mm10_v2_chr2_+_70563435_70563461	1.36231	Hoxa4	ENSMUST00000123330.1|Gad1|ENSMUSG00000070880.4|glutamate decarboxylase 1
mm10_v2_chr18_+_37489465_37489465	1.11281	Hoxa4	ENSMUST00000055949.2|Pcdhb18|ENSMUSG00000048347.4|protocadherin beta 18
mm10_v2_chr3_+_115080965_115081036	1.10314	Hoxa4	ENSMUST00000051309.8|Olfm3|ENSMUSG00000027965.9|olfactomedin 3
mm10_v2_chr2_+_170731807_170731920	1.06007	Hoxa4	ENSMUST00000029075.4|Dok5|ENSMUSG00000027560.4|docking protein 5
mm10_v2_chr15_+_10249560_10249577	1.0362	Hoxa4	ENSMUST00000134410.1|Prlr|ENSMUSG00000005268.14|prolactin receptor
mm10_v2_chr6_+_43265582_43265681	1.00141	Hoxa4	ENSMUST00000031750.7|Arhgef5|ENSMUSG00000033542.7|Rho guanine nucleotide exchange factor (GEF) 5
mm10_v2_chr2_+_90885860_90885872	0.996039	Hoxa4	ENSMUST00000111466.2|C1qtnf4|ENSMUSG00000040794.5|C1q and tumor necrosis factor related protein 4
mm10_v2_chr19_-_42752710_42752775	0.982367	Hoxa4	ENSMUST00000076505.3|Pyroxd2|ENSMUSG00000060224.3|pyridine nucleotide-disulphide oxidoreductase domain 2
mm10_v2_chr13_+_23555023_23555039	0.897703	Hoxa4	ENSMUST00000045301.6|Hist1h1d|ENSMUSG00000052565.5|histone cluster 1, H1d
mm10_v2_chr12_+_69790288_69790288	0.888807	Hoxa4	ENSMUST00000021378.3|4930512B01Rik|ENSMUSG00000020992.3|RIKEN cDNA 4930512B01 gene
mm10_v2_chr16_+_22857845_22857914	0.865054	Hoxa4	ENSMUST00000004574.7|Dnajb11|ENSMUSG00000004460.10|DnaJ (Hsp40) homolog, subfamily B, member 11 	ENSMUST00000178320.1|Dnajb11|ENSMUSG00000004460.10|DnaJ (Hsp40) homolog, subfamily B, member 11 	ENSMUST00000166487.2|Dnajb11|ENSMUSG00000004460.10|DnaJ (Hsp40) homolog, subfamily B, member 11
mm10_v2_chr13_+_89540636_89540678	0.853904	Hoxa4	ENSMUST00000022108.7|Hapln1|ENSMUSG00000021613.8|hyaluronan and proteoglycan link protein 1
mm10_v2_chr9_-_121792478_121792507	0.791314	Hoxa4	ENSMUST00000035110.4|Hhatl|ENSMUSG00000032523.4|hedgehog acyltransferase-like
mm10_v2_chr7_-_100855403_100855440	0.762394	Hoxa4	ENSMUST00000156855.1|Relt|ENSMUSG00000008318.3|RELT tumor necrosis factor receptor
mm10_v2_chr18_+_37447641_37447674	0.737329	Hoxa4	ENSMUST00000052387.3|Pcdhb14|ENSMUSG00000044043.3|protocadherin beta 14
mm10_v2_chr6_+_5390387_5390427	0.720111	Hoxa4	ENSMUST00000183358.1|Asb4|ENSMUSG00000042607.9|ankyrin repeat and SOCS box-containing 4
mm10_v2_chrX_+_159840463_159840481	0.698782	Hoxa4	ENSMUST00000112451.1|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1 	ENSMUST00000112453.2|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr4_-_62519885_62519967	0.693475	Hoxa4	ENSMUST00000107444.1|Alad|ENSMUSG00000028393.4|aminolevulinate, delta-, dehydratase 	ENSMUST00000030090.3|Alad|ENSMUSG00000028393.4|aminolevulinate, delta-, dehydratase
mm10_v2_chr13_+_42680565_42680623	0.688762	Hoxa4	ENSMUST00000128646.1|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1
mm10_v2_chrX_-_38252398_38252439	0.669737	Hoxa4	ENSMUST00000089056.3|Tmem255a|ENSMUSG00000036502.8|transmembrane protein 255A 	ENSMUST00000089054.4|Tmem255a|ENSMUSG00000036502.8|transmembrane protein 255A 	ENSMUST00000066498.7|Tmem255a|ENSMUSG00000036502.8|transmembrane protein 255A
mm10_v2_chr18_+_76059458_76059501	0.651056	Hoxa4	ENSMUST00000167921.1|Zbtb7c|ENSMUSG00000044646.8|zinc finger and BTB domain containing 7C
mm10_v2_chr15_-_34356421_34356421	0.646861	Hoxa4	ENSMUST00000179647.1|9430069I07Rik|ENSMUSG00000094447.1|RIKEN cDNA 9430069I07 gene
mm10_v2_chr13_-_102905740_102905814	0.631291	Hoxa4	ENSMUST00000167462.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr17_+_39846958_39847059	0.619973	Hoxa4	ENSMUST00000182010.1|Gm26924|ENSMUSG00000098178.1|predicted gene, 26924
mm10_v2_chr13_-_102906046_102906111	0.593438	Hoxa4	ENSMUST00000171791.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr6_-_138426735_138426816	0.567985	Hoxa4	ENSMUST00000162932.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3
mm10_v2_chr1_+_165301863_165301863	0.566496	Hoxa4	ENSMUST00000178700.1|Gpr161|ENSMUSG00000040836.9|G protein-coupled receptor 161
mm10_v2_chr9_-_50555170_50555183	0.553361	Hoxa4	ENSMUST00000119103.1|Bco2|ENSMUSG00000032066.9|beta-carotene oxygenase 2
mm10_v2_chr1_+_109983737_109983737	0.5412	Hoxa4	ENSMUST00000172005.1|Cdh7|ENSMUSG00000026312.11|cadherin 7, type 2
mm10_v2_chr14_-_108914237_108914257	0.525658	Hoxa4	ENSMUST00000100322.2|Slitrk1|ENSMUSG00000075478.2|SLIT and NTRK-like family, member 1
mm10_v2_chr1_-_130729249_130729260	0.524481	Hoxa4	ENSMUST00000171479.1|Pfkfb2|ENSMUSG00000026409.8|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
mm10_v2_chr13_+_58807884_58807902	0.508247	Hoxa4	ENSMUST00000079828.5|Ntrk2|ENSMUSG00000055254.8|neurotrophic tyrosine kinase, receptor, type 2
mm10_v2_chr14_+_44988192_44988203	0.492961	Hoxa4	ENSMUST00000046891.5|Ptger2|ENSMUSG00000037759.5|prostaglandin E receptor 2 (subtype EP2)
mm10_v2_chr2_+_147187424_147187424	0.479231	Hoxa4	ENSMUST00000144411.1|6430503K07Rik|ENSMUSG00000053545.6|RIKEN cDNA 6430503K07 gene
mm10_v2_chr3_-_122619442_122619553	0.463721	Hoxa4	ENSMUST00000162947.1|Fnbp1l|ENSMUSG00000039735.9|formin binding protein 1-like
mm10_v2_chr17_-_29078953_29078972	0.459916	Hoxa4	ENSMUST00000133221.1|Trp53cor1|ENSMUSG00000085912.1|tumor protein p53 pathway corepressor 1
mm10_v2_chr19_-_57197556_57197631	0.455854	Hoxa4	ENSMUST00000099294.2|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr7_+_90426312_90426312	0.436904	Hoxa4	ENSMUST00000061391.7|Ccdc89|ENSMUSG00000044362.7|coiled-coil domain containing 89
mm10_v2_chr7_+_51878967_51879000	0.429925	Hoxa4	ENSMUST00000051912.6|Gas2|ENSMUSG00000030498.8|growth arrest specific 2
mm10_v2_chr10_-_64090265_64090297	0.429263	Hoxa4	ENSMUST00000105439.1|Lrrtm3|ENSMUSG00000042846.8|leucine rich repeat transmembrane neuronal 3
mm10_v2_chr12_+_59129757_59129818	0.426853	Hoxa4	ENSMUST00000069430.8|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5 	ENSMUST00000177370.1|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5
mm10_v2_chr12_+_52516077_52516077	0.417635	Hoxa4	ENSMUST00000110725.1|Arhgap5|ENSMUSG00000035133.8|Rho GTPase activating protein 5
mm10_v2_chr12_+_55598917_55598917	0.41583	Hoxa4	ENSMUST00000051857.3|Insm2|ENSMUSG00000045440.3|insulinoma-associated 2
mm10_v2_chr16_+_17331371_17331427	0.413794	Hoxa4	ENSMUST00000023450.6|Serpind1|ENSMUSG00000022766.6|serine (or cysteine) peptidase inhibitor, clade D, member 1 	ENSMUST00000161034.1|Serpind1|ENSMUSG00000022766.6|serine (or cysteine) peptidase inhibitor, clade D, member 1
mm10_v2_chr7_-_109731708_109731732	0.402282	Hoxa4	ENSMUST00000035372.1|Ascl3|ENSMUSG00000035951.1|achaete-scute complex homolog 3 (Drosophila)
mm10_v2_chr6_-_52012476_52012551	0.399867	Hoxa4	ENSMUST00000078214.5|Skap2|ENSMUSG00000059182.5|src family associated phosphoprotein 2
mm10_v2_chr4_+_114821722_114821722	0.398568	Hoxa4	ENSMUST00000137570.1|Gm12830|ENSMUSG00000055198.3|predicted gene 12830
mm10_v2_chr19_+_11965817_11965887	0.384892	Hoxa4	ENSMUST00000025590.9|Osbp|ENSMUSG00000024687.10|oxysterol binding protein
mm10_v2_chr7_+_51879041_51879064	0.375142	Hoxa4	ENSMUST00000107591.2|Gas2|ENSMUSG00000030498.8|growth arrest specific 2
mm10_v2_chr17_-_84187939_84187954	0.368941	Hoxa4	ENSMUST00000060366.6|Zfp36l2|ENSMUSG00000045817.8|zinc finger protein 36, C3H type-like 2
mm10_v2_chr4_+_19280850_19280907	0.368001	Hoxa4	ENSMUST00000102999.1|Cngb3|ENSMUSG00000056494.7|cyclic nucleotide gated channel beta 3
mm10_v2_chr19_-_57197435_57197460	0.365081	Hoxa4	ENSMUST00000111550.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr12_+_59129720_59129755	0.364202	Hoxa4	ENSMUST00000175912.1|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5 	ENSMUST00000176892.1|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5
mm10_v2_chr11_+_94328242_94328261	0.355158	Hoxa4	ENSMUST00000021227.5|Ankrd40|ENSMUSG00000020864.7|ankyrin repeat domain 40
mm10_v2_chr13_-_102958084_102958173	0.34288	Hoxa4	ENSMUST00000099202.3|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4 	ENSMUST00000172264.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr17_+_6007580_6007624	0.339092	Hoxa4	ENSMUST00000115784.1|Synj2|ENSMUSG00000023805.10|synaptojanin 2 	ENSMUST00000115785.1|Synj2|ENSMUSG00000023805.10|synaptojanin 2
mm10_v2_chr11_+_94327984_94328029	0.338739	Hoxa4	ENSMUST00000107818.2|Ankrd40|ENSMUSG00000020864.7|ankyrin repeat domain 40 	ENSMUST00000051221.6|Ankrd40|ENSMUSG00000020864.7|ankyrin repeat domain 40
mm10_v2_chr6_+_72304592_72304623	0.338539	Hoxa4	ENSMUST00000183018.1|Sftpb|ENSMUSG00000056370.9|surfactant associated protein B
mm10_v2_chr19_-_57197377_57197417	0.333253	Hoxa4	ENSMUST00000111546.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr10_-_24092320_24092320	0.333174	Hoxa4	ENSMUST00000092654.2|Taar8b|ENSMUSG00000092113.1|trace amine-associated receptor 8B
mm10_v2_chr19_-_28967794_28967852	0.330751	Hoxa4	ENSMUST00000162110.1|4430402I18Rik|ENSMUSG00000064202.9|RIKEN cDNA 4430402I18 gene
mm10_v2_chr11_-_30268169_30268191	0.325673	Hoxa4	ENSMUST00000006629.7|Sptbn1|ENSMUSG00000020315.12|spectrin beta, non-erythrocytic 1
mm10_v2_chr16_-_22857514_22857576	0.318937	Hoxa4	ENSMUST00000004576.6|Tbccd1|ENSMUSG00000004462.6|TBCC domain containing 1
mm10_v2_chr2_+_4400958_4400975	0.317991	Hoxa4	ENSMUST00000075767.7|Frmd4a|ENSMUSG00000026657.10|FERM domain containing 4A
mm10_v2_chr6_-_92534855_92534890	0.316517	Hoxa4	ENSMUST00000113446.1|Prickle2|ENSMUSG00000030020.7|prickle homolog 2 (Drosophila)
mm10_v2_chr5_+_137030275_137030295	0.308531	Hoxa4	ENSMUST00000041543.8|Vgf|ENSMUSG00000037428.8|VGF nerve growth factor inducible
mm10_v2_chr16_-_36990449_36990467	0.305681	Hoxa4	ENSMUST00000075869.6|Fbxo40|ENSMUSG00000047746.8|F-box protein 40
mm10_v2_chr19_-_57197496_57197536	0.299894	Hoxa4	ENSMUST00000111544.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr6_+_77242644_77242697	0.293698	Hoxa4	ENSMUST00000159616.1|Lrrtm1|ENSMUSG00000060780.2|leucine rich repeat transmembrane neuronal 1
mm10_v2_chr10_-_127121125_127121160	0.291855	Hoxa4	ENSMUST00000164259.1|Os9|ENSMUSG00000040462.6|amplified in osteosarcoma 	ENSMUST00000080975.4|Os9|ENSMUSG00000040462.6|amplified in osteosarcoma
mm10_v2_chrX_+_48623737_48623790	0.291743	Hoxa4	ENSMUST00000114936.1|Slc25a14|ENSMUSG00000031105.10|solute carrier family 25 (mitochondrial carrier, brain), member 14
mm10_v2_chr4_+_144893127_144893151	0.291714	Hoxa4	ENSMUST00000142808.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr6_+_77242715_77242729	0.290176	Hoxa4	ENSMUST00000161677.1|Lrrtm1|ENSMUSG00000060780.2|leucine rich repeat transmembrane neuronal 1
mm10_v2_chr13_-_55362782_55362804	0.286272	Hoxa4	ENSMUST00000021940.7|Lman2|ENSMUSG00000021484.7|lectin, mannose-binding 2
mm10_v2_chr8_+_46986913_46986962	0.281116	Hoxa4	ENSMUST00000039840.7|Enpp6|ENSMUSG00000038173.8|ectonucleotide pyrophosphatase/phosphodiesterase 6 	ENSMUST00000119686.1|Enpp6|ENSMUSG00000038173.8|ectonucleotide pyrophosphatase/phosphodiesterase 6
mm10_v2_chr14_+_79515618_79515694	0.277875	Hoxa4	ENSMUST00000110835.1|Elf1|ENSMUSG00000036461.9|E74-like factor 1
mm10_v2_chr4_+_5724304_5724357	0.273405	Hoxa4	ENSMUST00000108380.1|Fam110b|ENSMUSG00000049119.8|family with sequence similarity 110, member B
mm10_v2_chr3_+_134236483_134236500	0.273074	Hoxa4	ENSMUST00000181904.1|Cxxc4|ENSMUSG00000044365.10|CXXC finger 4 	ENSMUST00000053048.9|Cxxc4|ENSMUSG00000044365.10|CXXC finger 4
mm10_v2_chr10_+_39612934_39612934	0.272198	Hoxa4	ENSMUST00000019987.6|Traf3ip2|ENSMUSG00000019842.6|TRAF3 interacting protein 2
mm10_v2_chr4_-_134372529_134372561	0.269231	Hoxa4	ENSMUST00000030643.2|Extl1|ENSMUSG00000028838.5|exostoses (multiple)-like 1
mm10_v2_chr1_-_93478785_93478823	0.264221	Hoxa4	ENSMUST00000170883.1|Hdlbp|ENSMUSG00000034088.9|high density lipoprotein (HDL) binding protein
mm10_v2_chr8_-_67974567_67974596	0.262902	Hoxa4	ENSMUST00000098696.3|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000038959.9|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000093469.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr3_+_41564880_41564933	0.260132	Hoxa4	ENSMUST00000168086.1|Phf17|ENSMUSG00000025764.8|PHD finger protein 17
mm10_v2_chr4_-_129378116_129378116	0.257777	Hoxa4	ENSMUST00000030610.2|Zbtb8a|ENSMUSG00000028807.2|zinc finger and BTB domain containing 8a
mm10_v2_chr11_-_49114874_49114874	0.25593	Hoxa4	ENSMUST00000109201.1|Olfr1396|ENSMUSG00000047511.2|olfactory receptor 1396
mm10_v2_chr10_-_128525859_128525880	0.253471	Hoxa4	ENSMUST00000026427.6|Esyt1|ENSMUSG00000025366.7|extended synaptotagmin-like protein 1
mm10_v2_chr10_-_93311073_93311161	0.253003	Hoxa4	ENSMUST00000008542.5|Elk3|ENSMUSG00000008398.8|ELK3, member of ETS oncogene family
mm10_v2_chrX_+_56454871_56454887	0.252789	Hoxa4	ENSMUST00000039374.2|Ddx26b|ENSMUSG00000035967.9|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B 	ENSMUST00000101553.2|Ddx26b|ENSMUSG00000035967.9|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B
mm10_v2_chr11_-_116189542_116189575	0.247468	Hoxa4	ENSMUST00000148601.1|Acox1|ENSMUSG00000020777.10|acyl-Coenzyme A oxidase 1, palmitoyl
mm10_v2_chr18_+_37355271_37355271	0.24715	Hoxa4	ENSMUST00000051163.1|Pcdhb8|ENSMUSG00000045876.3|protocadherin beta 8
mm10_v2_chr1_-_5070281_5070288	0.244738	Hoxa4	ENSMUST00000147158.1|Rgs20|ENSMUSG00000002459.11|regulator of G-protein signaling 20 	ENSMUST00000118000.1|Rgs20|ENSMUSG00000002459.11|regulator of G-protein signaling 20
mm10_v2_chr5_+_17574726_17574899	0.242227	Hoxa4	ENSMUST00000169603.1|Sema3c|ENSMUSG00000028780.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
mm10_v2_chr17_+_45734506_45734630	0.237568	Hoxa4	ENSMUST00000180558.1|F630040K05Rik|ENSMUSG00000097727.1|RIKEN cDNA F630040K05 gene
mm10_v2_chr5_-_122614445_122614544	0.236662	Hoxa4	ENSMUST00000127220.1|Ift81|ENSMUSG00000029469.8|intraflagellar transport 81 	ENSMUST00000031426.7|Ift81|ENSMUSG00000029469.8|intraflagellar transport 81
mm10_v2_chr6_+_56832059_56832160	0.233869	Hoxa4	ENSMUST00000031795.7|Fkbp9|ENSMUSG00000029781.7|FK506 binding protein 9
mm10_v2_chr4_-_3872105_3872105	0.232114	Hoxa4	ENSMUST00000105158.1|Mos|ENSMUSG00000078365.5|Moloney sarcoma oncogene
mm10_v2_chr18_+_37435602_37435636	0.230465	Hoxa4	ENSMUST00000055495.5|Pcdhb12|ENSMUSG00000043458.5|protocadherin beta 12
mm10_v2_chr6_-_41035501_41035514	0.224551	Hoxa4	ENSMUST00000031931.5|2210010C04Rik|ENSMUSG00000029882.5|RIKEN cDNA 2210010C04 gene
mm10_v2_chr18_+_37819543_37819570	0.223325	Hoxa4	ENSMUST00000055935.5|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr16_+_4639941_4639978	0.216365	Hoxa4	ENSMUST00000038770.3|Vasn|ENSMUSG00000039646.5|vasorin
mm10_v2_chr10_+_127501707_127501726	0.216035	Hoxa4	ENSMUST00000035839.2|Stac3|ENSMUSG00000040287.3|SH3 and cysteine rich domain 3
mm10_v2_chr7_-_35056467_35056556	0.21437	Hoxa4	ENSMUST00000130491.1|Cebpg|ENSMUSG00000056216.8|CCAAT/enhancer binding protein (C/EBP), gamma
mm10_v2_chr12_+_109546333_109546398	0.210013	Hoxa4	ENSMUST00000166636.2|Meg3|ENSMUSG00000021268.11|maternally expressed 3
mm10_v2_chr12_-_84361802_84361838	0.208065	Hoxa4	ENSMUST00000021659.1|Fam161b|ENSMUSG00000021234.3|family with sequence similarity 161, member B 	ENSMUST00000065536.2|Fam161b|ENSMUSG00000021234.3|family with sequence similarity 161, member B
mm10_v2_chrX_-_112698642_112698657	0.20337	Hoxa4	ENSMUST00000039887.3|Pof1b|ENSMUSG00000034607.6|premature ovarian failure 1B
mm10_v2_chr18_-_37178493_37178531	0.202204	Hoxa4	ENSMUST00000181887.1|Gm10544|ENSMUSG00000097430.1|predicted gene 10544 	ENSMUST00000180516.1|Gm10544|ENSMUSG00000097430.1|predicted gene 10544
mm10_v2_chr10_+_127501672_127501706	0.197522	Hoxa4	ENSMUST00000160019.1|Stac3|ENSMUSG00000040287.3|SH3 and cysteine rich domain 3 	ENSMUST00000160610.1|Stac3|ENSMUSG00000040287.3|SH3 and cysteine rich domain 3
mm10_v2_chr4_+_86575668_86575689	0.197041	Hoxa4	ENSMUST00000091064.6|Rraga|ENSMUSG00000070934.5|Ras-related GTP binding A
mm10_v2_chr12_+_10390756_10390836	0.194262	Hoxa4	ENSMUST00000020947.5|Rdh14|ENSMUSG00000020621.5|retinol dehydrogenase 14 (all-trans and 9-cis)
mm10_v2_chr3_+_5218546_5218561	0.193995	Hoxa4	ENSMUST00000026284.6|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr6_+_58833689_58833734	0.18896	Hoxa4	ENSMUST00000041401.8|Herc3|ENSMUSG00000029804.10|hect domain and RLD 3
mm10_v2_chr10_+_102158858_102158889	0.183356	Hoxa4	ENSMUST00000138522.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENSMUST00000163753.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENSMUST00000138016.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
mm10_v2_chr1_-_110977366_110977382	0.183047	Hoxa4	ENSMUST00000094626.3|Cdh19|ENSMUSG00000047216.7|cadherin 19, type 2
mm10_v2_chrX_+_20687954_20688039	0.182573	Hoxa4	ENSMUST00000115364.1|Cdk16|ENSMUSG00000031065.8|cyclin-dependent kinase 16
mm10_v2_chr2_-_93849679_93849836	0.182161	Hoxa4	ENSMUST00000068513.4|Accs|ENSMUSG00000040272.8|1-aminocyclopropane-1-carboxylate synthase (non-functional) 	ENSMUST00000041593.8|Accs|ENSMUSG00000040272.8|1-aminocyclopropane-1-carboxylate synthase (non-functional) 	ENSMUST00000130077.1|Accs|ENSMUSG00000040272.8|1-aminocyclopropane-1-carboxylate synthase (non-functional)
mm10_v2_chr1_+_172555932_172555942	0.180167	Hoxa4	ENSMUST00000061835.3|Vsig8|ENSMUSG00000049598.3|V-set and immunoglobulin domain containing 8
mm10_v2_chr19_+_31868754_31868787	0.179073	Hoxa4	ENSMUST00000075838.5|A1cf|ENSMUSG00000052595.6|APOBEC1 complementation factor
mm10_v2_chr7_+_144838590_144838614	0.178617	Hoxa4	ENSMUST00000105898.1|Fgf3|ENSMUSG00000031074.8|fibroblast growth factor 3
mm10_v2_chr17_+_80307396_80307413	0.169668	Hoxa4	ENSMUST00000068175.5|Arhgef33|ENSMUSG00000054901.5|Rho guanine nucleotide exchange factor (GEF) 33
mm10_v2_chr5_-_146220901_146220987	0.169448	Hoxa4	ENSMUST00000169407.2|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000161331.1|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000159074.2|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000067837.3|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6
mm10_v2_chr14_+_27000362_27000507	0.163448	Hoxa4	ENSMUST00000035433.8|Hesx1|ENSMUSG00000040726.8|homeobox gene expressed in ES cells
mm10_v2_chr6_-_56901870_56901891	0.162159	Hoxa4	ENSMUST00000101367.2|Nt5c3|ENSMUSG00000029780.8|5'-nucleotidase, cytosolic III
mm10_v2_chr10_+_127420334_127420348	0.162072	Hoxa4	ENSMUST00000171434.1|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chr4_+_134068429_134068452	0.161842	Hoxa4	ENSMUST00000121391.1|Aim1l|ENSMUSG00000012123.9|absent in melanoma 1-like
mm10_v2_chr11_+_83852135_83852242	0.161587	Hoxa4	ENSMUST00000146786.1|Hnf1b|ENSMUSG00000020679.5|HNF1 homeobox B
mm10_v2_chr9_+_75775355_75775378	0.157603	Hoxa4	ENSMUST00000012281.7|Bmp5|ENSMUSG00000032179.7|bone morphogenetic protein 5
mm10_v2_chr6_+_72304625_72304645	0.155164	Hoxa4	ENSMUST00000070437.8|Sftpb|ENSMUSG00000056370.9|surfactant associated protein B
mm10_v2_chr19_+_55894508_55894534	0.153435	Hoxa4	ENSMUST00000142291.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr17_+_24470393_24470481	0.144926	Hoxa4	ENSMUST00000053024.6|Pgp|ENSMUSG00000043445.6|phosphoglycolate phosphatase
mm10_v2_chr6_+_106118924_106119006	0.144053	Hoxa4	ENSMUST00000079416.5|Cntn4|ENSMUSG00000064293.8|contactin 4
mm10_v2_chr9_+_77636494_77636528	0.143748	Hoxa4	ENSMUST00000057781.7|Klhl31|ENSMUSG00000044938.8|kelch-like 31
mm10_v2_chr2_-_6884940_6884957	0.143349	Hoxa4	ENSMUST00000183091.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000182851.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr12_+_109546409_109546493	0.141816	Hoxa4	ENSMUST00000143847.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3
mm10_v2_chr1_+_74284930_74285072	0.140477	Hoxa4	ENSMUST00000113805.1|Pnkd|ENSMUSG00000026179.8|paroxysmal nonkinesiogenic dyskinesia 	ENSMUST00000027370.6|Pnkd|ENSMUSG00000026179.8|paroxysmal nonkinesiogenic dyskinesia 	ENSMUST00000087226.4|Pnkd|ENSMUSG00000026179.8|paroxysmal nonkinesiogenic dyskinesia
mm10_v2_chr6_+_124916863_124916863	0.140251	Hoxa4	ENSMUST00000069553.2|A230083G16Rik|ENSMUSG00000055818.2|RIKEN cDNA A230083G16 gene
mm10_v2_chr9_-_49798729_49798855	0.139682	Hoxa4	ENSMUST00000166811.2|Ncam1|ENSMUSG00000039542.9|neural cell adhesion molecule 1
mm10_v2_chr3_+_5218516_5218544	0.138226	Hoxa4	ENSMUST00000175866.1|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr5_-_100373484_100373527	0.137778	Hoxa4	ENSMUST00000182433.1|Sec31a|ENSMUSG00000035325.10|Sec31 homolog A (S. cerevisiae)
mm10_v2_chr1_-_86110672_86110761	0.137633	Hoxa4	ENSMUST00000155077.1|Htr2b|ENSMUSG00000026228.6|5-hydroxytryptamine (serotonin) receptor 2B
mm10_v2_chr7_-_34654342_34654398	0.136695	Hoxa4	ENSMUST00000108069.1|Kctd15|ENSMUSG00000030499.3|potassium channel tetramerisation domain containing 15
mm10_v2_chr18_-_15063560_15063617	0.135935	Hoxa4	ENSMUST00000168989.1|Kctd1|ENSMUSG00000036225.8|potassium channel tetramerisation domain containing 1
mm10_v2_chr1_-_23909687_23909706	0.135455	Hoxa4	ENSMUST00000129254.1|Smap1|ENSMUSG00000026155.7|small ArfGAP 1
mm10_v2_chr2_+_70474923_70474923	0.134921	Hoxa4	ENSMUST00000100043.2|Sp5|ENSMUSG00000075304.2|trans-acting transcription factor 5
mm10_v2_chr9_-_65885024_65885069	0.13271	Hoxa4	ENSMUST00000122410.1|Trip4|ENSMUSG00000032386.9|thyroid hormone receptor interactor 4 	ENSMUST00000117083.1|Trip4|ENSMUSG00000032386.9|thyroid hormone receptor interactor 4
mm10_v2_chr17_+_43667389_43667425	0.131619	Hoxa4	ENSMUST00000170988.1|Cyp39a1|ENSMUSG00000023963.9|cytochrome P450, family 39, subfamily a, polypeptide 1
mm10_v2_chr4_+_144892813_144892835	0.131395	Hoxa4	ENSMUST00000105744.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3 	ENSMUST00000171001.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr18_+_86711520_86711650	0.130861	Hoxa4	ENSMUST00000122464.1|Cbln2|ENSMUSG00000024647.8|cerebellin 2 precursor protein
mm10_v2_chr3_-_146781351_146781431	0.130154	Hoxa4	ENSMUST00000005164.7|Prkacb|ENSMUSG00000005034.9|protein kinase, cAMP dependent, catalytic, beta
mm10_v2_chr7_+_135268579_135268619	0.127365	Hoxa4	ENSMUST00000097983.3|Nps|ENSMUSG00000073804.3|neuropeptide S
mm10_v2_chr11_-_21572193_21572211	0.12672	Hoxa4	ENSMUST00000102874.4|Mdh1|ENSMUSG00000020321.9|malate dehydrogenase 1, NAD (soluble)
mm10_v2_chr3_+_93442330_93442389	0.124273	Hoxa4	ENSMUST00000064257.5|Tchh|ENSMUSG00000052415.5|trichohyalin
mm10_v2_chr18_+_23752333_23752401	0.121068	Hoxa4	ENSMUST00000170802.1|Mapre2|ENSMUSG00000024277.8|microtubule-associated protein, RP/EB family, member 2 	ENSMUST00000155708.1|Mapre2|ENSMUSG00000024277.8|microtubule-associated protein, RP/EB family, member 2 	ENSMUST00000118826.2|Mapre2|ENSMUSG00000024277.8|microtubule-associated protein, RP/EB family, member 2
mm10_v2_chr14_+_46832127_46832151	0.12062	Hoxa4	ENSMUST00000068532.8|Cgrrf1|ENSMUSG00000055128.8|cell growth regulator with ring finger domain 1
mm10_v2_chr14_+_65266701_65266752	0.119951	Hoxa4	ENSMUST00000169656.1|Fbxo16|ENSMUSG00000034532.8|F-box protein 16
mm10_v2_chr3_-_88177671_88177785	0.119411	Hoxa4	ENSMUST00000181837.1|1700113A16Rik|ENSMUSG00000096935.1|RIKEN cDNA 1700113A16 gene
mm10_v2_chr7_+_34251038_34251038	0.118572	Hoxa4	ENSMUST00000105172.1|Gm6096|ENSMUSG00000078380.1|predicted gene 6096
mm10_v2_chr11_-_121673103_121673153	0.117026	Hoxa4	ENSMUST00000067399.7|B3gntl1|ENSMUSG00000046605.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 	ENSMUST00000062654.7|B3gntl1|ENSMUSG00000046605.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1
mm10_v2_chr2_-_116065047_116065133	0.115841	Hoxa4	ENSMUST00000028639.6|Meis2|ENSMUSG00000027210.14|Meis homeobox 2 	ENSMUST00000102538.4|Meis2|ENSMUSG00000027210.14|Meis homeobox 2
mm10_v2_chr18_+_37307445_37307462	0.115432	Hoxa4	ENSMUST00000056712.2|Pcdhb4|ENSMUSG00000045689.2|protocadherin beta 4
mm10_v2_chr1_+_180101144_180101144	0.11369	Hoxa4	ENSMUST00000133890.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha
mm10_v2_chr11_-_99322943_99322957	0.112266	Hoxa4	ENSMUST00000038004.2|Krt25|ENSMUSG00000035831.2|keratin 25
mm10_v2_chr7_+_64185459_64185601	0.110032	Hoxa4	ENSMUST00000177102.2|Trpm1|ENSMUSG00000030523.12|transient receptor potential cation channel, subfamily M, member 1 	ENSMUST00000107519.1|Trpm1|ENSMUSG00000030523.12|transient receptor potential cation channel, subfamily M, member 1 	ENSMUST00000137650.1|Trpm1|ENSMUSG00000030523.12|transient receptor potential cation channel, subfamily M, member 1 	ENSMUST00000032737.5|Trpm1|ENSMUSG00000030523.12|transient receptor potential cation channel, subfamily M, member 1 	ENSMUST00000107515.1|Trpm1|ENSMUSG00000030523.12|transient receptor potential cation channel, subfamily M, member 1 	ENSMUST00000144996.1|Trpm1|ENSMUSG00000030523.12|transient receptor potential cation channel, subfamily M, member 1
mm10_v2_chr9_-_49798905_49798931	0.109768	Hoxa4	ENSMUST00000114476.2|Ncam1|ENSMUSG00000039542.9|neural cell adhesion molecule 1
mm10_v2_chr1_+_180111339_180111339	0.108251	Hoxa4	ENSMUST00000145181.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha
mm10_v2_chr2_+_93452796_93452833	0.107308	Hoxa4	ENSMUST00000099693.2|Gm10804|ENSMUSG00000075025.4|predicted gene 10804 	ENSMUST00000162565.1|Gm10804|ENSMUSG00000075025.4|predicted gene 10804 	ENSMUST00000163052.1|Gm10804|ENSMUSG00000075025.4|predicted gene 10804
mm10_v2_chr5_+_105824511_105824511	0.10382	Hoxa4	ENSMUST00000055994.3|D830014E11Rik|ENSMUSG00000045750.3|RIKEN cDNA D830014E11 gene
mm10_v2_chr18_+_46925982_46925982	0.103537	Hoxa4	ENSMUST00000097580.1|Arl14epl|ENSMUSG00000073568.1|ADP-ribosylation factor-like 14 effector protein-like
mm10_v2_chr10_-_64090241_64090262	0.102989	Hoxa4	ENSMUST00000133588.1|Lrrtm3|ENSMUSG00000042846.8|leucine rich repeat transmembrane neuronal 3
mm10_v2_chr7_-_142661858_142661880	0.0992934	Hoxa4	ENSMUST00000145896.2|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr4_-_60222580_60222599	0.0981693	Hoxa4	ENSMUST00000095058.4|Mup8|ENSMUSG00000078687.3|major urinary protein 8 	ENSMUST00000163931.1|Mup8|ENSMUSG00000078687.3|major urinary protein 8
mm10_v2_chr6_+_29467718_29467764	0.0979805	Hoxa4	ENSMUST00000004396.6|Atp6v1f|ENSMUSG00000004285.6|ATPase, H+ transporting, lysosomal V1 subunit F
mm10_v2_chr2_-_6884975_6884996	0.0976044	Hoxa4	ENSMUST00000114924.3|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000170438.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000114934.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr16_-_50432340_50432409	0.0975071	Hoxa4	ENSMUST00000066037.6|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089399.4|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089404.3|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000114477.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000138166.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila)
mm10_v2_chr1_+_130731963_130731991	0.0967047	Hoxa4	ENSMUST00000039323.6|AA986860|ENSMUSG00000042510.6|expressed sequence AA986860
mm10_v2_chr6_+_97210689_97210728	0.0949799	Hoxa4	ENSMUST00000044681.6|Arl6ip5|ENSMUSG00000035199.6|ADP-ribosylation factor-like 6 interacting protein 5
mm10_v2_chr5_-_137531204_137531297	0.0938109	Hoxa4	ENSMUST00000150063.2|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr11_+_57011945_57011956	0.0919949	Hoxa4	ENSMUST00000094179.4|Gria1|ENSMUSG00000020524.10|glutamate receptor, ionotropic, AMPA1 (alpha 1)
mm10_v2_chrX_-_9469288_9469331	0.0917325	Hoxa4	ENSMUST00000015484.3|Cybb|ENSMUSG00000015340.4|cytochrome b-245, beta polypeptide
mm10_v2_chr2_+_20737306_20737321	0.0910643	Hoxa4	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr12_-_57546121_57546141	0.088643	Hoxa4	ENSMUST00000044380.6|Foxa1|ENSMUSG00000035451.6|forkhead box A1
mm10_v2_chr14_-_30353468_30353535	0.0866156	Hoxa4	ENSMUST00000112249.1|Cacna1d|ENSMUSG00000015968.10|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm10_v2_chr5_+_64812336_64812350	0.0863025	Hoxa4	ENSMUST00000166409.1|Klf3|ENSMUSG00000029178.8|Kruppel-like factor 3 (basic)
mm10_v2_chr4_+_144893077_144893103	0.0862554	Hoxa4	ENSMUST00000154208.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr17_+_34592248_34592329	0.0839283	Hoxa4	ENSMUST00000038149.6|Pbx2|ENSMUSG00000034673.8|pre B cell leukemia homeobox 2
mm10_v2_chr1_-_74601345_74601402	0.0788705	Hoxa4	ENSMUST00000136078.1|Rnf25|ENSMUSG00000026171.6|ring finger protein 25 	ENSMUST00000132081.1|Rnf25|ENSMUSG00000026171.6|ring finger protein 25 	ENSMUST00000113721.1|Rnf25|ENSMUSG00000026171.6|ring finger protein 25 	ENSMUST00000027357.5|Rnf25|ENSMUSG00000026171.6|ring finger protein 25
mm10_v2_chrX_+_7697131_7697187	0.0779387	Hoxa4	ENSMUST00000049896.6|Gpkow|ENSMUSG00000031148.8|G patch domain and KOW motifs
mm10_v2_chr4_+_101550411_101550594	0.0776108	Hoxa4	ENSMUST00000094953.4|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6 	ENSMUST00000106933.1|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6
mm10_v2_chr8_+_106059562_106059623	0.0769467	Hoxa4	ENSMUST00000109308.1|Nfatc3|ENSMUSG00000031902.9|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3
mm10_v2_chr13_-_21832194_21832198	0.0762044	Hoxa4	ENSMUST00000102979.1|Hist1h4n|ENSMUSG00000069305.3|histone cluster 1, H4n
mm10_v2_chr11_-_30986326_30986372	0.0756182	Hoxa4	ENSMUST00000020553.4|Chac2|ENSMUSG00000020309.6|ChaC, cation transport regulator 2 	ENSMUST00000101394.4|Chac2|ENSMUSG00000020309.6|ChaC, cation transport regulator 2
mm10_v2_chr6_+_86527312_86527401	0.0747563	Hoxa4	ENSMUST00000181928.1|1600020E01Rik|ENSMUSG00000097048.1|RIKEN cDNA 1600020E01 gene
mm10_v2_chrX_-_59166080_59166164	0.0746722	Hoxa4	ENSMUST00000119306.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr2_+_109917639_109917656	0.0711162	Hoxa4	ENSMUST00000046548.7|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4 	ENSMUST00000111037.2|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4
mm10_v2_chr4_-_61674094_61674136	0.0710755	Hoxa4	ENSMUST00000098040.3|Mup18|ENSMUSG00000078674.2|major urinary protein 18
mm10_v2_chr16_-_64786321_64786321	0.0690929	Hoxa4	ENSMUST00000052588.4|Zfp654|ENSMUSG00000047141.4|zinc finger protein 654
mm10_v2_chr8_-_60954726_60954790	0.0690042	Hoxa4	ENSMUST00000110302.1|Clcn3|ENSMUSG00000004319.9|chloride channel 3
mm10_v2_chr12_+_65075582_65075617	0.0687626	Hoxa4	ENSMUST00000058889.4|Fancm|ENSMUSG00000055884.7|Fanconi anemia, complementation group M
mm10_v2_chr5_+_30814722_30814776	0.0684271	Hoxa4	ENSMUST00000114724.1|Mapre3|ENSMUSG00000029166.8|microtubule-associated protein, RP/EB family, member 3
mm10_v2_chr10_-_24101951_24101951	0.066569	Hoxa4	ENSMUST00000170267.1|Taar8c|ENSMUSG00000096204.1|trace amine-associated receptor 8C
mm10_v2_chr4_+_101507947_101508032	0.0658846	Hoxa4	ENSMUST00000149047.1|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6 	ENSMUST00000106929.3|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6
mm10_v2_chr19_+_8840519_8840549	0.0652558	Hoxa4	ENSMUST00000086058.6|Bscl2|ENSMUSG00000071657.6|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm10_v2_chr13_+_63015167_63015167	0.0648374	Hoxa4	ENSMUST00000021911.8|2010111I01Rik|ENSMUSG00000021458.10|RIKEN cDNA 2010111I01 gene
mm10_v2_chr10_-_70655934_70655972	0.0639279	Hoxa4	ENSMUST00000162144.1|Phyhipl|ENSMUSG00000037747.3|phytanoyl-CoA hydroxylase interacting protein-like 	ENSMUST00000162793.1|Phyhipl|ENSMUSG00000037747.3|phytanoyl-CoA hydroxylase interacting protein-like
mm10_v2_chr8_+_120488416_120488490	0.0636549	Hoxa4	ENSMUST00000034279.9|Gse1|ENSMUSG00000031822.12|genetic suppressor element 1
mm10_v2_chr3_+_5218589_5218614	0.061787	Hoxa4	ENSMUST00000177488.1|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr7_+_90348699_90348699	0.0615402	Hoxa4	ENSMUST00000107211.1|Sytl2|ENSMUSG00000030616.8|synaptotagmin-like 2 	ENSMUST00000107210.1|Sytl2|ENSMUSG00000030616.8|synaptotagmin-like 2
mm10_v2_chr15_-_37458523_37458581	0.060548	Hoxa4	ENSMUST00000116445.2|Ncald|ENSMUSG00000051359.8|neurocalcin delta
mm10_v2_chr15_-_37459327_37459380	0.0580042	Hoxa4	ENSMUST00000119730.1|Ncald|ENSMUSG00000051359.8|neurocalcin delta 	ENSMUST00000120746.1|Ncald|ENSMUSG00000051359.8|neurocalcin delta
mm10_v2_chr3_-_146682410_146682522	0.0566186	Hoxa4	ENSMUST00000124931.1|Samd13|ENSMUSG00000048652.6|sterile alpha motif domain containing 13 	ENSMUST00000147113.1|Samd13|ENSMUSG00000048652.6|sterile alpha motif domain containing 13
mm10_v2_chr2_-_120154600_120154611	0.0558906	Hoxa4	ENSMUST00000028755.7|Ehd4|ENSMUSG00000027293.7|EH-domain containing 4
mm10_v2_chr9_-_67832325_67832331	0.0557876	Hoxa4	ENSMUST00000054500.5|C2cd4a|ENSMUSG00000047990.5|C2 calcium-dependent domain containing 4A
mm10_v2_chr19_-_47692042_47692094	0.0547535	Hoxa4	ENSMUST00000026045.7|Col17a1|ENSMUSG00000025064.8|collagen, type XVII, alpha 1 	ENSMUST00000086923.5|Col17a1|ENSMUSG00000025064.8|collagen, type XVII, alpha 1
mm10_v2_chr6_-_23650206_23650271	0.0545795	Hoxa4	ENSMUST00000115354.1|Rnf133|ENSMUSG00000051956.4|ring finger protein 133
mm10_v2_chr11_+_57011798_57011827	0.0540816	Hoxa4	ENSMUST00000036315.9|Gria1|ENSMUSG00000020524.10|glutamate receptor, ionotropic, AMPA1 (alpha 1)
mm10_v2_chr15_-_99820072_99820154	0.053663	Hoxa4	ENSMUST00000109024.2|Lima1|ENSMUSG00000023022.7|LIM domain and actin binding 1
mm10_v2_chr7_+_79273201_79273270	0.0534766	Hoxa4	ENSMUST00000037315.6|Abhd2|ENSMUSG00000039202.6|abhydrolase domain containing 2
mm10_v2_chr2_+_83644435_83644490	0.0532729	Hoxa4	ENSMUST00000081591.6|Zc3h15|ENSMUSG00000027091.8|zinc finger CCCH-type containing 15
mm10_v2_chr3_+_86070915_86070915	0.0493001	Hoxa4	ENSMUST00000182666.1|Sh3d19|ENSMUSG00000028082.7|SH3 domain protein D19
mm10_v2_chr17_-_35697971_35698001	0.048951	Hoxa4	ENSMUST00000146472.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr4_-_118180043_118180054	0.0488821	Hoxa4	ENSMUST00000106406.2|Kdm4a|ENSMUSG00000033326.9|lysine (K)-specific demethylase 4A
mm10_v2_chr1_-_138848576_138848603	0.048164	Hoxa4	ENSMUST00000112030.2|Lhx9|ENSMUSG00000019230.8|LIM homeobox protein 9
mm10_v2_chr3_+_95164306_95164374	0.0472053	Hoxa4	ENSMUST00000107217.1|Sema6c|ENSMUSG00000038777.13|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C 	ENSMUST00000168321.1|Sema6c|ENSMUSG00000038777.13|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
mm10_v2_chr11_+_96302595_96302595	0.0470638	Hoxa4	ENSMUST00000049272.3|Hoxb5|ENSMUSG00000038700.3|homeobox B5
mm10_v2_chr15_+_18818895_18818947	0.0464736	Hoxa4	ENSMUST00000166873.2|Cdh10|ENSMUSG00000022321.9|cadherin 10
mm10_v2_chr2_-_13271268_13271348	0.0464254	Hoxa4	ENSMUST00000137670.1|Rsu1|ENSMUSG00000026727.4|Ras suppressor protein 1 	ENSMUST00000114791.2|Rsu1|ENSMUSG00000026727.4|Ras suppressor protein 1
mm10_v2_chr8_+_4238815_4238886	0.0462558	Hoxa4	ENSMUST00000003027.7|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7 	ENSMUST00000110999.1|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7
mm10_v2_chr6_+_29468068_29468113	0.0458967	Hoxa4	ENSMUST00000143101.1|Atp6v1f|ENSMUSG00000004285.6|ATPase, H+ transporting, lysosomal V1 subunit F
mm10_v2_chr4_+_130107556_130107606	0.0446792	Hoxa4	ENSMUST00000030563.5|Pef1|ENSMUSG00000028779.10|penta-EF hand domain containing 1
mm10_v2_chr2_-_13271419_13271437	0.0438103	Hoxa4	ENSMUST00000028059.2|Rsu1|ENSMUSG00000026727.4|Ras suppressor protein 1
mm10_v2_chr13_-_107890059_107890073	0.0435637	Hoxa4	ENSMUST00000105097.2|Zswim6|ENSMUSG00000032846.9|zinc finger SWIM-type containing 6
mm10_v2_chr12_-_27160498_27160633	0.0411867	Hoxa4	ENSMUST00000182592.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866
mm10_v2_chr5_-_137314175_137314241	0.0384018	Hoxa4	ENSMUST00000024119.9|Trip6|ENSMUSG00000023348.10|thyroid hormone receptor interactor 6
mm10_v2_chr18_-_61014199_61014261	0.0370984	Hoxa4	ENSMUST00000025520.8|Slc6a7|ENSMUSG00000052026.7|solute carrier family 6 (neurotransmitter transporter, L-proline), member 7
mm10_v2_chr9_-_29412204_29412277	0.0369864	Hoxa4	ENSMUST00000115237.1|Ntm|ENSMUSG00000059974.4|neurotrimin
mm10_v2_chr10_+_127421208_127421235	0.0353314	Hoxa4	ENSMUST00000168780.1|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chr13_+_94875600_94875611	0.0338915	Hoxa4	ENSMUST00000022195.10|Otp|ENSMUSG00000021685.10|orthopedia homolog (Drosophila)
mm10_v2_chr10_-_119240006_119240092	0.0325016	Hoxa4	ENSMUST00000020315.6|Cand1|ENSMUSG00000020114.6|cullin associated and neddylation disassociated 1
mm10_v2_chr18_+_37300799_37300835	0.0319276	Hoxa4	ENSMUST00000051754.1|Pcdhb3|ENSMUSG00000045498.1|protocadherin beta 3
mm10_v2_chr4_+_119814495_119814526	0.0315312	Hoxa4	ENSMUST00000106307.2|Hivep3|ENSMUSG00000028634.10|human immunodeficiency virus type I enhancer binding protein 3
mm10_v2_chr5_-_122002340_122002368	0.0312341	Hoxa4	ENSMUST00000134326.1|Cux2|ENSMUSG00000042589.12|cut-like homeobox 2
mm10_v2_chr9_-_42399915_42399929	0.0309467	Hoxa4	ENSMUST00000042190.7|Tecta|ENSMUSG00000037705.7|tectorin alpha
mm10_v2_chr9_+_72274966_72275013	0.0308261	Hoxa4	ENSMUST00000183410.1|Zfp280d|ENSMUSG00000038535.11|zinc finger protein 280D
mm10_v2_chr1_+_93478964_93479108	0.0301576	Hoxa4	ENSMUST00000027495.8|Sept2|ENSMUSG00000026276.11|septin 2 	ENSMUST00000136182.1|Sept2|ENSMUSG00000026276.11|septin 2 	ENSMUST00000131175.2|Sept2|ENSMUSG00000026276.11|septin 2 	ENSMUST00000179353.1|Sept2|ENSMUSG00000026276.11|septin 2 	ENSMUST00000172165.1|Sept2|ENSMUSG00000026276.11|septin 2 	ENSMUST00000153826.1|Sept2|ENSMUSG00000026276.11|septin 2 	ENSMUST00000129211.1|Sept2|ENSMUSG00000026276.11|septin 2 	ENSMUST00000168776.1|Sept2|ENSMUSG00000026276.11|septin 2 	ENSMUST00000112912.1|Sept2|ENSMUSG00000026276.11|septin 2
mm10_v2_chr2_+_31759932_31759989	0.0300816	Hoxa4	ENSMUST00000028190.6|Abl1|ENSMUSG00000026842.10|c-abl oncogene 1, non-receptor tyrosine kinase
mm10_v2_chr7_-_116031047_116031122	0.0297152	Hoxa4	ENSMUST00000106612.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr8_-_45294854_45294863	0.0273043	Hoxa4	ENSMUST00000116473.2|Klkb1|ENSMUSG00000031640.9|kallikrein B, plasma 1
mm10_v2_chr3_+_96645579_96645608	0.0271768	Hoxa4	ENSMUST00000119365.1|Itga10|ENSMUSG00000090210.1|integrin, alpha 10 	ENSMUST00000029744.5|Itga10|ENSMUSG00000090210.1|integrin, alpha 10
mm10_v2_chr5_-_137530990_137531049	0.0263783	Hoxa4	ENSMUST00000132525.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr17_-_38082999_38082999	0.0226854	Hoxa4	ENSMUST00000059560.4|Olfr131|ENSMUSG00000043312.5|olfactory receptor 131
mm10_v2_chr10_+_69534208_69534222	0.0216525	Hoxa4	ENSMUST00000182439.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092434.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092432.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092431.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000054167.8|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000047061.6|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr12_-_27160311_27160476	0.0171846	Hoxa4	ENSMUST00000182473.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866 	ENSMUST00000177636.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866 	ENSMUST00000183238.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866
mm10_v2_chr18_+_86711059_86711110	0.0154992	Hoxa4	ENSMUST00000068423.3|Cbln2|ENSMUSG00000024647.8|cerebellin 2 precursor protein
mm10_v2_chr6_-_52191695_52191753	0.0127181	Hoxa4	ENSMUST00000101395.2|Hoxa4|ENSMUSG00000000942.10|homeobox A4
mm10_v2_chr2_-_116065798_116065853	0.012509	Hoxa4	ENSMUST00000110907.1|Meis2|ENSMUSG00000027210.14|Meis homeobox 2 	ENSMUST00000110908.2|Meis2|ENSMUSG00000027210.14|Meis homeobox 2
mm10_v2_chr10_+_102159000_102159079	0.0113343	Hoxa4	ENSMUST00000020039.6|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
mm10_v2_chr11_+_103966716_103966871	0.0104278	Hoxa4	ENSMUST00000057921.3|Arf2|ENSMUSG00000062421.7|ADP-ribosylation factor 2 	ENSMUST00000063347.5|Arf2|ENSMUSG00000062421.7|ADP-ribosylation factor 2
mm10_v2_chr3_+_94837702_94837723	0.00771428	Hoxa4	ENSMUST00000107266.1|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain 	ENSMUST00000042402.5|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain 	ENSMUST00000107269.1|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain
mm10_v2_chr8_+_47713266_47713266	0.00753642	Hoxa4	ENSMUST00000180928.1|E030037K01Rik|ENSMUSG00000097706.1|RIKEN cDNA E030037K01 gene
mm10_v2_chr17_-_43667015_43667163	0.00620453	Hoxa4	ENSMUST00000024705.4|Slc25a27|ENSMUSG00000023912.9|solute carrier family 25, member 27
mm10_v2_chr1_+_143739551_143739566	0.00443012	Hoxa4	ENSMUST00000050491.9|Glrx2|ENSMUSG00000018196.12|glutaredoxin 2 (thioltransferase)
mm10_v2_chr17_+_34238914_34238964	0.00428033	Hoxa4	ENSMUST00000167280.1|H2-Ob|ENSMUSG00000041538.9|histocompatibility 2, O region beta locus
mm10_v2_chr11_+_67200052_67200111	0.00420432	Hoxa4	ENSMUST00000124516.1|Myh1|ENSMUSG00000056328.8|myosin, heavy polypeptide 1, skeletal muscle, adult 	ENSMUST00000018637.8|Myh1|ENSMUSG00000056328.8|myosin, heavy polypeptide 1, skeletal muscle, adult
mm10_v2_chr10_+_84756055_84756084	0.00238977	Hoxa4	ENSMUST00000060397.6|Rfx4|ENSMUSG00000020037.9|regulatory factor X, 4 (influences HLA class II expression)
mm10_v2_chr10_+_87859481_87859492	0.000869183	Hoxa4	ENSMUST00000121952.1|Igf1|ENSMUSG00000020053.12|insulin-like growth factor 1
mm10_v2_chr8_+_4238733_4238767	0.000823594	Hoxa4	ENSMUST00000110998.2|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7 	ENSMUST00000062686.4|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7
mm10_v2_chrX_-_106603677_106603702	0.000112084	Hoxa4	ENSMUST00000113480.1|Cysltr1|ENSMUSG00000052821.3|cysteinyl leukotriene receptor 1
