mm10_v2_chr15_-_34356421_34356421	1.1069	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000179647.1|9430069I07Rik|ENSMUSG00000094447.1|RIKEN cDNA 9430069I07 gene
mm10_v2_chr10_+_73821857_73821883	1.02302	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000177128.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000064562.7|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000129404.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000105426.3|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000131321.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000126920.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000147189.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000105424.3|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000092420.6|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000105429.3|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000131724.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000152655.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000151116.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000155701.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000152819.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000125517.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000124046.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000149977.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000146682.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000177107.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15
mm10_v2_chr17_+_69439326_69439326	0.790875	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000169935.1|A330050F15Rik|ENSMUSG00000091636.1|RIKEN cDNA A330050F15 gene
mm10_v2_chr1_-_79440039_79440090	0.661041	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000049972.4|Scg2|ENSMUSG00000050711.6|secretogranin II
mm10_v2_chr10_+_73821937_73821951	0.610133	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000134009.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000125006.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000177420.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15
mm10_v2_chr14_-_110755100_110755152	0.591436	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000078386.2|Slitrk6|ENSMUSG00000045871.4|SLIT and NTRK-like family, member 6
mm10_v2_chr6_-_116716888_116716923	0.559668	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000056623.6|Tmem72|ENSMUSG00000048108.7|transmembrane protein 72
mm10_v2_chr7_+_126950687_126950729	0.550048	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106333.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr7_+_126950518_126950584	0.549825	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106335.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2 	ENSMUST00000146017.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr6_-_147264124_147264167	0.541744	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000052296.6|Pthlh|ENSMUSG00000048776.6|parathyroid hormone-like peptide
mm10_v2_chr14_-_118052235_118052253	0.541726	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022725.2|Dct|ENSMUSG00000022129.3|dopachrome tautomerase
mm10_v2_chr13_-_102905740_102905814	0.538302	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000167462.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr13_-_102906046_102906111	0.538262	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000171791.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr11_-_100762928_100762936	0.515854	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107360.2|Hcrt|ENSMUSG00000045471.4|hypocretin 	ENSMUST00000055083.3|Hcrt|ENSMUSG00000045471.4|hypocretin
mm10_v2_chr17_-_90088343_90088373	0.460097	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000173917.1|Nrxn1|ENSMUSG00000024109.12|neurexin I
mm10_v2_chr7_-_66427469_66427517	0.457958	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000015278.7|Aldh1a3|ENSMUSG00000015134.8|aldehyde dehydrogenase family 1, subfamily A3
mm10_v2_chr1_+_110099295_110099295	0.456402	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000134301.1|Cdh7|ENSMUSG00000026312.11|cadherin 7, type 2
mm10_v2_chr7_+_126950837_126950966	0.450223	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106332.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr10_+_39612934_39612934	0.445164	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000019987.6|Traf3ip2|ENSMUSG00000019842.6|TRAF3 interacting protein 2
mm10_v2_chr3_+_159839729_159839745	0.434455	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000068952.5|Wls|ENSMUSG00000028173.6|wntless homolog (Drosophila)
mm10_v2_chr2_+_69219971_69220005	0.421976	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000005364.5|G6pc2|ENSMUSG00000005232.5|glucose-6-phosphatase, catalytic, 2 	ENSMUST00000112317.2|G6pc2|ENSMUSG00000005232.5|glucose-6-phosphatase, catalytic, 2
mm10_v2_chr19_+_26749726_26749877	0.392265	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000175842.1|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm10_v2_chr10_-_53647080_53647080	0.38389	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000169866.1|Fam184a|ENSMUSG00000019856.7|family with sequence similarity 184, member A
mm10_v2_chr8_+_54954728_54954820	0.379405	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000033915.7|Gpm6a|ENSMUSG00000031517.7|glycoprotein m6a
mm10_v2_chr6_-_50654438_50654448	0.328809	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000031853.7|Npvf|ENSMUSG00000029831.7|neuropeptide VF precursor
mm10_v2_chr2_-_103283760_103283802	0.328738	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000111174.1|Ehf|ENSMUSG00000012350.9|ets homologous factor
mm10_v2_chr15_-_101892916_101892921	0.320455	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100179.1|Krt76|ENSMUSG00000075402.1|keratin 76
mm10_v2_chr5_-_62765618_62765656	0.315865	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000159470.1|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr17_+_45734506_45734630	0.304207	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000180558.1|F630040K05Rik|ENSMUSG00000097727.1|RIKEN cDNA F630040K05 gene
mm10_v2_chr3_-_141982224_141982264	0.293456	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029948.8|Bmpr1b|ENSMUSG00000052430.9|bone morphogenetic protein receptor, type 1B
mm10_v2_chr9_+_118478344_118478451	0.280759	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035020.8|Eomes|ENSMUSG00000032446.8|eomesodermin homolog (Xenopus laevis)
mm10_v2_chr6_+_29859662_29859685	0.255774	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000128927.2|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr14_+_79515618_79515694	0.250866	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110835.1|Elf1|ENSMUSG00000036461.9|E74-like factor 1
mm10_v2_chr5_-_123141067_123141094	0.247674	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000162697.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526 	ENSMUST00000160321.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526 	ENSMUST00000159637.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526
mm10_v2_chr6_+_29859686_29859710	0.24028	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000134438.1|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr3_+_108093109_108093138	0.239301	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000151326.1|Gnat2|ENSMUSG00000009108.9|guanine nucleotide binding protein, alpha transducing 2
mm10_v2_chr14_+_27000362_27000507	0.235083	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035433.8|Hesx1|ENSMUSG00000040726.8|homeobox gene expressed in ES cells
mm10_v2_chr1_-_144545320_144545320	0.233869	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000184189.1|Rgs21|ENSMUSG00000098509.1|regulator of G-protein signalling 21
mm10_v2_chr11_-_99322943_99322957	0.226092	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000038004.2|Krt25|ENSMUSG00000035831.2|keratin 25
mm10_v2_chr12_+_109545390_109545443	0.224008	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000146701.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3
mm10_v2_chr3_+_108092789_108092880	0.219933	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000058669.8|Gnat2|ENSMUSG00000009108.9|guanine nucleotide binding protein, alpha transducing 2 	ENSMUST00000145101.1|Gnat2|ENSMUSG00000009108.9|guanine nucleotide binding protein, alpha transducing 2
mm10_v2_chr11_-_99244058_99244136	0.216223	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000103132.3|Krt222|ENSMUSG00000035849.8|keratin 222 	ENSMUST00000038214.6|Krt222|ENSMUSG00000035849.8|keratin 222
mm10_v2_chr13_+_89540636_89540678	0.203549	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022108.7|Hapln1|ENSMUSG00000021613.8|hyaluronan and proteoglycan link protein 1
mm10_v2_chr15_+_25773985_25774042	0.20252	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000125667.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr6_+_115931922_115931937	0.19589	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000032471.6|Rho|ENSMUSG00000030324.6|rhodopsin
mm10_v2_chr6_+_29859374_29859381	0.188066	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115238.3|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr13_-_113663670_113663681	0.185775	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000054650.4|Hspb3|ENSMUSG00000051456.4|heat shock protein 3
mm10_v2_chr17_+_17402672_17402771	0.185619	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115576.2|Lix1|ENSMUSG00000047786.12|limb expression 1 homolog (chicken)
mm10_v2_chr12_-_91849081_91849157	0.167349	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000167466.1|Sel1l|ENSMUSG00000020964.8|sel-1 suppressor of lin-12-like (C. elegans) 	ENSMUST00000021347.5|Sel1l|ENSMUSG00000020964.8|sel-1 suppressor of lin-12-like (C. elegans) 	ENSMUST00000178462.1|Sel1l|ENSMUSG00000020964.8|sel-1 suppressor of lin-12-like (C. elegans)
mm10_v2_chr4_+_19280850_19280907	0.162649	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000102999.1|Cngb3|ENSMUSG00000056494.7|cyclic nucleotide gated channel beta 3
mm10_v2_chr2_+_125136692_125136769	0.158669	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000099452.2|Ctxn2|ENSMUSG00000074872.2|cortexin 2
mm10_v2_chr15_-_101573883_101573913	0.157658	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000042957.5|Krt75|ENSMUSG00000022986.5|keratin 75
mm10_v2_chr12_-_83487708_83487729	0.154645	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000177959.1|Dpf3|ENSMUSG00000021221.9|D4, zinc and double PHD fingers, family 3 	ENSMUST00000178756.1|Dpf3|ENSMUSG00000021221.9|D4, zinc and double PHD fingers, family 3
mm10_v2_chr13_-_18382041_18382041	0.15237	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000139064.2|Pou6f2|ENSMUSG00000009734.11|POU domain, class 6, transcription factor 2 	ENSMUST00000175703.2|Pou6f2|ENSMUSG00000009734.11|POU domain, class 6, transcription factor 2
mm10_v2_chr3_+_96268654_96268683	0.140799	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000098843.2|Hist2h3b|ENSMUSG00000074403.2|histone cluster 2, H3b
mm10_v2_chr12_+_111814170_111814245	0.140084	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000021714.7|Zfyve21|ENSMUSG00000021286.7|zinc finger, FYVE domain containing 21
mm10_v2_chr9_-_40346290_40346337	0.129542	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000121357.1|Gramd1b|ENSMUSG00000040111.8|GRAM domain containing 1B
mm10_v2_chr14_+_33941021_33941052	0.120553	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100720.1|Gdf2|ENSMUSG00000072625.1|growth differentiation factor 2
mm10_v2_chr6_-_126645784_126645801	0.117915	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000055168.3|Kcna1|ENSMUSG00000047976.3|potassium voltage-gated channel, shaker-related subfamily, member 1
mm10_v2_chr2_-_116067391_116067444	0.117106	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr9_+_45370185_45370208	0.115131	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000085939.6|Fxyd6|ENSMUSG00000066705.6|FXYD domain-containing ion transport regulator 6
mm10_v2_chr18_-_66022580_66022600	0.114419	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000143990.1|Lman1|ENSMUSG00000041891.9|lectin, mannose-binding, 1
mm10_v2_chr18_+_57468478_57468541	0.113	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000091892.2|Ctxn3|ENSMUSG00000069372.2|cortexin 3
mm10_v2_chr12_+_21417872_21417911	0.112637	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000180671.1|Gm4419|ENSMUSG00000097055.1|predicted gene 4419
mm10_v2_chr2_+_127909058_127909058	0.111337	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110344.1|Acoxl|ENSMUSG00000027380.4|acyl-Coenzyme A oxidase-like
mm10_v2_chr13_+_23574381_23574449	0.108629	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000090776.4|Hist1h2ad|ENSMUSG00000071478.4|histone cluster 1, H2ad
mm10_v2_chr9_-_61372187_61372211	0.106981	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000098658.2|Gm10655|ENSMUSG00000074256.2|predicted gene 10655
mm10_v2_chr14_-_108914237_108914257	0.104172	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100322.2|Slitrk1|ENSMUSG00000075478.2|SLIT and NTRK-like family, member 1
mm10_v2_chr16_-_74411292_74411430	0.103531	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000117200.1|Robo2|ENSMUSG00000052516.11|roundabout homolog 2 (Drosophila)
mm10_v2_chr7_-_115824699_115824752	0.102579	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000169129.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr4_-_35845204_35845204	0.100042	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000164772.1|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2 	ENSMUST00000065173.2|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2
mm10_v2_chr13_+_42680565_42680623	0.098809	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000128646.1|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1
mm10_v2_chr11_+_60537978_60538074	0.0987425	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000044250.3|Alkbh5|ENSMUSG00000042650.3|alkB, alkylation repair homolog 5 (E. coli)
mm10_v2_chr11_-_97700327_97700497	0.0980719	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000018681.7|Pcgf2|ENSMUSG00000018537.10|polycomb group ring finger 2
mm10_v2_chr14_-_68533689_68533757	0.0969403	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022640.7|Adam7|ENSMUSG00000022056.8|a disintegrin and metallopeptidase domain 7
mm10_v2_chr3_-_59220150_59220259	0.0968072	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000170388.1|P2ry12|ENSMUSG00000036353.7|purinergic receptor P2Y, G-protein coupled 12
mm10_v2_chr8_-_45382198_45382291	0.0961911	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000093526.6|Fam149a|ENSMUSG00000070044.9|family with sequence similarity 149, member A
mm10_v2_chr6_-_115592571_115592599	0.0914505	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112957.1|2510049J12Rik|ENSMUSG00000068011.4|RIKEN cDNA 2510049J12 gene
mm10_v2_chr9_-_40962333_40962333	0.0912684	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000160120.1|4931429I11Rik|ENSMUSG00000032023.7|RIKEN cDNA 4931429I11 gene
mm10_v2_chr17_+_46161021_46161072	0.0859729	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000024748.7|Gtpbp2|ENSMUSG00000023952.7|GTP binding protein 2 	ENSMUST00000172170.1|Gtpbp2|ENSMUSG00000023952.7|GTP binding protein 2
mm10_v2_chr3_+_151437887_151437914	0.0847432	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000046977.7|Eltd1|ENSMUSG00000039167.7|EGF, latrophilin seven transmembrane domain containing 1
mm10_v2_chr4_-_58499398_58499409	0.0822544	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107570.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr4_-_14621805_14621819	0.0808583	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000042221.7|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chrX_-_143933204_143933311	0.0798027	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr7_+_30763750_30763765	0.0788335	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000165887.1|Dmkn|ENSMUSG00000060962.6|dermokine 	ENSMUST00000085691.4|Dmkn|ENSMUSG00000060962.6|dermokine 	ENSMUST00000085688.4|Dmkn|ENSMUSG00000060962.6|dermokine 	ENSMUST00000054427.6|Dmkn|ENSMUSG00000060962.6|dermokine
mm10_v2_chr3_+_66219909_66219927	0.0780555	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029421.5|Ptx3|ENSMUSG00000027832.5|pentraxin related gene
mm10_v2_chr6_-_136171722_136171849	0.0772408	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000053880.6|Grin2b|ENSMUSG00000030209.8|glutamate receptor, ionotropic, NMDA2B (epsilon 2)
mm10_v2_chr10_-_80421847_80421876	0.0770318	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000156244.1|Tcf3|ENSMUSG00000020167.8|transcription factor 3
mm10_v2_chrX_-_143933089_143933142	0.0763829	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000087313.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr12_+_52699297_52699411	0.0762559	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chr15_+_101473472_101473478	0.075481	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000088049.3|Krt86|ENSMUSG00000067614.4|keratin 86
mm10_v2_chr15_-_67113909_67113992	0.0738453	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000092640.5|St3gal1|ENSMUSG00000013846.9|ST3 beta-galactoside alpha-2,3-sialyltransferase 1
mm10_v2_chr13_-_23574196_23574229	0.0732258	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000105106.1|Hist1h2bf|ENSMUSG00000069268.4|histone cluster 1, H2bf
mm10_v2_chr2_+_22622183_22622205	0.0706422	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000028123.3|Gad2|ENSMUSG00000026787.3|glutamic acid decarboxylase 2
mm10_v2_chr9_+_43310763_43310806	0.0697953	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034511.5|Trim29|ENSMUSG00000032013.5|tripartite motif-containing 29
mm10_v2_chr6_-_52226165_52226196	0.0681947	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114425.2|Hoxa9|ENSMUSG00000038227.9|homeobox A9
mm10_v2_chr6_+_37870786_37870882	0.0676024	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000120428.1|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24 	ENSMUST00000031859.7|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24
mm10_v2_chr9_+_61372359_61372383	0.0642719	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000178113.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000159386.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl)
mm10_v2_chr9_-_71163224_71163293	0.063993	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000074465.2|Aqp9|ENSMUSG00000032204.7|aquaporin 9
mm10_v2_chr18_+_37819543_37819570	0.0627991	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000055935.5|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr8_-_3625025_3625049	0.0620642	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000133459.1|Pcp2|ENSMUSG00000004630.12|Purkinje cell protein 2 (L7)
mm10_v2_chr18_+_56432116_56432163	0.0617735	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000070166.5|Gramd3|ENSMUSG00000001700.9|GRAM domain containing 3
mm10_v2_chr3_-_37232565_37232637	0.0611279	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000161015.1|Il21|ENSMUSG00000027718.2|interleukin 21 	ENSMUST00000029273.1|Il21|ENSMUSG00000027718.2|interleukin 21
mm10_v2_chr8_-_3624989_3625014	0.0605167	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000142431.1|Pcp2|ENSMUSG00000004630.12|Purkinje cell protein 2 (L7)
mm10_v2_chr11_+_66911981_66912003	0.0601649	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000123434.2|Pirt|ENSMUSG00000048070.4|phosphoinositide-interacting regulator of transient receptor potential channels
mm10_v2_chr18_+_84851338_84851429	0.0597996	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000160180.1|Cyb5|ENSMUSG00000024646.7|cytochrome b-5
mm10_v2_chr12_-_111813834_111813858	0.0594452	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000021715.5|Xrcc3|ENSMUSG00000021287.6|X-ray repair complementing defective repair in Chinese hamster cells 3
mm10_v2_chr3_+_125404292_125404340	0.0587762	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000144344.1|Ndst4|ENSMUSG00000027971.10|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4
mm10_v2_chr5_-_5266038_5266292	0.0579524	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115451.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000115452.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000131392.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14
mm10_v2_chr7_-_81493725_81493783	0.0577447	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000119121.1|Ap3b2|ENSMUSG00000062444.8|adaptor-related protein complex 3, beta 2 subunit
mm10_v2_chr5_-_137684665_137684729	0.0568891	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100544.4|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000031736.9|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000151839.1|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2
mm10_v2_chr18_+_82914632_82914664	0.0565524	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000071233.6|Zfp516|ENSMUSG00000058881.6|zinc finger protein 516
mm10_v2_chr9_+_118478182_118478212	0.0548463	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000111763.1|Eomes|ENSMUSG00000032446.8|eomesodermin homolog (Xenopus laevis)
mm10_v2_chr5_+_34999111_34999184	0.0544913	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114283.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr8_+_25720054_25720099	0.053667	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000068916.8|Ppapdc1b|ENSMUSG00000031570.10|phosphatidic acid phosphatase type 2 domain containing 1B 	ENSMUST00000139836.1|Ppapdc1b|ENSMUSG00000031570.10|phosphatidic acid phosphatase type 2 domain containing 1B
mm10_v2_chr13_+_75707484_75707510	0.0524156	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000001583.6|Ell2|ENSMUSG00000001542.6|elongation factor RNA polymerase II 2
mm10_v2_chrX_+_160768013_160768122	0.0518904	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000033650.7|Rs1|ENSMUSG00000031293.7|retinoschisis (X-linked, juvenile) 1 (human)
mm10_v2_chr2_-_168767029_168767104	0.0514511	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000075044.3|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr2_+_20737306_20737321	0.0510693	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr5_-_122989260_122989306	0.0503733	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000118027.1|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr8_-_84846860_84846934	0.0497446	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000003912.6|Calr|ENSMUSG00000003814.8|calreticulin
mm10_v2_chr4_+_97777780_97777834	0.0496409	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107062.2|Nfia|ENSMUSG00000028565.12|nuclear factor I/A 	ENSMUST00000052018.5|Nfia|ENSMUSG00000028565.12|nuclear factor I/A 	ENSMUST00000107057.1|Nfia|ENSMUSG00000028565.12|nuclear factor I/A
mm10_v2_chr2_+_106693185_106693278	0.0494359	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000111063.1|Mpped2|ENSMUSG00000016386.9|metallophosphoesterase domain containing 2
mm10_v2_chr5_-_77115145_77115156	0.0472006	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000081964.5|Hopx|ENSMUSG00000059325.8|HOP homeobox
mm10_v2_chr4_+_5724304_5724357	0.0443427	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000108380.1|Fam110b|ENSMUSG00000049119.8|family with sequence similarity 110, member B
mm10_v2_chr15_-_11037968_11037968	0.0441183	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000058007.5|Rxfp3|ENSMUSG00000060735.3|relaxin family peptide receptor 3
mm10_v2_chr4_+_150853919_150854050	0.0433565	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000073600.2|Errfi1|ENSMUSG00000028967.4|ERBB receptor feedback inhibitor 1
mm10_v2_chr5_-_122989086_122989111	0.0427697	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000046073.9|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr8_-_3625541_3625548	0.0426333	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000136105.1|Pcp2|ENSMUSG00000004630.12|Purkinje cell protein 2 (L7)
mm10_v2_chr2_-_168767136_168767201	0.0418843	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029061.5|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila) 	ENSMUST00000103074.1|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr2_+_70474923_70474923	0.0411732	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100043.2|Sp5|ENSMUSG00000075304.2|trans-acting transcription factor 5
mm10_v2_chr8_+_45658731_45658804	0.0411065	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000143820.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000132139.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr6_-_138421379_138421452	0.0408199	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000163065.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3
mm10_v2_chr4_-_126968124_126968154	0.0406884	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106108.2|Zmym4|ENSMUSG00000042446.10|zinc finger, MYM-type 4
mm10_v2_chr12_-_21417591_21417637	0.0404592	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000135088.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr10_+_102158858_102158889	0.0396781	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000138522.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENSMUST00000163753.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENSMUST00000138016.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
mm10_v2_chr17_-_23835743_23835743	0.0394958	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000059906.6|Prss33|ENSMUSG00000049620.8|protease, serine, 33
mm10_v2_chr10_+_127898515_127898532	0.0391598	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000047134.7|Sdr9c7|ENSMUSG00000040127.7|4short chain dehydrogenase/reductase family 9C, member 7
mm10_v2_chr15_-_13173607_13173644	0.0388147	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000036439.4|Cdh6|ENSMUSG00000039385.4|cadherin 6
mm10_v2_chr17_+_46910452_46910464	0.0378799	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000024773.5|Prph2|ENSMUSG00000023978.5|peripherin 2
mm10_v2_chr12_-_21417526_21417588	0.0378686	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000049531.9|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide 	ENSMUST00000155480.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr8_-_3625274_3625288	0.0377196	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000004749.6|Pcp2|ENSMUSG00000004630.12|Purkinje cell protein 2 (L7)
mm10_v2_chr8_+_45658666_45658728	0.0374185	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000134675.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000139869.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000126067.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr12_+_74297474_74297474	0.0373577	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000072100.3|Dbpht2|ENSMUSG00000029878.5|DNA binding protein with his-thr domain
mm10_v2_chr17_-_35697971_35698001	0.0362449	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000146472.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr2_-_160313616_160313616	0.0360593	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000109475.2|Gm826|ENSMUSG00000074623.4|predicted gene 826
mm10_v2_chr5_-_137531204_137531297	0.0354443	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000150063.2|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr4_+_114821722_114821722	0.0349431	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000137570.1|Gm12830|ENSMUSG00000055198.3|predicted gene 12830
mm10_v2_chr12_+_55089202_55089202	0.03421	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000021407.10|Srp54a|ENSMUSG00000073079.5|signal recognition particle 54A
mm10_v2_chr1_+_172555932_172555942	0.0342062	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000061835.3|Vsig8|ENSMUSG00000049598.3|V-set and immunoglobulin domain containing 8
mm10_v2_chr9_+_102506072_102506138	0.0335526	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000039390.4|Ky|ENSMUSG00000035606.7|kyphoscoliosis peptidase
mm10_v2_chr18_+_9707639_9707661	0.0332645	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000040069.8|Colec12|ENSMUSG00000036103.8|collectin sub-family member 12
mm10_v2_chr10_+_127421124_127421203	0.0330142	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000170336.1|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chr12_-_27160498_27160633	0.0325544	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000182592.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866
mm10_v2_chr2_+_132847719_132847743	0.0322126	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000124836.1|Crls1|ENSMUSG00000027357.10|cardiolipin synthase 1 	ENSMUST00000154160.1|Crls1|ENSMUSG00000027357.10|cardiolipin synthase 1
mm10_v2_chr6_-_138079916_138079916	0.0317952	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000171804.1|Slc15a5|ENSMUSG00000044378.6|solute carrier family 15, member 5
mm10_v2_chr4_+_21848039_21848077	0.0314829	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000098238.2|Sfrs18|ENSMUSG00000028248.9|serine/arginine-rich splicing factor 18 	ENSMUST00000108229.1|Sfrs18|ENSMUSG00000028248.9|serine/arginine-rich splicing factor 18
mm10_v2_chr5_-_122988533_122988705	0.0310947	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000086200.4|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B 	ENSMUST00000156474.1|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr10_-_86011833_86011896	0.0308964	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000105304.1|Bpifc|ENSMUSG00000050108.6|BPI fold containing family C 	ENSMUST00000061699.5|Bpifc|ENSMUSG00000050108.6|BPI fold containing family C
mm10_v2_chr10_+_102159000_102159079	0.0308604	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020039.6|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
mm10_v2_chr8_-_62123106_62123123	0.0300815	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034052.6|Anxa10|ENSMUSG00000031635.7|annexin A10 	ENSMUST00000034054.7|Anxa10|ENSMUSG00000031635.7|annexin A10
mm10_v2_chr11_+_67200052_67200111	0.0298931	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000124516.1|Myh1|ENSMUSG00000056328.8|myosin, heavy polypeptide 1, skeletal muscle, adult 	ENSMUST00000018637.8|Myh1|ENSMUSG00000056328.8|myosin, heavy polypeptide 1, skeletal muscle, adult
mm10_v2_chr1_-_126738167_126738230	0.0297802	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000160693.1|Nckap5|ENSMUSG00000049690.9|NCK-associated protein 5
mm10_v2_chr4_-_155056784_155056827	0.0287572	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000131173.2|Plch2|ENSMUSG00000029055.11|phospholipase C, eta 2
mm10_v2_chr8_+_107031218_107031229	0.0274876	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034388.9|Vps4a|ENSMUSG00000031913.9|vacuolar protein sorting 4a (yeast)
mm10_v2_chr2_-_69712461_69712606	0.0269378	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000102706.3|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1 	ENSMUST00000073152.6|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1
mm10_v2_chr17_-_71752867_71752891	0.0264267	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057405.7|BC027072|ENSMUSG00000044375.7|cDNA sequence BC027072
mm10_v2_chr4_+_80834123_80834230	0.0260147	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000133655.1|Tyrp1|ENSMUSG00000005994.8|tyrosinase-related protein 1 	ENSMUST00000006151.6|Tyrp1|ENSMUSG00000005994.8|tyrosinase-related protein 1
mm10_v2_chr7_-_5014645_5014697	0.0257451	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000165320.1|Fiz1|ENSMUSG00000061374.7|Flt3 interacting zinc finger protein 1
mm10_v2_chrX_-_75416533_75416555	0.0255842	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000033542.4|Mtcp1|ENSMUSG00000031200.10|mature T cell proliferation 1
mm10_v2_chr17_-_31198958_31198976	0.0252409	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114549.2|Tmprss3|ENSMUSG00000024034.6|transmembrane protease, serine 3
mm10_v2_chr12_-_21417356_21417436	0.0249153	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000103002.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr8_+_83666827_83666882	0.0247233	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000019608.5|Ptger1|ENSMUSG00000019464.5|prostaglandin E receptor 1 (subtype EP1)
mm10_v2_chr15_-_101763504_101763566	0.0246643	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000088018.3|Krt74|ENSMUSG00000067596.3|keratin 74
mm10_v2_chr3_+_125404072_125404131	0.0246094	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000173932.1|Ndst4|ENSMUSG00000027971.10|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4
mm10_v2_chr10_+_127420867_127420916	0.0245551	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000064793.6|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chr11_+_67798269_67798288	0.0245381	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000168612.1|Dhrs7c|ENSMUSG00000033044.6|dehydrogenase/reductase (SDR family) member 7C 	ENSMUST00000040574.4|Dhrs7c|ENSMUSG00000033044.6|dehydrogenase/reductase (SDR family) member 7C
mm10_v2_chrX_+_56454871_56454887	0.0238742	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000039374.2|Ddx26b|ENSMUSG00000035967.9|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B 	ENSMUST00000101553.2|Ddx26b|ENSMUSG00000035967.9|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B
mm10_v2_chr5_-_137531952_137531984	0.0238305	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000140139.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr4_+_62583568_62583601	0.0238255	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000098031.3|Rgs3|ENSMUSG00000059810.12|regulator of G-protein signaling 3
mm10_v2_chr7_-_73537621_73537766	0.0235824	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000172704.1|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr2_+_116067213_116067250	0.0232215	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000152412.1|G630016G05Rik|ENSMUSG00000086308.1|RIKEN cDNA G630016G05 gene
mm10_v2_chr4_+_80834298_80834313	0.0220951	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000102831.1|Tyrp1|ENSMUSG00000005994.8|tyrosinase-related protein 1
mm10_v2_chr10_+_127420334_127420348	0.0220649	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000171434.1|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chr6_+_123262107_123262185	0.0207073	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000032240.2|Clec4d|ENSMUSG00000030144.2|C-type lectin domain family 4, member d
mm10_v2_chr12_-_57546121_57546141	0.0206427	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000044380.6|Foxa1|ENSMUSG00000035451.6|forkhead box A1
mm10_v2_chr2_+_130012336_130012350	0.0202715	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110299.2|Tgm3|ENSMUSG00000027401.9|transglutaminase 3, E polypeptide
mm10_v2_chr7_+_49910112_49910146	0.0201525	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000056442.5|Slc6a5|ENSMUSG00000039728.8|solute carrier family 6 (neurotransmitter transporter, glycine), member 5
mm10_v2_chr9_-_79977782_79977809	0.020067	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000093811.4|Filip1|ENSMUSG00000034898.9|filamin A interacting protein 1
mm10_v2_chr7_+_28881656_28881718	0.0195368	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000066880.4|Capn12|ENSMUSG00000054083.7|calpain 12
mm10_v2_chr3_+_86070915_86070915	0.0192401	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000182666.1|Sh3d19|ENSMUSG00000028082.7|SH3 domain protein D19
mm10_v2_chr18_-_56975333_56975376	0.0191643	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000139243.2|C330018D20Rik|ENSMUSG00000024592.9|RIKEN cDNA C330018D20 gene 	ENSMUST00000025488.8|C330018D20Rik|ENSMUSG00000024592.9|RIKEN cDNA C330018D20 gene
mm10_v2_chr2_-_6721606_6721629	0.0187568	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000150624.2|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000142941.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000100429.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000182879.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr2_-_6722187_6722236	0.0187271	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000182657.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr12_-_27160311_27160476	0.0182169	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000182473.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866 	ENSMUST00000177636.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866 	ENSMUST00000183238.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866
mm10_v2_chr2_-_77703252_77703272	0.0179866	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000171063.1|Zfp385b|ENSMUSG00000027016.11|zinc finger protein 385B
mm10_v2_chr17_-_49564262_49564337	0.0175835	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057610.6|Daam2|ENSMUSG00000040260.7|dishevelled associated activator of morphogenesis 2
mm10_v2_chr4_+_19818722_19818743	0.0174253	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035890.7|Slc7a13|ENSMUSG00000041052.8|solute carrier family 7, (cationic amino acid transporter, y+ system) member 13
mm10_v2_chrX_-_139871637_139871677	0.0165379	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000033811.7|Morc4|ENSMUSG00000031434.9|microrchidia 4 	ENSMUST00000087401.5|Morc4|ENSMUSG00000031434.9|microrchidia 4
mm10_v2_chr4_-_97584605_97584610	0.0162357	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107067.1|E130114P18Rik|ENSMUSG00000048747.8|RIKEN cDNA E130114P18 gene
mm10_v2_chrX_+_74127463_74127469	0.015898	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000033771.4|Opn1mw|ENSMUSG00000031394.5|opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan) 	ENSMUST00000101457.3|Opn1mw|ENSMUSG00000031394.5|opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)
mm10_v2_chr7_+_103550368_103550368	0.0153635	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106888.1|Olfr613|ENSMUSG00000078624.2|olfactory receptor 613
mm10_v2_chr12_-_56613270_56613291	0.0141716	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000072631.5|Nkx2-9|ENSMUSG00000058669.7|NK2 homeobox 9
mm10_v2_chr3_-_146682410_146682522	0.0136572	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000124931.1|Samd13|ENSMUSG00000048652.6|sterile alpha motif domain containing 13 	ENSMUST00000147113.1|Samd13|ENSMUSG00000048652.6|sterile alpha motif domain containing 13
mm10_v2_chr2_-_6721890_6721928	0.0136313	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114927.2|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr7_-_102210120_102210157	0.0136191	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000070165.5|Nup98|ENSMUSG00000063550.7|nucleoporin 98
mm10_v2_chr7_-_99141068_99141149	0.0132491	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000037968.8|Uvrag|ENSMUSG00000035354.8|UV radiation resistance associated gene
mm10_v2_chr7_+_102210335_102210445	0.0131662	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000140631.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2 	ENSMUST00000120879.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2 	ENSMUST00000146996.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2
mm10_v2_chr1_+_88306731_88306759	0.012459	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000040210.7|Trpm8|ENSMUSG00000036251.10|transient receptor potential cation channel, subfamily M, member 8
mm10_v2_chr2_+_73271925_73271939	0.011482	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000090813.5|Sp9|ENSMUSG00000068859.5|trans-acting transcription factor 9
mm10_v2_chr5_+_64812336_64812350	0.0113045	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000166409.1|Klf3|ENSMUSG00000029178.8|Kruppel-like factor 3 (basic)
mm10_v2_chr4_-_97584612_97584643	0.0110444	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107068.2|E130114P18Rik|ENSMUSG00000048747.8|RIKEN cDNA E130114P18 gene
mm10_v2_chr3_-_94412883_94412890	0.0104392	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000181305.1|1700040D17Rik|ENSMUSG00000097515.1|RIKEN cDNA 1700040D17 gene
mm10_v2_chr3_+_55461758_55461961	0.00939302	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000070418.4|Dclk1|ENSMUSG00000027797.9|doublecortin-like kinase 1
mm10_v2_chr2_+_153938218_153938223	0.00929012	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000109757.1|Bpifb4|ENSMUSG00000074665.4|BPI fold containing family B, member 4
mm10_v2_chr1_+_152750527_152750553	0.00912213	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000068875.4|Apobec4|ENSMUSG00000055547.4|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)
mm10_v2_chr13_+_80883403_80883422	0.00863153	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000099356.2|Arrdc3|ENSMUSG00000074794.3|arrestin domain containing 3
mm10_v2_chrX_-_95658416_95658509	0.00835808	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000044382.6|Zc4h2|ENSMUSG00000035062.7|zinc finger, C4H2 domain containing
mm10_v2_chr16_-_29544852_29544869	0.00828071	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000039090.8|Atp13a4|ENSMUSG00000038094.9|ATPase type 13A4
mm10_v2_chr3_-_72967854_72967869	0.00820733	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000167334.1|Sis|ENSMUSG00000027790.8|sucrase isomaltase (alpha-glucosidase)
mm10_v2_chr4_-_129558387_129558398	0.00779745	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000067240.4|Lck|ENSMUSG00000000409.8|lymphocyte protein tyrosine kinase
mm10_v2_chr8_+_23669653_23669671	0.00778508	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000042352.4|Zmat4|ENSMUSG00000037492.9|zinc finger, matrin type 4
mm10_v2_chr4_-_129558355_129558378	0.00744744	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000167288.1|Lck|ENSMUSG00000000409.8|lymphocyte protein tyrosine kinase 	ENSMUST00000134336.1|Lck|ENSMUSG00000000409.8|lymphocyte protein tyrosine kinase
mm10_v2_chr8_+_45627709_45627803	0.00735385	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000134321.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000135336.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr15_+_79690869_79690905	0.00732365	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000046463.8|Gtpbp1|ENSMUSG00000042535.8|GTP binding protein 1
mm10_v2_chr4_+_154964117_154964147	0.00686443	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000030931.4|Pank4|ENSMUSG00000029056.7|pantothenate kinase 4 	ENSMUST00000070953.4|Pank4|ENSMUSG00000029056.7|pantothenate kinase 4
mm10_v2_chr15_+_81744848_81744848	0.00624504	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000109554.1|Zc3h7b|ENSMUSG00000022390.10|zinc finger CCCH type containing 7B
mm10_v2_chr15_+_21111452_21111452	0.00582739	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000075132.6|Cdh12|ENSMUSG00000040452.8|cadherin 12
mm10_v2_chr1_-_190170178_190170237	0.00575931	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000177288.1|Prox1|ENSMUSG00000010175.7|prospero-related homeobox 1
mm10_v2_chr10_+_88885992_88886010	0.00565686	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020255.6|Slc5a8|ENSMUSG00000020062.6|solute carrier family 5 (iodide transporter), member 8
mm10_v2_chr7_+_123123870_123123901	0.00534593	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000094053.5|Tnrc6a|ENSMUSG00000052707.7|trinucleotide repeat containing 6a
mm10_v2_chr5_-_87482258_87482283	0.00505165	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000079811.6|Ugt2a1|ENSMUSG00000029268.8|UDP glucuronosyltransferase 2 family, polypeptide A1 	ENSMUST00000144144.1|Ugt2a1|ENSMUSG00000029268.8|UDP glucuronosyltransferase 2 family, polypeptide A1
mm10_v2_chr15_-_8710409_8710498	0.00426804	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000157065.1|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr6_-_23650206_23650271	0.00409627	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115354.1|Rnf133|ENSMUSG00000051956.4|ring finger protein 133
mm10_v2_chr19_-_14598031_14598088	0.00399019	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000167776.2|Tle4|ENSMUSG00000024642.10|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm10_v2_chr2_-_64393853_64393862	0.00375286	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000142353.1|Gm13575|ENSMUSG00000087702.1|predicted gene 13575
mm10_v2_chr17_-_29007925_29007962	0.00357651	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000009138.5|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38 	ENSMUST00000119274.1|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38
mm10_v2_chr8_+_4238733_4238767	0.00305342	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110998.2|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7 	ENSMUST00000062686.4|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7
mm10_v2_chr2_+_52038005_52038020	0.00268312	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000065927.5|Tnfaip6|ENSMUSG00000053475.5|tumor necrosis factor alpha induced protein 6
mm10_v2_chr5_+_14025305_14025327	0.00218947	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000073957.6|Sema3e|ENSMUSG00000063531.6|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
mm10_v2_chr10_+_82859198_82859217	0.00157248	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020484.6|Txnrd1|ENSMUSG00000020250.9|thioredoxin reductase 1
mm10_v2_chr16_-_4880284_4880315	0.00131957	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000037843.6|Ubald1|ENSMUSG00000039568.6|UBA-like domain containing 1
mm10_v2_chr6_+_28480337_28480370	0.000991805	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000001460.7|Snd1|ENSMUSG00000001424.8|staphylococcal nuclease and tudor domain containing 1 	ENSMUST00000167201.1|Snd1|ENSMUSG00000001424.8|staphylococcal nuclease and tudor domain containing 1
mm10_v2_chr12_+_31438209_31438227	0.000858545	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000001254.5|Slc26a3|ENSMUSG00000001225.6|solute carrier family 26, member 3
mm10_v2_chr16_-_97170707_97170759	0.000704288	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000056102.7|Dscam|ENSMUSG00000050272.9|Down syndrome cell adhesion molecule
mm10_v2_chr7_-_102116705_102116719	0.000350072	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000084830.1|Chrna10|ENSMUSG00000066279.2|cholinergic receptor, nicotinic, alpha polypeptide 10
