mm10_v2_chr15_-_58364148_58364148	0.385078	Hoxd9	ENSMUST00000068515.7|Anxa13|ENSMUSG00000055114.7|annexin A13
mm10_v2_chr1_-_86111970_86111984	0.304859	Hoxd9	ENSMUST00000027431.6|Htr2b|ENSMUSG00000026228.6|5-hydroxytryptamine (serotonin) receptor 2B
mm10_v2_chr13_-_3945349_3945349	0.277564	Hoxd9	ENSMUST00000058610.7|Ucn3|ENSMUSG00000044988.7|urocortin 3
mm10_v2_chr17_-_45474839_45474938	0.257416	Hoxd9	ENSMUST00000024731.8|Spats1|ENSMUSG00000023935.9|spermatogenesis associated, serine-rich 1
mm10_v2_chr9_+_7347374_7347410	0.22161	Hoxd9	ENSMUST00000065079.5|Mmp12|ENSMUSG00000049723.8|matrix metallopeptidase 12 	ENSMUST00000005950.5|Mmp12|ENSMUSG00000049723.8|matrix metallopeptidase 12
mm10_v2_chr9_+_43310763_43310806	0.213061	Hoxd9	ENSMUST00000034511.5|Trim29|ENSMUSG00000032013.5|tripartite motif-containing 29
mm10_v2_chr9_-_96437434_96437434	0.211997	Hoxd9	ENSMUST00000070500.2|BC043934|ENSMUSG00000056418.2|cDNA sequence BC043934
mm10_v2_chr7_+_45621805_45621825	0.206868	Hoxd9	ENSMUST00000033100.4|Izumo1|ENSMUSG00000064158.4|izumo sperm-egg fusion 1
mm10_v2_chr8_+_107119110_107119110	0.19692	Hoxd9	ENSMUST00000046116.1|C630050I24Rik|ENSMUSG00000040399.1|RIKEN cDNA C630050I24 gene
mm10_v2_chr5_-_43235352_43235352	0.18001	Hoxd9	ENSMUST00000140650.2|Gm7854|ENSMUSG00000085720.2|predicted gene 7854
mm10_v2_chr3_+_114030532_114030571	0.17785	Hoxd9	ENSMUST00000123619.1|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1 	ENSMUST00000092155.5|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1
mm10_v2_chr10_-_24101951_24101951	0.175331	Hoxd9	ENSMUST00000170267.1|Taar8c|ENSMUSG00000096204.1|trace amine-associated receptor 8C
mm10_v2_chr11_-_109472611_109472688	0.170906	Hoxd9	ENSMUST00000168740.1|Slc16a6|ENSMUSG00000041920.8|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm10_v2_chr14_+_26894557_26894604	0.170383	Hoxd9	ENSMUST00000090337.4|Asb14|ENSMUSG00000021898.8|ankyrin repeat and SOCS box-containing 14 	ENSMUST00000165929.2|Asb14|ENSMUSG00000021898.8|ankyrin repeat and SOCS box-containing 14
mm10_v2_chr6_-_142473075_142473115	0.169416	Hoxd9	ENSMUST00000032371.7|Gys2|ENSMUSG00000030244.7|glycogen synthase 2
mm10_v2_chr6_+_122553799_122553816	0.160284	Hoxd9	ENSMUST00000043301.7|Aicda|ENSMUSG00000040627.8|activation-induced cytidine deaminase
mm10_v2_chr1_-_155099630_155099636	0.139622	Hoxd9	ENSMUST00000055322.4|Ier5|ENSMUSG00000056708.4|immediate early response 5
mm10_v2_chr7_+_121707189_121707189	0.137716	Hoxd9	ENSMUST00000065310.2|1700069B07Rik|ENSMUSG00000053081.2|RIKEN cDNA 1700069B07 gene
mm10_v2_chr8_+_84949860_84949872	0.135154	Hoxd9	ENSMUST00000121880.1|Rtbdn|ENSMUSG00000048617.10|retbindin
mm10_v2_chr3_-_14778452_14778466	0.135021	Hoxd9	ENSMUST00000094365.4|Car1|ENSMUSG00000027556.9|carbonic anhydrase 1
mm10_v2_chr5_-_92348871_92348889	0.124626	Hoxd9	ENSMUST00000038816.6|Cxcl10|ENSMUSG00000034855.7|chemokine (C-X-C motif) ligand 10 	ENSMUST00000118006.1|Cxcl10|ENSMUSG00000034855.7|chemokine (C-X-C motif) ligand 10
mm10_v2_chr5_-_87092546_87092563	0.124375	Hoxd9	ENSMUST00000132667.1|Ugt2b36|ENSMUSG00000070704.4|UDP glucuronosyltransferase 2 family, polypeptide B36 	ENSMUST00000145617.1|Ugt2b36|ENSMUSG00000070704.4|UDP glucuronosyltransferase 2 family, polypeptide B36 	ENSMUST00000094649.4|Ugt2b36|ENSMUSG00000070704.4|UDP glucuronosyltransferase 2 family, polypeptide B36
mm10_v2_chr16_-_79091078_79091107	0.118605	Hoxd9	ENSMUST00000023566.4|Tmprss15|ENSMUSG00000022857.7|transmembrane protease, serine 15 	ENSMUST00000060402.5|Tmprss15|ENSMUSG00000022857.7|transmembrane protease, serine 15
mm10_v2_chr6_-_66559708_66559708	0.11757	Hoxd9	ENSMUST00000079584.1|Vmn1r32|ENSMUSG00000062905.1|vomeronasal 1 receptor 32
mm10_v2_chr8_-_41016295_41016321	0.117321	Hoxd9	ENSMUST00000131965.1|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr11_-_61720795_61720803	0.114154	Hoxd9	ENSMUST00000051552.4|Slc5a10|ENSMUSG00000042371.6|solute carrier family 5 (sodium/glucose cotransporter), member 10
mm10_v2_chr1_+_167598450_167598480	0.105106	Hoxd9	ENSMUST00000111386.1|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma 	ENSMUST00000111384.1|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chr2_-_140671462_140671476	0.102747	Hoxd9	ENSMUST00000110057.2|Flrt3|ENSMUSG00000051379.6|fibronectin leucine rich transmembrane protein 3
mm10_v2_chr9_-_106096776_106096791	0.10268	Hoxd9	ENSMUST00000121963.1|Col6a4|ENSMUSG00000032572.6|collagen, type VI, alpha 4
mm10_v2_chr1_+_167598384_167598411	0.100467	Hoxd9	ENSMUST00000015987.3|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chrX_-_134111708_134111788	0.0983944	Hoxd9	ENSMUST00000159259.1|Nox1|ENSMUSG00000031257.8|NADPH oxidase 1 	ENSMUST00000113275.3|Nox1|ENSMUSG00000031257.8|NADPH oxidase 1
mm10_v2_chr7_-_14562171_14562171	0.0982589	Hoxd9	ENSMUST00000181796.1|Vmn1r90|ENSMUSG00000097425.1|vomeronasal 1 receptor 90
mm10_v2_chr16_+_44820728_44820728	0.097628	Hoxd9	ENSMUST00000114626.3|Cd200r4|ENSMUSG00000062082.10|CD200 receptor 4
mm10_v2_chr10_+_97647084_97647113	0.0967281	Hoxd9	ENSMUST00000105285.3|Epyc|ENSMUSG00000019936.4|epiphycan
mm10_v2_chr6_-_87533219_87533264	0.0963994	Hoxd9	ENSMUST00000113637.2|Arhgap25|ENSMUSG00000030047.8|Rho GTPase activating protein 25 	ENSMUST00000071024.6|Arhgap25|ENSMUSG00000030047.8|Rho GTPase activating protein 25
mm10_v2_chr17_-_40880525_40880579	0.0958977	Hoxd9	ENSMUST00000068258.2|9130008F23Rik|ENSMUSG00000054951.2|RIKEN cDNA 9130008F23 gene
mm10_v2_chr16_-_23029080_23029106	0.0944898	Hoxd9	ENSMUST00000100046.2|Kng2|ENSMUSG00000060459.7|kininogen 2
mm10_v2_chrX_+_114474312_114474353	0.093518	Hoxd9	ENSMUST00000113371.1|Klhl4|ENSMUSG00000025597.7|kelch-like 4 	ENSMUST00000040504.5|Klhl4|ENSMUSG00000025597.7|kelch-like 4
mm10_v2_chr1_+_40439767_40439788	0.0934857	Hoxd9	ENSMUST00000173514.1|Il1rl1|ENSMUSG00000026069.9|interleukin 1 receptor-like 1
mm10_v2_chrX_-_134751331_134751424	0.0894506	Hoxd9	ENSMUST00000113194.1|Armcx6|ENSMUSG00000050394.8|armadillo repeat containing, X-linked 6 	ENSMUST00000052431.5|Armcx6|ENSMUSG00000050394.8|armadillo repeat containing, X-linked 6
mm10_v2_chr7_+_90380646_90380646	0.0878626	Hoxd9	ENSMUST00000098310.2|Sytl2|ENSMUSG00000030616.8|synaptotagmin-like 2
mm10_v2_chr2_+_14174513_14174546	0.0875129	Hoxd9	ENSMUST00000077517.7|Tmem236|ENSMUSG00000061531.7|transmembrane protein 236
mm10_v2_chr3_-_144849301_144849357	0.0862657	Hoxd9	ENSMUST00000159989.1|Clca4|ENSMUSG00000037033.9|chloride channel calcium activated 4
mm10_v2_chr2_-_121380940_121380947	0.0840253	Hoxd9	ENSMUST00000038389.8|Strc|ENSMUSG00000033498.8|stereocilin
mm10_v2_chr9_+_39613544_39613544	0.0821704	Hoxd9	ENSMUST00000050807.6|Olfr148|ENSMUSG00000048299.6|olfactory receptor 148
mm10_v2_chr4_-_94650092_94650127	0.0816371	Hoxd9	ENSMUST00000107101.1|Lrrc19|ENSMUSG00000049799.7|leucine rich repeat containing 19
mm10_v2_chr17_+_31433054_31433071	0.0809875	Hoxd9	ENSMUST00000136384.1|Pde9a|ENSMUSG00000041119.5|phosphodiesterase 9A
mm10_v2_chr2_-_63184170_63184195	0.0793463	Hoxd9	ENSMUST00000112452.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr5_+_17962621_17962621	0.0779599	Hoxd9	ENSMUST00000030561.7|Gnat3|ENSMUSG00000028777.7|guanine nucleotide binding protein, alpha transducing 3
mm10_v2_chr6_-_36811361_36811361	0.0773891	Hoxd9	ENSMUST00000101534.1|Ptn|ENSMUSG00000029838.8|pleiotrophin
mm10_v2_chr6_-_42597372_42597384	0.0750635	Hoxd9	ENSMUST00000069023.3|Fam115e|ENSMUSG00000018656.5|family with sequence similarity 115, member E
mm10_v2_chr5_-_92253159_92253159	0.0729215	Hoxd9	ENSMUST00000031359.8|Ppef2|ENSMUSG00000029410.8|protein phosphatase, EF hand calcium-binding domain 2
mm10_v2_chr7_-_103827922_103828096	0.0722371	Hoxd9	ENSMUST00000023934.6|Hbb-bs|ENSMUSG00000052305.5|hemoglobin, beta adult s chain 	ENSMUST00000153218.1|Hbb-bs|ENSMUSG00000052305.5|hemoglobin, beta adult s chain
mm10_v2_chr1_-_139781236_139781239	0.0710465	Hoxd9	ENSMUST00000027612.8|Gm4788|ENSMUSG00000070594.4|predicted gene 4788 	ENSMUST00000111989.2|Gm4788|ENSMUSG00000070594.4|predicted gene 4788 	ENSMUST00000111986.2|Gm4788|ENSMUSG00000070594.4|predicted gene 4788
mm10_v2_chr13_+_93304940_93305278	0.0689406	Hoxd9	ENSMUST00000109497.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109498.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000060490.4|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109492.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109496.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109495.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila)
mm10_v2_chr11_+_85171096_85171104	0.0677419	Hoxd9	ENSMUST00000018623.3|1700125H20Rik|ENSMUSG00000018479.6|RIKEN cDNA 1700125H20 gene
mm10_v2_chr18_+_43764317_43764333	0.0672912	Hoxd9	ENSMUST00000043803.6|Scgb3a2|ENSMUSG00000038791.8|secretoglobin, family 3A, member 2
mm10_v2_chr1_-_175491130_175491130	0.0672085	Hoxd9	ENSMUST00000027812.5|Rgs7|ENSMUSG00000026527.8|regulator of G protein signaling 7
mm10_v2_chr8_+_66386292_66386308	0.0637976	Hoxd9	ENSMUST00000039540.5|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1 	ENSMUST00000110253.2|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1
mm10_v2_chr18_+_56588342_56588426	0.0631882	Hoxd9	ENSMUST00000035640.6|1700065I17Rik|ENSMUSG00000032900.8|RIKEN cDNA 1700065I17 gene 	ENSMUST00000127591.1|1700065I17Rik|ENSMUSG00000032900.8|RIKEN cDNA 1700065I17 gene 	ENSMUST00000147775.1|1700065I17Rik|ENSMUSG00000032900.8|RIKEN cDNA 1700065I17 gene
mm10_v2_chr1_-_138175126_138175198	0.0618422	Hoxd9	ENSMUST00000183301.1|Ptprc|ENSMUSG00000026395.10|protein tyrosine phosphatase, receptor type, C
mm10_v2_chr16_+_92292380_92292397	0.0608913	Hoxd9	ENSMUST00000047383.3|Kcne2|ENSMUSG00000039672.6|potassium voltage-gated channel, Isk-related subfamily, gene 2
mm10_v2_chr9_-_21989427_21989456	0.0607249	Hoxd9	ENSMUST00000045726.6|Rgl3|ENSMUSG00000040146.8|ral guanine nucleotide dissociation stimulator-like 3
mm10_v2_chr1_-_138175283_138175311	0.0590869	Hoxd9	ENSMUST00000182755.1|Ptprc|ENSMUSG00000026395.10|protein tyrosine phosphatase, receptor type, C 	ENSMUST00000183262.1|Ptprc|ENSMUSG00000026395.10|protein tyrosine phosphatase, receptor type, C 	ENSMUST00000027645.7|Ptprc|ENSMUSG00000026395.10|protein tyrosine phosphatase, receptor type, C 	ENSMUST00000112036.2|Ptprc|ENSMUSG00000026395.10|protein tyrosine phosphatase, receptor type, C 	ENSMUST00000182283.1|Ptprc|ENSMUSG00000026395.10|protein tyrosine phosphatase, receptor type, C
mm10_v2_chr2_+_125136692_125136769	0.0588184	Hoxd9	ENSMUST00000099452.2|Ctxn2|ENSMUSG00000074872.2|cortexin 2
mm10_v2_chr10_+_130322845_130322856	0.0580863	Hoxd9	ENSMUST00000042586.8|Tespa1|ENSMUSG00000034833.9|thymocyte expressed, positive selection associated 1
mm10_v2_chr3_-_144819494_144819494	0.057621	Hoxd9	ENSMUST00000029929.7|Clca2|ENSMUSG00000028262.9|chloride channel calcium activated 2
mm10_v2_chr2_+_11172080_11172140	0.0575815	Hoxd9	ENSMUST00000114853.1|Prkcq|ENSMUSG00000026778.7|protein kinase C, theta
mm10_v2_chr9_-_39604124_39604403	0.0575673	Hoxd9	ENSMUST00000042485.4|AW551984|ENSMUSG00000038112.9|expressed sequence AW551984 	ENSMUST00000141370.1|AW551984|ENSMUSG00000038112.9|expressed sequence AW551984
mm10_v2_chrX_+_82948861_82948915	0.0569127	Hoxd9	ENSMUST00000114000.1|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy
mm10_v2_chr3_-_104777483_104777547	0.0548627	Hoxd9	ENSMUST00000139783.1|Fam19a3|ENSMUSG00000055865.8|family with sequence similarity 19, member A3
mm10_v2_chr19_+_39113898_39113916	0.0546832	Hoxd9	ENSMUST00000087234.2|Cyp2c66|ENSMUSG00000067229.3|cytochrome P450, family 2, subfamily c, polypeptide 66
mm10_v2_chr11_-_55607733_55607822	0.0537193	Hoxd9	ENSMUST00000108853.1|Glra1|ENSMUSG00000000263.9|glycine receptor, alpha 1 subunit 	ENSMUST00000075603.4|Glra1|ENSMUSG00000000263.9|glycine receptor, alpha 1 subunit
mm10_v2_chr2_-_76870486_76870611	0.053341	Hoxd9	ENSMUST00000138542.1|Ttn|ENSMUSG00000051747.8|titin
mm10_v2_chr2_+_69790968_69790973	0.0528665	Hoxd9	ENSMUST00000180290.1|Phospho2|ENSMUSG00000027088.4|phosphatase, orphan 2
mm10_v2_chr16_-_45693658_45693743	0.0517204	Hoxd9	ENSMUST00000114562.2|Tmprss7|ENSMUSG00000033177.7|transmembrane serine protease 7 	ENSMUST00000036617.7|Tmprss7|ENSMUSG00000033177.7|transmembrane serine protease 7
mm10_v2_chr8_+_107031218_107031229	0.0496876	Hoxd9	ENSMUST00000034388.9|Vps4a|ENSMUSG00000031913.9|vacuolar protein sorting 4a (yeast)
mm10_v2_chr13_-_96435952_96435967	0.0496355	Hoxd9	ENSMUST00000181761.1|Ankdd1b|ENSMUSG00000047117.6|ankyrin repeat and death domain containing 1B
mm10_v2_chr2_-_58052832_58052870	0.0494595	Hoxd9	ENSMUST00000090940.5|Ermn|ENSMUSG00000026830.9|ermin, ERM-like protein
mm10_v2_chr11_-_4440745_4440745	0.0477694	Hoxd9	ENSMUST00000109948.1|Hormad2|ENSMUSG00000020419.5|HORMA domain containing 2
mm10_v2_chr18_-_37644185_37644209	0.0474637	Hoxd9	ENSMUST00000066272.4|Taf7|ENSMUSG00000051316.7|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chrX_+_106583184_106583187	0.045602	Hoxd9	ENSMUST00000101296.2|Gm5127|ENSMUSG00000073010.3|predicted gene 5127 	ENSMUST00000101297.3|Gm5127|ENSMUSG00000073010.3|predicted gene 5127
mm10_v2_chr18_-_78206408_78206440	0.0442633	Hoxd9	ENSMUST00000163367.1|Slc14a2|ENSMUSG00000024552.9|solute carrier family 14 (urea transporter), member 2
mm10_v2_chr19_+_34100943_34100983	0.0437468	Hoxd9	ENSMUST00000025685.6|Lipm|ENSMUSG00000056078.5|lipase, family member M
mm10_v2_chr4_-_36056726_36056726	0.043467	Hoxd9	ENSMUST00000108124.3|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2
mm10_v2_chr18_+_80046854_80046904	0.0426043	Hoxd9	ENSMUST00000070219.7|Pard6g|ENSMUSG00000056214.8|par-6 partitioning defective 6 homolog gamma (C. elegans)
mm10_v2_chr8_-_84249701_84249761	0.0423827	Hoxd9	ENSMUST00000019506.7|D8Ertd738e|ENSMUSG00000019362.7|DNA segment, Chr 8, ERATO Doi 738, expressed
mm10_v2_chr4_+_109235262_109235262	0.0422576	Hoxd9	ENSMUST00000106631.2|Calr4|ENSMUSG00000028558.8|calreticulin 4
mm10_v2_chr14_+_74735641_74735663	0.0422356	Hoxd9	ENSMUST00000177283.1|Esd|ENSMUSG00000021996.10|esterase D/formylglutathione hydrolase
mm10_v2_chr6_-_147243794_147243806	0.0419207	Hoxd9	ENSMUST00000153786.1|Gm15767|ENSMUSG00000086021.1|predicted gene 15767
mm10_v2_chr8_+_71887264_71887264	0.0407448	Hoxd9	ENSMUST00000034259.7|Zfp709|ENSMUSG00000056019.6|zinc finger protein 709
mm10_v2_chr1_-_138175238_138175266	0.0406342	Hoxd9	ENSMUST00000182536.1|Ptprc|ENSMUSG00000026395.10|protein tyrosine phosphatase, receptor type, C
mm10_v2_chr12_+_8012359_8012419	0.0404004	Hoxd9	ENSMUST00000171239.1|Apob|ENSMUSG00000020609.8|apolipoprotein B
mm10_v2_chr11_+_29373618_29373777	0.0397342	Hoxd9	ENSMUST00000040182.6|Ccdc88a|ENSMUSG00000032740.10|coiled coil domain containing 88A 	ENSMUST00000109477.1|Ccdc88a|ENSMUSG00000032740.10|coiled coil domain containing 88A
mm10_v2_chr13_-_100246323_100246323	0.0394803	Hoxd9	ENSMUST00000049789.2|Naip5|ENSMUSG00000071203.6|NLR family, apoptosis inhibitory protein 5
mm10_v2_chr3_-_102964124_102964137	0.0376719	Hoxd9	ENSMUST00000058899.8|Nr1h5|ENSMUSG00000048938.8|nuclear receptor subfamily 1, group H, member 5
mm10_v2_chr2_-_45117349_45117395	0.0372672	Hoxd9	ENSMUST00000176438.2|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr7_-_29906524_29906572	0.0366919	Hoxd9	ENSMUST00000159920.1|Zfp27|ENSMUSG00000062040.8|zinc finger protein 27 	ENSMUST00000162592.1|Zfp27|ENSMUSG00000062040.8|zinc finger protein 27
mm10_v2_chr17_+_17402672_17402771	0.0364261	Hoxd9	ENSMUST00000115576.2|Lix1|ENSMUSG00000047786.12|limb expression 1 homolog (chicken)
mm10_v2_chr6_+_18848571_18848582	0.0361182	Hoxd9	ENSMUST00000056398.8|Naa38|ENSMUSG00000044155.8|N(alpha)-acetyltransferase 38, NatC auxiliary subunit
mm10_v2_chr13_-_105271039_105271039	0.0346162	Hoxd9	ENSMUST00000069686.6|Rnf180|ENSMUSG00000021720.10|ring finger protein 180
mm10_v2_chr14_-_36919314_36919352	0.0345376	Hoxd9	ENSMUST00000182797.1|Ccser2|ENSMUSG00000058690.8|coiled-coil serine rich 2
mm10_v2_chr9_-_78109020_78109067	0.0335151	Hoxd9	ENSMUST00000001402.7|Fbxo9|ENSMUSG00000001366.8|f-box protein 9
mm10_v2_chr1_+_180330470_180330493	0.0334017	Hoxd9	ENSMUST00000070181.6|Itpkb|ENSMUSG00000038855.9|inositol 1,4,5-trisphosphate 3-kinase B
mm10_v2_chr2_-_116064721_116064749	0.0333287	Hoxd9	ENSMUST00000110906.2|Meis2|ENSMUSG00000027210.14|Meis homeobox 2
mm10_v2_chr1_+_88200601_88200631	0.0329402	Hoxd9	ENSMUST00000049289.8|Ugt1a2|ENSMUSG00000090171.1|UDP glucuronosyltransferase 1 family, polypeptide A2
mm10_v2_chr19_+_46689902_46689943	0.0322737	Hoxd9	ENSMUST00000074912.7|2010012O05Rik|ENSMUSG00000062376.7|RIKEN cDNA 2010012O05 gene
mm10_v2_chr5_+_63812447_63812538	0.0312947	Hoxd9	ENSMUST00000081747.3|0610040J01Rik|ENSMUSG00000060512.3|RIKEN cDNA 0610040J01 gene
mm10_v2_chr6_+_30512283_30512288	0.0309936	Hoxd9	ENSMUST00000031798.7|Ssmem1|ENSMUSG00000029784.7|serine-rich single-pass membrane protein 1
mm10_v2_chr3_+_103171655_103171725	0.0302589	Hoxd9	ENSMUST00000005830.8|Bcas2|ENSMUSG00000005687.8|breast carcinoma amplified sequence 2
mm10_v2_chr2_-_63184253_63184292	0.029134	Hoxd9	ENSMUST00000075052.3|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7 	ENSMUST00000112454.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr7_+_30565410_30565432	0.0289275	Hoxd9	ENSMUST00000043850.7|Igflr1|ENSMUSG00000036826.8|IGF-like family receptor 1
mm10_v2_chr2_+_67748212_67748212	0.0278262	Hoxd9	ENSMUST00000180887.1|B3galt1|ENSMUSG00000034780.5|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
mm10_v2_chr11_+_110968016_110968042	0.0276614	Hoxd9	ENSMUST00000106636.1|Kcnj16|ENSMUSG00000051497.9|potassium inwardly-rectifying channel, subfamily J, member 16 	ENSMUST00000180023.1|Kcnj16|ENSMUSG00000051497.9|potassium inwardly-rectifying channel, subfamily J, member 16
mm10_v2_chr1_-_172027269_172027313	0.0266618	Hoxd9	ENSMUST00000027837.6|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila) 	ENSMUST00000111264.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr2_+_91526756_91526763	0.0247702	Hoxd9	ENSMUST00000111338.3|Ckap5|ENSMUSG00000040549.10|cytoskeleton associated protein 5
mm10_v2_chr10_+_75037066_75037100	0.0243883	Hoxd9	ENSMUST00000147802.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family 	ENSMUST00000020391.5|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr5_-_87424201_87424205	0.0240092	Hoxd9	ENSMUST00000072818.5|Ugt2b38|ENSMUSG00000061906.5|UDP glucuronosyltransferase 2 family, polypeptide B38
mm10_v2_chr12_+_59129720_59129755	0.0239941	Hoxd9	ENSMUST00000175912.1|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5 	ENSMUST00000176892.1|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5
mm10_v2_chr1_-_24612700_24612700	0.0230798	Hoxd9	ENSMUST00000088336.1|Gm10222|ENSMUSG00000067736.1|predicted gene 10222
mm10_v2_chr1_-_37536232_37536236	0.0224695	Hoxd9	ENSMUST00000042161.8|Mgat4a|ENSMUSG00000026110.9|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm10_v2_chr5_-_77408034_77408051	0.0216413	Hoxd9	ENSMUST00000163898.1|Igfbp7|ENSMUSG00000036256.7|insulin-like growth factor binding protein 7 	ENSMUST00000046746.6|Igfbp7|ENSMUSG00000036256.7|insulin-like growth factor binding protein 7
mm10_v2_chr13_+_58281183_58281196	0.0208155	Hoxd9	ENSMUST00000180882.1|Gm26555|ENSMUSG00000097399.1|predicted gene, 26555 	ENSMUST00000180452.1|Gm26555|ENSMUSG00000097399.1|predicted gene, 26555
mm10_v2_chr1_+_88211956_88211985	0.0206437	Hoxd9	ENSMUST00000073049.6|Ugt1a1|ENSMUSG00000089960.1|UDP glucuronosyltransferase 1 family, polypeptide A1
mm10_v2_chr11_+_49280150_49280150	0.0205144	Hoxd9	ENSMUST00000078932.1|Olfr1393|ENSMUSG00000059864.1|olfactory receptor 1393
mm10_v2_chr1_+_194619815_194619833	0.0197145	Hoxd9	ENSMUST00000027952.5|Plxna2|ENSMUSG00000026640.6|plexin A2
mm10_v2_chr2_-_37647199_37647285	0.0188977	Hoxd9	ENSMUST00000028279.3|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr3_+_32436376_32436376	0.0186282	Hoxd9	ENSMUST00000108242.1|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr8_-_68121527_68121637	0.0182652	Hoxd9	ENSMUST00000178529.1|Gm21807|ENSMUSG00000095306.1|predicted gene, 21807
mm10_v2_chr12_+_59129757_59129818	0.0181829	Hoxd9	ENSMUST00000069430.8|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5 	ENSMUST00000177370.1|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5
mm10_v2_chr16_+_4741543_4741592	0.0176204	Hoxd9	ENSMUST00000120232.1|Hmox2|ENSMUSG00000004070.9|heme oxygenase (decycling) 2
mm10_v2_chr3_-_65958236_65958252	0.0171461	Hoxd9	ENSMUST00000029416.7|Ccnl1|ENSMUSG00000027829.9|cyclin L1
mm10_v2_chr1_-_128328311_128328326	0.0167542	Hoxd9	ENSMUST00000073490.6|Lct|ENSMUSG00000026354.8|lactase
mm10_v2_chr7_+_100176663_100176680	0.0158761	Hoxd9	ENSMUST00000178946.1|Kcne3|ENSMUSG00000035165.7|potassium voltage-gated channel, Isk-related subfamily, gene 3
mm10_v2_chrX_+_153126897_153126897	0.0154373	Hoxd9	ENSMUST00000163801.1|Foxr2|ENSMUSG00000071665.4|forkhead box R2
mm10_v2_chr3_+_35754121_35754135	0.0150962	Hoxd9	ENSMUST00000108186.1|Atp11b|ENSMUSG00000037400.10|ATPase, class VI, type 11B 	ENSMUST00000029257.8|Atp11b|ENSMUSG00000037400.10|ATPase, class VI, type 11B
mm10_v2_chr14_-_121965128_121965193	0.014332	Hoxd9	ENSMUST00000049872.7|Gpr183|ENSMUSG00000051212.7|G protein-coupled receptor 183
mm10_v2_chr16_-_65562686_65562769	0.0140396	Hoxd9	ENSMUST00000004965.6|Chmp2b|ENSMUSG00000004843.6|charged multivesicular body protein 2B
mm10_v2_chr4_+_136143497_136143497	0.0135649	Hoxd9	ENSMUST00000008016.2|Id3|ENSMUSG00000007872.3|inhibitor of DNA binding 3
mm10_v2_chr6_+_145934113_145934136	0.0133792	Hoxd9	ENSMUST00000032383.7|Sspn|ENSMUSG00000030255.7|sarcospan
mm10_v2_chr3_-_66296807_66296837	0.0115302	Hoxd9	ENSMUST00000029419.7|Veph1|ENSMUSG00000027831.9|ventricular zone expressed PH domain-containing 1
mm10_v2_chr2_-_172454742_172454742	0.0111722	Hoxd9	ENSMUST00000161334.1|Gcnt7|ENSMUSG00000074569.4|glucosaminyl (N-acetyl) transferase family member 7
mm10_v2_chr17_+_47649621_47649621	0.0110686	Hoxd9	ENSMUST00000145314.1|Usp49|ENSMUSG00000090115.1|ubiquitin specific peptidase 49
mm10_v2_chr5_-_87254804_87254804	0.00956473	Hoxd9	ENSMUST00000075858.3|Ugt2b37|ENSMUSG00000057425.3|UDP glucuronosyltransferase 2 family, polypeptide B37
mm10_v2_chr6_-_40951826_40951826	0.00908249	Hoxd9	ENSMUST00000073642.5|Gm4744|ENSMUSG00000063252.5|predicted gene 4744
mm10_v2_chr12_+_77238093_77238122	0.00862393	Hoxd9	ENSMUST00000177595.1|Fut8|ENSMUSG00000021065.9|fucosyltransferase 8 	ENSMUST00000171770.2|Fut8|ENSMUSG00000021065.9|fucosyltransferase 8
mm10_v2_chr8_-_54724474_54724504	0.00845874	Hoxd9	ENSMUST00000175915.1|Wdr17|ENSMUSG00000039375.10|WD repeat domain 17
mm10_v2_chr1_-_180330550_180330550	0.00815478	Hoxd9	ENSMUST00000050581.3|Gm5069|ENSMUSG00000055676.3|predicted pseudogene 5069
mm10_v2_chr2_+_30952955_30953016	0.00733621	Hoxd9	ENSMUST00000028199.5|Tor1b|ENSMUSG00000026848.8|torsin family 1, member B
mm10_v2_chr5_+_136953246_136953406	0.00607804	Hoxd9	ENSMUST00000111094.1|Fis1|ENSMUSG00000019054.7|fission 1 (mitochondrial outer membrane) homolog (yeast) 	ENSMUST00000111097.1|Fis1|ENSMUSG00000019054.7|fission 1 (mitochondrial outer membrane) homolog (yeast)
mm10_v2_chrX_+_85048309_85048413	0.00461331	Hoxd9	ENSMUST00000113991.1|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy 	ENSMUST00000113992.2|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy
mm10_v2_chr5_-_100373484_100373527	0.00371121	Hoxd9	ENSMUST00000182433.1|Sec31a|ENSMUSG00000035325.10|Sec31 homolog A (S. cerevisiae)
mm10_v2_chr5_-_66514815_66514837	0.00315824	Hoxd9	ENSMUST00000161879.1|Apbb2|ENSMUSG00000029207.10|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENSMUST00000159357.1|Apbb2|ENSMUSG00000029207.10|amyloid beta (A4) precursor protein-binding, family B, member 2
mm10_v2_chr12_+_38783503_38783527	0.00194457	Hoxd9	ENSMUST00000159334.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr17_+_75435886_75435937	0.00128806	Hoxd9	ENSMUST00000164192.1|Rasgrp3|ENSMUSG00000071042.5|RAS, guanyl releasing protein 3
