mm10_v2_chr10_+_4710119_4710166	2.67027	Hoxc9	ENSMUST00000105588.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha) 	ENSMUST00000105589.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha)
mm10_v2_chrX_+_49463926_49463973	1.52646	Hoxc9	ENSMUST00000130558.1|Arhgap36|ENSMUSG00000036198.6|Rho GTPase activating protein 36
mm10_v2_chr10_-_67912620_67912685	1.05401	Hoxc9	ENSMUST00000064656.7|Zfp365|ENSMUSG00000037855.9|zinc finger protein 365
mm10_v2_chr4_-_91376433_91376477	1.00908	Hoxc9	ENSMUST00000107109.2|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107111.2|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107120.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr16_-_37384940_37384978	0.892575	Hoxc9	ENSMUST00000114781.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like 	ENSMUST00000114780.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like
mm10_v2_chr16_-_37384915_37384931	0.890959	Hoxc9	ENSMUST00000114787.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like 	ENSMUST00000114782.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like 	ENSMUST00000023526.2|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like 	ENSMUST00000114775.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like
mm10_v2_chr4_-_91376490_91376502	0.811526	Hoxc9	ENSMUST00000107124.3|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr6_-_99044414_99044459	0.713689	Hoxc9	ENSMUST00000177507.1|Foxp1|ENSMUSG00000030067.11|forkhead box P1 	ENSMUST00000123992.1|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr8_-_105471481_105471526	0.679546	Hoxc9	ENSMUST00000014990.6|Tppp3|ENSMUSG00000014846.6|tubulin polymerization-promoting protein family member 3
mm10_v2_chr1_+_66321708_66321719	0.626905	Hoxc9	ENSMUST00000114013.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr2_+_102658640_102658669	0.6075	Hoxc9	ENSMUST00000080210.3|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr1_+_187997835_187997882	0.598764	Hoxc9	ENSMUST00000110938.1|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr11_-_100193246_100193256	0.583149	Hoxc9	ENSMUST00000059707.2|Krt9|ENSMUSG00000051617.3|keratin 9
mm10_v2_chr1_+_187997821_187997834	0.574303	Hoxc9	ENSMUST00000027906.6|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr6_-_55133014_55133029	0.54724	Hoxc9	ENSMUST00000003568.8|Crhr2|ENSMUSG00000003476.9|corticotropin releasing hormone receptor 2
mm10_v2_chr11_+_69125896_69125896	0.501007	Hoxc9	ENSMUST00000021268.2|Aloxe3|ENSMUSG00000020892.4|arachidonate lipoxygenase 3
mm10_v2_chr15_-_55113460_55113582	0.496473	Hoxc9	ENSMUST00000100659.2|Gm9920|ENSMUSG00000053749.6|predicted gene 9920 	ENSMUST00000110230.1|Gm9920|ENSMUSG00000053749.6|predicted gene 9920
mm10_v2_chr2_-_42653598_42653598	0.461833	Hoxc9	ENSMUST00000052550.6|Lrp1b|ENSMUSG00000049252.11|low density lipoprotein-related protein 1B (deleted in tumors)
mm10_v2_chr9_+_53771499_53771535	0.444215	Hoxc9	ENSMUST00000048670.8|Slc35f2|ENSMUSG00000042195.8|solute carrier family 35, member F2
mm10_v2_chr13_-_25270076_25270094	0.386089	Hoxc9	ENSMUST00000057866.6|Nrsn1|ENSMUSG00000048978.7|neurensin 1
mm10_v2_chr8_-_120228221_120228297	0.381554	Hoxc9	ENSMUST00000183235.1|A330074K22Rik|ENSMUSG00000097960.1|RIKEN cDNA A330074K22 gene
mm10_v2_chr10_-_88605017_88605152	0.365753	Hoxc9	ENSMUST00000119185.1|Mybpc1|ENSMUSG00000020061.11|myosin binding protein C, slow-type 	ENSMUST00000121629.1|Mybpc1|ENSMUSG00000020061.11|myosin binding protein C, slow-type
mm10_v2_chr7_-_30612731_30612744	0.328654	Hoxc9	ENSMUST00000006476.4|Upk1a|ENSMUSG00000006313.4|uroplakin 1A
mm10_v2_chr18_+_65582239_65582275	0.31827	Hoxc9	ENSMUST00000182684.1|Zfp532|ENSMUSG00000042439.6|zinc finger protein 532
mm10_v2_chr11_+_3330401_3330541	0.307442	Hoxc9	ENSMUST00000045153.4|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1
mm10_v2_chrX_-_105928547_105928583	0.288161	Hoxc9	ENSMUST00000101305.2|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm10_v2_chr9_+_35423582_35423589	0.27536	Hoxc9	ENSMUST00000154652.1|Cdon|ENSMUSG00000038119.8|cell adhesion molecule-related/down-regulated by oncogenes
mm10_v2_chr11_-_80080928_80081001	0.274719	Hoxc9	ENSMUST00000103233.3|Crlf3|ENSMUSG00000017561.10|cytokine receptor-like factor 3 	ENSMUST00000061283.8|Crlf3|ENSMUSG00000017561.10|cytokine receptor-like factor 3
mm10_v2_chr13_+_58281183_58281196	0.26022	Hoxc9	ENSMUST00000180882.1|Gm26555|ENSMUSG00000097399.1|predicted gene, 26555 	ENSMUST00000180452.1|Gm26555|ENSMUSG00000097399.1|predicted gene, 26555
mm10_v2_chr7_-_139582790_139582808	0.258851	Hoxc9	ENSMUST00000106095.2|Nkx6-2|ENSMUSG00000041309.11|NK6 homeobox 2
mm10_v2_chr3_+_66985680_66985692	0.25209	Hoxc9	ENSMUST00000065047.6|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr2_+_175010241_175010319	0.242944	Hoxc9	ENSMUST00000109069.1|Gm14444|ENSMUSG00000078906.3|predicted gene 14444 	ENSMUST00000109070.2|Gm14444|ENSMUSG00000078906.3|predicted gene 14444
mm10_v2_chr18_+_65582390_65582613	0.230809	Hoxc9	ENSMUST00000169679.1|Zfp532|ENSMUSG00000042439.6|zinc finger protein 532 	ENSMUST00000183326.1|Zfp532|ENSMUSG00000042439.6|zinc finger protein 532
mm10_v2_chrX_-_18461371_18461402	0.220965	Hoxc9	ENSMUST00000044188.4|4930578C19Rik|ENSMUSG00000037358.6|RIKEN cDNA 4930578C19 gene
mm10_v2_chr11_-_98022594_98022671	0.220685	Hoxc9	ENSMUST00000103144.3|Cacnb1|ENSMUSG00000020882.11|calcium channel, voltage-dependent, beta 1 subunit 	ENSMUST00000017552.6|Cacnb1|ENSMUSG00000020882.11|calcium channel, voltage-dependent, beta 1 subunit 	ENSMUST00000092736.4|Cacnb1|ENSMUSG00000020882.11|calcium channel, voltage-dependent, beta 1 subunit 	ENSMUST00000107562.1|Cacnb1|ENSMUSG00000020882.11|calcium channel, voltage-dependent, beta 1 subunit
mm10_v2_chr1_-_63769267_63769267	0.210217	Hoxc9	ENSMUST00000027102.1|4933402D24Rik|ENSMUSG00000025961.1|RIKEN cDNA 4933402D24 gene
mm10_v2_chr8_+_118283719_118283738	0.201715	Hoxc9	ENSMUST00000117160.1|Cdh13|ENSMUSG00000031841.12|cadherin 13
mm10_v2_chr18_-_32036941_32037019	0.200133	Hoxc9	ENSMUST00000134663.1|Myo7b|ENSMUSG00000024388.10|myosin VIIB
mm10_v2_chr11_-_94242701_94242729	0.195592	Hoxc9	ENSMUST00000061469.3|Wfikkn2|ENSMUSG00000044177.4|WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2
mm10_v2_chr4_+_107830958_107830985	0.186314	Hoxc9	ENSMUST00000106731.2|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
mm10_v2_chr4_+_136143497_136143497	0.179922	Hoxc9	ENSMUST00000008016.2|Id3|ENSMUSG00000007872.3|inhibitor of DNA binding 3
mm10_v2_chr6_+_52177498_52177498	0.171316	Hoxc9	ENSMUST00000070587.3|5730596B20Rik|ENSMUSG00000056468.3|RIKEN cDNA 5730596B20 gene
mm10_v2_chr6_+_54269135_54269161	0.158556	Hoxc9	ENSMUST00000114401.1|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr2_+_128967383_128967443	0.148259	Hoxc9	ENSMUST00000110320.2|Zc3h6|ENSMUSG00000042851.11|zinc finger CCCH type containing 6 	ENSMUST00000110319.2|Zc3h6|ENSMUSG00000042851.11|zinc finger CCCH type containing 6
mm10_v2_chr1_+_58210397_58210457	0.135555	Hoxc9	ENSMUST00000040442.5|Aox4|ENSMUSG00000038242.6|aldehyde oxidase 4
mm10_v2_chrX_-_37104523_37104528	0.12551	Hoxc9	ENSMUST00000130324.1|Upf3b|ENSMUSG00000036572.10|UPF3 regulator of nonsense transcripts homolog B (yeast)
mm10_v2_chr11_-_72215592_72215592	0.124225	Hoxc9	ENSMUST00000021157.8|Med31|ENSMUSG00000020801.8|mediator of RNA polymerase II transcription, subunit 31 homolog (yeast)
mm10_v2_chr3_-_33844255_33844313	0.123329	Hoxc9	ENSMUST00000029222.5|Ccdc39|ENSMUSG00000027676.5|coiled-coil domain containing 39
mm10_v2_chr18_+_65582281_65582310	0.114219	Hoxc9	ENSMUST00000183319.1|Zfp532|ENSMUSG00000042439.6|zinc finger protein 532
mm10_v2_chr1_-_45503282_45503282	0.113497	Hoxc9	ENSMUST00000086430.4|Col5a2|ENSMUSG00000026042.10|collagen, type V, alpha 2
mm10_v2_chr11_+_96271453_96271523	0.102576	Hoxc9	ENSMUST00000000010.8|Hoxb9|ENSMUSG00000020875.8|homeobox B9 	ENSMUST00000174042.1|Hoxb9|ENSMUSG00000020875.8|homeobox B9
mm10_v2_chr3_+_66985700_66985740	0.0851207	Hoxc9	ENSMUST00000046542.6|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000162693.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr12_-_8499985_8500017	0.0780357	Hoxc9	ENSMUST00000067384.4|Rhob|ENSMUSG00000054364.4|ras homolog gene family, member B
mm10_v2_chr19_-_10880370_10880411	0.0733166	Hoxc9	ENSMUST00000133303.1|Tmem109|ENSMUSG00000034659.8|transmembrane protein 109
mm10_v2_chr3_+_66985647_66985678	0.0694102	Hoxc9	ENSMUST00000162362.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000065074.7|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr13_-_78197815_78197930	0.0681727	Hoxc9	ENSMUST00000127137.2|Nr2f1|ENSMUSG00000069171.7|nuclear receptor subfamily 2, group F, member 1
mm10_v2_chr7_-_116038734_116038750	0.0505879	Hoxc9	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr10_+_128411616_128411676	0.0362395	Hoxc9	ENSMUST00000096386.5|Rnf41|ENSMUSG00000025373.7|ring finger protein 41 	ENSMUST00000171342.1|Rnf41|ENSMUSG00000025373.7|ring finger protein 41
mm10_v2_chr17_+_24426676_24426701	0.0356824	Hoxc9	ENSMUST00000024946.5|Eci1|ENSMUSG00000024132.5|enoyl-Coenzyme A delta isomerase 1
mm10_v2_chr13_+_94083490_94083511	0.029271	Hoxc9	ENSMUST00000156071.1|Lhfpl2|ENSMUSG00000045312.5|lipoma HMGIC fusion partner-like 2
mm10_v2_chr2_+_91082362_91082390	0.0197564	Hoxc9	ENSMUST00000169852.1|Spi1|ENSMUSG00000002111.8|spleen focus forming virus (SFFV) proviral integration oncogene
mm10_v2_chr10_+_69925954_69926133	0.0113974	Hoxc9	ENSMUST00000181974.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000182795.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000182437.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr2_+_74721978_74722074	0.0111108	Hoxc9	ENSMUST00000047904.3|Hoxd3|ENSMUSG00000079277.3|homeobox D3
mm10_v2_chr17_-_40914350_40914350	0.00777905	Hoxc9	ENSMUST00000166343.1|Glyatl3|ENSMUSG00000091043.1|glycine-N-acyltransferase-like 3
