mm10_v2_chr9_-_45204083_45204106	4.70285	Nanog	ENSMUST00000034599.8|Tmprss4|ENSMUSG00000032091.8|transmembrane protease, serine 4
mm10_v2_chr1_-_158814469_158814469	3.26391	Nanog	ENSMUST00000161589.2|Pappa2|ENSMUSG00000073530.5|pappalysin 2
mm10_v2_chr3_+_105870898_105870912	3.24709	Nanog	ENSMUST00000010279.5|Adora3|ENSMUSG00000074344.2|adenosine A3 receptor
mm10_v2_chr7_-_142679533_142679726	2.64477	Nanog	ENSMUST00000162317.1|Ins2|ENSMUSG00000000215.4|insulin II 	ENSMUST00000125933.1|Ins2|ENSMUSG00000000215.4|insulin II 	ENSMUST00000105931.1|Ins2|ENSMUSG00000000215.4|insulin II 	ENSMUST00000105930.1|Ins2|ENSMUSG00000000215.4|insulin II 	ENSMUST00000105933.1|Ins2|ENSMUSG00000000215.4|insulin II 	ENSMUST00000105932.1|Ins2|ENSMUSG00000000215.4|insulin II 	ENSMUST00000000220.2|Ins2|ENSMUSG00000000215.4|insulin II
mm10_v2_chr15_+_9436028_9436083	2.31522	Nanog	ENSMUST00000042360.3|Capsl|ENSMUSG00000039676.3|calcyphosine-like
mm10_v2_chr4_-_11386757_11386783	2.07444	Nanog	ENSMUST00000108313.1|Esrp1|ENSMUSG00000040728.9|epithelial splicing regulatory protein 1 	ENSMUST00000108311.2|Esrp1|ENSMUSG00000040728.9|epithelial splicing regulatory protein 1
mm10_v2_chr12_-_69790660_69790735	1.99342	Nanog	ENSMUST00000021377.4|Cdkl1|ENSMUSG00000020990.4|cyclin-dependent kinase-like 1 (CDC2-related kinase)
mm10_v2_chr11_-_58529984_58529984	1.99157	Nanog	ENSMUST00000062869.2|Olfr330|ENSMUSG00000050818.3|olfactory receptor 330
mm10_v2_chr13_-_92131494_92131680	1.6453	Nanog	ENSMUST00000099326.3|Rasgrf2|ENSMUSG00000021708.10|RAS protein-specific guanine nucleotide-releasing factor 2 	ENSMUST00000146492.1|Rasgrf2|ENSMUSG00000021708.10|RAS protein-specific guanine nucleotide-releasing factor 2
mm10_v2_chr11_-_109298066_109298079	1.62948	Nanog	ENSMUST00000106706.1|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr11_-_109298121_109298142	1.56067	Nanog	ENSMUST00000020920.3|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr3_-_54915867_54915887	1.50845	Nanog	ENSMUST00000070342.3|Sertm1|ENSMUSG00000056306.5|serine rich and transmembrane domain containing 1
mm10_v2_chr3_+_105870858_105870895	1.35368	Nanog	ENSMUST00000164730.1|Adora3|ENSMUSG00000000562.4|adenosine A3 receptor
mm10_v2_chr11_-_109298090_109298118	1.33297	Nanog	ENSMUST00000106704.2|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr4_+_115088708_115088769	1.25405	Nanog	ENSMUST00000171877.1|Pdzk1ip1|ENSMUSG00000028716.9|PDZK1 interacting protein 1 	ENSMUST00000177647.1|Pdzk1ip1|ENSMUSG00000028716.9|PDZK1 interacting protein 1 	ENSMUST00000106548.2|Pdzk1ip1|ENSMUSG00000028716.9|PDZK1 interacting protein 1 	ENSMUST00000030488.2|Pdzk1ip1|ENSMUSG00000028716.9|PDZK1 interacting protein 1
mm10_v2_chr13_+_12565868_12565883	1.25065	Nanog	ENSMUST00000071973.6|Ero1lb|ENSMUSG00000057069.6|ERO1-like beta (S. cerevisiae)
mm10_v2_chr4_-_11386394_11386539	1.24485	Nanog	ENSMUST00000155519.1|Esrp1|ENSMUSG00000040728.9|epithelial splicing regulatory protein 1
mm10_v2_chr4_-_49549523_49549546	1.14793	Nanog	ENSMUST00000029987.9|Aldob|ENSMUSG00000028307.9|aldolase B, fructose-bisphosphate
mm10_v2_chr11_+_115154139_115154194	1.14747	Nanog	ENSMUST00000021076.5|Rab37|ENSMUSG00000020732.7|RAB37, member of RAS oncogene family
mm10_v2_chr3_-_144819494_144819494	1.1328	Nanog	ENSMUST00000029929.7|Clca2|ENSMUSG00000028262.9|chloride channel calcium activated 2
mm10_v2_chr12_+_24651346_24651409	1.1308	Nanog	ENSMUST00000020982.5|Klf11|ENSMUSG00000020653.5|Kruppel-like factor 11
mm10_v2_chr8_+_84415348_84415392	1.12524	Nanog	ENSMUST00000121390.1|Cacna1a|ENSMUSG00000034656.10|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit 	ENSMUST00000122053.1|Cacna1a|ENSMUSG00000034656.10|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
mm10_v2_chr4_+_43059028_43059080	1.11158	Nanog	ENSMUST00000163653.1|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans) 	ENSMUST00000107952.2|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans) 	ENSMUST00000107953.2|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans)
mm10_v2_chr19_-_36736653_36736670	1.09927	Nanog	ENSMUST00000087321.2|Ppp1r3c|ENSMUSG00000067279.2|protein phosphatase 1, regulatory (inhibitor) subunit 3C
mm10_v2_chr10_+_34483400_34483445	1.07676	Nanog	ENSMUST00000019913.7|Frk|ENSMUSG00000019779.8|fyn-related kinase 	ENSMUST00000170771.1|Frk|ENSMUSG00000019779.8|fyn-related kinase
mm10_v2_chr9_+_109096659_109096710	1.03252	Nanog	ENSMUST00000130366.1|Plxnb1|ENSMUSG00000053646.7|plexin B1
mm10_v2_chr17_+_21691860_21691860	1.02908	Nanog	ENSMUST00000072133.4|Gm10226|ENSMUSG00000067929.3|predicted gene 10226
mm10_v2_chr17_+_23660477_23660525	1.02197	Nanog	ENSMUST00000062967.8|Ccdc64b|ENSMUSG00000043782.8|coiled-coil domain containing 64B
mm10_v2_chr6_+_8259327_8259350	1.01934	Nanog	ENSMUST00000159378.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039
mm10_v2_chr12_+_69790288_69790288	1.01598	Nanog	ENSMUST00000021378.3|4930512B01Rik|ENSMUSG00000020992.3|RIKEN cDNA 4930512B01 gene
mm10_v2_chr18_-_21652362_21652373	1.00535	Nanog	ENSMUST00000049105.4|Klhl14|ENSMUSG00000042514.5|kelch-like 14
mm10_v2_chr4_-_42661893_42661893	0.975204	Nanog	ENSMUST00000108006.3|Il11ra2|ENSMUSG00000078735.3|interleukin 11 receptor, alpha chain 2
mm10_v2_chr6_-_124779686_124779742	0.973911	Nanog	ENSMUST00000147669.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000128697.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000032218.3|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000112475.2|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23
mm10_v2_chr6_-_116716888_116716923	0.971706	Nanog	ENSMUST00000056623.6|Tmem72|ENSMUSG00000048108.7|transmembrane protein 72
mm10_v2_chr6_+_80018877_80018945	0.951379	Nanog	ENSMUST00000147663.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000128718.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000126005.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000133918.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4
mm10_v2_chr10_-_127121125_127121160	0.925841	Nanog	ENSMUST00000164259.1|Os9|ENSMUSG00000040462.6|amplified in osteosarcoma 	ENSMUST00000080975.4|Os9|ENSMUSG00000040462.6|amplified in osteosarcoma
mm10_v2_chr8_-_89044162_89044195	0.917838	Nanog	ENSMUST00000034090.6|Sall1|ENSMUSG00000031665.6|sal-like 1 (Drosophila)
mm10_v2_chr4_-_46650102_46650209	0.893958	Nanog	ENSMUST00000084621.5|Tbc1d2|ENSMUSG00000039813.8|TBC1 domain family, member 2 	ENSMUST00000107750.1|Tbc1d2|ENSMUSG00000039813.8|TBC1 domain family, member 2
mm10_v2_chr15_-_34356421_34356421	0.859179	Nanog	ENSMUST00000179647.1|9430069I07Rik|ENSMUSG00000094447.1|RIKEN cDNA 9430069I07 gene
mm10_v2_chr4_+_43058939_43058969	0.857706	Nanog	ENSMUST00000079978.6|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans)
mm10_v2_chr2_+_164948219_164948245	0.828345	Nanog	ENSMUST00000017881.2|Mmp9|ENSMUSG00000017737.2|matrix metallopeptidase 9
mm10_v2_chr1_+_174501796_174501843	0.818697	Nanog	ENSMUST00000030039.7|Fmn2|ENSMUSG00000028354.8|formin 2
mm10_v2_chr10_-_81364846_81364859	0.817907	Nanog	ENSMUST00000131736.1|4930404N11Rik|ENSMUSG00000020234.4|RIKEN cDNA 4930404N11 gene
mm10_v2_chr6_+_8259288_8259312	0.80419	Nanog	ENSMUST00000159335.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039
mm10_v2_chr9_+_44379536_44379624	0.80076	Nanog	ENSMUST00000161318.1|Hyou1|ENSMUSG00000032115.7|hypoxia up-regulated 1 	ENSMUST00000160902.1|Hyou1|ENSMUSG00000032115.7|hypoxia up-regulated 1
mm10_v2_chr9_+_21955747_21955769	0.800153	Nanog	ENSMUST00000053583.5|Swsap1|ENSMUSG00000051238.5|SWIM type zinc finger 7 associated protein 1
mm10_v2_chr6_+_80019008_80019048	0.795575	Nanog	ENSMUST00000126399.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000136421.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4
mm10_v2_chr10_+_121641794_121641872	0.795005	Nanog	ENSMUST00000120642.1|D930020B18Rik|ENSMUSG00000047642.8|RIKEN cDNA D930020B18 gene 	ENSMUST00000132744.1|D930020B18Rik|ENSMUSG00000047642.8|RIKEN cDNA D930020B18 gene
mm10_v2_chr17_+_7170101_7170132	0.79474	Nanog	ENSMUST00000024575.6|Rps6ka2|ENSMUSG00000023809.9|ribosomal protein S6 kinase, polypeptide 2
mm10_v2_chr9_+_44379490_44379513	0.782621	Nanog	ENSMUST00000066601.6|Hyou1|ENSMUSG00000032115.7|hypoxia up-regulated 1
mm10_v2_chr1_-_182282218_182282239	0.778021	Nanog	ENSMUST00000133052.1|Degs1|ENSMUSG00000038633.5|degenerative spermatocyte homolog 1 (Drosophila)
mm10_v2_chrX_-_135009185_135009225	0.769479	Nanog	ENSMUST00000113185.2|Zmat1|ENSMUSG00000052676.10|zinc finger, matrin type 1 	ENSMUST00000064659.5|Zmat1|ENSMUSG00000052676.10|zinc finger, matrin type 1
mm10_v2_chr4_-_43046196_43046220	0.763349	Nanog	ENSMUST00000036462.5|Fam214b|ENSMUSG00000036002.6|family with sequence similarity 214, member B
mm10_v2_chr18_+_77185815_77185879	0.749795	Nanog	ENSMUST00000079618.4|St8sia5|ENSMUSG00000025425.11|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm10_v2_chr15_+_25773985_25774042	0.746951	Nanog	ENSMUST00000125667.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr5_+_135168382_135168442	0.742113	Nanog	ENSMUST00000111187.3|Bcl7b|ENSMUSG00000029681.6|B cell CLL/lymphoma 7B 	ENSMUST00000111188.1|Bcl7b|ENSMUSG00000029681.6|B cell CLL/lymphoma 7B
mm10_v2_chr19_-_56822161_56822220	0.73173	Nanog	ENSMUST00000118592.1|A630007B06Rik|ENSMUSG00000035173.8|RIKEN cDNA A630007B06 gene
mm10_v2_chr2_-_140066661_140066805	0.730447	Nanog	ENSMUST00000046656.2|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1 	ENSMUST00000099304.3|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1 	ENSMUST00000110079.2|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1
mm10_v2_chr17_+_25736040_25736040	0.727681	Nanog	ENSMUST00000047098.5|Mslnl|ENSMUSG00000041062.6|mesothelin-like
mm10_v2_chr6_+_29853746_29853790	0.727655	Nanog	ENSMUST00000064872.6|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2 	ENSMUST00000152581.1|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2 	ENSMUST00000176265.1|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2 	ENSMUST00000154079.1|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chrX_-_153037549_153037581	0.72422	Nanog	ENSMUST00000051484.3|Mageh1|ENSMUSG00000047238.3|melanoma antigen, family H, 1
mm10_v2_chr14_+_65970610_65970621	0.722187	Nanog	ENSMUST00000127387.1|Clu|ENSMUSG00000022037.8|clusterin
mm10_v2_chr2_+_57997884_57997884	0.720535	Nanog	ENSMUST00000112616.1|Galnt5|ENSMUSG00000026828.5|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 	ENSMUST00000166729.1|Galnt5|ENSMUSG00000026828.5|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5
mm10_v2_chr10_-_109010955_109010983	0.719766	Nanog	ENSMUST00000105276.1|Syt1|ENSMUSG00000035864.8|synaptotagmin I 	ENSMUST00000064054.7|Syt1|ENSMUSG00000035864.8|synaptotagmin I
mm10_v2_chr5_+_135168283_135168373	0.715409	Nanog	ENSMUST00000031692.5|Bcl7b|ENSMUSG00000029681.6|B cell CLL/lymphoma 7B
mm10_v2_chr15_+_80255184_80255263	0.714596	Nanog	ENSMUST00000109605.3|Atf4|ENSMUSG00000042406.7|activating transcription factor 4
mm10_v2_chr3_+_105904377_105904423	0.713642	Nanog	ENSMUST00000000574.1|Adora3|ENSMUSG00000000562.4|adenosine A3 receptor
mm10_v2_chr15_+_39745926_39745937	0.696305	Nanog	ENSMUST00000022913.4|Dcstamp|ENSMUSG00000022303.8|dentrocyte expressed seven transmembrane protein
mm10_v2_chr10_+_121641588_121641588	0.681217	Nanog	ENSMUST00000142501.1|D930020B18Rik|ENSMUSG00000047642.8|RIKEN cDNA D930020B18 gene
mm10_v2_chr3_+_89421619_89421642	0.675469	Nanog	ENSMUST00000094378.3|Shc1|ENSMUSG00000042626.7|src homology 2 domain-containing transforming protein C1 	ENSMUST00000137793.1|Shc1|ENSMUSG00000042626.7|src homology 2 domain-containing transforming protein C1
mm10_v2_chr2_+_62664279_62664300	0.669692	Nanog	ENSMUST00000028257.2|Gca|ENSMUSG00000026893.4|grancalcin
mm10_v2_chr19_+_60889749_60889749	0.667591	Nanog	ENSMUST00000003313.8|Grk5|ENSMUSG00000003228.8|G protein-coupled receptor kinase 5
mm10_v2_chr17_+_29135056_29135056	0.664391	Nanog	ENSMUST00000087942.4|Rab44|ENSMUSG00000064147.6|RAB44, member RAS oncogene family
mm10_v2_chr18_+_84851338_84851429	0.65629	Nanog	ENSMUST00000160180.1|Cyb5|ENSMUSG00000024646.7|cytochrome b-5
mm10_v2_chrX_-_20962005_20962025	0.648016	Nanog	ENSMUST00000123836.1|Uxt|ENSMUSG00000001134.3|ubiquitously expressed transcript
mm10_v2_chr7_-_25754701_25754750	0.645695	Nanog	ENSMUST00000108401.1|Hnrnpul1|ENSMUSG00000040725.7|heterogeneous nuclear ribonucleoprotein U-like 1 	ENSMUST00000043765.7|Hnrnpul1|ENSMUSG00000040725.7|heterogeneous nuclear ribonucleoprotein U-like 1
mm10_v2_chr9_-_106891401_106891438	0.645046	Nanog	ENSMUST00000069036.7|Manf|ENSMUSG00000032575.10|mesencephalic astrocyte-derived neurotrophic factor
mm10_v2_chr12_+_35047180_35047230	0.639396	Nanog	ENSMUST00000048519.9|Snx13|ENSMUSG00000020590.9|sorting nexin 13 	ENSMUST00000163677.1|Snx13|ENSMUSG00000020590.9|sorting nexin 13
mm10_v2_chr11_+_69088490_69088553	0.622268	Nanog	ENSMUST00000021273.6|Vamp2|ENSMUSG00000020894.10|vesicle-associated membrane protein 2 	ENSMUST00000117780.1|Vamp2|ENSMUSG00000020894.10|vesicle-associated membrane protein 2
mm10_v2_chr10_+_39612934_39612934	0.619116	Nanog	ENSMUST00000019987.6|Traf3ip2|ENSMUSG00000019842.6|TRAF3 interacting protein 2
mm10_v2_chr6_+_30610984_30611026	0.613595	Nanog	ENSMUST00000062758.4|Cpa5|ENSMUSG00000029788.7|carboxypeptidase A5
mm10_v2_chr14_+_65970804_65970903	0.612479	Nanog	ENSMUST00000138191.1|Clu|ENSMUSG00000022037.8|clusterin
mm10_v2_chr19_+_7557452_7557465	0.60919	Nanog	ENSMUST00000025925.4|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI 	ENSMUST00000136465.1|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI
mm10_v2_chr6_+_30611029_30611051	0.604871	Nanog	ENSMUST00000115138.1|Cpa5|ENSMUSG00000029788.7|carboxypeptidase A5
mm10_v2_chr11_-_99244058_99244136	0.596796	Nanog	ENSMUST00000103132.3|Krt222|ENSMUSG00000035849.8|keratin 222 	ENSMUST00000038214.6|Krt222|ENSMUSG00000035849.8|keratin 222
mm10_v2_chr15_+_99392948_99393022	0.595415	Nanog	ENSMUST00000161250.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000160635.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000161778.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr14_+_65971049_65971074	0.59217	Nanog	ENSMUST00000128539.1|Clu|ENSMUSG00000022037.8|clusterin
mm10_v2_chr4_-_129261394_129261406	0.589859	Nanog	ENSMUST00000145261.1|C77080|ENSMUSG00000050390.6|expressed sequence C77080
mm10_v2_chr17_-_57247632_57247694	0.589838	Nanog	ENSMUST00000005975.6|Gpr108|ENSMUSG00000005823.8|G protein-coupled receptor 108
mm10_v2_chr11_-_20332689_20332774	0.588253	Nanog	ENSMUST00000109594.1|Slc1a4|ENSMUSG00000020142.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm10_v2_chr4_-_58553553_58553898	0.585474	Nanog	ENSMUST00000107575.2|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000107574.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000147354.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr5_-_134456702_134456785	0.584934	Nanog	ENSMUST00000073161.5|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000171794.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000111245.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100654.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000167084.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100652.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100650.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000074114.5|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1
mm10_v2_chr12_+_111814170_111814245	0.583003	Nanog	ENSMUST00000021714.7|Zfyve21|ENSMUSG00000021286.7|zinc finger, FYVE domain containing 21
mm10_v2_chr15_+_99392882_99392903	0.581169	Nanog	ENSMUST00000023749.8|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr8_+_25720054_25720099	0.574845	Nanog	ENSMUST00000068916.8|Ppapdc1b|ENSMUSG00000031570.10|phosphatidic acid phosphatase type 2 domain containing 1B 	ENSMUST00000139836.1|Ppapdc1b|ENSMUSG00000031570.10|phosphatidic acid phosphatase type 2 domain containing 1B
mm10_v2_chr7_-_133702515_133702616	0.574698	Nanog	ENSMUST00000153698.1|Uros|ENSMUSG00000030979.6|uroporphyrinogen III synthase
mm10_v2_chr6_+_71282280_71282280	0.573942	Nanog	ENSMUST00000080949.7|Krcc1|ENSMUSG00000053012.11|lysine-rich coiled-coil 1
mm10_v2_chr4_-_149454971_149454986	0.572631	Nanog	ENSMUST00000030848.2|Rbp7|ENSMUSG00000028996.3|retinol binding protein 7, cellular
mm10_v2_chr3_+_106113229_106113390	0.568495	Nanog	ENSMUST00000079132.5|Chia|ENSMUSG00000062778.6|chitinase, acidic 	ENSMUST00000139086.1|Chia|ENSMUSG00000062778.6|chitinase, acidic
mm10_v2_chr14_+_73237891_73238007	0.567206	Nanog	ENSMUST00000044405.6|Lpar6|ENSMUSG00000033446.6|lysophosphatidic acid receptor 6
mm10_v2_chr4_+_133553370_133553393	0.55735	Nanog	ENSMUST00000042706.2|Nr0b2|ENSMUSG00000037583.2|nuclear receptor subfamily 0, group B, member 2
mm10_v2_chr3_-_146499721_146499803	0.553799	Nanog	ENSMUST00000029839.4|Spata1|ENSMUSG00000028188.7|spermatogenesis associated 1
mm10_v2_chr10_+_127898515_127898532	0.54998	Nanog	ENSMUST00000047134.7|Sdr9c7|ENSMUSG00000040127.7|4short chain dehydrogenase/reductase family 9C, member 7
mm10_v2_chr2_-_181581996_181582008	0.547093	Nanog	ENSMUST00000057816.8|Uckl1|ENSMUSG00000089917.1|uridine-cytidine kinase 1-like 1
mm10_v2_chr6_+_41458923_41458936	0.546437	Nanog	ENSMUST00000031910.7|Prss1|ENSMUSG00000062751.5|protease, serine, 1 (trypsin 1)
mm10_v2_chr11_-_20332654_20332688	0.534121	Nanog	ENSMUST00000004634.6|Slc1a4|ENSMUSG00000020142.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm10_v2_chr11_+_66911981_66912003	0.520941	Nanog	ENSMUST00000123434.2|Pirt|ENSMUSG00000048070.4|phosphoinositide-interacting regulator of transient receptor potential channels
mm10_v2_chrX_+_159840463_159840481	0.517126	Nanog	ENSMUST00000112451.1|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1 	ENSMUST00000112453.2|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr7_+_113514085_113514109	0.514728	Nanog	ENSMUST00000122890.1|Far1|ENSMUSG00000030759.10|fatty acyl CoA reductase 1
mm10_v2_chr4_+_126024506_126024550	0.511916	Nanog	ENSMUST00000106162.1|Csf3r|ENSMUSG00000028859.8|colony stimulating factor 3 receptor (granulocyte)
mm10_v2_chr5_-_137684665_137684729	0.497514	Nanog	ENSMUST00000100544.4|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000031736.9|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000151839.1|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2
mm10_v2_chr6_-_136922169_136922198	0.495947	Nanog	ENSMUST00000032343.6|Erp27|ENSMUSG00000030219.7|endoplasmic reticulum protein 27
mm10_v2_chr19_+_7557473_7557497	0.493542	Nanog	ENSMUST00000141887.1|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI 	ENSMUST00000136756.1|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI
mm10_v2_chr1_+_60908993_60909033	0.492519	Nanog	ENSMUST00000027164.2|Ctla4|ENSMUSG00000026011.7|cytotoxic T-lymphocyte-associated protein 4
mm10_v2_chr15_+_99393219_99393248	0.490302	Nanog	ENSMUST00000159209.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr17_-_34972124_34972158	0.485939	Nanog	ENSMUST00000087328.2|Hspa1a|ENSMUSG00000091971.2|heat shock protein 1A 	ENSMUST00000179128.1|Hspa1a|ENSMUSG00000091971.2|heat shock protein 1A
mm10_v2_chr17_+_35379608_35379637	0.480849	Nanog	ENSMUST00000081435.4|H2-Q4|ENSMUSG00000035929.11|histocompatibility 2, Q region locus 4
mm10_v2_chr3_-_88552859_88553024	0.477942	Nanog	ENSMUST00000119002.1|Lamtor2|ENSMUSG00000028062.9|late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 	ENSMUST00000029698.8|Lamtor2|ENSMUSG00000028062.9|late endosomal/lysosomal adaptor, MAPK and MTOR activator 2
mm10_v2_chr8_+_78509319_78509399	0.472241	Nanog	ENSMUST00000034111.8|Slc10a7|ENSMUSG00000031684.10|solute carrier family 10 (sodium/bile acid cotransporter family), member 7
mm10_v2_chr7_+_49246131_49246202	0.472059	Nanog	ENSMUST00000064395.6|Nav2|ENSMUSG00000052512.9|neuron navigator 2
mm10_v2_chr15_-_103251465_103251705	0.470191	Nanog	ENSMUST00000133600.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000134554.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000156927.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000149111.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000132836.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2
mm10_v2_chr4_+_12906838_12906881	0.468033	Nanog	ENSMUST00000143186.1|Triqk|ENSMUSG00000055963.6|triple QxxK/R motif containing 	ENSMUST00000183345.1|Triqk|ENSMUSG00000055963.6|triple QxxK/R motif containing
mm10_v2_chr7_+_64287665_64287676	0.465306	Nanog	ENSMUST00000032736.4|Mtmr10|ENSMUSG00000030522.8|myotubularin related protein 10
mm10_v2_chr17_+_46681038_46681184	0.46399	Nanog	ENSMUST00000002845.6|Mea1|ENSMUSG00000002768.7|male enhanced antigen 1
mm10_v2_chr1_+_169969409_169969454	0.457842	Nanog	ENSMUST00000180638.1|3110045C21Rik|ENSMUSG00000097503.1|RIKEN cDNA 3110045C21 gene
mm10_v2_chr8_-_25201349_25201459	0.456805	Nanog	ENSMUST00000084512.4|Tacc1|ENSMUSG00000065954.4|transforming, acidic coiled-coil containing protein 1 	ENSMUST00000084030.4|Tacc1|ENSMUSG00000065954.4|transforming, acidic coiled-coil containing protein 1
mm10_v2_chrX_+_139563316_139563339	0.456252	Nanog	ENSMUST00000113027.1|Rnf128|ENSMUSG00000031438.5|ring finger protein 128
mm10_v2_chr13_-_9765137_9765321	0.446065	Nanog	ENSMUST00000062658.8|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000130151.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000110636.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000152725.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr1_-_9298499_9298573	0.444707	Nanog	ENSMUST00000132064.1|Sntg1|ENSMUSG00000025909.10|syntrophin, gamma 1
mm10_v2_chr4_+_58285930_58285975	0.440038	Nanog	ENSMUST00000081919.5|Musk|ENSMUSG00000057280.9|muscle, skeletal, receptor tyrosine kinase 	ENSMUST00000102893.3|Musk|ENSMUSG00000057280.9|muscle, skeletal, receptor tyrosine kinase 	ENSMUST00000084578.5|Musk|ENSMUSG00000057280.9|muscle, skeletal, receptor tyrosine kinase 	ENSMUST00000098057.3|Musk|ENSMUSG00000057280.9|muscle, skeletal, receptor tyrosine kinase 	ENSMUST00000179951.1|Musk|ENSMUSG00000057280.9|muscle, skeletal, receptor tyrosine kinase 	ENSMUST00000098059.3|Musk|ENSMUSG00000057280.9|muscle, skeletal, receptor tyrosine kinase 	ENSMUST00000177951.1|Musk|ENSMUSG00000057280.9|muscle, skeletal, receptor tyrosine kinase
mm10_v2_chr5_+_19907502_19907551	0.437421	Nanog	ENSMUST00000101558.3|Magi2|ENSMUSG00000040003.11|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm10_v2_chr12_-_113330518_113330523	0.436677	Nanog	ENSMUST00000103420.1|Ighg1|ENSMUSG00000076614.2|immunoglobulin heavy constant gamma 1 (G1m marker)
mm10_v2_chrX_-_164250368_164250382	0.435288	Nanog	ENSMUST00000112263.1|Bmx|ENSMUSG00000031377.5|BMX non-receptor tyrosine kinase
mm10_v2_chr14_+_61607455_61607482	0.434348	Nanog	ENSMUST00000051184.8|Kcnrg|ENSMUSG00000046168.8|potassium channel regulator
mm10_v2_chr17_-_15826521_15826590	0.429852	Nanog	ENSMUST00000170578.1|Rgmb|ENSMUSG00000048027.7|RGM domain family, member B
mm10_v2_chr1_+_146497614_146497707	0.428783	Nanog	ENSMUST00000132847.1|Brinp3|ENSMUSG00000035131.8|bone morphogenetic protein/retinoic acid inducible neural specific 3 	ENSMUST00000166814.1|Brinp3|ENSMUSG00000035131.8|bone morphogenetic protein/retinoic acid inducible neural specific 3
mm10_v2_chr11_-_58502554_58502572	0.423219	Nanog	ENSMUST00000170501.2|Olfr331|ENSMUSG00000058807.4|olfactory receptor 331 	ENSMUST00000081743.2|Olfr331|ENSMUSG00000058807.4|olfactory receptor 331
mm10_v2_chr3_-_37312418_37312465	0.419299	Nanog	ENSMUST00000075537.6|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000071400.6|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000102955.4|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000140956.1|Cetn4|ENSMUSG00000045031.12|centrin 4
mm10_v2_chr5_-_135744206_135744271	0.419005	Nanog	ENSMUST00000153399.1|Tmem120a|ENSMUSG00000039886.2|transmembrane protein 120A 	ENSMUST00000043378.2|Tmem120a|ENSMUSG00000039886.2|transmembrane protein 120A
mm10_v2_chr5_+_19907774_19907861	0.413649	Nanog	ENSMUST00000115267.2|Magi2|ENSMUSG00000040003.11|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm10_v2_chr18_-_78206408_78206440	0.408902	Nanog	ENSMUST00000163367.1|Slc14a2|ENSMUSG00000024552.9|solute carrier family 14 (urea transporter), member 2
mm10_v2_chr4_-_126968124_126968154	0.407913	Nanog	ENSMUST00000106108.2|Zmym4|ENSMUSG00000042446.10|zinc finger, MYM-type 4
mm10_v2_chr7_+_104329471_104329471	0.405276	Nanog	ENSMUST00000180136.1|Trim34b|ENSMUSG00000090215.2|tripartite motif-containing 34B 	ENSMUST00000178316.1|Trim34b|ENSMUSG00000090215.2|tripartite motif-containing 34B
mm10_v2_chr2_+_11339461_11339501	0.404366	Nanog	ENSMUST00000131188.1|Gm13293|ENSMUSG00000086006.1|predicted gene 13293
mm10_v2_chr6_-_29179584_29179584	0.403158	Nanog	ENSMUST00000159200.1|Prrt4|ENSMUSG00000079654.3|proline-rich transmembrane protein 4
mm10_v2_chr12_-_83921809_83921898	0.399725	Nanog	ENSMUST00000135962.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000155112.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000136848.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000126943.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr14_-_49245389_49245441	0.393206	Nanog	ENSMUST00000130853.1|1700011H14Rik|ENSMUSG00000021850.7|RIKEN cDNA 1700011H14 gene 	ENSMUST00000022398.7|1700011H14Rik|ENSMUSG00000021850.7|RIKEN cDNA 1700011H14 gene
mm10_v2_chr15_+_34453285_34453312	0.39234	Nanog	ENSMUST00000060894.7|BC030476|ENSMUSG00000044726.7|cDNA sequence BC030476
mm10_v2_chr10_+_75037066_75037100	0.389056	Nanog	ENSMUST00000147802.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family 	ENSMUST00000020391.5|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr6_+_8259379_8259460	0.38836	Nanog	ENSMUST00000162034.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039 	ENSMUST00000160705.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039 	ENSMUST00000159433.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039
mm10_v2_chr2_-_84715160_84715218	0.382835	Nanog	ENSMUST00000035840.5|Zdhhc5|ENSMUSG00000034075.10|zinc finger, DHHC domain containing 5
mm10_v2_chr4_+_136310991_136311054	0.379584	Nanog	ENSMUST00000084219.5|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R
mm10_v2_chr7_-_6730412_6730431	0.378537	Nanog	ENSMUST00000051209.4|Peg3|ENSMUSG00000002265.9|paternally expressed 3
mm10_v2_chr15_+_76246747_76246807	0.375371	Nanog	ENSMUST00000023225.6|Grina|ENSMUSG00000022564.6|glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)
mm10_v2_chr1_-_75133866_75133890	0.375193	Nanog	ENSMUST00000027405.4|Slc23a3|ENSMUSG00000026205.7|solute carrier family 23 (nucleobase transporters), member 3
mm10_v2_chr4_+_80834298_80834313	0.372784	Nanog	ENSMUST00000102831.1|Tyrp1|ENSMUSG00000005994.8|tyrosinase-related protein 1
mm10_v2_chr3_+_37348645_37348716	0.370768	Nanog	ENSMUST00000038885.3|Fgf2|ENSMUSG00000037225.7|fibroblast growth factor 2
mm10_v2_chr4_+_80834123_80834230	0.370484	Nanog	ENSMUST00000133655.1|Tyrp1|ENSMUSG00000005994.8|tyrosinase-related protein 1 	ENSMUST00000006151.6|Tyrp1|ENSMUSG00000005994.8|tyrosinase-related protein 1
mm10_v2_chr9_+_54538984_54538993	0.35779	Nanog	ENSMUST00000060242.5|Sh2d7|ENSMUSG00000046460.8|SH2 domain containing 7 	ENSMUST00000118413.1|Sh2d7|ENSMUSG00000046460.8|SH2 domain containing 7
mm10_v2_chr14_-_78536762_78536851	0.354401	Nanog	ENSMUST00000123853.1|Akap11|ENSMUSG00000022016.9|A kinase (PRKA) anchor protein 11
mm10_v2_chr8_+_47824459_47824482	0.352243	Nanog	ENSMUST00000038693.6|Cldn22|ENSMUSG00000038064.6|claudin 22
mm10_v2_chr11_-_116077606_116077750	0.345745	Nanog	ENSMUST00000106450.1|Unc13d|ENSMUSG00000057948.6|unc-13 homolog D (C. elegans)
mm10_v2_chr4_-_63154130_63154173	0.342884	Nanog	ENSMUST00000030041.4|Ambp|ENSMUSG00000028356.4|alpha 1 microglobulin/bikunin
mm10_v2_chr14_-_12345847_12345872	0.342568	Nanog	ENSMUST00000022262.4|Fezf2|ENSMUSG00000021743.5|Fez family zinc finger 2
mm10_v2_chr6_+_125145235_125145251	0.333473	Nanog	ENSMUST00000119527.1|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000088276.6|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000051171.7|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000117675.1|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1
mm10_v2_chr3_-_88254706_88254722	0.33334	Nanog	ENSMUST00000171887.1|Rhbg|ENSMUSG00000001417.4|Rhesus blood group-associated B glycoprotein
mm10_v2_chr4_+_109415631_109415648	0.332836	Nanog	ENSMUST00000106618.1|Ttc39a|ENSMUSG00000028555.9|tetratricopeptide repeat domain 39A
mm10_v2_chr1_+_88055467_88055481	0.329529	Nanog	ENSMUST00000173325.1|Ugt1a10|ENSMUSG00000090165.2|UDP glycosyltransferase 1 family, polypeptide A10
mm10_v2_chr2_-_167062981_167063048	0.328248	Nanog	ENSMUST00000048988.7|Znfx1|ENSMUSG00000039501.8|zinc finger, NFX1-type containing 1
mm10_v2_chr19_+_46356880_46356942	0.327228	Nanog	ENSMUST00000086969.6|Tmem180|ENSMUSG00000025227.8|transmembrane protein 180 	ENSMUST00000128455.1|Tmem180|ENSMUSG00000025227.8|transmembrane protein 180
mm10_v2_chr3_+_5214763_5214763	0.326057	Nanog	ENSMUST00000177924.1|Gm10748|ENSMUSG00000094451.1|predicted gene 10748
mm10_v2_chr7_+_30458280_30458315	0.324438	Nanog	ENSMUST00000126297.1|Nphs1|ENSMUSG00000006649.10|nephrosis 1, nephrin
mm10_v2_chr12_+_108334341_108334406	0.320688	Nanog	ENSMUST00000021684.4|Cyp46a1|ENSMUSG00000021259.4|cytochrome P450, family 46, subfamily a, polypeptide 1
mm10_v2_chr15_-_3303521_3303569	0.316268	Nanog	ENSMUST00000165386.1|Ccdc152|ENSMUSG00000091119.1|coiled-coil domain containing 152
mm10_v2_chr9_+_104063678_104063710	0.313204	Nanog	ENSMUST00000047799.5|Acad11|ENSMUSG00000090150.2|acyl-Coenzyme A dehydrogenase family, member 11
mm10_v2_chr15_-_101573883_101573913	0.30988	Nanog	ENSMUST00000042957.5|Krt75|ENSMUSG00000022986.5|keratin 75
mm10_v2_chr11_+_75468040_75468096	0.308909	Nanog	ENSMUST00000043598.7|Tlcd2|ENSMUSG00000038217.7|TLC domain containing 2 	ENSMUST00000108435.1|Tlcd2|ENSMUSG00000038217.7|TLC domain containing 2
mm10_v2_chr14_+_27000362_27000507	0.307653	Nanog	ENSMUST00000035433.8|Hesx1|ENSMUSG00000040726.8|homeobox gene expressed in ES cells
mm10_v2_chr14_-_55524938_55524967	0.3064	Nanog	ENSMUST00000178694.1|Nrl|ENSMUSG00000040632.9|neural retina leucine zipper gene
mm10_v2_chr17_-_59013264_59013372	0.299396	Nanog	ENSMUST00000174122.1|Nudt12|ENSMUSG00000024228.6|nudix (nucleoside diphosphate linked moiety X)-type motif 12 	ENSMUST00000025065.5|Nudt12|ENSMUSG00000024228.6|nudix (nucleoside diphosphate linked moiety X)-type motif 12
mm10_v2_chr1_-_153900198_153900210	0.297266	Nanog	ENSMUST00000123490.1|5830403L16Rik|ENSMUSG00000045968.6|RIKEN cDNA 5830403L16 gene
mm10_v2_chr11_+_49280150_49280150	0.295822	Nanog	ENSMUST00000078932.1|Olfr1393|ENSMUSG00000059864.1|olfactory receptor 1393
mm10_v2_chr2_-_164828529_164828537	0.294476	Nanog	ENSMUST00000017911.3|Spata25|ENSMUSG00000017767.3|spermatogenesis associated 25
mm10_v2_chr11_-_59839745_59839763	0.291542	Nanog	ENSMUST00000141415.1|Cops3|ENSMUSG00000019373.5|COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana)
mm10_v2_chr15_-_97247287_97247315	0.291183	Nanog	ENSMUST00000053106.5|Amigo2|ENSMUSG00000048218.5|adhesion molecule with Ig like domain 2
mm10_v2_chr1_+_88055377_88055449	0.285845	Nanog	ENSMUST00000138182.1|Ugt1a10|ENSMUSG00000090165.2|UDP glycosyltransferase 1 family, polypeptide A10 	ENSMUST00000113142.3|Ugt1a10|ENSMUSG00000090165.2|UDP glycosyltransferase 1 family, polypeptide A10
mm10_v2_chr10_-_42583628_42583639	0.285262	Nanog	ENSMUST00000019938.4|Nr2e1|ENSMUSG00000019803.5|nuclear receptor subfamily 2, group E, member 1
mm10_v2_chr18_+_37518341_37518359	0.284845	Nanog	ENSMUST00000097609.1|Pcdhb22|ENSMUSG00000073591.3|protocadherin beta 22
mm10_v2_chr13_-_21716143_21716189	0.284054	Nanog	ENSMUST00000091756.1|Hist1h2bl|ENSMUSG00000094338.1|histone cluster 1, H2bl
mm10_v2_chr10_-_103029043_103029054	0.283611	Nanog	ENSMUST00000167156.2|Alx1|ENSMUSG00000036602.7|ALX homeobox 1
mm10_v2_chr14_+_79515618_79515694	0.283389	Nanog	ENSMUST00000110835.1|Elf1|ENSMUSG00000036461.9|E74-like factor 1
mm10_v2_chr18_+_13006990_13006990	0.275076	Nanog	ENSMUST00000041676.2|Hrh4|ENSMUSG00000037346.4|histamine receptor H4
mm10_v2_chr5_-_139484475_139484549	0.274892	Nanog	ENSMUST00000110851.1|Zfand2a|ENSMUSG00000053581.7|zinc finger, AN1-type domain 2A 	ENSMUST00000079996.6|Zfand2a|ENSMUSG00000053581.7|zinc finger, AN1-type domain 2A
mm10_v2_chr1_+_153874335_153874354	0.272019	Nanog	ENSMUST00000055314.3|Gm5531|ENSMUSG00000043282.3|predicted gene 5531
mm10_v2_chr15_-_101892916_101892921	0.270395	Nanog	ENSMUST00000100179.1|Krt76|ENSMUSG00000075402.1|keratin 76
mm10_v2_chr14_-_55524975_55524985	0.270126	Nanog	ENSMUST00000062232.7|Nrl|ENSMUSG00000040632.9|neural retina leucine zipper gene
mm10_v2_chr7_+_28693032_28693144	0.268934	Nanog	ENSMUST00000151227.1|Fbxo27|ENSMUSG00000037463.8|F-box protein 27 	ENSMUST00000108281.1|Fbxo27|ENSMUSG00000037463.8|F-box protein 27
mm10_v2_chr4_+_136310936_136310947	0.266718	Nanog	ENSMUST00000131671.1|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R
mm10_v2_chr6_-_124829398_124829484	0.264619	Nanog	ENSMUST00000142058.1|Usp5|ENSMUSG00000038429.4|ubiquitin specific peptidase 5 (isopeptidase T) 	ENSMUST00000122110.1|Usp5|ENSMUSG00000038429.4|ubiquitin specific peptidase 5 (isopeptidase T) 	ENSMUST00000047510.3|Usp5|ENSMUSG00000038429.4|ubiquitin specific peptidase 5 (isopeptidase T)
mm10_v2_chr2_-_167833642_167833648	0.261388	Nanog	ENSMUST00000143649.1|1200007C13Rik|ENSMUSG00000087684.1|RIKEN cDNA 1200007C13 gene
mm10_v2_chr16_-_9994921_9995012	0.260601	Nanog	ENSMUST00000115835.1|Grin2a|ENSMUSG00000059003.6|glutamate receptor, ionotropic, NMDA2A (epsilon 1)
mm10_v2_chr12_-_83921899_83921934	0.25858	Nanog	ENSMUST00000117217.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr11_+_95712673_95712673	0.258385	Nanog	ENSMUST00000107717.1|Zfp652|ENSMUSG00000075595.3|zinc finger protein 652
mm10_v2_chr6_-_140041409_140041466	0.257901	Nanog	ENSMUST00000032356.6|Plcz1|ENSMUSG00000030230.9|phospholipase C, zeta 1
mm10_v2_chr13_+_104178797_104178872	0.257633	Nanog	ENSMUST00000022225.5|Trim23|ENSMUSG00000021712.8|tripartite motif-containing 23 	ENSMUST00000069187.5|Trim23|ENSMUSG00000021712.8|tripartite motif-containing 23
mm10_v2_chr8_-_34965631_34965714	0.255676	Nanog	ENSMUST00000033929.4|Tnks|ENSMUSG00000031529.4|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm10_v2_chr18_+_57142782_57142796	0.248476	Nanog	ENSMUST00000139892.1|Megf10|ENSMUSG00000024593.9|multiple EGF-like-domains 10
mm10_v2_chr3_+_130617448_130617583	0.24801	Nanog	ENSMUST00000166187.1|Etnppl|ENSMUSG00000019232.8|ethanolamine phosphate phospholyase 	ENSMUST00000072271.6|Etnppl|ENSMUSG00000019232.8|ethanolamine phosphate phospholyase
mm10_v2_chrX_+_13661354_13661366	0.247633	Nanog	ENSMUST00000053659.1|Gpr82|ENSMUSG00000047678.1|G protein-coupled receptor 82
mm10_v2_chr8_-_90908415_90908415	0.247509	Nanog	ENSMUST00000098517.1|Gm6658|ENSMUSG00000074171.1|predicted gene 6658
mm10_v2_chr4_+_107968332_107968424	0.244921	Nanog	ENSMUST00000106713.3|Slc1a7|ENSMUSG00000008932.9|solute carrier family 1 (glutamate transporter), member 7
mm10_v2_chr4_+_86575668_86575689	0.240641	Nanog	ENSMUST00000091064.6|Rraga|ENSMUSG00000070934.5|Ras-related GTP binding A
mm10_v2_chr11_-_70646972_70647058	0.238254	Nanog	ENSMUST00000014750.8|Slc25a11|ENSMUSG00000014606.8|solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11
mm10_v2_chr13_-_12258093_12258134	0.235942	Nanog	ENSMUST00000099856.4|Mtr|ENSMUSG00000021311.8|5-methyltetrahydrofolate-homocysteine methyltransferase
mm10_v2_chr13_-_9764943_9764994	0.235586	Nanog	ENSMUST00000110634.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr1_-_36445248_36445271	0.231598	Nanog	ENSMUST00000125304.1|Lman2l|ENSMUSG00000001143.7|lectin, mannose-binding 2-like 	ENSMUST00000115011.1|Lman2l|ENSMUSG00000001143.7|lectin, mannose-binding 2-like
mm10_v2_chr3_+_121291725_121291817	0.230764	Nanog	ENSMUST00000039442.7|Alg14|ENSMUSG00000039887.7|asparagine-linked glycosylation 14
mm10_v2_chr11_+_88294043_88294073	0.228372	Nanog	ENSMUST00000037268.4|1700106J16Rik|ENSMUSG00000034031.4|RIKEN cDNA 1700106J16 gene
mm10_v2_chr12_+_109747903_109748051	0.22792	Nanog	ENSMUST00000183084.1|Mirg|ENSMUSG00000097391.2|miRNA containing gene 	ENSMUST00000182300.1|Mirg|ENSMUSG00000097391.2|miRNA containing gene
mm10_v2_chr12_-_111813834_111813858	0.224912	Nanog	ENSMUST00000021715.5|Xrcc3|ENSMUSG00000021287.6|X-ray repair complementing defective repair in Chinese hamster cells 3
mm10_v2_chr7_-_110769345_110769345	0.222478	Nanog	ENSMUST00000098108.2|B430319F04Rik|ENSMUSG00000073866.2|RIKEN cDNA B430319F04 gene
mm10_v2_chr12_+_109549157_109549301	0.221402	Nanog	ENSMUST00000128458.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3 	ENSMUST00000150851.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3
mm10_v2_chr13_+_111686303_111686351	0.221143	Nanog	ENSMUST00000047412.4|Mier3|ENSMUSG00000032727.7|mesoderm induction early response 1, family member 3 	ENSMUST00000109271.2|Mier3|ENSMUSG00000032727.7|mesoderm induction early response 1, family member 3
mm10_v2_chr15_+_102990576_102990622	0.218663	Nanog	ENSMUST00000001703.6|Hoxc8|ENSMUSG00000001657.6|homeobox C8
mm10_v2_chr1_+_50927511_50927543	0.21468	Nanog	ENSMUST00000081851.3|Tmeff2|ENSMUSG00000026109.8|transmembrane protein with EGF-like and two follistatin-like domains 2
mm10_v2_chr6_+_38551786_38551851	0.213909	Nanog	ENSMUST00000161227.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae)
mm10_v2_chr1_+_89454769_89454885	0.209202	Nanog	ENSMUST00000027521.8|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 	ENSMUST00000074945.5|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm10_v2_chr8_-_105568298_105568298	0.208403	Nanog	ENSMUST00000005849.5|Agrp|ENSMUSG00000005705.5|agouti related protein
mm10_v2_chrY_-_1245685_1245752	0.206988	Nanog	ENSMUST00000143286.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000137048.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000069309.7|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000139365.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome
mm10_v2_chr18_-_67245818_67245842	0.206271	Nanog	ENSMUST00000073054.3|Mppe1|ENSMUSG00000062526.3|metallophosphoesterase 1
mm10_v2_chr10_+_53337686_53337724	0.20112	Nanog	ENSMUST00000046221.6|Pln|ENSMUSG00000038583.6|phospholamban 	ENSMUST00000163319.1|Pln|ENSMUSG00000038583.6|phospholamban
mm10_v2_chr7_+_100706623_100706668	0.200607	Nanog	ENSMUST00000107042.1|Fam168a|ENSMUSG00000029461.9|family with sequence similarity 168, member A
mm10_v2_chr18_+_82554463_82554583	0.197162	Nanog	ENSMUST00000062446.7|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000102812.4|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000075372.5|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000080658.4|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000152071.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000114674.3|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000142850.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000133193.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000123251.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000153478.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000132369.1|Mbp|ENSMUSG00000041607.10|myelin basic protein
mm10_v2_chr3_+_114030532_114030571	0.193894	Nanog	ENSMUST00000123619.1|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1 	ENSMUST00000092155.5|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1
mm10_v2_chr2_+_127909058_127909058	0.191626	Nanog	ENSMUST00000110344.1|Acoxl|ENSMUSG00000027380.4|acyl-Coenzyme A oxidase-like
mm10_v2_chr13_-_19732929_19732954	0.189067	Nanog	ENSMUST00000151029.1|A530099J19Rik|ENSMUSG00000047462.8|RIKEN cDNA A530099J19 gene
mm10_v2_chr17_+_35439155_35439195	0.188353	Nanog	ENSMUST00000071951.6|H2-Q7|ENSMUSG00000060550.9|histocompatibility 2, Q region locus 7 	ENSMUST00000078205.7|H2-Q7|ENSMUSG00000060550.9|histocompatibility 2, Q region locus 7 	ENSMUST00000116598.3|H2-Q7|ENSMUSG00000060550.9|histocompatibility 2, Q region locus 7 	ENSMUST00000076256.7|H2-Q7|ENSMUSG00000060550.9|histocompatibility 2, Q region locus 7
mm10_v2_chr1_+_131962941_131962969	0.186634	Nanog	ENSMUST00000177943.1|Slc45a3|ENSMUSG00000026435.9|solute carrier family 45, member 3
mm10_v2_chr11_+_102885160_102885174	0.186169	Nanog	ENSMUST00000100369.3|Fam187a|ENSMUSG00000075510.3|family with sequence similarity 187, member A
mm10_v2_chr19_+_34008247_34008269	0.184883	Nanog	ENSMUST00000054260.6|Lipk|ENSMUSG00000024771.6|lipase, family member K
mm10_v2_chr10_-_115362191_115362262	0.182349	Nanog	ENSMUST00000092170.5|Tmem19|ENSMUSG00000069520.5|transmembrane protein 19
mm10_v2_chr8_-_120589304_120589304	0.182125	Nanog	ENSMUST00000034278.5|Gins2|ENSMUSG00000031821.5|GINS complex subunit 2 (Psf2 homolog)
mm10_v2_chr10_+_130322845_130322856	0.179128	Nanog	ENSMUST00000042586.8|Tespa1|ENSMUSG00000034833.9|thymocyte expressed, positive selection associated 1
mm10_v2_chr16_-_18622403_18622403	0.178353	Nanog	ENSMUST00000167388.1|Gp1bb|ENSMUSG00000050761.3|glycoprotein Ib, beta polypeptide
mm10_v2_chr18_+_24205303_24205348	0.178273	Nanog	ENSMUST00000000430.7|Galnt1|ENSMUSG00000000420.9|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
mm10_v2_chr9_+_110849507_110849538	0.176753	Nanog	ENSMUST00000119427.2|Prss46|ENSMUSG00000049719.8|protease, serine, 46
mm10_v2_chr4_-_49597425_49597493	0.174838	Nanog	ENSMUST00000150664.1|Tmem246|ENSMUSG00000039611.2|transmembrane protein 246
mm10_v2_chr2_-_31810580_31810580	0.174347	Nanog	ENSMUST00000057407.2|Qrfp|ENSMUSG00000043102.2|pyroglutamylated RFamide peptide
mm10_v2_chr10_-_61476937_61476937	0.170889	Nanog	ENSMUST00000051330.4|D830039M14Rik|ENSMUSG00000043126.4|RIKEN cDNA D830039M14 gene
mm10_v2_chr4_+_19818722_19818743	0.170159	Nanog	ENSMUST00000035890.7|Slc7a13|ENSMUSG00000041052.8|solute carrier family 7, (cationic amino acid transporter, y+ system) member 13
mm10_v2_chr7_-_90475971_90476003	0.169763	Nanog	ENSMUST00000032843.7|Tmem126b|ENSMUSG00000030614.7|transmembrane protein 126B
mm10_v2_chr7_-_89633124_89633124	0.168397	Nanog	ENSMUST00000172178.1|A230065N10Rik|ENSMUSG00000092071.1|RIKEN cDNA A230065N10 gene
mm10_v2_chr17_+_20945311_20945355	0.166911	Nanog	ENSMUST00000007708.7|Ppp2r1a|ENSMUSG00000007564.8|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform
mm10_v2_chr19_-_53464721_53464833	0.165637	Nanog	ENSMUST00000180489.1|5830416P10Rik|ENSMUSG00000097636.1|RIKEN cDNA 5830416P10 gene
mm10_v2_chr3_-_82876483_82876527	0.165549	Nanog	ENSMUST00000048647.7|Rbm46|ENSMUSG00000033882.9|RNA binding motif protein 46
mm10_v2_chr2_-_37703845_37703885	0.164753	Nanog	ENSMUST00000155237.1|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr14_-_20664562_20664580	0.162134	Nanog	ENSMUST00000119483.1|Synpo2l|ENSMUSG00000039376.7|synaptopodin 2-like
mm10_v2_chr9_+_55541148_55541209	0.160046	Nanog	ENSMUST00000034869.4|Isl2|ENSMUSG00000032318.6|insulin related protein 2 (islet 2)
mm10_v2_chr2_+_29060239_29060287	0.157284	Nanog	ENSMUST00000100237.3|Ttf1|ENSMUSG00000026803.11|transcription termination factor, RNA polymerase I
mm10_v2_chr19_-_45783512_45783558	0.155549	Nanog	ENSMUST00000026243.3|Mgea5|ENSMUSG00000025220.7|meningioma expressed antigen 5 (hyaluronidase)
mm10_v2_chr11_-_101095367_101095439	0.153742	Nanog	ENSMUST00000019447.8|Psmc3ip|ENSMUSG00000019303.8|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein
mm10_v2_chr1_+_74362108_74362156	0.153579	Nanog	ENSMUST00000097697.1|Gm216|ENSMUSG00000073650.2|predicted gene 216
mm10_v2_chr4_+_136310952_136310984	0.153388	Nanog	ENSMUST00000105850.1|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R 	ENSMUST00000148843.3|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R
mm10_v2_chr17_-_71752867_71752891	0.152147	Nanog	ENSMUST00000057405.7|BC027072|ENSMUSG00000044375.7|cDNA sequence BC027072
mm10_v2_chr3_+_94362444_94362444	0.147658	Nanog	ENSMUST00000169433.1|C2cd4d|ENSMUSG00000091648.1|C2 calcium-dependent domain containing 4D
mm10_v2_chr16_+_3872368_3872385	0.14521	Nanog	ENSMUST00000151988.1|Naa60|ENSMUSG00000005982.7|N(alpha)-acetyltransferase 60, NatF catalytic subunit
mm10_v2_chr3_-_69127098_69127113	0.1419	Nanog	ENSMUST00000029353.2|Kpna4|ENSMUSG00000027782.4|karyopherin (importin) alpha 4
mm10_v2_chr6_+_41354105_41354185	0.141378	Nanog	ENSMUST00000072103.5|Try10|ENSMUSG00000071521.3|trypsin 10
mm10_v2_chr9_+_44334685_44334715	0.141303	Nanog	ENSMUST00000052686.2|H2afx|ENSMUSG00000049932.2|H2A histone family, member X
mm10_v2_chr3_-_144849301_144849357	0.139693	Nanog	ENSMUST00000159989.1|Clca4|ENSMUSG00000037033.9|chloride channel calcium activated 4
mm10_v2_chr15_+_21111452_21111452	0.138229	Nanog	ENSMUST00000075132.6|Cdh12|ENSMUSG00000040452.8|cadherin 12
mm10_v2_chr2_+_130576170_130576176	0.137455	Nanog	ENSMUST00000028764.5|Oxt|ENSMUSG00000027301.7|oxytocin
mm10_v2_chr17_+_8849974_8850001	0.134686	Nanog	ENSMUST00000115720.1|Pde10a|ENSMUSG00000023868.9|phosphodiesterase 10A
mm10_v2_chr6_-_142473075_142473115	0.134524	Nanog	ENSMUST00000032371.7|Gys2|ENSMUSG00000030244.7|glycogen synthase 2
mm10_v2_chr5_-_100373484_100373527	0.133675	Nanog	ENSMUST00000182433.1|Sec31a|ENSMUSG00000035325.10|Sec31 homolog A (S. cerevisiae)
mm10_v2_chr2_+_155236529_155236599	0.132135	Nanog	ENSMUST00000109682.2|Dynlrb1|ENSMUSG00000047459.8|dynein light chain roadblock-type 1
mm10_v2_chr6_-_142008745_142008745	0.131959	Nanog	ENSMUST00000111832.1|Gm6614|ENSMUSG00000079263.2|predicted gene 6614
mm10_v2_chr2_+_3513035_3513074	0.131121	Nanog	ENSMUST00000036350.2|Cdnf|ENSMUSG00000039496.2|cerebral dopamine neurotrophic factor
mm10_v2_chr2_-_176149825_176149825	0.130188	Nanog	ENSMUST00000109049.3|Gm2004|ENSMUSG00000095648.1|predicted gene 2004 	ENSMUST00000179349.1|Gm2004|ENSMUSG00000095648.1|predicted gene 2004
mm10_v2_chr16_+_49057399_49057486	0.129746	Nanog	ENSMUST00000168680.1|Myh15|ENSMUSG00000092009.1|myosin, heavy chain 15
mm10_v2_chr16_-_32877723_32877766	0.128691	Nanog	ENSMUST00000119810.1|1700021K19Rik|ENSMUSG00000035629.11|RIKEN cDNA 1700021K19 gene
mm10_v2_chr3_+_65666223_65666259	0.127467	Nanog	ENSMUST00000099075.2|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1 	ENSMUST00000107848.1|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1 	ENSMUST00000161794.1|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1
mm10_v2_chr10_-_62422427_62422491	0.127265	Nanog	ENSMUST00000020277.8|Hkdc1|ENSMUSG00000020080.8|hexokinase domain containing 1
mm10_v2_chr18_-_15063560_15063617	0.126554	Nanog	ENSMUST00000168989.1|Kctd1|ENSMUSG00000036225.8|potassium channel tetramerisation domain containing 1
mm10_v2_chr9_-_71168657_71168683	0.126443	Nanog	ENSMUST00000113570.1|Aqp9|ENSMUSG00000032204.7|aquaporin 9
mm10_v2_chr4_+_101507947_101508032	0.125953	Nanog	ENSMUST00000149047.1|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6 	ENSMUST00000106929.3|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6
mm10_v2_chr15_-_50889043_50889054	0.123637	Nanog	ENSMUST00000183997.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human) 	ENSMUST00000183757.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr6_-_120531289_120531328	0.122975	Nanog	ENSMUST00000075303.6|Cecr5|ENSMUSG00000058979.6|cat eye syndrome chromosome region, candidate 5
mm10_v2_chr17_-_51826562_51826601	0.119945	Nanog	ENSMUST00000024720.4|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000129667.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000156051.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000169480.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000148559.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr9_-_15301555_15301607	0.116474	Nanog	ENSMUST00000034414.8|4931406C07Rik|ENSMUSG00000031938.8|RIKEN cDNA 4931406C07 gene
mm10_v2_chr16_+_18811772_18811832	0.115763	Nanog	ENSMUST00000168822.1|Ufd1l|ENSMUSG00000005262.6|ubiquitin fusion degradation 1 like 	ENSMUST00000115578.3|Ufd1l|ENSMUSG00000005262.6|ubiquitin fusion degradation 1 like
mm10_v2_chr12_+_31438209_31438227	0.115151	Nanog	ENSMUST00000001254.5|Slc26a3|ENSMUSG00000001225.6|solute carrier family 26, member 3
mm10_v2_chr5_+_57718021_57718104	0.111367	Nanog	ENSMUST00000094783.3|Pcdh7|ENSMUSG00000029108.8|protocadherin 7 	ENSMUST00000068110.7|Pcdh7|ENSMUSG00000029108.8|protocadherin 7
mm10_v2_chr1_+_60909148_60909171	0.111106	Nanog	ENSMUST00000097720.3|Ctla4|ENSMUSG00000026011.7|cytotoxic T-lymphocyte-associated protein 4
mm10_v2_chr11_+_98701263_98701346	0.108199	Nanog	ENSMUST00000038886.2|Csf3|ENSMUSG00000038067.2|colony stimulating factor 3 (granulocyte)
mm10_v2_chr19_-_8218832_8218899	0.10772	Nanog	ENSMUST00000113298.2|Slc22a29|ENSMUSG00000075044.5|solute carrier family 22. member 29
mm10_v2_chr2_+_115581667_115581743	0.106502	Nanog	ENSMUST00000166472.1|BC052040|ENSMUSG00000040282.7|cDNA sequence BC052040 	ENSMUST00000110918.2|BC052040|ENSMUSG00000040282.7|cDNA sequence BC052040
mm10_v2_chr2_-_38714491_38714542	0.106083	Nanog	ENSMUST00000028084.4|Nr5a1|ENSMUSG00000026751.8|nuclear receptor subfamily 5, group A, member 1
mm10_v2_chr16_-_3872378_3872411	0.103613	Nanog	ENSMUST00000090522.4|Zfp597|ENSMUSG00000039789.7|zinc finger protein 597
mm10_v2_chr17_-_25833361_25833402	0.103432	Nanog	ENSMUST00000044911.8|Stub1|ENSMUSG00000039615.8|STIP1 homology and U-Box containing protein 1
mm10_v2_chr1_-_60566708_60566769	0.102644	Nanog	ENSMUST00000027168.5|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000090293.4|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000140485.1|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
mm10_v2_chr16_+_87454976_87454987	0.100141	Nanog	ENSMUST00000119504.1|Usp16|ENSMUSG00000025616.8|ubiquitin specific peptidase 16 	ENSMUST00000131356.1|Usp16|ENSMUSG00000025616.8|ubiquitin specific peptidase 16
mm10_v2_chr9_+_108490676_108490692	0.0998454	Nanog	ENSMUST00000178075.1|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000085044.7|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000166103.2|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000006854.7|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19
mm10_v2_chr2_+_155236602_155236617	0.0967537	Nanog	ENSMUST00000150602.1|Dynlrb1|ENSMUSG00000047459.8|dynein light chain roadblock-type 1
mm10_v2_chr16_+_19760902_19761054	0.0961605	Nanog	ENSMUST00000119468.1|B3gnt5|ENSMUSG00000022686.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
mm10_v2_chr10_-_116896879_116896956	0.0942645	Nanog	ENSMUST00000048229.7|Myrfl|ENSMUSG00000034057.7|myelin regulatory factor-like
mm10_v2_chr6_+_41302265_41302279	0.0913749	Nanog	ENSMUST00000031913.4|Try4|ENSMUSG00000054106.7|trypsin 4
mm10_v2_chr12_-_40037387_40037429	0.0891279	Nanog	ENSMUST00000146905.1|Arl4a|ENSMUSG00000047446.12|ADP-ribosylation factor-like 4A
mm10_v2_chr8_-_61902669_61902713	0.0889798	Nanog	ENSMUST00000121785.1|Palld|ENSMUSG00000058056.9|palladin, cytoskeletal associated protein 	ENSMUST00000034057.7|Palld|ENSMUSG00000058056.9|palladin, cytoskeletal associated protein
mm10_v2_chr5_+_63812447_63812538	0.0880365	Nanog	ENSMUST00000081747.3|0610040J01Rik|ENSMUSG00000060512.3|RIKEN cDNA 0610040J01 gene
mm10_v2_chr15_+_89089073_89089111	0.0870085	Nanog	ENSMUST00000082439.4|Selo|ENSMUSG00000035757.10|selenoprotein O
mm10_v2_chr9_-_52168111_52168111	0.0867448	Nanog	ENSMUST00000165519.1|Zc3h12c|ENSMUSG00000035164.7|zinc finger CCCH type containing 12C
mm10_v2_chr7_-_98656530_98656600	0.0862301	Nanog	ENSMUST00000038359.4|2210018M11Rik|ENSMUSG00000035401.8|RIKEN cDNA 2210018M11 gene
mm10_v2_chr11_-_58552237_58552237	0.0802016	Nanog	ENSMUST00000073933.1|Olfr328|ENSMUSG00000057654.4|olfactory receptor 328
mm10_v2_chr19_-_46395722_46395756	0.0787713	Nanog	ENSMUST00000040270.4|Actr1a|ENSMUSG00000025228.4|ARP1 actin-related protein 1A, centractin alpha
mm10_v2_chr19_-_46962301_46962351	0.0742703	Nanog	ENSMUST00000168536.1|Nt5c2|ENSMUSG00000025041.10|5'-nucleotidase, cytosolic II
mm10_v2_chr2_+_110721587_110721619	0.0731108	Nanog	ENSMUST00000111017.2|Muc15|ENSMUSG00000050808.7|mucin 15
mm10_v2_chr4_-_83052229_83052339	0.0713872	Nanog	ENSMUST00000107230.1|Frem1|ENSMUSG00000059049.8|Fras1 related extracellular matrix protein 1
mm10_v2_chr11_-_78422217_78422240	0.0713135	Nanog	ENSMUST00000001122.5|Slc13a2|ENSMUSG00000001095.5|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2
mm10_v2_chr17_-_23835743_23835743	0.0696354	Nanog	ENSMUST00000059906.6|Prss33|ENSMUSG00000049620.8|protease, serine, 33
mm10_v2_chr3_-_102782708_102782715	0.0645982	Nanog	ENSMUST00000029450.3|Tshb|ENSMUSG00000027857.4|thyroid stimulating hormone, beta subunit 	ENSMUST00000172026.1|Tshb|ENSMUSG00000027857.4|thyroid stimulating hormone, beta subunit 	ENSMUST00000170856.1|Tshb|ENSMUSG00000027857.4|thyroid stimulating hormone, beta subunit
mm10_v2_chr11_+_49609263_49609263	0.0630203	Nanog	ENSMUST00000020617.2|Flt4|ENSMUSG00000020357.3|FMS-like tyrosine kinase 4
mm10_v2_chr7_+_25267669_25267723	0.0625535	Nanog	ENSMUST00000169266.1|Cic|ENSMUSG00000005442.7|capicua homolog (Drosophila)
mm10_v2_chr4_+_101507855_101507871	0.0611153	Nanog	ENSMUST00000038207.5|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6
mm10_v2_chr9_-_103365769_103365785	0.0609273	Nanog	ENSMUST00000035484.4|Cdv3|ENSMUSG00000032803.8|carnitine deficiency-associated gene expressed in ventricle 3 	ENSMUST00000072249.6|Cdv3|ENSMUSG00000032803.8|carnitine deficiency-associated gene expressed in ventricle 3
mm10_v2_chr10_+_81183000_81183048	0.0601573	Nanog	ENSMUST00000178422.1|Dapk3|ENSMUSG00000034974.6|death-associated protein kinase 3
mm10_v2_chr4_+_116708467_116708509	0.0589589	Nanog	ENSMUST00000030452.6|Ccdc163|ENSMUSG00000028689.8|coiled-coil domain containing 163
mm10_v2_chrX_+_48146436_48146482	0.0580008	Nanog	ENSMUST00000033427.6|Sash3|ENSMUSG00000031101.6|SAM and SH3 domain containing 3
mm10_v2_chr1_+_93512079_93512125	0.0574176	Nanog	ENSMUST00000120301.1|Farp2|ENSMUSG00000034066.7|FERM, RhoGEF and pleckstrin domain protein 2 	ENSMUST00000041983.4|Farp2|ENSMUSG00000034066.7|FERM, RhoGEF and pleckstrin domain protein 2 	ENSMUST00000122402.1|Farp2|ENSMUSG00000034066.7|FERM, RhoGEF and pleckstrin domain protein 2
mm10_v2_chr2_+_110721632_110721648	0.0547564	Nanog	ENSMUST00000090332.4|Muc15|ENSMUSG00000050808.7|mucin 15
mm10_v2_chr11_-_120549695_120549728	0.0544347	Nanog	ENSMUST00000034913.4|Fam195b|ENSMUSG00000061111.8|family with sequence similarity 195, member B
mm10_v2_chr3_-_152193803_152193831	0.0538741	Nanog	ENSMUST00000050073.6|Dnajb4|ENSMUSG00000028035.7|DnaJ (Hsp40) homolog, subfamily B, member 4
mm10_v2_chr6_-_39725448_39725478	0.0514154	Nanog	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr7_+_140176061_140176061	0.0507264	Nanog	ENSMUST00000055890.5|Olfr523|ENSMUSG00000051051.5|olfactory receptor 523
mm10_v2_chr15_+_44457522_44457553	0.0497451	Nanog	ENSMUST00000166957.1|Pkhd1l1|ENSMUSG00000038725.5|polycystic kidney and hepatic disease 1-like 1 	ENSMUST00000038336.5|Pkhd1l1|ENSMUSG00000038725.5|polycystic kidney and hepatic disease 1-like 1
mm10_v2_chr6_+_38551334_38551493	0.0476308	Nanog	ENSMUST00000163047.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae) 	ENSMUST00000161538.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae) 	ENSMUST00000057692.4|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae)
mm10_v2_chrX_+_7822289_7822289	0.0471793	Nanog	ENSMUST00000009875.4|Kcnd1|ENSMUSG00000009731.4|potassium voltage-gated channel, Shal-related family, member 1
mm10_v2_chr16_-_23520579_23520673	0.046388	Nanog	ENSMUST00000089883.5|Masp1|ENSMUSG00000022887.8|mannan-binding lectin serine peptidase 1
mm10_v2_chr17_-_43543639_43543639	0.0444641	Nanog	ENSMUST00000178772.1|Ankrd66|ENSMUSG00000096140.1|ankyrin repeat domain 66
mm10_v2_chr19_+_6046576_6046662	0.0438571	Nanog	ENSMUST00000138532.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin 	ENSMUST00000129081.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin 	ENSMUST00000156550.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin
mm10_v2_chr19_+_34100943_34100983	0.0437429	Nanog	ENSMUST00000025685.6|Lipm|ENSMUSG00000056078.5|lipase, family member M
mm10_v2_chr10_+_42502197_42502290	0.0416466	Nanog	ENSMUST00000105499.1|Snx3|ENSMUSG00000019804.6|sorting nexin 3
mm10_v2_chr14_+_56887795_56887795	0.0377672	Nanog	ENSMUST00000022511.8|Zmym2|ENSMUSG00000021945.8|zinc finger, MYM-type 2
mm10_v2_chr15_-_13173607_13173644	0.0371361	Nanog	ENSMUST00000036439.4|Cdh6|ENSMUSG00000039385.4|cadherin 6
mm10_v2_chrX_+_56963325_56963325	0.0334995	Nanog	ENSMUST00000096431.3|Gpr112|ENSMUSG00000053852.5|G protein-coupled receptor 112
mm10_v2_chr10_+_59403644_59403669	0.033322	Nanog	ENSMUST00000009790.7|Pla2g12b|ENSMUSG00000009646.7|phospholipase A2, group XIIB
mm10_v2_chr11_-_107337556_107337637	0.0313138	Nanog	ENSMUST00000040380.6|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr7_+_59228743_59228769	0.030306	Nanog	ENSMUST00000107537.1|Ube3a|ENSMUSG00000025326.8|ubiquitin protein ligase E3A
mm10_v2_chr7_-_115846080_115846112	0.0290687	Nanog	ENSMUST00000166207.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr19_-_32196393_32196428	0.0281432	Nanog	ENSMUST00000151822.1|Sgms1|ENSMUSG00000040451.11|sphingomyelin synthase 1
mm10_v2_chr9_-_58159201_58159239	0.0255562	Nanog	ENSMUST00000041477.7|Islr|ENSMUSG00000037206.8|immunoglobulin superfamily containing leucine-rich repeat
mm10_v2_chr16_+_13671980_13672032	0.0245347	Nanog	ENSMUST00000069281.7|Bfar|ENSMUSG00000022684.8|bifunctional apoptosis regulator
mm10_v2_chr1_+_172555932_172555942	0.0240795	Nanog	ENSMUST00000061835.3|Vsig8|ENSMUSG00000049598.3|V-set and immunoglobulin domain containing 8
mm10_v2_chrX_+_92489949_92489949	0.0225199	Nanog	ENSMUST00000096371.2|Gm5941|ENSMUSG00000071726.2|predicted gene 5941
mm10_v2_chr13_-_51567084_51567084	0.020653	Nanog	ENSMUST00000021898.5|Shc3|ENSMUSG00000021448.6|src homology 2 domain-containing transforming protein C3
mm10_v2_chr2_-_116067391_116067444	0.018603	Nanog	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr5_-_103977404_103977415	0.0174713	Nanog	ENSMUST00000112803.2|Hsd17b13|ENSMUSG00000034528.9|hydroxysteroid (17-beta) dehydrogenase 13
mm10_v2_chr5_-_103977326_103977356	0.013466	Nanog	ENSMUST00000120320.1|Hsd17b13|ENSMUSG00000034528.9|hydroxysteroid (17-beta) dehydrogenase 13
mm10_v2_chr14_-_26534870_26534931	0.0132892	Nanog	ENSMUST00000139075.1|Slmap|ENSMUSG00000021870.11|sarcolemma associated protein 	ENSMUST00000102956.1|Slmap|ENSMUSG00000021870.11|sarcolemma associated protein
mm10_v2_chr7_-_141655319_141655395	0.0129897	Nanog	ENSMUST00000062451.7|Muc6|ENSMUSG00000048191.9|mucin 6, gastric
mm10_v2_chr12_+_84642896_84642896	0.0125809	Nanog	ENSMUST00000095551.4|Vrtn|ENSMUSG00000071235.5|vertebrae development associated
mm10_v2_chr17_+_40811089_40811133	0.00995364	Nanog	ENSMUST00000024721.7|Rhag|ENSMUSG00000023926.7|Rhesus blood group-associated A glycoprotein
mm10_v2_chr12_-_101958148_101958246	0.00902783	Nanog	ENSMUST00000159883.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000160251.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000161011.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000021606.5|Atxn3|ENSMUSG00000021189.5|ataxin 3
mm10_v2_chr7_+_110627650_110627669	0.00588968	Nanog	ENSMUST00000033054.8|Adm|ENSMUSG00000030790.8|adrenomedullin
mm10_v2_chr9_+_7184514_7184567	0.00447553	Nanog	ENSMUST00000034499.8|Dcun1d5|ENSMUSG00000032002.9|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)
mm10_v2_chr2_-_120057497_120057497	0.00376106	Nanog	ENSMUST00000156159.1|Sptbn5|ENSMUSG00000074899.4|spectrin beta, non-erythrocytic 5
mm10_v2_chr8_-_83594440_83594491	0.00370631	Nanog	ENSMUST00000019382.9|Tecr|ENSMUSG00000031708.9|trans-2,3-enoyl-CoA reductase 	ENSMUST00000165740.1|Tecr|ENSMUSG00000031708.9|trans-2,3-enoyl-CoA reductase
mm10_v2_chr1_-_87101590_87101617	0.00297461	Nanog	ENSMUST00000113270.2|Alpi|ENSMUSG00000079440.2|alkaline phosphatase, intestinal
mm10_v2_chr10_+_69785507_69785525	0.000365469	Nanog	ENSMUST00000182993.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr4_+_154964117_154964147	1.5947e-05	Nanog	ENSMUST00000030931.4|Pank4|ENSMUSG00000029056.7|pantothenate kinase 4 	ENSMUST00000070953.4|Pank4|ENSMUSG00000029056.7|pantothenate kinase 4
