENSMUST00000120226.1|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4 	ENSMUST00000133115.1|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4
mm10_v2_chr7_-_66689589_66689603	0.0269589	Gli3_Zic1	ENSMUST00000124899.1|Asb7|ENSMUSG00000030509.10|ankyrin repeat and SOCS box-containing 7
mm10_v2_chr15_-_97844164_97844245	0.0269045	Gli3_Zic1	ENSMUST00000120683.1|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7
mm10_v2_chrX_+_10717451_10717491	0.0267132	Gli3_Zic1	ENSMUST00000156321.1|Mid1ip1|ENSMUSG00000008035.6|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
mm10_v2_chr6_-_115251839_115251867	0.0267002	Gli3_Zic1	ENSMUST00000032462.6|Timp4|ENSMUSG00000030317.6|tissue inhibitor of metalloproteinase 4
mm10_v2_chr5_+_26817357_26817428	0.0262838	Gli3_Zic1	ENSMUST00000071500.6|Dpp6|ENSMUSG00000061576.9|dipeptidylpeptidase 6
mm10_v2_chr11_-_118248590_118248607	0.0261556	Gli3_Zic1	ENSMUST00000106305.2|Cyth1|ENSMUSG00000017132.11|cytohesin 1
mm10_v2_chr8_-_85025268_85025296	0.0261486	Gli3_Zic1	ENSMUST00000064314.8|Asna1|ENSMUSG00000052456.8|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
mm10_v2_chr17_+_85613432_85613608	0.0249506	Gli3_Zic1	ENSMUST00000176081.1|Six3|ENSMUSG00000038805.9|sine oculis-related homeobox 3
mm10_v2_chr19_-_6921753_6921803	0.0249099	Gli3_Zic1	ENSMUST00000173635.1|Esrra|ENSMUSG00000024955.7|estrogen related receptor, alpha
mm10_v2_chr17_-_56609689_56609771	0.0230036	Gli3_Zic1	ENSMUST00000052832.5|2410015M20Rik|ENSMUSG00000049760.5|RIKEN cDNA 2410015M20 gene
mm10_v2_chrX_-_8193387_8193512	0.0227844	Gli3_Zic1	ENSMUST00000143223.1|Ebp|ENSMUSG00000031168.8|phenylalkylamine Ca2+ antagonist (emopamil) binding protein 	ENSMUST00000033509.8|Ebp|ENSMUSG00000031168.8|phenylalkylamine Ca2+ antagonist (emopamil) binding protein
mm10_v2_chr10_+_126978690_126978749	0.0227209	Gli3_Zic1	ENSMUST00000105256.2|Ctdsp2|ENSMUSG00000078429.2|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
mm10_v2_chr15_-_102366314_102366338	0.0216487	Gli3_Zic1	ENSMUST00000078508.5|Sp7|ENSMUSG00000060284.6|Sp7 transcription factor 7
mm10_v2_chr17_-_28350600_28350681	0.0215187	Gli3_Zic1	ENSMUST00000114799.1|Tead3|ENSMUSG00000002249.11|TEA domain family member 3
mm10_v2_chr3_-_30509462_30509514	0.0202978	Gli3_Zic1	ENSMUST00000173899.1|Mecom|ENSMUSG00000027684.10|MDS1 and EVI1 complex locus
mm10_v2_chr6_+_47877204_47877204	0.0199188	Gli3_Zic1	ENSMUST00000061890.7|Zfp282|ENSMUSG00000025821.9|zinc finger protein 282
mm10_v2_chr10_-_67548944_67549001	0.0197455	Gli3_Zic1	ENSMUST00000075686.4|Ado|ENSMUSG00000057134.4|2-aminoethanethiol (cysteamine) dioxygenase
mm10_v2_chr10_+_79777261_79777280	0.0181276	Gli3_Zic1	ENSMUST00000020575.4|Fstl3|ENSMUSG00000020325.10|follistatin-like 3
mm10_v2_chr8_+_104867488_104867488	0.0181254	Gli3_Zic1	ENSMUST00000043209.9|Ces2d-ps|ENSMUSG00000031884.9|carboxylesterase 2D, pseudogene
mm10_v2_chr9_-_108190352_108190420	0.0177969	Gli3_Zic1	ENSMUST00000035208.7|Bsn|ENSMUSG00000032589.8|bassoon
mm10_v2_chr6_+_125067913_125067942	0.0174494	Gli3_Zic1	ENSMUST00000088292.5|Lpar5|ENSMUSG00000067714.7|lysophosphatidic acid receptor 5
mm10_v2_chr9_+_55150050_55150083	0.0173732	Gli3_Zic1	ENSMUST00000122441.1|Ube2q2|ENSMUSG00000032307.10|ubiquitin-conjugating enzyme E2Q (putative) 2
mm10_v2_chr5_-_142530041_142530084	0.0169786	Gli3_Zic1	ENSMUST00000099400.2|Papolb|ENSMUSG00000074817.2|poly (A) polymerase beta (testis specific)
mm10_v2_chr15_-_89140664_89140703	0.0161696	Gli3_Zic1	ENSMUST00000088827.6|Mapk12|ENSMUSG00000022610.9|mitogen-activated protein kinase 12
mm10_v2_chr19_-_5560570_5560582	0.0160278	Gli3_Zic1	ENSMUST00000025861.1|Ovol1|ENSMUSG00000024922.1|OVO homolog-like 1 (Drosophila)
mm10_v2_chr10_+_69533803_69533848	0.0157372	Gli3_Zic1	ENSMUST00000182155.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183169.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183148.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr4_-_147848358_147848425	0.0146253	Gli3_Zic1	ENSMUST00000105718.1|Zfp933|ENSMUSG00000059423.7|zinc finger protein 933 	ENSMUST00000135798.1|Zfp933|ENSMUSG00000059423.7|zinc finger protein 933
mm10_v2_chr9_+_60794468_60794577	0.013788	Gli3_Zic1	ENSMUST00000050183.6|Uaca|ENSMUSG00000034485.9|uveal autoantigen with coiled-coil domains and ankyrin repeats
mm10_v2_chr7_+_125603420_125603437	0.0137053	Gli3_Zic1	ENSMUST00000033000.6|Il21r|ENSMUSG00000030745.8|interleukin 21 receptor
mm10_v2_chr2_-_103797617_103797662	0.0129402	Gli3_Zic1	ENSMUST00000028607.6|Caprin1|ENSMUSG00000027184.8|cell cycle associated protein 1
mm10_v2_chr5_+_67306941_67306977	0.0116974	Gli3_Zic1	ENSMUST00000162372.1|Slc30a9|ENSMUSG00000029221.9|solute carrier family 30 (zinc transporter), member 9 	ENSMUST00000113676.2|Slc30a9|ENSMUSG00000029221.9|solute carrier family 30 (zinc transporter), member 9
mm10_v2_chr4_+_144893077_144893103	0.0114835	Gli3_Zic1	ENSMUST00000154208.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr9_-_44881274_44881323	0.0107112	Gli3_Zic1	ENSMUST00000002095.3|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A 	ENSMUST00000114689.1|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A 	ENSMUST00000128768.1|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A
mm10_v2_chr6_-_118780324_118780324	0.00993898	Gli3_Zic1	ENSMUST00000112793.3|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000075591.6|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000078320.7|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000112790.2|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit
mm10_v2_chr9_-_99710063_99710085	0.00980631	Gli3_Zic1	ENSMUST00000035048.5|Cldn18|ENSMUSG00000032473.7|claudin 18
mm10_v2_chr2_+_32646586_32646602	0.00967	Gli3_Zic1	ENSMUST00000009705.7|Eng|ENSMUSG00000026814.10|endoglin 	ENSMUST00000167841.1|Eng|ENSMUSG00000026814.10|endoglin
mm10_v2_chr11_+_77763246_77763339	0.00930554	Gli3_Zic1	ENSMUST00000108375.2|Myo18a|ENSMUSG00000000631.13|myosin XVIIIA
mm10_v2_chrX_+_73064787_73064787	0.00665094	Gli3_Zic1	ENSMUST00000060418.6|Pnma3|ENSMUSG00000046287.6|paraneoplastic antigen MA3
mm10_v2_chr2_-_29055051_29055079	0.00658526	Gli3_Zic1	ENSMUST00000113843.1|1700101E01Rik|ENSMUSG00000079502.2|RIKEN cDNA 1700101E01 gene 	ENSMUST00000157048.2|1700101E01Rik|ENSMUSG00000079502.2|RIKEN cDNA 1700101E01 gene
mm10_v2_chr5_-_114380505_114380520	0.00568668	Gli3_Zic1	ENSMUST00000102581.4|Kctd10|ENSMUSG00000001098.9|potassium channel tetramerisation domain containing 10
mm10_v2_chr10_-_19015347_19015410	0.00523929	Gli3_Zic1	ENSMUST00000019997.4|Tnfaip3|ENSMUSG00000019850.5|tumor necrosis factor, alpha-induced protein 3
mm10_v2_chrX_+_155262443_155262481	0.00521681	Gli3_Zic1	ENSMUST00000026324.9|Acot9|ENSMUSG00000025287.9|acyl-CoA thioesterase 9
mm10_v2_chr2_-_155945282_155945367	0.00431465	Gli3_Zic1	ENSMUST00000040162.2|Gdf5|ENSMUSG00000038259.4|growth differentiation factor 5
mm10_v2_chr11_-_56040985_56041023	0.00429677	Gli3_Zic1	ENSMUST00000037682.2|Nmur2|ENSMUSG00000037393.2|neuromedin U receptor 2
mm10_v2_chr16_-_28445227_28445395	0.00426014	Gli3_Zic1	ENSMUST00000100024.1|Fgf12|ENSMUSG00000022523.9|fibroblast growth factor 12
mm10_v2_chr8_-_34146974_34147033	0.0042106	Gli3_Zic1	ENSMUST00000033910.8|Leprotl1|ENSMUSG00000031513.8|leptin receptor overlapping transcript-like 1
mm10_v2_chr19_+_8888880_8888925	0.00364893	Gli3_Zic1	ENSMUST00000096251.3|1810009A15Rik|ENSMUSG00000071653.3|RIKEN cDNA 1810009A15 gene
mm10_v2_chrX_+_101299143_101299201	0.00314963	Gli3_Zic1	ENSMUST00000118111.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3 	ENSMUST00000130555.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3 	ENSMUST00000151528.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3
mm10_v2_chr7_-_114636299_114636357	0.00295532	Gli3_Zic1	ENSMUST00000032906.4|Calca|ENSMUSG00000030669.7|calcitonin/calcitonin-related polypeptide, alpha 	ENSMUST00000032907.7|Calca|ENSMUSG00000030669.7|calcitonin/calcitonin-related polypeptide, alpha
mm10_v2_chr15_-_99820072_99820154	0.002224	Gli3_Zic1	ENSMUST00000109024.2|Lima1|ENSMUSG00000023022.7|LIM domain and actin binding 1
mm10_v2_chr4_+_74251928_74251990	0.00182158	Gli3_Zic1	ENSMUST00000030102.5|Kdm4c|ENSMUSG00000028397.7|lysine (K)-specific demethylase 4C
mm10_v2_chr10_+_69534039_69534070	0.000825028	Gli3_Zic1	ENSMUST00000182557.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr6_+_70956456_70956606	0.000577571	Gli3_Zic1	ENSMUST00000163089.1|Foxi3|ENSMUSG00000055874.6|forkhead box I3 	ENSMUST00000069634.5|Foxi3|ENSMUSG00000055874.6|forkhead box I3
mm10_v2_chr3_-_106547564_106547592	0.000529193	Gli3_Zic1	ENSMUST00000121231.1|Cept1|ENSMUSG00000040774.9|choline/ethanolaminephosphotransferase 1 	ENSMUST00000141525.1|Cept1|ENSMUSG00000040774.9|choline/ethanolaminephosphotransferase 1
mm10_v2_chrX_+_152144240_152144272	0.000494796	Gli3_Zic1	ENSMUST00000168786.1|Iqsec2|ENSMUSG00000041115.10|IQ motif and Sec7 domain 2 	ENSMUST00000112605.1|Iqsec2|ENSMUSG00000041115.10|IQ motif and Sec7 domain 2 	ENSMUST00000112604.1|Iqsec2|ENSMUSG00000041115.10|IQ motif and Sec7 domain 2
