mm10_v2_chr2_-_80447625_80447625	1.32946	Hoxa9_Hoxb9	ENSMUST00000028389.3|Frzb|ENSMUSG00000027004.3|frizzled-related protein
mm10_v2_chr7_-_101870778_101870788	1.28916	Hoxa9_Hoxb9	ENSMUST00000001882.4|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult) 	ENSMUST00000126204.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult) 	ENSMUST00000155311.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult) 	ENSMUST00000106983.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult) 	ENSMUST00000123630.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult)
mm10_v2_chr7_-_101870683_101870707	1.24913	Hoxa9_Hoxb9	ENSMUST00000106986.2|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult) 	ENSMUST00000106985.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult)
mm10_v2_chr15_+_25773985_25774042	1.14202	Hoxa9_Hoxb9	ENSMUST00000125667.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr5_-_139814231_139814283	1.13175	Hoxa9_Hoxb9	ENSMUST00000044002.4|Tmem184a|ENSMUSG00000036687.7|transmembrane protein 184a
mm10_v2_chr4_-_137118135_137118165	1.07732	Hoxa9_Hoxb9	ENSMUST00000154285.1|Gm13001|ENSMUSG00000087417.1|predicted gene 13001
mm10_v2_chr17_-_91092715_91092822	1.01145	Hoxa9_Hoxb9	ENSMUST00000160800.2|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000159778.1|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000160844.3|Nrxn1|ENSMUSG00000024109.12|neurexin I
mm10_v2_chr7_-_101870711_101870756	0.960233	Hoxa9_Hoxb9	ENSMUST00000151706.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult)
mm10_v2_chr4_-_49549523_49549546	0.959881	Hoxa9_Hoxb9	ENSMUST00000029987.9|Aldob|ENSMUSG00000028307.9|aldolase B, fructose-bisphosphate
mm10_v2_chr7_-_101864093_101864156	0.949521	Hoxa9_Hoxb9	ENSMUST00000106981.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult)
mm10_v2_chr2_+_58754910_58754942	0.807555	Hoxa9_Hoxb9	ENSMUST00000059102.6|Upp2|ENSMUSG00000026839.10|uridine phosphorylase 2
mm10_v2_chr3_-_106406090_106406182	0.743476	Hoxa9_Hoxb9	ENSMUST00000029510.7|BC051070|ENSMUSG00000027902.7|cDNA sequence BC051070
mm10_v2_chr2_+_125136692_125136769	0.731308	Hoxa9_Hoxb9	ENSMUST00000099452.2|Ctxn2|ENSMUSG00000074872.2|cortexin 2
mm10_v2_chr11_-_109298066_109298079	0.699094	Hoxa9_Hoxb9	ENSMUST00000106706.1|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr6_+_30610984_30611026	0.677597	Hoxa9_Hoxb9	ENSMUST00000062758.4|Cpa5|ENSMUSG00000029788.7|carboxypeptidase A5
mm10_v2_chr1_+_194619815_194619833	0.657033	Hoxa9_Hoxb9	ENSMUST00000027952.5|Plxna2|ENSMUSG00000026640.6|plexin A2
mm10_v2_chr2_+_58755177_58755195	0.654455	Hoxa9_Hoxb9	ENSMUST00000102755.3|Upp2|ENSMUSG00000026839.10|uridine phosphorylase 2
mm10_v2_chr6_+_30611029_30611051	0.623292	Hoxa9_Hoxb9	ENSMUST00000115138.1|Cpa5|ENSMUSG00000029788.7|carboxypeptidase A5
mm10_v2_chr3_+_138065052_138065078	0.618222	Hoxa9_Hoxb9	ENSMUST00000163080.2|1110002E22Rik|ENSMUSG00000090066.2|RIKEN cDNA 1110002E22 gene
mm10_v2_chr1_+_88211956_88211985	0.567427	Hoxa9_Hoxb9	ENSMUST00000073049.6|Ugt1a1|ENSMUSG00000089960.1|UDP glucuronosyltransferase 1 family, polypeptide A1
mm10_v2_chr8_+_45069137_45069137	0.551532	Hoxa9_Hoxb9	ENSMUST00000067984.7|Mtnr1a|ENSMUSG00000054764.8|melatonin receptor 1A
mm10_v2_chr18_+_37655891_37655915	0.54556	Hoxa9_Hoxb9	ENSMUST00000097608.2|3222401L13Rik|ENSMUSG00000073590.2|RIKEN cDNA 3222401L13 gene
mm10_v2_chr16_-_52454074_52454074	0.517898	Hoxa9_Hoxb9	ENSMUST00000023312.7|Alcam|ENSMUSG00000022636.7|activated leukocyte cell adhesion molecule
mm10_v2_chr9_+_43310763_43310806	0.515357	Hoxa9_Hoxb9	ENSMUST00000034511.5|Trim29|ENSMUSG00000032013.5|tripartite motif-containing 29
mm10_v2_chr11_-_109298090_109298118	0.509782	Hoxa9_Hoxb9	ENSMUST00000106704.2|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr12_+_112620030_112620056	0.48241	Hoxa9_Hoxb9	ENSMUST00000180015.1|Adssl1|ENSMUSG00000011148.7|adenylosuccinate synthetase like 1 	ENSMUST00000021726.6|Adssl1|ENSMUSG00000011148.7|adenylosuccinate synthetase like 1
mm10_v2_chrX_+_139563316_139563339	0.475984	Hoxa9_Hoxb9	ENSMUST00000113027.1|Rnf128|ENSMUSG00000031438.5|ring finger protein 128
mm10_v2_chr3_+_138313279_138313293	0.456466	Hoxa9_Hoxb9	ENSMUST00000013455.6|Adh6a|ENSMUSG00000053054.7|alcohol dehydrogenase 6A (class V) 	ENSMUST00000106247.1|Adh6a|ENSMUSG00000053054.7|alcohol dehydrogenase 6A (class V)
mm10_v2_chr2_+_28205648_28205672	0.445594	Hoxa9_Hoxb9	ENSMUST00000102879.3|Olfm1|ENSMUSG00000026833.12|olfactomedin 1 	ENSMUST00000028177.4|Olfm1|ENSMUSG00000026833.12|olfactomedin 1
mm10_v2_chr17_-_15826521_15826590	0.437512	Hoxa9_Hoxb9	ENSMUST00000170578.1|Rgmb|ENSMUSG00000048027.7|RGM domain family, member B
mm10_v2_chr15_-_79062866_79062941	0.430117	Hoxa9_Hoxb9	ENSMUST00000151889.1|Ankrd54|ENSMUSG00000033055.4|ankyrin repeat domain 54 	ENSMUST00000040676.4|Ankrd54|ENSMUSG00000033055.4|ankyrin repeat domain 54
mm10_v2_chr3_-_113574242_113574272	0.425387	Hoxa9_Hoxb9	ENSMUST00000142505.2|Amy1|ENSMUSG00000074264.6|amylase 1, salivary
mm10_v2_chrX_+_159840463_159840481	0.418554	Hoxa9_Hoxb9	ENSMUST00000112451.1|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1 	ENSMUST00000112453.2|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr1_+_24005505_24005505	0.415683	Hoxa9_Hoxb9	ENSMUST00000181961.1|Gm26524|ENSMUSG00000096985.1|predicted gene, 26524
mm10_v2_chr7_+_43690418_43690418	0.411201	Hoxa9_Hoxb9	ENSMUST00000056329.6|Klk14|ENSMUSG00000044737.6|kallikrein related-peptidase 14
mm10_v2_chr15_-_101573883_101573913	0.395814	Hoxa9_Hoxb9	ENSMUST00000042957.5|Krt75|ENSMUSG00000022986.5|keratin 75
mm10_v2_chr7_-_142661858_142661880	0.395704	Hoxa9_Hoxb9	ENSMUST00000145896.2|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr11_-_99244058_99244136	0.392013	Hoxa9_Hoxb9	ENSMUST00000103132.3|Krt222|ENSMUSG00000035849.8|keratin 222 	ENSMUST00000038214.6|Krt222|ENSMUSG00000035849.8|keratin 222
mm10_v2_chr19_-_57197435_57197460	0.383046	Hoxa9_Hoxb9	ENSMUST00000111550.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr3_+_118562129_118562156	0.373364	Hoxa9_Hoxb9	ENSMUST00000039177.7|Dpyd|ENSMUSG00000033308.10|dihydropyrimidine dehydrogenase
mm10_v2_chr19_-_57197377_57197417	0.367092	Hoxa9_Hoxb9	ENSMUST00000111546.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr1_+_59256906_59256907	0.364503	Hoxa9_Hoxb9	ENSMUST00000160662.1|Cdk15|ENSMUSG00000026023.10|cyclin-dependent kinase 15 	ENSMUST00000114248.2|Cdk15|ENSMUSG00000026023.10|cyclin-dependent kinase 15
mm10_v2_chr14_-_47189406_47189419	0.342904	Hoxa9_Hoxb9	ENSMUST00000089959.6|Gch1|ENSMUSG00000037580.9|GTP cyclohydrolase 1
mm10_v2_chr15_+_85510812_85510812	0.338332	Hoxa9_Hoxb9	ENSMUST00000079690.2|Gm4825|ENSMUSG00000063548.2|predicted pseudogene 4825
mm10_v2_chr19_-_57197556_57197631	0.326955	Hoxa9_Hoxb9	ENSMUST00000099294.2|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr2_+_22622183_22622205	0.317797	Hoxa9_Hoxb9	ENSMUST00000028123.3|Gad2|ENSMUSG00000026787.3|glutamic acid decarboxylase 2
mm10_v2_chr13_-_23914998_23915011	0.313173	Hoxa9_Hoxb9	ENSMUST00000021769.8|Slc17a4|ENSMUSG00000021336.10|solute carrier family 17 (sodium phosphate), member 4 	ENSMUST00000110407.2|Slc17a4|ENSMUSG00000021336.10|solute carrier family 17 (sodium phosphate), member 4
mm10_v2_chr4_+_145585166_145585211	0.313042	Hoxa9_Hoxb9	ENSMUST00000105739.1|Gm13212|ENSMUSG00000078502.4|predicted gene 13212 	ENSMUST00000119718.1|Gm13212|ENSMUSG00000078502.4|predicted gene 13212
mm10_v2_chr1_+_107511489_107511502	0.306733	Hoxa9_Hoxb9	ENSMUST00000064916.2|Serpinb2|ENSMUSG00000062345.4|serine (or cysteine) peptidase inhibitor, clade B, member 2
mm10_v2_chr11_-_78386558_78386598	0.306643	Hoxa9_Hoxb9	ENSMUST00000108294.1|Foxn1|ENSMUSG00000002057.4|forkhead box N1
mm10_v2_chr6_+_115422040_115422067	0.304629	Hoxa9_Hoxb9	ENSMUST00000000450.3|Pparg|ENSMUSG00000000440.6|peroxisome proliferator activated receptor gamma
mm10_v2_chr1_+_109993982_109993982	0.30378	Hoxa9_Hoxb9	ENSMUST00000027542.6|Cdh7|ENSMUSG00000026312.11|cadherin 7, type 2
mm10_v2_chr13_-_91388079_91388090	0.282324	Hoxa9_Hoxb9	ENSMUST00000181054.1|A830009L08Rik|ENSMUSG00000097182.1|RIKEN cDNA A830009L08 gene
mm10_v2_chr7_-_45062393_45062436	0.277164	Hoxa9_Hoxb9	ENSMUST00000129101.1|Prrg2|ENSMUSG00000007837.4|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
mm10_v2_chr2_-_64393853_64393862	0.276799	Hoxa9_Hoxb9	ENSMUST00000142353.1|Gm13575|ENSMUSG00000087702.1|predicted gene 13575
mm10_v2_chr1_-_153844130_153844158	0.275654	Hoxa9_Hoxb9	ENSMUST00000124558.3|Rgsl1|ENSMUSG00000042641.12|regulator of G-protein signaling like 1
mm10_v2_chr2_-_181599128_181599235	0.271884	Hoxa9_Hoxb9	ENSMUST00000060173.8|Samd10|ENSMUSG00000038605.11|sterile alpha motif domain containing 10
mm10_v2_chr7_+_28277706_28277770	0.269644	Hoxa9_Hoxb9	ENSMUST00000094651.2|Eid2b|ENSMUSG00000070705.2|EP300 interacting inhibitor of differentiation 2B
mm10_v2_chr1_+_107511416_107511431	0.257663	Hoxa9_Hoxb9	ENSMUST00000009356.4|Serpinb2|ENSMUSG00000062345.4|serine (or cysteine) peptidase inhibitor, clade B, member 2
mm10_v2_chr9_+_45055166_45055195	0.252519	Hoxa9_Hoxb9	ENSMUST00000114664.1|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3 	ENSMUST00000093856.3|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3
mm10_v2_chr2_+_152105722_152105739	0.242495	Hoxa9_Hoxb9	ENSMUST00000099225.2|Srxn1|ENSMUSG00000032802.7|sulfiredoxin 1 homolog (S. cerevisiae)
mm10_v2_chr7_+_56050135_56050217	0.238998	Hoxa9_Hoxb9	ENSMUST00000076226.6|Herc2|ENSMUSG00000030451.9|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2
mm10_v2_chr16_-_17531019_17531136	0.237542	Hoxa9_Hoxb9	ENSMUST00000142666.1|Thap7|ENSMUSG00000022760.9|THAP domain containing 7 	ENSMUST00000100125.3|Thap7|ENSMUSG00000022760.9|THAP domain containing 7
mm10_v2_chr3_+_98280427_98280444	0.235672	Hoxa9_Hoxb9	ENSMUST00000090746.2|Hmgcs2|ENSMUSG00000027875.6|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 	ENSMUST00000120541.1|Hmgcs2|ENSMUSG00000027875.6|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
mm10_v2_chr19_-_7341792_7341829	0.234734	Hoxa9_Hoxb9	ENSMUST00000164205.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000165286.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000168324.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000032557.8|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2
mm10_v2_chr15_+_81936911_81936982	0.231447	Hoxa9_Hoxb9	ENSMUST00000135663.1|Csdc2|ENSMUSG00000042109.7|cold shock domain containing C2, RNA binding
mm10_v2_chr5_-_73191848_73191922	0.230819	Hoxa9_Hoxb9	ENSMUST00000176910.1|Fryl|ENSMUSG00000070733.7|furry homolog-like (Drosophila)
mm10_v2_chr4_+_115737738_115737752	0.229129	Hoxa9_Hoxb9	ENSMUST00000106525.2|Efcab14|ENSMUSG00000034210.7|EF-hand calcium binding domain 14
mm10_v2_chr7_+_28693997_28694019	0.223818	Hoxa9_Hoxb9	ENSMUST00000108280.1|Fbxo27|ENSMUSG00000037463.8|F-box protein 27
mm10_v2_chr14_+_20674311_20674371	0.218187	Hoxa9_Hoxb9	ENSMUST00000048657.8|Sec24c|ENSMUSG00000039367.9|Sec24 related gene family, member C (S. cerevisiae)
mm10_v2_chr10_+_17796256_17796339	0.213056	Hoxa9_Hoxb9	ENSMUST00000037964.6|Txlnb|ENSMUSG00000039891.6|taxilin beta
mm10_v2_chr9_+_75311395_75311395	0.211953	Hoxa9_Hoxb9	ENSMUST00000076889.6|Gnb5|ENSMUSG00000032192.8|guanine nucleotide binding protein (G protein), beta 5
mm10_v2_chr15_-_41869703_41869727	0.200946	Hoxa9_Hoxb9	ENSMUST00000054742.5|Abra|ENSMUSG00000042895.5|actin-binding Rho activating protein
mm10_v2_chr9_-_101198999_101199080	0.196159	Hoxa9_Hoxb9	ENSMUST00000066773.7|Ppp2r3a|ENSMUSG00000043154.9|protein phosphatase 2, regulatory subunit B'', alpha
mm10_v2_chr8_-_79248537_79248583	0.184569	Hoxa9_Hoxb9	ENSMUST00000034109.4|1700011L22Rik|ENSMUSG00000031682.4|RIKEN cDNA 1700011L22 gene
mm10_v2_chr4_+_147540218_147540218	0.182741	Hoxa9_Hoxb9	ENSMUST00000104964.2|Gm16503|ENSMUSG00000078160.2|predicted gene 16503
mm10_v2_chr4_+_115737754_115737810	0.182376	Hoxa9_Hoxb9	ENSMUST00000106522.2|Efcab14|ENSMUSG00000034210.7|EF-hand calcium binding domain 14
mm10_v2_chr19_+_44203265_44203288	0.181507	Hoxa9_Hoxb9	ENSMUST00000026220.5|Scd3|ENSMUSG00000025202.7|stearoyl-coenzyme A desaturase 3
mm10_v2_chr13_-_59706197_59706197	0.177089	Hoxa9_Hoxb9	ENSMUST00000066510.6|Spata31d1a|ENSMUSG00000050876.8|spermatogenesis associated 31 subfamily D, member 1A
mm10_v2_chr9_+_122351555_122351608	0.171404	Hoxa9_Hoxb9	ENSMUST00000156520.1|Abhd5|ENSMUSG00000032540.9|abhydrolase domain containing 5
mm10_v2_chr7_-_127449109_127449166	0.165392	Hoxa9_Hoxb9	ENSMUST00000053392.4|Zfp689|ENSMUSG00000048921.5|zinc finger protein 689
mm10_v2_chr1_-_46030437_46030469	0.161377	Hoxa9_Hoxb9	ENSMUST00000171707.1|Gm4776|ENSMUSG00000044457.2|predicted gene 4776 	ENSMUST00000167676.1|Gm4776|ENSMUSG00000044457.2|predicted gene 4776 	ENSMUST00000051224.1|Gm4776|ENSMUSG00000044457.2|predicted gene 4776
mm10_v2_chr3_+_90062781_90062836	0.157288	Hoxa9_Hoxb9	ENSMUST00000029551.2|1700094D03Rik|ENSMUSG00000078667.2|RIKEN cDNA 1700094D03 gene
mm10_v2_chr1_-_75232093_75232093	0.154705	Hoxa9_Hoxb9	ENSMUST00000180101.1|A630095N17Rik|ENSMUSG00000096094.1|RIKEN cDNA A630095N17 gene
mm10_v2_chr11_+_67078293_67078307	0.152959	Hoxa9_Hoxb9	ENSMUST00000108689.1|Myh3|ENSMUSG00000020908.8|myosin, heavy polypeptide 3, skeletal muscle, embryonic 	ENSMUST00000165221.1|Myh3|ENSMUSG00000020908.8|myosin, heavy polypeptide 3, skeletal muscle, embryonic 	ENSMUST00000007301.7|Myh3|ENSMUSG00000020908.8|myosin, heavy polypeptide 3, skeletal muscle, embryonic
mm10_v2_chr14_-_33978751_33978791	0.142694	Hoxa9_Hoxb9	ENSMUST00000166737.1|Zfp488|ENSMUSG00000044519.8|zinc finger protein 488
mm10_v2_chr19_-_57197496_57197536	0.142239	Hoxa9_Hoxb9	ENSMUST00000111544.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr8_+_9977707_9977725	0.133978	Hoxa9_Hoxb9	ENSMUST00000139793.1|Abhd13|ENSMUSG00000040396.6|abhydrolase domain containing 13 	ENSMUST00000048216.5|Abhd13|ENSMUSG00000040396.6|abhydrolase domain containing 13
mm10_v2_chr10_+_23960494_23960494	0.133728	Hoxa9_Hoxb9	ENSMUST00000092660.1|Taar4|ENSMUSG00000069707.1|trace amine-associated receptor 4
mm10_v2_chr7_-_30232186_30232272	0.130689	Hoxa9_Hoxb9	ENSMUST00000006254.5|Tbcb|ENSMUSG00000006095.6|tubulin folding cofactor B
mm10_v2_chr4_+_145670685_145670685	0.130204	Hoxa9_Hoxb9	ENSMUST00000105738.2|Gm13242|ENSMUSG00000058186.7|predicted gene 13242
mm10_v2_chr18_+_12599894_12599926	0.125213	Hoxa9_Hoxb9	ENSMUST00000169401.1|Ttc39c|ENSMUSG00000024424.8|tetratricopeptide repeat domain 39C
mm10_v2_chr17_-_6621267_6621267	0.123543	Hoxa9_Hoxb9	ENSMUST00000115772.3|Tmem181c-ps|ENSMUSG00000093880.1|transmembrane protein 181C, pseudogene
mm10_v2_chr3_+_83026147_83026162	0.123071	Hoxa9_Hoxb9	ENSMUST00000166581.1|Fga|ENSMUSG00000028001.10|fibrinogen alpha chain 	ENSMUST00000029630.9|Fga|ENSMUSG00000028001.10|fibrinogen alpha chain
mm10_v2_chr19_-_50678642_50678702	0.122401	Hoxa9_Hoxb9	ENSMUST00000072685.6|Sorcs1|ENSMUSG00000043531.9|VPS10 domain receptor protein SORCS 1 	ENSMUST00000164039.2|Sorcs1|ENSMUSG00000043531.9|VPS10 domain receptor protein SORCS 1
mm10_v2_chr8_-_33843562_33843671	0.12137	Hoxa9_Hoxb9	ENSMUST00000183062.1|Rbpms|ENSMUSG00000031586.10|RNA binding protein gene with multiple splicing
mm10_v2_chr7_-_127448993_127449077	0.112829	Hoxa9_Hoxb9	ENSMUST00000106299.1|Zfp689|ENSMUSG00000048921.5|zinc finger protein 689
mm10_v2_chr3_+_108591279_108591414	0.109886	Hoxa9_Hoxb9	ENSMUST00000051145.8|Wdr47|ENSMUSG00000040389.9|WD repeat domain 47 	ENSMUST00000139626.1|Wdr47|ENSMUSG00000040389.9|WD repeat domain 47
mm10_v2_chr18_+_13006990_13006990	0.1097	Hoxa9_Hoxb9	ENSMUST00000041676.2|Hrh4|ENSMUSG00000037346.4|histamine receptor H4
mm10_v2_chr5_-_26089291_26089291	0.108187	Hoxa9_Hoxb9	ENSMUST00000094946.4|Gm10471|ENSMUSG00000073116.4|predicted gene 10471
mm10_v2_chr11_-_83530505_83530533	0.108012	Hoxa9_Hoxb9	ENSMUST00000035938.2|Ccl5|ENSMUSG00000035042.2|chemokine (C-C motif) ligand 5
mm10_v2_chr7_-_130772652_130772652	0.107648	Hoxa9_Hoxb9	ENSMUST00000057134.4|Etos1|ENSMUSG00000050189.4|ectopic ossification 1
mm10_v2_chr8_+_112570043_112570060	0.107297	Hoxa9_Hoxb9	ENSMUST00000034225.6|Cntnap4|ENSMUSG00000031772.11|contactin associated protein-like 4 	ENSMUST00000118171.1|Cntnap4|ENSMUSG00000031772.11|contactin associated protein-like 4
mm10_v2_chr5_-_107869153_107869175	0.103767	Hoxa9_Hoxb9	ENSMUST00000128723.1|Evi5|ENSMUSG00000011831.10|ecotropic viral integration site 5 	ENSMUST00000124034.1|Evi5|ENSMUSG00000011831.10|ecotropic viral integration site 5
mm10_v2_chr7_+_44896077_44896106	0.101557	Hoxa9_Hoxb9	ENSMUST00000071207.7|Fuz|ENSMUSG00000011658.8|fuzzy homolog (Drosophila) 	ENSMUST00000166849.1|Fuz|ENSMUSG00000011658.8|fuzzy homolog (Drosophila) 	ENSMUST00000168712.1|Fuz|ENSMUSG00000011658.8|fuzzy homolog (Drosophila) 	ENSMUST00000168389.1|Fuz|ENSMUSG00000011658.8|fuzzy homolog (Drosophila)
mm10_v2_chr9_-_107770945_107771007	0.0961629	Hoxa9_Hoxb9	ENSMUST00000183248.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000182022.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000035199.6|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000182659.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5
mm10_v2_chr18_-_15063560_15063617	0.0939341	Hoxa9_Hoxb9	ENSMUST00000168989.1|Kctd1|ENSMUSG00000036225.8|potassium channel tetramerisation domain containing 1
mm10_v2_chr18_+_37400845_37400886	0.0934738	Hoxa9_Hoxb9	ENSMUST00000057228.1|Pcdhb9|ENSMUSG00000051242.1|protocadherin beta 9
mm10_v2_chr2_-_58052832_58052870	0.0930706	Hoxa9_Hoxb9	ENSMUST00000090940.5|Ermn|ENSMUSG00000026830.9|ermin, ERM-like protein
mm10_v2_chr14_-_57058030_57058030	0.0902681	Hoxa9_Hoxb9	ENSMUST00000061614.6|Gja3|ENSMUSG00000048582.6|gap junction protein, alpha 3
mm10_v2_chr4_-_49597860_49597892	0.0902454	Hoxa9_Hoxb9	ENSMUST00000042750.2|Tmem246|ENSMUSG00000039611.2|transmembrane protein 246
mm10_v2_chr7_-_45870928_45870986	0.087163	Hoxa9_Hoxb9	ENSMUST00000146672.1|Grin2d|ENSMUSG00000002771.10|glutamate receptor, ionotropic, NMDA2D (epsilon 4)
mm10_v2_chr1_-_24005608_24005656	0.0860888	Hoxa9_Hoxb9	ENSMUST00000027338.3|1110058L19Rik|ENSMUSG00000026154.4|RIKEN cDNA 1110058L19 gene
mm10_v2_chr10_-_116896879_116896956	0.0858955	Hoxa9_Hoxb9	ENSMUST00000048229.7|Myrfl|ENSMUSG00000034057.7|myelin regulatory factor-like
mm10_v2_chr17_-_29007925_29007962	0.0846979	Hoxa9_Hoxb9	ENSMUST00000009138.5|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38 	ENSMUST00000119274.1|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38
mm10_v2_chr14_-_54282925_54282925	0.084632	Hoxa9_Hoxb9	ENSMUST00000059996.4|Olfr49|ENSMUSG00000048153.4|olfactory receptor 49
mm10_v2_chr3_-_96197580_96197634	0.0832906	Hoxa9_Hoxb9	ENSMUST00000016087.3|Bola1|ENSMUSG00000015943.5|bolA-like 1 (E. coli)
mm10_v2_chr7_+_110768169_110768206	0.0823864	Hoxa9_Hoxb9	ENSMUST00000170374.1|Ampd3|ENSMUSG00000005686.10|adenosine monophosphate deaminase 3
mm10_v2_chr18_-_56975333_56975376	0.0815789	Hoxa9_Hoxb9	ENSMUST00000139243.2|C330018D20Rik|ENSMUSG00000024592.9|RIKEN cDNA C330018D20 gene 	ENSMUST00000025488.8|C330018D20Rik|ENSMUSG00000024592.9|RIKEN cDNA C330018D20 gene
mm10_v2_chr11_-_79504078_79504089	0.0794975	Hoxa9_Hoxb9	ENSMUST00000164465.2|Omg|ENSMUSG00000049612.10|oligodendrocyte myelin glycoprotein
mm10_v2_chr8_+_120488416_120488490	0.0792517	Hoxa9_Hoxb9	ENSMUST00000034279.9|Gse1|ENSMUSG00000031822.12|genetic suppressor element 1
mm10_v2_chr1_-_66945361_66945416	0.0792305	Hoxa9_Hoxb9	ENSMUST00000160100.1|Myl1|ENSMUSG00000061816.9|myosin, light polypeptide 1
mm10_v2_chr2_+_180967291_180967303	0.0724656	Hoxa9_Hoxb9	ENSMUST00000108859.1|Arfgap1|ENSMUSG00000027575.13|ADP-ribosylation factor GTPase activating protein 1
mm10_v2_chr7_+_30231884_30231948	0.0717982	Hoxa9_Hoxb9	ENSMUST00000019882.9|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr8_+_4134733_4134733	0.0717546	Hoxa9_Hoxb9	ENSMUST00000130372.1|Cd209g|ENSMUSG00000079168.3|CD209g antigen
mm10_v2_chr11_+_115403734_115403777	0.0709639	Hoxa9_Hoxb9	ENSMUST00000153983.1|Ict1|ENSMUSG00000018858.9|immature colon carcinoma transcript 1 	ENSMUST00000106539.3|Ict1|ENSMUSG00000018858.9|immature colon carcinoma transcript 1 	ENSMUST00000103036.4|Ict1|ENSMUSG00000018858.9|immature colon carcinoma transcript 1
mm10_v2_chr4_+_146502027_146502027	0.0706842	Hoxa9_Hoxb9	ENSMUST00000105735.2|Gm13247|ENSMUSG00000056300.8|predicted gene 13247
mm10_v2_chr5_+_63812447_63812538	0.068143	Hoxa9_Hoxb9	ENSMUST00000081747.3|0610040J01Rik|ENSMUSG00000060512.3|RIKEN cDNA 0610040J01 gene
mm10_v2_chr6_-_24168083_24168097	0.0620512	Hoxa9_Hoxb9	ENSMUST00000031713.8|Slc13a1|ENSMUSG00000029700.11|solute carrier family 13 (sodium/sulfate symporters), member 1
mm10_v2_chr1_+_89454769_89454885	0.0618734	Hoxa9_Hoxb9	ENSMUST00000027521.8|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 	ENSMUST00000074945.5|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm10_v2_chr5_+_145204523_145204668	0.0597035	Hoxa9_Hoxb9	ENSMUST00000085671.3|Zkscan5|ENSMUSG00000055991.9|zinc finger with KRAB and SCAN domains 5 	ENSMUST00000031601.7|Zkscan5|ENSMUSG00000055991.9|zinc finger with KRAB and SCAN domains 5
mm10_v2_chr2_+_32395896_32395896	0.0565291	Hoxa9_Hoxb9	ENSMUST00000028162.3|Ptges2|ENSMUSG00000026820.3|prostaglandin E synthase 2
mm10_v2_chr1_+_13668739_13668772	0.0541488	Hoxa9_Hoxb9	ENSMUST00000088542.3|Xkr9|ENSMUSG00000067813.3|X Kell blood group precursor related family member 9 homolog
mm10_v2_chr6_-_97148908_97148930	0.0540684	Hoxa9_Hoxb9	ENSMUST00000142116.1|Eogt|ENSMUSG00000035245.6|EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase 	ENSMUST00000113387.1|Eogt|ENSMUSG00000035245.6|EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase
mm10_v2_chr11_+_59542686_59542726	0.0513778	Hoxa9_Hoxb9	ENSMUST00000101148.2|Nlrp3|ENSMUSG00000032691.8|NLR family, pyrin domain containing 3
mm10_v2_chr17_+_33638056_33638110	0.046299	Hoxa9_Hoxb9	ENSMUST00000052079.7|Pram1|ENSMUSG00000032739.10|PML-RAR alpha-regulated adaptor molecule 1
mm10_v2_chr5_-_26039506_26039506	0.0423836	Hoxa9_Hoxb9	ENSMUST00000079447.2|Speer4a|ENSMUSG00000073119.2|spermatogenesis associated glutamate (E)-rich protein 4a
mm10_v2_chr6_-_143947061_143947088	0.0412928	Hoxa9_Hoxb9	ENSMUST00000124233.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr3_-_142881942_142882017	0.0401563	Hoxa9_Hoxb9	ENSMUST00000043812.8|Pkn2|ENSMUSG00000004591.10|protein kinase N2
mm10_v2_chr5_+_26257691_26257691	0.0391599	Hoxa9_Hoxb9	ENSMUST00000074148.6|Gm7361|ENSMUSG00000059645.6|predicted gene 7361
mm10_v2_chr2_-_177267036_177267036	0.0380603	Hoxa9_Hoxb9	ENSMUST00000108963.1|Gm14409|ENSMUSG00000078869.2|predicted gene 14409
mm10_v2_chr4_+_133130505_133130590	0.0367742	Hoxa9_Hoxb9	ENSMUST00000084241.5|Wasf2|ENSMUSG00000028868.7|WAS protein family, member 2 	ENSMUST00000138831.1|Wasf2|ENSMUSG00000028868.7|WAS protein family, member 2
mm10_v2_chr2_+_147364989_147365011	0.0359728	Hoxa9_Hoxb9	ENSMUST00000109968.2|Pax1|ENSMUSG00000037034.9|paired box gene 1
mm10_v2_chr4_+_44012638_44012660	0.0356544	Hoxa9_Hoxb9	ENSMUST00000107847.3|Clta|ENSMUSG00000028478.12|clathrin, light polypeptide (Lca) 	ENSMUST00000170241.1|Clta|ENSMUSG00000028478.12|clathrin, light polypeptide (Lca)
mm10_v2_chr6_-_50654438_50654448	0.0335303	Hoxa9_Hoxb9	ENSMUST00000031853.7|Npvf|ENSMUSG00000029831.7|neuropeptide VF precursor
mm10_v2_chr16_+_91225550_91225579	0.0295169	Hoxa9_Hoxb9	ENSMUST00000035608.8|Olig2|ENSMUSG00000039830.8|oligodendrocyte transcription factor 2
mm10_v2_chr4_+_144893127_144893151	0.0286159	Hoxa9_Hoxb9	ENSMUST00000142808.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr4_+_44012661_44012694	0.0258254	Hoxa9_Hoxb9	ENSMUST00000107849.3|Clta|ENSMUSG00000028478.12|clathrin, light polypeptide (Lca) 	ENSMUST00000107851.3|Clta|ENSMUSG00000028478.12|clathrin, light polypeptide (Lca) 	ENSMUST00000107845.3|Clta|ENSMUSG00000028478.12|clathrin, light polypeptide (Lca)
mm10_v2_chr6_+_56956466_56956466	0.0230037	Hoxa9_Hoxb9	ENSMUST00000096612.3|Vmn1r4|ENSMUSG00000071893.4|vomeronasal 1 receptor 4
mm10_v2_chr11_-_109472611_109472688	0.0220406	Hoxa9_Hoxb9	ENSMUST00000168740.1|Slc16a6|ENSMUSG00000041920.8|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm10_v2_chr18_+_20310738_20310811	0.0198824	Hoxa9_Hoxb9	ENSMUST00000077146.3|Dsg1a|ENSMUSG00000069441.3|desmoglein 1 alpha
mm10_v2_chr3_-_102782708_102782715	0.018085	Hoxa9_Hoxb9	ENSMUST00000029450.3|Tshb|ENSMUSG00000027857.4|thyroid stimulating hormone, beta subunit 	ENSMUST00000172026.1|Tshb|ENSMUSG00000027857.4|thyroid stimulating hormone, beta subunit 	ENSMUST00000170856.1|Tshb|ENSMUSG00000027857.4|thyroid stimulating hormone, beta subunit
mm10_v2_chr14_+_56042123_56042123	0.0174493	Hoxa9_Hoxb9	ENSMUST00000015576.4|Mcpt2|ENSMUSG00000022226.5|mast cell protease 2
mm10_v2_chr5_+_137787769_137787807	0.0173394	Hoxa9_Hoxb9	ENSMUST00000035852.7|Zcwpw1|ENSMUSG00000037108.7|zinc finger, CW type with PWWP domain 1
mm10_v2_chr3_+_32436376_32436376	0.0110327	Hoxa9_Hoxb9	ENSMUST00000108242.1|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr16_+_48816856_48816976	0.00855813	Hoxa9_Hoxb9	ENSMUST00000023328.6|Retnlb|ENSMUSG00000022650.6|resistin like beta
mm10_v2_chr19_-_7341848_7341863	0.0083862	Hoxa9_Hoxb9	ENSMUST00000171393.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2
mm10_v2_chrX_+_159303266_159303281	0.00542476	Hoxa9_Hoxb9	ENSMUST00000112491.1|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3
mm10_v2_chr4_-_96785186_96785186	0.00327084	Hoxa9_Hoxb9	ENSMUST00000107071.1|Gm12695|ENSMUSG00000078639.1|predicted gene 12695
