mm10_v2_chr2_+_28205648_28205672	0.568876	Hoxa11_Hoxc12	ENSMUST00000102879.3|Olfm1|ENSMUSG00000026833.12|olfactomedin 1 	ENSMUST00000028177.4|Olfm1|ENSMUSG00000026833.12|olfactomedin 1
mm10_v2_chr18_+_37655891_37655915	0.545769	Hoxa11_Hoxc12	ENSMUST00000097608.2|3222401L13Rik|ENSMUSG00000073590.2|RIKEN cDNA 3222401L13 gene
mm10_v2_chr17_-_21845759_21845759	0.500561	Hoxa11_Hoxc12	ENSMUST00000084141.4|Zfp820|ENSMUSG00000069743.4|zinc finger protein 820
mm10_v2_chr6_+_96115249_96115311	0.483451	Hoxa11_Hoxc12	ENSMUST00000075080.5|Fam19a1|ENSMUSG00000059187.6|family with sequence similarity 19, member A1
mm10_v2_chr18_-_38209762_38209786	0.444967	Hoxa11_Hoxc12	ENSMUST00000057185.6|Pcdh1|ENSMUSG00000051375.9|protocadherin 1
mm10_v2_chr4_-_138367966_138368008	0.442298	Hoxa11_Hoxc12	ENSMUST00000030535.3|Cda|ENSMUSG00000028755.3|cytidine deaminase
mm10_v2_chr19_+_4097392_4097415	0.393602	Hoxa11_Hoxc12	ENSMUST00000174514.1|Cdk2ap2|ENSMUSG00000024856.4|CDK2-associated protein 2 	ENSMUST00000174149.1|Cdk2ap2|ENSMUSG00000024856.4|CDK2-associated protein 2
mm10_v2_chr15_-_101850778_101850792	0.377841	Hoxa11_Hoxc12	ENSMUST00000023790.3|Krt1|ENSMUSG00000046834.6|keratin 1
mm10_v2_chr19_+_5406815_5406880	0.339582	Hoxa11_Hoxc12	ENSMUST00000174412.1|4930481A15Rik|ENSMUSG00000086938.2|RIKEN cDNA 4930481A15 gene 	ENSMUST00000153017.2|4930481A15Rik|ENSMUSG00000086938.2|RIKEN cDNA 4930481A15 gene
mm10_v2_chr17_+_22361453_22361522	0.308786	Hoxa11_Hoxc12	ENSMUST00000149699.1|Zfp758|ENSMUSG00000044501.11|zinc finger protein 758 	ENSMUST00000088765.2|Zfp758|ENSMUSG00000044501.11|zinc finger protein 758 	ENSMUST00000072477.4|Zfp758|ENSMUSG00000044501.11|zinc finger protein 758 	ENSMUST00000121315.1|Zfp758|ENSMUSG00000044501.11|zinc finger protein 758
mm10_v2_chr18_-_10706688_10706771	0.296727	Hoxa11_Hoxc12	ENSMUST00000002549.7|Abhd3|ENSMUSG00000002475.9|abhydrolase domain containing 3 	ENSMUST00000117726.1|Abhd3|ENSMUSG00000002475.9|abhydrolase domain containing 3 	ENSMUST00000117828.1|Abhd3|ENSMUSG00000002475.9|abhydrolase domain containing 3
mm10_v2_chr17_+_6270475_6270475	0.291274	Hoxa11_Hoxc12	ENSMUST00000088940.4|Tmem181a|ENSMUSG00000038141.8|transmembrane protein 181A
mm10_v2_chr16_+_96235801_96235801	0.282756	Hoxa11_Hoxc12	ENSMUST00000113800.2|B3galt5|ENSMUSG00000074892.3|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5
mm10_v2_chr16_+_75592844_75592928	0.270052	Hoxa11_Hoxc12	ENSMUST00000114249.1|Rbm11|ENSMUSG00000032940.10|RNA binding motif protein 11 	ENSMUST00000046378.7|Rbm11|ENSMUSG00000032940.10|RNA binding motif protein 11 	ENSMUST00000114253.1|Rbm11|ENSMUSG00000032940.10|RNA binding motif protein 11
mm10_v2_chr7_-_142661858_142661880	0.24415	Hoxa11_Hoxc12	ENSMUST00000145896.2|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr16_+_23224724_23224804	0.236969	Hoxa11_Hoxc12	ENSMUST00000023601.7|St6gal1|ENSMUSG00000022885.9|beta galactoside alpha 2,6 sialyltransferase 1
mm10_v2_chr11_-_97699634_97699698	0.22946	Hoxa11_Hoxc12	ENSMUST00000103148.1|Pcgf2|ENSMUSG00000018537.10|polycomb group ring finger 2 	ENSMUST00000169807.1|Pcgf2|ENSMUSG00000018537.10|polycomb group ring finger 2
mm10_v2_chr17_-_13761441_13761601	0.225675	Hoxa11_Hoxc12	ENSMUST00000127032.1|Tcte2|ENSMUSG00000038347.8|t-complex-associated testis expressed 2
mm10_v2_chr15_+_82298943_82298984	0.212239	Hoxa11_Hoxc12	ENSMUST00000023089.3|Wbp2nl|ENSMUSG00000022455.3|WBP2 N-terminal like
mm10_v2_chr2_-_104712122_104712180	0.206076	Hoxa11_Hoxc12	ENSMUST00000111118.1|Tcp11l1|ENSMUSG00000027175.4|t-complex 11 like 1 	ENSMUST00000028597.3|Tcp11l1|ENSMUSG00000027175.4|t-complex 11 like 1
mm10_v2_chr7_-_126649556_126649580	0.202914	Hoxa11_Hoxc12	ENSMUST00000084587.1|2510046G10Rik|ENSMUSG00000066175.1|RIKEN cDNA 2510046G10 gene
mm10_v2_chr2_+_23068168_23068241	0.198872	Hoxa11_Hoxc12	ENSMUST00000028121.7|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5 	ENSMUST00000114523.2|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5 	ENSMUST00000144088.1|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5
mm10_v2_chr7_-_73537621_73537766	0.198523	Hoxa11_Hoxc12	ENSMUST00000172704.1|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr1_-_182409020_182409020	0.18997	Hoxa11_Hoxc12	ENSMUST00000097444.1|Gm10517|ENSMUSG00000073482.1|predicted gene 10517
mm10_v2_chr3_+_126597415_126597440	0.187647	Hoxa11_Hoxc12	ENSMUST00000066452.7|Camk2d|ENSMUSG00000053819.10|calcium/calmodulin-dependent protein kinase II, delta 	ENSMUST00000171289.1|Camk2d|ENSMUSG00000053819.10|calcium/calmodulin-dependent protein kinase II, delta 	ENSMUST00000106399.1|Camk2d|ENSMUSG00000053819.10|calcium/calmodulin-dependent protein kinase II, delta
mm10_v2_chr11_-_62457772_62457835	0.185972	Hoxa11_Hoxc12	ENSMUST00000127471.2|Ncor1|ENSMUSG00000018501.11|nuclear receptor co-repressor 1
mm10_v2_chr14_+_80000292_80000309	0.181768	Hoxa11_Hoxc12	ENSMUST00000088735.3|Olfm4|ENSMUSG00000022026.6|olfactomedin 4
mm10_v2_chr6_-_52240841_52240854	0.178756	Hoxa11_Hoxc12	ENSMUST00000121043.1|Hoxa10|ENSMUSG00000000938.11|homeobox A10
mm10_v2_chr17_+_34417347_34417424	0.178073	Hoxa11_Hoxc12	ENSMUST00000142317.1|BC051142|ENSMUSG00000057246.8|cDNA sequence BC051142
mm10_v2_chr7_-_46795661_46795722	0.170492	Hoxa11_Hoxc12	ENSMUST00000123725.1|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human)
mm10_v2_chr16_-_57231434_57231509	0.170403	Hoxa11_Hoxc12	ENSMUST00000023431.6|Tbc1d23|ENSMUSG00000022749.6|TBC1 domain family, member 23
mm10_v2_chr16_-_45408955_45409053	0.170224	Hoxa11_Hoxc12	ENSMUST00000163230.1|Cd200|ENSMUSG00000022661.8|CD200 antigen
mm10_v2_chr3_-_117360876_117360876	0.1683	Hoxa11_Hoxc12	ENSMUST00000061071.8|D3Bwg0562e|ENSMUSG00000044667.8|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm10_v2_chr14_+_26894557_26894604	0.16824	Hoxa11_Hoxc12	ENSMUST00000090337.4|Asb14|ENSMUSG00000021898.8|ankyrin repeat and SOCS box-containing 14 	ENSMUST00000165929.2|Asb14|ENSMUSG00000021898.8|ankyrin repeat and SOCS box-containing 14
mm10_v2_chr15_-_100424092_100424173	0.161525	Hoxa11_Hoxc12	ENSMUST00000154676.1|Slc11a2|ENSMUSG00000023030.10|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
mm10_v2_chr11_+_60479915_60479915	0.161154	Hoxa11_Hoxc12	ENSMUST00000126522.1|Myo15|ENSMUSG00000042678.10|myosin XV
mm10_v2_chr9_-_75441652_75441652	0.159458	Hoxa11_Hoxc12	ENSMUST00000181896.1|A130057D12Rik|ENSMUSG00000097298.1|RIKEN cDNA A130057D12 gene
mm10_v2_chr11_+_117484368_117484368	0.157302	Hoxa11_Hoxc12	ENSMUST00000092394.3|Gm11733|ENSMUSG00000069588.3|predicted gene 11733
mm10_v2_chr8_+_25720054_25720099	0.156692	Hoxa11_Hoxc12	ENSMUST00000068916.8|Ppapdc1b|ENSMUSG00000031570.10|phosphatidic acid phosphatase type 2 domain containing 1B 	ENSMUST00000139836.1|Ppapdc1b|ENSMUSG00000031570.10|phosphatidic acid phosphatase type 2 domain containing 1B
mm10_v2_chr1_-_93101825_93101849	0.154562	Hoxa11_Hoxc12	ENSMUST00000112958.2|Kif1a|ENSMUSG00000014602.9|kinesin family member 1A
mm10_v2_chr18_+_37333853_37333946	0.154484	Hoxa11_Hoxc12	ENSMUST00000061717.2|Pcdhb6|ENSMUSG00000051678.3|protocadherin beta 6
mm10_v2_chr11_-_5542177_5542219	0.153231	Hoxa11_Hoxc12	ENSMUST00000020776.4|Ccdc117|ENSMUSG00000020482.4|coiled-coil domain containing 117
mm10_v2_chr7_-_119895446_119895543	0.152662	Hoxa11_Hoxc12	ENSMUST00000098080.2|Dcun1d3|ENSMUSG00000048787.6|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm10_v2_chr17_+_35076902_35077073	0.151794	Hoxa11_Hoxc12	ENSMUST00000172494.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E 	ENSMUST00000172678.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E 	ENSMUST00000013910.4|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E
mm10_v2_chr11_+_105994635_105994678	0.148812	Hoxa11_Hoxc12	ENSMUST00000183675.1|ACE3|ENSMUSG00000098427.1|angiotensin I converting enzyme 3 precursor  	ENSMUST00000184871.1|Ace3|ENSMUSG00000098551.1|angiotensin I converting enzyme (peptidyl-dipeptidase A) 3
mm10_v2_chr18_-_15063560_15063617	0.146637	Hoxa11_Hoxc12	ENSMUST00000168989.1|Kctd1|ENSMUSG00000036225.8|potassium channel tetramerisation domain containing 1
mm10_v2_chr19_+_29945782_29945799	0.1442	Hoxa11_Hoxc12	ENSMUST00000025724.8|Il33|ENSMUSG00000024810.10|interleukin 33
mm10_v2_chr14_+_54883377_54883507	0.143731	Hoxa11_Hoxc12	ENSMUST00000022806.3|Bcl2l2|ENSMUSG00000089682.3|BCL2-like 2 	ENSMUST00000134077.1|Gm20521|ENSMUSG00000092232.1|predicted gene 20521 	ENSMUST00000172844.1|Bcl2l2|ENSMUSG00000089682.3|BCL2-like 2 	ENSMUST00000133397.2|Bcl2l2|ENSMUSG00000089682.3|BCL2-like 2
mm10_v2_chr5_-_116024475_116024508	0.139341	Hoxa11_Hoxc12	ENSMUST00000111999.1|Prkab1|ENSMUSG00000029513.8|protein kinase, AMP-activated, beta 1 non-catalytic subunit
mm10_v2_chr1_+_136683375_136683410	0.138628	Hoxa11_Hoxc12	ENSMUST00000181524.1|Gm19705|ENSMUSG00000097113.1|predicted gene, 19705
mm10_v2_chrX_+_20364481_20364616	0.136607	Hoxa11_Hoxc12	ENSMUST00000033372.6|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human) 	ENSMUST00000115391.1|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human) 	ENSMUST00000115387.1|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human)
mm10_v2_chrX_+_41401304_41401427	0.136252	Hoxa11_Hoxc12	ENSMUST00000076349.5|Gria3|ENSMUSG00000001986.10|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm10_v2_chr3_+_100489508_100489664	0.132941	Hoxa11_Hoxc12	ENSMUST00000122898.1|Gm12474|ENSMUSG00000053957.5|predicted gene 12474
mm10_v2_chr7_+_4460687_4460730	0.132734	Hoxa11_Hoxc12	ENSMUST00000167298.1|Eps8l1|ENSMUSG00000006154.7|EPS8-like 1 	ENSMUST00000171445.1|Eps8l1|ENSMUSG00000006154.7|EPS8-like 1
mm10_v2_chr1_+_161395409_161395439	0.126334	Hoxa11_Hoxc12	ENSMUST00000028024.4|Tnfsf4|ENSMUSG00000026700.4|tumor necrosis factor (ligand) superfamily, member 4
mm10_v2_chr1_+_88087802_88087848	0.126129	Hoxa11_Hoxc12	ENSMUST00000113139.1|Ugt1a8|ENSMUSG00000089675.1|UDP glucuronosyltransferase 1 family, polypeptide A8
mm10_v2_chr4_-_129378116_129378116	0.124583	Hoxa11_Hoxc12	ENSMUST00000030610.2|Zbtb8a|ENSMUSG00000028807.2|zinc finger and BTB domain containing 8a
mm10_v2_chr11_-_43426192_43426258	0.122451	Hoxa11_Hoxc12	ENSMUST00000101340.4|Pttg1|ENSMUSG00000020415.10|pituitary tumor-transforming gene 1 	ENSMUST00000118368.1|Pttg1|ENSMUSG00000020415.10|pituitary tumor-transforming gene 1 	ENSMUST00000020685.9|Pttg1|ENSMUSG00000020415.10|pituitary tumor-transforming gene 1 	ENSMUST00000020687.8|Pttg1|ENSMUSG00000020415.10|pituitary tumor-transforming gene 1
mm10_v2_chr9_+_3404058_3404098	0.122177	Hoxa11_Hoxc12	ENSMUST00000027027.5|Cwf19l2|ENSMUSG00000025898.5|CWF19-like 2, cell cycle control (S. pombe)
mm10_v2_chr5_-_38502079_38502101	0.121702	Hoxa11_Hoxc12	ENSMUST00000147664.1|Slc2a9|ENSMUSG00000005107.7|solute carrier family 2 (facilitated glucose transporter), member 9
mm10_v2_chr2_+_74711911_74711939	0.119214	Hoxa11_Hoxc12	ENSMUST00000111983.2|Hoxd3|ENSMUSG00000079277.3|homeobox D3
mm10_v2_chr15_+_85510812_85510812	0.118892	Hoxa11_Hoxc12	ENSMUST00000079690.2|Gm4825|ENSMUSG00000063548.2|predicted pseudogene 4825
mm10_v2_chr11_+_59306920_59306935	0.117009	Hoxa11_Hoxc12	ENSMUST00000000128.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A 	ENSMUST00000108783.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A
mm10_v2_chr1_+_178529113_178529134	0.116824	Hoxa11_Hoxc12	ENSMUST00000161017.1|Kif26b|ENSMUSG00000026494.6|kinesin family member 26B
mm10_v2_chr2_+_166805506_166805605	0.115153	Hoxa11_Hoxc12	ENSMUST00000099078.3|Arfgef2|ENSMUSG00000074582.4|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm10_v2_chr6_-_29216301_29216364	0.114654	Hoxa11_Hoxc12	ENSMUST00000162739.1|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1 	ENSMUST00000162099.1|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1 	ENSMUST00000159124.1|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1
mm10_v2_chr10_+_40683253_40683282	0.108589	Hoxa11_Hoxc12	ENSMUST00000058747.3|Mettl24|ENSMUSG00000045555.3|methyltransferase like 24
mm10_v2_chr6_-_87809757_87809787	0.108485	Hoxa11_Hoxc12	ENSMUST00000032134.7|Rab43|ENSMUSG00000030055.10|RAB43, member RAS oncogene family
mm10_v2_chr11_+_55213783_55213814	0.107537	Hoxa11_Hoxc12	ENSMUST00000108867.1|Slc36a1|ENSMUSG00000020261.9|solute carrier family 36 (proton/amino acid symporter), member 1
mm10_v2_chr4_-_45408646_45408768	0.103856	Hoxa11_Hoxc12	ENSMUST00000153904.1|Slc25a51|ENSMUSG00000045973.12|solute carrier family 25, member 51 	ENSMUST00000132815.2|Slc25a51|ENSMUSG00000045973.12|solute carrier family 25, member 51 	ENSMUST00000107796.1|Slc25a51|ENSMUSG00000045973.12|solute carrier family 25, member 51 	ENSMUST00000116341.3|Slc25a51|ENSMUSG00000045973.12|solute carrier family 25, member 51
mm10_v2_chr5_+_66968961_66969132	0.103683	Hoxa11_Hoxc12	ENSMUST00000132991.1|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr11_-_30986326_30986372	0.0911405	Hoxa11_Hoxc12	ENSMUST00000020553.4|Chac2|ENSMUSG00000020309.6|ChaC, cation transport regulator 2 	ENSMUST00000101394.4|Chac2|ENSMUSG00000020309.6|ChaC, cation transport regulator 2
mm10_v2_chr3_-_144849301_144849357	0.0905551	Hoxa11_Hoxc12	ENSMUST00000159989.1|Clca4|ENSMUSG00000037033.9|chloride channel calcium activated 4
mm10_v2_chr1_-_136131171_136131185	0.0879126	Hoxa11_Hoxc12	ENSMUST00000146091.3|Gm15850|ENSMUSG00000086264.3|predicted gene 15850 	ENSMUST00000165464.1|Gm15850|ENSMUSG00000086264.3|predicted gene 15850 	ENSMUST00000166747.1|Gm15850|ENSMUSG00000086264.3|predicted gene 15850 	ENSMUST00000134998.1|Gm15850|ENSMUSG00000086264.3|predicted gene 15850
mm10_v2_chr5_-_116024452_116024468	0.0865597	Hoxa11_Hoxc12	ENSMUST00000031486.7|Prkab1|ENSMUSG00000029513.8|protein kinase, AMP-activated, beta 1 non-catalytic subunit
mm10_v2_chrX_+_41401128_41401200	0.084849	Hoxa11_Hoxc12	ENSMUST00000115103.2|Gria3|ENSMUSG00000001986.10|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm10_v2_chr6_-_29216277_29216292	0.0842042	Hoxa11_Hoxc12	ENSMUST00000162215.1|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1
mm10_v2_chr16_-_16600533_16600576	0.0839068	Hoxa11_Hoxc12	ENSMUST00000159542.1|Fgd4|ENSMUSG00000022788.10|FYVE, RhoGEF and PH domain containing 4
mm10_v2_chr16_-_74411776_74411792	0.0834506	Hoxa11_Hoxc12	ENSMUST00000116586.2|Robo2|ENSMUSG00000052516.11|roundabout homolog 2 (Drosophila)
mm10_v2_chr7_+_125318334_125318359	0.0831003	Hoxa11_Hoxc12	ENSMUST00000060220.1|4930533L02Rik|ENSMUSG00000051614.1|RIKEN cDNA 4930533L02 gene
mm10_v2_chr1_+_88070765_88070800	0.0800342	Hoxa11_Hoxc12	ENSMUST00000073772.4|Ugt1a9|ENSMUSG00000090175.1|UDP glucuronosyltransferase 1 family, polypeptide A9
mm10_v2_chr8_-_15046047_15046091	0.0799332	Hoxa11_Hoxc12	ENSMUST00000050493.3|BB014433|ENSMUSG00000049008.4|expressed sequence BB014433 	ENSMUST00000123331.1|BB014433|ENSMUSG00000049008.4|expressed sequence BB014433
mm10_v2_chr3_+_126597299_126597413	0.0790191	Hoxa11_Hoxc12	ENSMUST00000106400.2|Camk2d|ENSMUSG00000053819.10|calcium/calmodulin-dependent protein kinase II, delta 	ENSMUST00000106401.1|Camk2d|ENSMUSG00000053819.10|calcium/calmodulin-dependent protein kinase II, delta
mm10_v2_chr16_-_23225334_23225368	0.0775643	Hoxa11_Hoxc12	ENSMUST00000055369.4|BC106179|ENSMUSG00000045231.4|cDNA sequence BC106179
mm10_v2_chr14_-_34503323_34503345	0.0762885	Hoxa11_Hoxc12	ENSMUST00000171343.1|Bmpr1a|ENSMUSG00000021796.8|bone morphogenetic protein receptor, type 1A
mm10_v2_chr7_-_120145286_120145292	0.0751652	Hoxa11_Hoxc12	ENSMUST00000033207.4|Zp2|ENSMUSG00000030911.6|zona pellucida glycoprotein 2
mm10_v2_chr4_+_109235262_109235262	0.0720191	Hoxa11_Hoxc12	ENSMUST00000106631.2|Calr4|ENSMUSG00000028558.8|calreticulin 4
mm10_v2_chr4_+_102741287_102741298	0.0720107	Hoxa11_Hoxc12	ENSMUST00000097948.2|Sgip1|ENSMUSG00000028524.15|SH3-domain GRB2-like (endophilin) interacting protein 1
mm10_v2_chr5_-_73256555_73256636	0.0712546	Hoxa11_Hoxc12	ENSMUST00000171179.1|Fryl|ENSMUSG00000090491.1|furry homolog-like (Drosophila) 	ENSMUST00000101127.5|Fryl|ENSMUSG00000070733.7|furry homolog-like (Drosophila)
mm10_v2_chr7_-_41448641_41448641	0.0691323	Hoxa11_Hoxc12	ENSMUST00000165029.1|Vmn2r57|ENSMUSG00000066537.4|vomeronasal 2, receptor 57
mm10_v2_chr11_+_75732869_75732975	0.0684067	Hoxa11_Hoxc12	ENSMUST00000067664.3|Ywhae|ENSMUSG00000020849.7|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm10_v2_chr18_-_46280820_46280850	0.0666835	Hoxa11_Hoxc12	ENSMUST00000025354.3|Pggt1b|ENSMUSG00000024477.3|protein geranylgeranyltransferase type I, beta subunit
mm10_v2_chr1_+_43730593_43730633	0.0641398	Hoxa11_Hoxc12	ENSMUST00000027217.8|1500015O10Rik|ENSMUSG00000026051.8|RIKEN cDNA 1500015O10 gene
mm10_v2_chr19_+_58759700_58759745	0.0628611	Hoxa11_Hoxc12	ENSMUST00000026081.3|Pnliprp2|ENSMUSG00000025091.3|pancreatic lipase-related protein 2
mm10_v2_chr7_+_126649297_126649344	0.0609735	Hoxa11_Hoxc12	ENSMUST00000032956.8|Ccdc101|ENSMUSG00000030714.8|coiled-coil domain containing 101
mm10_v2_chr19_-_40994133_40994148	0.0605637	Hoxa11_Hoxc12	ENSMUST00000117695.1|Blnk|ENSMUSG00000061132.7|B cell linker
mm10_v2_chr9_-_71168657_71168683	0.0594893	Hoxa11_Hoxc12	ENSMUST00000113570.1|Aqp9|ENSMUSG00000032204.7|aquaporin 9
mm10_v2_chr15_+_100423193_100423193	0.0569673	Hoxa11_Hoxc12	ENSMUST00000148928.1|Gm5475|ENSMUSG00000087444.1|predicted gene 5475
mm10_v2_chr12_+_78226627_78226655	0.0568394	Hoxa11_Hoxc12	ENSMUST00000110388.2|Gphn|ENSMUSG00000047454.5|gephyrin 	ENSMUST00000052472.4|Gphn|ENSMUSG00000047454.5|gephyrin
mm10_v2_chr4_+_107889813_107889908	0.0565011	Hoxa11_Hoxc12	ENSMUST00000135454.1|0610037L13Rik|ENSMUSG00000028608.9|RIKEN cDNA 0610037L13 gene 	ENSMUST00000106726.3|0610037L13Rik|ENSMUSG00000028608.9|RIKEN cDNA 0610037L13 gene 	ENSMUST00000106727.3|0610037L13Rik|ENSMUSG00000028608.9|RIKEN cDNA 0610037L13 gene 	ENSMUST00000119394.1|0610037L13Rik|ENSMUSG00000028608.9|RIKEN cDNA 0610037L13 gene 	ENSMUST00000120473.1|0610037L13Rik|ENSMUSG00000028608.9|RIKEN cDNA 0610037L13 gene 	ENSMUST00000125107.1|0610037L13Rik|ENSMUSG00000028608.9|RIKEN cDNA 0610037L13 gene 	ENSMUST00000128474.1|0610037L13Rik|ENSMUSG00000028608.9|RIKEN cDNA 0610037L13 gene
mm10_v2_chr7_+_28540863_28540886	0.0559137	Hoxa11_Hoxc12	ENSMUST00000119180.2|Sycn|ENSMUSG00000084174.2|syncollin
mm10_v2_chr13_-_12464925_12464949	0.0544118	Hoxa11_Hoxc12	ENSMUST00000124888.1|Lgals8|ENSMUSG00000057554.7|lectin, galactose binding, soluble 8
mm10_v2_chr1_-_173227229_173227229	0.0505339	Hoxa11_Hoxc12	ENSMUST00000049706.5|Fcer1a|ENSMUSG00000005339.5|Fc receptor, IgE, high affinity I, alpha polypeptide
mm10_v2_chr9_+_75441518_75441575	0.0499581	Hoxa11_Hoxc12	ENSMUST00000048937.4|Leo1|ENSMUSG00000042487.5|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm10_v2_chr8_+_40307458_40307458	0.0492072	Hoxa11_Hoxc12	ENSMUST00000068999.7|Micu3|ENSMUSG00000039478.9|mitochondrial calcium uptake family, member 3
mm10_v2_chr1_+_182409162_182409184	0.0485651	Hoxa11_Hoxc12	ENSMUST00000117245.1|Trp53bp2|ENSMUSG00000026510.9|transformation related protein 53 binding protein 2
mm10_v2_chr7_+_140247316_140247381	0.0455294	Hoxa11_Hoxc12	ENSMUST00000164583.1|5830411N06Rik|ENSMUSG00000054672.6|RIKEN cDNA 5830411N06 gene 	ENSMUST00000093984.2|5830411N06Rik|ENSMUSG00000054672.6|RIKEN cDNA 5830411N06 gene
mm10_v2_chr11_-_4440745_4440745	0.0454046	Hoxa11_Hoxc12	ENSMUST00000109948.1|Hormad2|ENSMUSG00000020419.5|HORMA domain containing 2
mm10_v2_chr7_+_140247267_140247314	0.0429419	Hoxa11_Hoxc12	ENSMUST00000059882.6|5830411N06Rik|ENSMUSG00000054672.6|RIKEN cDNA 5830411N06 gene
mm10_v2_chr12_-_23780265_23780265	0.0409558	Hoxa11_Hoxc12	ENSMUST00000072014.4|Gm10330|ENSMUSG00000071362.2|predicted gene 10330
mm10_v2_chr4_+_134315112_134315126	0.0396372	Hoxa11_Hoxc12	ENSMUST00000105875.1|Trim63|ENSMUSG00000028834.7|tripartite motif-containing 63 	ENSMUST00000030638.6|Trim63|ENSMUSG00000028834.7|tripartite motif-containing 63
mm10_v2_chr3_+_146150174_146150249	0.0340603	Hoxa11_Hoxc12	ENSMUST00000098524.4|Mcoln2|ENSMUSG00000011008.7|mucolipin 2
mm10_v2_chr3_+_89177463_89177543	0.0330893	Hoxa11_Hoxc12	ENSMUST00000029684.8|Scamp3|ENSMUSG00000028049.9|secretory carrier membrane protein 3 	ENSMUST00000120697.1|Scamp3|ENSMUSG00000028049.9|secretory carrier membrane protein 3 	ENSMUST00000098941.4|Scamp3|ENSMUSG00000028049.9|secretory carrier membrane protein 3
mm10_v2_chr8_-_69625503_69625559	0.0306954	Hoxa11_Hoxc12	ENSMUST00000121886.1|Zfp868|ENSMUSG00000060427.9|zinc finger protein 868
mm10_v2_chr12_-_27160498_27160633	0.0299542	Hoxa11_Hoxc12	ENSMUST00000182592.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866
mm10_v2_chr19_-_7341792_7341829	0.0272206	Hoxa11_Hoxc12	ENSMUST00000164205.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000165286.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000168324.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000032557.8|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2
mm10_v2_chr3_-_142881942_142882017	0.0244419	Hoxa11_Hoxc12	ENSMUST00000043812.8|Pkn2|ENSMUSG00000004591.10|protein kinase N2
mm10_v2_chr2_-_26516620_26516663	0.024259	Hoxa11_Hoxc12	ENSMUST00000132820.1|Notch1|ENSMUSG00000026923.9|notch 1
mm10_v2_chrX_-_7319291_7319358	0.0225725	Hoxa11_Hoxc12	ENSMUST00000128319.1|Clcn5|ENSMUSG00000004317.8|chloride channel 5
mm10_v2_chr13_+_98263187_98263221	0.0220188	Hoxa11_Hoxc12	ENSMUST00000091356.3|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2 	ENSMUST00000123924.1|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2
mm10_v2_chr8_+_104250925_104250940	0.0195229	Hoxa11_Hoxc12	ENSMUST00000098464.4|Cklf|ENSMUSG00000054400.9|chemokine-like factor
mm10_v2_chr10_-_19011948_19011973	0.0194358	Hoxa11_Hoxc12	ENSMUST00000105527.1|Tnfaip3|ENSMUSG00000019850.5|tumor necrosis factor, alpha-induced protein 3
mm10_v2_chr2_-_120970706_120970761	0.0184915	Hoxa11_Hoxc12	ENSMUST00000028728.5|Ubr1|ENSMUSG00000027272.5|ubiquitin protein ligase E3 component n-recognin 1
mm10_v2_chr12_-_27160311_27160476	0.0179619	Hoxa11_Hoxc12	ENSMUST00000182473.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866 	ENSMUST00000177636.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866 	ENSMUST00000183238.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866
mm10_v2_chr19_-_7341848_7341863	0.0129931	Hoxa11_Hoxc12	ENSMUST00000171393.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2
mm10_v2_chr13_-_19732929_19732954	0.0117817	Hoxa11_Hoxc12	ENSMUST00000151029.1|A530099J19Rik|ENSMUSG00000047462.8|RIKEN cDNA A530099J19 gene
mm10_v2_chrX_+_73064787_73064787	0.0113395	Hoxa11_Hoxc12	ENSMUST00000060418.6|Pnma3|ENSMUSG00000046287.6|paraneoplastic antigen MA3
mm10_v2_chr8_+_83290342_83290358	0.0103616	Hoxa11_Hoxc12	ENSMUST00000034146.3|Ucp1|ENSMUSG00000031710.3|uncoupling protein 1 (mitochondrial, proton carrier)
mm10_v2_chr11_+_62458414_62458469	0.0097936	Hoxa11_Hoxc12	ENSMUST00000014389.5|Pigl|ENSMUSG00000014245.8|phosphatidylinositol glycan anchor biosynthesis, class L
mm10_v2_chr4_-_135986917_135987018	0.00967564	Hoxa11_Hoxc12	ENSMUST00000123404.1|Pithd1|ENSMUSG00000028669.9|PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1
mm10_v2_chr6_+_42286709_42286856	0.00957892	Hoxa11_Hoxc12	ENSMUST00000163936.1|Clcn1|ENSMUSG00000029862.9|chloride channel 1
mm10_v2_chr2_+_23207470_23207497	0.0095198	Hoxa11_Hoxc12	ENSMUST00000028113.3|4931423N10Rik|ENSMUSG00000026774.5|RIKEN cDNA 4931423N10 gene 	ENSMUST00000114505.1|4931423N10Rik|ENSMUSG00000026774.5|RIKEN cDNA 4931423N10 gene
mm10_v2_chr16_-_56024628_56024668	0.00900053	Hoxa11_Hoxc12	ENSMUST00000119981.1|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein 	ENSMUST00000096021.3|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein
mm10_v2_chr13_+_98263242_98263302	0.00802346	Hoxa11_Hoxc12	ENSMUST00000022164.8|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2 	ENSMUST00000150352.1|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2
mm10_v2_chr3_+_32436376_32436376	0.00570449	Hoxa11_Hoxc12	ENSMUST00000108242.1|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr6_-_142473075_142473115	0.00462848	Hoxa11_Hoxc12	ENSMUST00000032371.7|Gys2|ENSMUSG00000030244.7|glycogen synthase 2
mm10_v2_chr5_+_150018675_150018799	0.00437133	Hoxa11_Hoxc12	ENSMUST00000065745.3|Rxfp2|ENSMUSG00000053368.7|relaxin/insulin-like family peptide receptor 2 	ENSMUST00000110496.1|Rxfp2|ENSMUSG00000053368.7|relaxin/insulin-like family peptide receptor 2
mm10_v2_chr9_-_110946158_110946158	0.00319608	Hoxa11_Hoxc12	ENSMUST00000035075.8|Tdgf1|ENSMUSG00000032494.8|teratocarcinoma-derived growth factor 1
mm10_v2_chr1_-_144567667_144567667	0.00300028	Hoxa11_Hoxc12	ENSMUST00000184008.1|Rgs21|ENSMUSG00000098509.1|regulator of G-protein signalling 21
mm10_v2_chr6_+_42286676_42286687	0.000562304	Hoxa11_Hoxc12	ENSMUST00000031894.6|Clcn1|ENSMUSG00000029862.9|chloride channel 1
mm10_v2_chr9_-_44407526_44407551	1.95495e-05	Hoxa11_Hoxc12	ENSMUST00000034623.6|Trappc4|ENSMUSG00000032112.9|trafficking protein particle complex 4
