mm10_v2_chr9_-_45204083_45204106	0.809615	Hoxd1	ENSMUST00000034599.8|Tmprss4|ENSMUSG00000032091.8|transmembrane protease, serine 4
mm10_v2_chr15_-_101370125_101370169	0.569726	Hoxd1	ENSMUST00000077196.4|Krt80|ENSMUSG00000037185.8|keratin 80
mm10_v2_chr19_-_32196393_32196428	0.558117	Hoxd1	ENSMUST00000151822.1|Sgms1|ENSMUSG00000040451.11|sphingomyelin synthase 1
mm10_v2_chrX_+_9885622_9885622	0.551932	Hoxd1	ENSMUST00000067529.2|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5 	ENSMUST00000086165.3|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5
mm10_v2_chr17_-_45659312_45659335	0.509385	Hoxd1	ENSMUST00000120717.1|Capn11|ENSMUSG00000058626.10|calpain 11
mm10_v2_chr3_-_15575065_15575065	0.499298	Hoxd1	ENSMUST00000091319.4|Sirpb1b|ENSMUSG00000095028.1|signal-regulatory protein beta 1B
mm10_v2_chr6_-_124779686_124779742	0.494204	Hoxd1	ENSMUST00000147669.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000128697.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000032218.3|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000112475.2|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23
mm10_v2_chr17_+_17402672_17402771	0.426039	Hoxd1	ENSMUST00000115576.2|Lix1|ENSMUSG00000047786.12|limb expression 1 homolog (chicken)
mm10_v2_chr6_+_78370877_78370892	0.414285	Hoxd1	ENSMUST00000096904.3|Reg3b|ENSMUSG00000071356.5|regenerating islet-derived 3 beta
mm10_v2_chr13_-_102905740_102905814	0.398362	Hoxd1	ENSMUST00000167462.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr4_-_147702553_147702553	0.388293	Hoxd1	ENSMUST00000117638.1|Zfp534|ENSMUSG00000062518.7|zinc finger protein 534
mm10_v2_chr4_+_102570065_102570124	0.388056	Hoxd1	ENSMUST00000097950.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr7_+_45621805_45621825	0.383695	Hoxd1	ENSMUST00000033100.4|Izumo1|ENSMUSG00000064158.4|izumo sperm-egg fusion 1
mm10_v2_chr4_+_146097312_146097345	0.379088	Hoxd1	ENSMUST00000105730.1|Gm13051|ENSMUSG00000066009.8|predicted gene 13051 	ENSMUST00000091878.5|Gm13051|ENSMUSG00000066009.8|predicted gene 13051
mm10_v2_chr12_-_112802646_112802665	0.359407	Hoxd1	ENSMUST00000124526.1|Ahnak2|ENSMUSG00000072812.4|AHNAK nucleoprotein 2
mm10_v2_chr16_-_55934797_55934840	0.336221	Hoxd1	ENSMUST00000122280.1|Cep97|ENSMUSG00000022604.12|centrosomal protein 97 	ENSMUST00000121703.2|Cep97|ENSMUSG00000022604.12|centrosomal protein 97
mm10_v2_chrX_-_143933089_143933142	0.333832	Hoxd1	ENSMUST00000087313.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr13_-_102906046_102906111	0.325952	Hoxd1	ENSMUST00000171791.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr2_+_170731807_170731920	0.320162	Hoxd1	ENSMUST00000029075.4|Dok5|ENSMUSG00000027560.4|docking protein 5
mm10_v2_chr16_-_19883873_19883915	0.313444	Hoxd1	ENSMUST00000100083.3|A930003A15Rik|ENSMUSG00000075330.3|RIKEN cDNA A930003A15 gene
mm10_v2_chr9_+_119063429_119063467	0.311065	Hoxd1	ENSMUST00000141185.1|Vill|ENSMUSG00000038775.8|villin-like 	ENSMUST00000126251.1|Vill|ENSMUSG00000038775.8|villin-like 	ENSMUST00000136561.1|Vill|ENSMUSG00000038775.8|villin-like
mm10_v2_chr4_+_145670685_145670685	0.308931	Hoxd1	ENSMUST00000105738.2|Gm13242|ENSMUSG00000058186.7|predicted gene 13242
mm10_v2_chr3_-_15426427_15426427	0.304483	Hoxd1	ENSMUST00000099201.3|Sirpb1a|ENSMUSG00000095788.1|signal-regulatory protein beta 1A
mm10_v2_chrX_-_143933204_143933311	0.30216	Hoxd1	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr6_+_123262107_123262185	0.293783	Hoxd1	ENSMUST00000032240.2|Clec4d|ENSMUSG00000030144.2|C-type lectin domain family 4, member d
mm10_v2_chr13_+_42866247_42866301	0.292019	Hoxd1	ENSMUST00000131942.1|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1
mm10_v2_chr1_-_127840290_127840290	0.291307	Hoxd1	ENSMUST00000061512.2|Map3k19|ENSMUSG00000051590.2|mitogen-activated protein kinase kinase kinase 19
mm10_v2_chr7_+_30977043_30977071	0.28258	Hoxd1	ENSMUST00000058093.4|Fam187b|ENSMUSG00000046826.5|family with sequence similarity 187, member B
mm10_v2_chr9_-_107872403_107872422	0.267762	Hoxd1	ENSMUST00000183035.1|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chr2_-_32387760_32387797	0.264912	Hoxd1	ENSMUST00000050785.8|Lcn2|ENSMUSG00000026822.9|lipocalin 2
mm10_v2_chr13_-_67332525_67332553	0.263518	Hoxd1	ENSMUST00000168892.1|Zfp595|ENSMUSG00000057842.7|zinc finger protein 595 	ENSMUST00000109735.2|Zfp595|ENSMUSG00000057842.7|zinc finger protein 595
mm10_v2_chr15_-_34356421_34356421	0.261675	Hoxd1	ENSMUST00000179647.1|9430069I07Rik|ENSMUSG00000094447.1|RIKEN cDNA 9430069I07 gene
mm10_v2_chr15_+_25773985_25774042	0.248486	Hoxd1	ENSMUST00000125667.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr1_+_65186727_65186750	0.245252	Hoxd1	ENSMUST00000097707.4|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing 	ENSMUST00000081154.7|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing
mm10_v2_chr17_-_32886083_32886083	0.242325	Hoxd1	ENSMUST00000178401.1|Zfp870|ENSMUSG00000095325.1|zinc finger protein 870
mm10_v2_chr6_-_3399545_3399574	0.237615	Hoxd1	ENSMUST00000120087.3|Samd9l|ENSMUSG00000047735.12|sterile alpha motif domain containing 9-like
mm10_v2_chr5_+_29195983_29196032	0.230606	Hoxd1	ENSMUST00000160888.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000159272.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000001247.5|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000161398.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000160246.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32
mm10_v2_chr1_+_88055467_88055481	0.229659	Hoxd1	ENSMUST00000173325.1|Ugt1a10|ENSMUSG00000090165.2|UDP glycosyltransferase 1 family, polypeptide A10
mm10_v2_chr9_-_123851855_123851912	0.225011	Hoxd1	ENSMUST00000184082.1|Fyco1|ENSMUSG00000025241.9|FYVE and coiled-coil domain containing 1 	ENSMUST00000167595.2|Fyco1|ENSMUSG00000025241.9|FYVE and coiled-coil domain containing 1
mm10_v2_chr11_-_99244058_99244136	0.22488	Hoxd1	ENSMUST00000103132.3|Krt222|ENSMUSG00000035849.8|keratin 222 	ENSMUST00000038214.6|Krt222|ENSMUSG00000035849.8|keratin 222
mm10_v2_chr1_+_157506728_157506776	0.22408	Hoxd1	ENSMUST00000086130.2|Sec16b|ENSMUSG00000026589.8|SEC16 homolog B (S. cerevisiae)
mm10_v2_chr1_+_157506777_157506811	0.223349	Hoxd1	ENSMUST00000027881.8|Sec16b|ENSMUSG00000026589.8|SEC16 homolog B (S. cerevisiae)
mm10_v2_chr3_-_85722474_85722474	0.220721	Hoxd1	ENSMUST00000119077.1|Fam160a1|ENSMUSG00000051000.11|family with sequence similarity 160, member A1
mm10_v2_chr7_+_29170204_29170224	0.219479	Hoxd1	ENSMUST00000098609.2|Ggn|ENSMUSG00000031493.9|gametogenetin
mm10_v2_chr1_+_88070765_88070800	0.216419	Hoxd1	ENSMUST00000073772.4|Ugt1a9|ENSMUSG00000090175.1|UDP glucuronosyltransferase 1 family, polypeptide A9
mm10_v2_chr6_-_69400097_69400097	0.203732	Hoxd1	ENSMUST00000177795.1|Igkv4-62|ENSMUSG00000094262.1|immunoglobulin kappa variable 4-62
mm10_v2_chr4_+_145585166_145585211	0.19723	Hoxd1	ENSMUST00000105739.1|Gm13212|ENSMUSG00000078502.4|predicted gene 13212 	ENSMUST00000119718.1|Gm13212|ENSMUSG00000078502.4|predicted gene 13212
mm10_v2_chr3_-_15848419_15848528	0.19219	Hoxd1	ENSMUST00000108354.1|Sirpb1c|ENSMUSG00000074677.5|signal-regulatory protein beta 1C 	ENSMUST00000108349.1|Sirpb1c|ENSMUSG00000074677.5|signal-regulatory protein beta 1C 	ENSMUST00000108352.2|Sirpb1c|ENSMUSG00000074677.5|signal-regulatory protein beta 1C 	ENSMUST00000108350.1|Sirpb1c|ENSMUSG00000074677.5|signal-regulatory protein beta 1C 	ENSMUST00000050623.4|Sirpb1c|ENSMUSG00000074677.5|signal-regulatory protein beta 1C
mm10_v2_chr9_-_85749308_85749356	0.191176	Hoxd1	ENSMUST00000039213.8|Ibtk|ENSMUSG00000035941.9|inhibitor of Bruton agammaglobulinemia tyrosine kinase
mm10_v2_chr10_+_75037066_75037100	0.185758	Hoxd1	ENSMUST00000147802.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family 	ENSMUST00000020391.5|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr4_-_148152059_148152146	0.178678	Hoxd1	ENSMUST00000056965.5|Fbxo6|ENSMUSG00000055401.8|F-box protein 6 	ENSMUST00000168503.1|Fbxo6|ENSMUSG00000055401.8|F-box protein 6 	ENSMUST00000152098.1|Fbxo6|ENSMUSG00000055401.8|F-box protein 6
mm10_v2_chr9_+_66797039_66797039	0.178295	Hoxd1	ENSMUST00000098612.2|Gm10647|ENSMUSG00000074232.2|predicted gene 10647
mm10_v2_chr6_+_115931922_115931937	0.177447	Hoxd1	ENSMUST00000032471.6|Rho|ENSMUSG00000030324.6|rhodopsin
mm10_v2_chr4_+_103143052_103143071	0.176343	Hoxd1	ENSMUST00000106855.1|Mier1|ENSMUSG00000028522.10|mesoderm induction early response 1 homolog (Xenopus laevis
mm10_v2_chr10_-_110000219_110000219	0.176339	Hoxd1	ENSMUST00000032719.7|Nav3|ENSMUSG00000020181.9|neuron navigator 3
mm10_v2_chr18_+_37355271_37355271	0.17506	Hoxd1	ENSMUST00000051163.1|Pcdhb8|ENSMUSG00000045876.3|protocadherin beta 8
mm10_v2_chr10_+_116966274_116966295	0.173086	Hoxd1	ENSMUST00000033651.3|D630029K05Rik|ENSMUSG00000031294.3|RIKEN cDNA D630029K05 gene
mm10_v2_chr2_-_168767136_168767201	0.171271	Hoxd1	ENSMUST00000029061.5|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila) 	ENSMUST00000103074.1|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr13_-_105054895_105054930	0.168435	Hoxd1	ENSMUST00000063551.5|Rgs7bp|ENSMUSG00000021719.8|regulator of G-protein signalling 7 binding protein
mm10_v2_chr1_+_88055377_88055449	0.167107	Hoxd1	ENSMUST00000138182.1|Ugt1a10|ENSMUSG00000090165.2|UDP glycosyltransferase 1 family, polypeptide A10 	ENSMUST00000113142.3|Ugt1a10|ENSMUSG00000090165.2|UDP glycosyltransferase 1 family, polypeptide A10
mm10_v2_chr10_+_116018213_116018421	0.166784	Hoxd1	ENSMUST00000063470.4|Ptprr|ENSMUSG00000020151.10|protein tyrosine phosphatase, receptor type, R
mm10_v2_chr18_+_31609512_31609512	0.166616	Hoxd1	ENSMUST00000164667.1|B930094E09Rik|ENSMUSG00000092124.1|RIKEN cDNA B930094E09 gene
mm10_v2_chr18_+_12741324_12741355	0.165274	Hoxd1	ENSMUST00000115857.2|Cabyr|ENSMUSG00000024430.7|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 	ENSMUST00000121018.1|Cabyr|ENSMUSG00000024430.7|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 	ENSMUST00000119108.1|Cabyr|ENSMUSG00000024430.7|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)
mm10_v2_chr2_+_121956411_121956480	0.163054	Hoxd1	ENSMUST00000110578.1|Ctdspl2|ENSMUSG00000033411.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm10_v2_chr4_+_147553277_147553339	0.162856	Hoxd1	ENSMUST00000139784.1|Gm13154|ENSMUSG00000065999.7|predicted gene 13154 	ENSMUST00000143885.1|Gm13154|ENSMUSG00000065999.7|predicted gene 13154 	ENSMUST00000081742.6|Gm13154|ENSMUSG00000065999.7|predicted gene 13154
mm10_v2_chr4_+_146514920_146514920	0.15917	Hoxd1	ENSMUST00000140089.1|Gm13247|ENSMUSG00000056300.8|predicted gene 13247 	ENSMUST00000179175.1|Gm13247|ENSMUSG00000056300.8|predicted gene 13247
mm10_v2_chr5_+_102768771_102768815	0.158432	Hoxd1	ENSMUST00000112852.1|Arhgap24|ENSMUSG00000057315.8|Rho GTPase activating protein 24
mm10_v2_chr12_+_80644212_80644265	0.156422	Hoxd1	ENSMUST00000085245.5|Slc39a9|ENSMUSG00000048833.8|solute carrier family 39 (zinc transporter), member 9
mm10_v2_chr2_-_156392829_156392993	0.154166	Hoxd1	ENSMUST00000088578.2|2900097C17Rik|ENSMUSG00000067833.2|RIKEN cDNA 2900097C17 gene
mm10_v2_chr16_+_52031549_52031570	0.152373	Hoxd1	ENSMUST00000114471.1|Cblb|ENSMUSG00000022637.10|Casitas B-lineage lymphoma b
mm10_v2_chr7_+_29816061_29816153	0.151892	Hoxd1	ENSMUST00000032796.6|Zfp790|ENSMUSG00000011427.9|zinc finger protein 790 	ENSMUST00000178162.1|Zfp790|ENSMUSG00000011427.9|zinc finger protein 790
mm10_v2_chr17_+_34931253_34931343	0.146297	Hoxd1	ENSMUST00000007253.5|Neu1|ENSMUSG00000007038.5|neuraminidase 1
mm10_v2_chr7_-_44929410_44929521	0.14479	Hoxd1	ENSMUST00000107857.3|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000085399.6|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000167930.1|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000166972.1|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit
mm10_v2_chr18_-_3281036_3281132	0.144789	Hoxd1	ENSMUST00000049942.6|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator 	ENSMUST00000139537.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator 	ENSMUST00000124747.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator
mm10_v2_chr4_-_147809788_147809840	0.140422	Hoxd1	ENSMUST00000105734.3|Gm13157|ENSMUSG00000078495.4|predicted gene 13157 	ENSMUST00000176201.1|Gm20707|ENSMUSG00000093594.1|predicted gene 20707
mm10_v2_chr7_-_6730412_6730431	0.140048	Hoxd1	ENSMUST00000051209.4|Peg3|ENSMUSG00000002265.9|paternally expressed 3
mm10_v2_chr6_-_128275577_128275577	0.138152	Hoxd1	ENSMUST00000130454.1|Tead4|ENSMUSG00000030353.9|TEA domain family member 4
mm10_v2_chr10_-_120112946_120112987	0.138074	Hoxd1	ENSMUST00000020449.5|Helb|ENSMUSG00000020228.5|helicase (DNA) B
mm10_v2_chr2_+_69897255_69897303	0.137544	Hoxd1	ENSMUST00000131553.1|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr6_-_116716888_116716923	0.13694	Hoxd1	ENSMUST00000056623.6|Tmem72|ENSMUSG00000048108.7|transmembrane protein 72
mm10_v2_chr12_+_109545390_109545443	0.13532	Hoxd1	ENSMUST00000146701.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3
mm10_v2_chr2_+_121956651_121956664	0.13416	Hoxd1	ENSMUST00000110574.1|Ctdspl2|ENSMUSG00000033411.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm10_v2_chrX_-_60893430_60893440	0.132424	Hoxd1	ENSMUST00000135107.2|Sox3|ENSMUSG00000045179.8|SRY-box containing gene 3
mm10_v2_chr2_+_109917639_109917656	0.125918	Hoxd1	ENSMUST00000046548.7|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4 	ENSMUST00000111037.2|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4
mm10_v2_chr17_-_36032682_36032855	0.123424	Hoxd1	ENSMUST00000102678.4|H2-T23|ENSMUSG00000067212.8|histocompatibility 2, T region locus 23
mm10_v2_chr2_+_91257323_91257371	0.123245	Hoxd1	ENSMUST00000111349.2|Pacsin3|ENSMUSG00000027257.7|protein kinase C and casein kinase substrate in neurons 3 	ENSMUST00000131711.1|Pacsin3|ENSMUSG00000027257.7|protein kinase C and casein kinase substrate in neurons 3
mm10_v2_chr11_+_35121126_35121224	0.119953	Hoxd1	ENSMUST00000069837.3|Slit3|ENSMUSG00000056427.4|slit homolog 3 (Drosophila)
mm10_v2_chr12_+_52699297_52699411	0.119898	Hoxd1	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chr10_+_63024315_63024315	0.118503	Hoxd1	ENSMUST00000124784.1|Pbld2|ENSMUSG00000020068.4|phenazine biosynthesis-like protein domain containing 2
mm10_v2_chr7_-_24724237_24724237	0.117381	Hoxd1	ENSMUST00000081657.4|Gm4763|ENSMUSG00000058717.7|predicted gene 4763
mm10_v2_chr13_-_74807913_74807989	0.117198	Hoxd1	ENSMUST00000065629.4|Cast|ENSMUSG00000021585.8|calpastatin
mm10_v2_chr2_-_84715160_84715218	0.115842	Hoxd1	ENSMUST00000035840.5|Zdhhc5|ENSMUSG00000034075.10|zinc finger, DHHC domain containing 5
mm10_v2_chr9_-_15301555_15301607	0.115582	Hoxd1	ENSMUST00000034414.8|4931406C07Rik|ENSMUSG00000031938.8|RIKEN cDNA 4931406C07 gene
mm10_v2_chr3_+_19985612_19985643	0.115472	Hoxd1	ENSMUST00000172860.1|Cp|ENSMUSG00000003617.10|ceruloplasmin
mm10_v2_chr13_+_21717626_21717631	0.115252	Hoxd1	ENSMUST00000091754.2|Hist1h3h|ENSMUSG00000069312.2|histone cluster 1, H3h
mm10_v2_chr16_-_16600533_16600576	0.113948	Hoxd1	ENSMUST00000159542.1|Fgd4|ENSMUSG00000022788.10|FYVE, RhoGEF and PH domain containing 4
mm10_v2_chr3_+_40800778_40800786	0.112259	Hoxd1	ENSMUST00000169566.1|Plk4|ENSMUSG00000025758.5|polo-like kinase 4
mm10_v2_chr2_+_126556128_126556128	0.112087	Hoxd1	ENSMUST00000141482.2|Slc27a2|ENSMUSG00000027359.10|solute carrier family 27 (fatty acid transporter), member 2
mm10_v2_chr19_+_58759700_58759745	0.111892	Hoxd1	ENSMUST00000026081.3|Pnliprp2|ENSMUSG00000025091.3|pancreatic lipase-related protein 2
mm10_v2_chrX_-_75578188_75578247	0.111157	Hoxd1	ENSMUST00000033545.5|Rab39b|ENSMUSG00000031202.5|RAB39B, member RAS oncogene family
mm10_v2_chr11_+_60537978_60538074	0.108744	Hoxd1	ENSMUST00000044250.3|Alkbh5|ENSMUSG00000042650.3|alkB, alkylation repair homolog 5 (E. coli)
mm10_v2_chr19_+_3323301_3323339	0.104995	Hoxd1	ENSMUST00000025835.4|Cpt1a|ENSMUSG00000024900.4|carnitine palmitoyltransferase 1a, liver
mm10_v2_chr11_-_30649510_30649587	0.103842	Hoxd1	ENSMUST00000074613.3|Acyp2|ENSMUSG00000060923.5|acylphosphatase 2, muscle type
mm10_v2_chr7_+_127511976_127512075	0.101088	Hoxd1	ENSMUST00000098025.4|Srcap|ENSMUSG00000053877.6|Snf2-related CREBBP activator protein
mm10_v2_chr4_+_145514884_145514884	0.0999966	Hoxd1	ENSMUST00000105741.1|Gm13225|ENSMUSG00000078503.3|predicted gene 13225
mm10_v2_chr19_+_55895508_55895511	0.0994564	Hoxd1	ENSMUST00000111646.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr3_-_41742471_41742548	0.098954	Hoxd1	ENSMUST00000026866.8|Sclt1|ENSMUSG00000059834.6|sodium channel and clathrin linker 1
mm10_v2_chr15_-_9529868_9529881	0.0949798	Hoxd1	ENSMUST00000003981.4|Il7r|ENSMUSG00000003882.4|interleukin 7 receptor
mm10_v2_chr2_+_3424123_3424207	0.0863982	Hoxd1	ENSMUST00000061852.5|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) 	ENSMUST00000100463.3|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) 	ENSMUST00000102988.3|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) 	ENSMUST00000115066.1|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae)
mm10_v2_chr4_+_145510759_145510791	0.086371	Hoxd1	ENSMUST00000105742.1|Gm13225|ENSMUSG00000078503.3|predicted gene 13225 	ENSMUST00000136309.1|Gm13225|ENSMUSG00000078503.3|predicted gene 13225
mm10_v2_chr5_-_70842617_70842617	0.0821831	Hoxd1	ENSMUST00000031119.1|Gabrg1|ENSMUSG00000001260.6|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1
mm10_v2_chr8_+_113635787_113635842	0.0796478	Hoxd1	ENSMUST00000035777.8|Mon1b|ENSMUSG00000078908.3|MON1 homolog b (yeast)
mm10_v2_chrX_-_160906998_160907052	0.0796212	Hoxd1	ENSMUST00000069417.5|Gja6|ENSMUSG00000055691.5|gap junction protein, alpha 6
mm10_v2_chr3_-_113291449_113291449	0.0786818	Hoxd1	ENSMUST00000179568.1|Amy2a4|ENSMUSG00000096770.1|amylase 2a4
mm10_v2_chr1_+_40439767_40439788	0.077836	Hoxd1	ENSMUST00000173514.1|Il1rl1|ENSMUSG00000026069.9|interleukin 1 receptor-like 1
mm10_v2_chr1_-_65186456_65186504	0.0766212	Hoxd1	ENSMUST00000169032.1|Idh1|ENSMUSG00000025950.10|isocitrate dehydrogenase 1 (NADP+), soluble
mm10_v2_chr6_+_72097561_72097630	0.0765903	Hoxd1	ENSMUST00000069994.4|St3gal5|ENSMUSG00000056091.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 5 	ENSMUST00000114112.1|St3gal5|ENSMUSG00000056091.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 5
mm10_v2_chr2_-_168767029_168767104	0.0762736	Hoxd1	ENSMUST00000075044.3|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr9_-_55919605_55919605	0.0758898	Hoxd1	ENSMUST00000037408.8|Scaper|ENSMUSG00000034007.9|S phase cyclin A-associated protein in the ER
mm10_v2_chr2_-_79908428_79908438	0.0742552	Hoxd1	ENSMUST00000102652.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent 	ENSMUST00000102651.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr19_-_53944621_53944632	0.0729471	Hoxd1	ENSMUST00000135402.2|Bbip1|ENSMUSG00000084957.2|BBSome interacting protein 1
mm10_v2_chr12_-_87388317_87388355	0.0721545	Hoxd1	ENSMUST00000021424.4|Sptlc2|ENSMUSG00000021036.4|serine palmitoyltransferase, long chain base subunit 2
mm10_v2_chr16_-_55934845_55934868	0.071713	Hoxd1	ENSMUST00000121129.1|Cep97|ENSMUSG00000022604.12|centrosomal protein 97 	ENSMUST00000023270.7|Cep97|ENSMUSG00000022604.12|centrosomal protein 97
mm10_v2_chr7_+_128744870_128745020	0.0710568	Hoxd1	ENSMUST00000042942.8|Sec23ip|ENSMUSG00000055319.7|Sec23 interacting protein
mm10_v2_chr5_-_123012874_123012880	0.0708558	Hoxd1	ENSMUST00000172729.1|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr14_-_75754475_75754563	0.0703095	Hoxd1	ENSMUST00000049168.7|Cog3|ENSMUSG00000034893.7|component of oligomeric golgi complex 3
mm10_v2_chr8_-_105966038_105966120	0.0700741	Hoxd1	ENSMUST00000116429.2|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4 	ENSMUST00000034370.9|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4
mm10_v2_chr4_+_146502027_146502027	0.0691828	Hoxd1	ENSMUST00000105735.2|Gm13247|ENSMUSG00000056300.8|predicted gene 13247
mm10_v2_chr17_+_36837123_36837211	0.067303	Hoxd1	ENSMUST00000179968.1|Trim26|ENSMUSG00000024457.10|tripartite motif-containing 26 	ENSMUST00000130367.1|Trim26|ENSMUSG00000024457.10|tripartite motif-containing 26 	ENSMUST00000130801.1|Trim26|ENSMUSG00000024457.10|tripartite motif-containing 26 	ENSMUST00000144182.1|Trim26|ENSMUSG00000024457.10|tripartite motif-containing 26 	ENSMUST00000123715.1|Trim26|ENSMUSG00000024457.10|tripartite motif-containing 26 	ENSMUST00000053434.8|Trim26|ENSMUSG00000024457.10|tripartite motif-containing 26
mm10_v2_chr5_+_136987019_136987019	0.0662097	Hoxd1	ENSMUST00000004968.4|Plod3|ENSMUSG00000004846.4|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
mm10_v2_chr8_+_113635550_113635597	0.0656498	Hoxd1	ENSMUST00000179926.1|Mon1b|ENSMUSG00000078908.3|MON1 homolog b (yeast)
mm10_v2_chr5_-_77115145_77115156	0.0638358	Hoxd1	ENSMUST00000081964.5|Hopx|ENSMUSG00000059325.8|HOP homeobox
mm10_v2_chr3_-_116712644_116712655	0.0637439	Hoxd1	ENSMUST00000029569.2|Slc35a3|ENSMUSG00000027957.7|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3
mm10_v2_chr19_-_5560570_5560582	0.0635856	Hoxd1	ENSMUST00000025861.1|Ovol1|ENSMUSG00000024922.1|OVO homolog-like 1 (Drosophila)
mm10_v2_chr14_+_48446128_48446276	0.0618902	Hoxd1	ENSMUST00000124720.1|Tmem260|ENSMUSG00000036339.11|transmembrane protein 260
mm10_v2_chr19_+_23723279_23723279	0.0599722	Hoxd1	ENSMUST00000067077.1|Gm9938|ENSMUSG00000054178.1|predicted gene 9938
mm10_v2_chr2_-_116067391_116067444	0.0587437	Hoxd1	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr1_+_40439627_40439649	0.0585885	Hoxd1	ENSMUST00000097772.3|Il1rl1|ENSMUSG00000026069.9|interleukin 1 receptor-like 1
mm10_v2_chr10_+_116177217_116177258	0.0584126	Hoxd1	ENSMUST00000148731.1|Ptprr|ENSMUSG00000020151.10|protein tyrosine phosphatase, receptor type, R
mm10_v2_chr14_+_55559993_55560006	0.0568115	Hoxd1	ENSMUST00000117236.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr17_-_28560704_28560766	0.0564916	Hoxd1	ENSMUST00000114785.1|Clps|ENSMUSG00000024225.4|colipase, pancreatic 	ENSMUST00000025062.3|Clps|ENSMUSG00000024225.4|colipase, pancreatic
mm10_v2_chr14_-_51071442_51071442	0.0538454	Hoxd1	ENSMUST00000048478.5|Olfr750|ENSMUSG00000035932.5|olfactory receptor 750
mm10_v2_chr19_+_53460610_53460654	0.0521543	Hoxd1	ENSMUST00000180442.1|4833407H14Rik|ENSMUSG00000097779.1|RIKEN cDNA 4833407H14 gene
mm10_v2_chr7_+_23983961_23983961	0.0504369	Hoxd1	ENSMUST00000077386.4|Vmn1r181|ENSMUSG00000057946.4|vomeronasal 1 receptor 181
mm10_v2_chr7_+_135268579_135268619	0.0478981	Hoxd1	ENSMUST00000097983.3|Nps|ENSMUSG00000073804.3|neuropeptide S
mm10_v2_chr10_-_112928974_112929026	0.0451528	Hoxd1	ENSMUST00000099276.2|Atxn7l3b|ENSMUSG00000074748.2|ataxin 7-like 3B
mm10_v2_chr5_-_136986829_136986901	0.0445809	Hoxd1	ENSMUST00000034953.7|Znhit1|ENSMUSG00000059518.8|zinc finger, HIT domain containing 1 	ENSMUST00000085941.5|Znhit1|ENSMUSG00000059518.8|zinc finger, HIT domain containing 1
mm10_v2_chr15_-_37459327_37459380	0.0444642	Hoxd1	ENSMUST00000119730.1|Ncald|ENSMUSG00000051359.8|neurocalcin delta 	ENSMUST00000120746.1|Ncald|ENSMUSG00000051359.8|neurocalcin delta
mm10_v2_chr2_-_79908389_79908403	0.044113	Hoxd1	ENSMUST00000090756.4|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr14_+_122034660_122034677	0.0429353	Hoxd1	ENSMUST00000045976.6|Timm8a2|ENSMUSG00000071229.3|translocase of inner mitochondrial membrane 8A2
mm10_v2_chr19_-_56389877_56390043	0.0426331	Hoxd1	ENSMUST00000166203.1|Nrap|ENSMUSG00000049134.9|nebulin-related anchoring protein 	ENSMUST00000167239.1|Nrap|ENSMUSG00000049134.9|nebulin-related anchoring protein 	ENSMUST00000040711.8|Nrap|ENSMUSG00000049134.9|nebulin-related anchoring protein 	ENSMUST00000095947.4|Nrap|ENSMUSG00000049134.9|nebulin-related anchoring protein 	ENSMUST00000073536.6|Nrap|ENSMUSG00000049134.9|nebulin-related anchoring protein
mm10_v2_chr2_-_150255591_150255591	0.0418504	Hoxd1	ENSMUST00000063463.5|Gm21994|ENSMUSG00000074735.2|predicted gene 21994
mm10_v2_chr16_+_11406618_11406675	0.0410815	Hoxd1	ENSMUST00000122168.1|Snx29|ENSMUSG00000071669.8|sorting nexin 29
mm10_v2_chr10_-_86011833_86011896	0.0400633	Hoxd1	ENSMUST00000105304.1|Bpifc|ENSMUSG00000050108.6|BPI fold containing family C 	ENSMUST00000061699.5|Bpifc|ENSMUSG00000050108.6|BPI fold containing family C
mm10_v2_chr12_+_10390756_10390836	0.0390605	Hoxd1	ENSMUST00000020947.5|Rdh14|ENSMUSG00000020621.5|retinol dehydrogenase 14 (all-trans and 9-cis)
mm10_v2_chr9_+_119341294_119341363	0.039011	Hoxd1	ENSMUST00000039784.5|Acaa1a|ENSMUSG00000036138.10|acetyl-Coenzyme A acyltransferase 1A
mm10_v2_chr5_+_145204523_145204668	0.0388907	Hoxd1	ENSMUST00000085671.3|Zkscan5|ENSMUSG00000055991.9|zinc finger with KRAB and SCAN domains 5 	ENSMUST00000031601.7|Zkscan5|ENSMUSG00000055991.9|zinc finger with KRAB and SCAN domains 5
mm10_v2_chr9_-_119341390_119341420	0.0371764	Hoxd1	ENSMUST00000139870.1|Myd88|ENSMUSG00000032508.8|myeloid differentiation primary response gene 88
mm10_v2_chr4_+_134930898_134930997	0.0364083	Hoxd1	ENSMUST00000030622.2|Syf2|ENSMUSG00000028821.2|SYF2 homolog, RNA splicing factor (S. cerevisiae)
mm10_v2_chr10_-_117148474_117148510	0.0331373	Hoxd1	ENSMUST00000020381.3|Frs2|ENSMUSG00000020170.3|fibroblast growth factor receptor substrate 2
mm10_v2_chr2_+_150190393_150190393	0.0317297	Hoxd1	ENSMUST00000109929.2|Gm14139|ENSMUSG00000079009.2|predicted gene 14139
mm10_v2_chr10_+_94575257_94575295	0.0312293	Hoxd1	ENSMUST00000121471.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr5_-_108795352_108795374	0.0308969	Hoxd1	ENSMUST00000004943.1|Tmed11|ENSMUSG00000004821.1|transmembrane emp24 protein transport domain containing
mm10_v2_chr12_-_84617326_84617466	0.0303727	Hoxd1	ENSMUST00000021666.4|Abcd4|ENSMUSG00000021240.5|ATP-binding cassette, sub-family D (ALD), member 4
mm10_v2_chr10_-_8886033_8886076	0.0302926	Hoxd1	ENSMUST00000015449.5|Sash1|ENSMUSG00000015305.5|SAM and SH3 domain containing 1
mm10_v2_chr15_-_8710734_8710764	0.0298101	Hoxd1	ENSMUST00000005493.7|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr5_+_90561102_90561209	0.0265184	Hoxd1	ENSMUST00000094615.4|5830473C10Rik|ENSMUSG00000070690.4|RIKEN cDNA 5830473C10 gene
mm10_v2_chr14_-_70429072_70429096	0.0241721	Hoxd1	ENSMUST00000048129.4|Piwil2|ENSMUSG00000033644.4|piwi-like RNA-mediated gene silencing 2
mm10_v2_chr18_-_60273267_60273267	0.0211494	Hoxd1	ENSMUST00000090260.4|Gm4841|ENSMUSG00000068606.5|predicted gene 4841
mm10_v2_chr16_-_38800193_38800209	0.0198765	Hoxd1	ENSMUST00000057767.4|Upk1b|ENSMUSG00000049436.4|uroplakin 1B
mm10_v2_chr11_-_107337556_107337637	0.0182169	Hoxd1	ENSMUST00000040380.6|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr1_-_172027269_172027313	0.0177251	Hoxd1	ENSMUST00000027837.6|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila) 	ENSMUST00000111264.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr19_-_6067785_6067865	0.016487	Hoxd1	ENSMUST00000162575.1|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000159084.1|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000161718.1|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000162810.1|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000025713.5|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000113543.2|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000161528.1|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2
mm10_v2_chr8_-_85380964_85380984	0.0161067	Hoxd1	ENSMUST00000122452.1|Mylk3|ENSMUSG00000031698.8|myosin light chain kinase 3
mm10_v2_chr9_-_105395237_105395289	0.0151065	Hoxd1	ENSMUST00000140851.1|Nek11|ENSMUSG00000035032.5|NIMA (never in mitosis gene a)-related expressed kinase 11
mm10_v2_chr15_+_16778101_16778101	0.0147671	Hoxd1	ENSMUST00000026432.6|Cdh9|ENSMUSG00000025370.6|cadherin 9
mm10_v2_chr13_+_120308146_120308146	0.0144697	Hoxd1	ENSMUST00000081558.7|BC147527|ENSMUSG00000094796.1|cDNA sequence BC147527
mm10_v2_chr17_-_57031468_57031538	0.0141142	Hoxd1	ENSMUST00000007814.8|Khsrp|ENSMUSG00000007670.9|KH-type splicing regulatory protein
mm10_v2_chr2_-_69712461_69712606	0.0138537	Hoxd1	ENSMUST00000102706.3|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1 	ENSMUST00000073152.6|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1
mm10_v2_chr17_-_56036546_56036647	0.0138074	Hoxd1	ENSMUST00000003268.9|Sh3gl1|ENSMUSG00000003200.9|SH3-domain GRB2-like 1
mm10_v2_chr6_+_116650674_116650690	0.0121796	Hoxd1	ENSMUST00000067354.5|8430408G22Rik|ENSMUSG00000048489.7|RIKEN cDNA 8430408G22 gene 	ENSMUST00000178241.1|8430408G22Rik|ENSMUSG00000048489.7|RIKEN cDNA 8430408G22 gene
mm10_v2_chrX_-_57338598_57338729	0.0118059	Hoxd1	ENSMUST00000033468.4|Arhgef6|ENSMUSG00000031133.6|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6 	ENSMUST00000114736.1|Arhgef6|ENSMUSG00000031133.6|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6
mm10_v2_chr7_+_79273201_79273270	0.0105282	Hoxd1	ENSMUST00000037315.6|Abhd2|ENSMUSG00000039202.6|abhydrolase domain containing 2
mm10_v2_chr14_+_47298260_47298342	0.0101586	Hoxd1	ENSMUST00000166743.1|Mapk1ip1l|ENSMUSG00000021840.10|mitogen-activated protein kinase 1 interacting protein 1-like
mm10_v2_chr1_+_88306731_88306759	0.00925818	Hoxd1	ENSMUST00000040210.7|Trpm8|ENSMUSG00000036251.10|transient receptor potential cation channel, subfamily M, member 8
mm10_v2_chr15_-_101892916_101892921	0.00873441	Hoxd1	ENSMUST00000100179.1|Krt76|ENSMUSG00000075402.1|keratin 76
mm10_v2_chr2_+_92375306_92375306	0.00781256	Hoxd1	ENSMUST00000028650.8|Pex16|ENSMUSG00000027222.8|peroxisomal biogenesis factor 16
mm10_v2_chr10_-_128176568_128176611	0.00739867	Hoxd1	ENSMUST00000092033.2|Rbms2|ENSMUSG00000040043.9|RNA binding motif, single stranded interacting protein 2
mm10_v2_chr10_+_97647084_97647113	0.00725376	Hoxd1	ENSMUST00000105285.3|Epyc|ENSMUSG00000019936.4|epiphycan
mm10_v2_chr7_-_48843663_48843674	0.00634103	Hoxd1	ENSMUST00000167786.2|Csrp3|ENSMUSG00000030470.8|cysteine and glycine-rich protein 3
mm10_v2_chr12_-_103694657_103694673	0.006002	Hoxd1	ENSMUST00000117053.1|Serpina1f|ENSMUSG00000021081.6|serine (or cysteine) peptidase inhibitor, clade A, member 1F
mm10_v2_chr10_+_90071095_90071117	0.00553139	Hoxd1	ENSMUST00000183109.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr10_+_116143881_116143903	0.0053789	Hoxd1	ENSMUST00000105271.2|Ptprr|ENSMUSG00000020151.10|protein tyrosine phosphatase, receptor type, R
mm10_v2_chrX_+_107255878_107256064	0.00535682	Hoxd1	ENSMUST00000101294.2|Gpr174|ENSMUSG00000073008.5|G protein-coupled receptor 174 	ENSMUST00000118820.1|Gpr174|ENSMUSG00000073008.5|G protein-coupled receptor 174 	ENSMUST00000120971.1|Gpr174|ENSMUSG00000073008.5|G protein-coupled receptor 174
mm10_v2_chr17_-_40242285_40242289	0.00352995	Hoxd1	ENSMUST00000026499.5|Crisp3|ENSMUSG00000025433.7|cysteine-rich secretory protein 3
mm10_v2_chr2_-_164613600_164613630	0.0018592	Hoxd1	ENSMUST00000094351.4|Wfdc8|ENSMUSG00000070533.5|WAP four-disulfide core domain 8 	ENSMUST00000109338.1|Wfdc8|ENSMUSG00000070533.5|WAP four-disulfide core domain 8
mm10_v2_chr15_-_101573883_101573913	0.0016371	Hoxd1	ENSMUST00000042957.5|Krt75|ENSMUSG00000022986.5|keratin 75
mm10_v2_chr2_+_65620829_65620857	5.73795e-05	Hoxd1	ENSMUST00000028377.7|Scn2a1|ENSMUSG00000075318.6|sodium channel, voltage-gated, type II, alpha 1
