mm10_v2_chr11_-_87108656_87108719	0.336814	Nkx1-1_Nkx1-2	ENSMUST00000051395.8|Prr11|ENSMUSG00000020493.8|proline rich 11
mm10_v2_chr19_-_55241236_55241236	0.200745	Nkx1-1_Nkx1-2	ENSMUST00000069183.6|Gucy2g|ENSMUSG00000055523.6|guanylate cyclase 2g
mm10_v2_chr18_+_4993795_4993819	0.189466	Nkx1-1_Nkx1-2	ENSMUST00000153016.1|Svil|ENSMUSG00000024236.11|supervillin
mm10_v2_chr10_-_88146867_88146941	0.143011	Nkx1-1_Nkx1-2	ENSMUST00000164121.1|Parpbp|ENSMUSG00000035365.9|PARP1 binding protein 	ENSMUST00000164803.1|Parpbp|ENSMUSG00000035365.9|PARP1 binding protein 	ENSMUST00000168163.1|Parpbp|ENSMUSG00000035365.9|PARP1 binding protein 	ENSMUST00000048518.9|Parpbp|ENSMUSG00000035365.9|PARP1 binding protein
mm10_v2_chr9_-_54661870_54661912	0.140783	Nkx1-1_Nkx1-2	ENSMUST00000034822.5|Acsbg1|ENSMUSG00000032281.5|acyl-CoA synthetase bubblegum family member 1
mm10_v2_chr3_+_94372794_94372872	0.13721	Nkx1-1_Nkx1-2	ENSMUST00000029795.3|Rorc|ENSMUSG00000028150.8|RAR-related orphan receptor gamma
mm10_v2_chr2_+_119047116_119047121	0.123894	Nkx1-1_Nkx1-2	ENSMUST00000152380.1|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5 	ENSMUST00000099542.2|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5
mm10_v2_chr19_-_41933276_41933319	0.118858	Nkx1-1_Nkx1-2	ENSMUST00000075280.4|Exosc1|ENSMUSG00000034321.7|exosome component 1 	ENSMUST00000112123.2|Exosc1|ENSMUSG00000034321.7|exosome component 1
mm10_v2_chr11_+_43682038_43682060	0.115717	Nkx1-1_Nkx1-2	ENSMUST00000094294.4|Pwwp2a|ENSMUSG00000044950.7|PWWP domain containing 2A
mm10_v2_chr19_+_60755947_60755987	0.111145	Nkx1-1_Nkx1-2	ENSMUST00000088237.4|Nanos1|ENSMUSG00000072437.3|nanos homolog 1 (Drosophila)
mm10_v2_chr3_+_55782500_55782521	0.110709	Nkx1-1_Nkx1-2	ENSMUST00000075422.4|Mab21l1|ENSMUSG00000056947.4|mab-21-like 1 (C. elegans)
mm10_v2_chr17_+_42315947_42315947	0.108323	Nkx1-1_Nkx1-2	ENSMUST00000048691.4|Ptchd4|ENSMUSG00000042256.4|patched domain containing 4
mm10_v2_chr2_+_119047129_119047159	0.100965	Nkx1-1_Nkx1-2	ENSMUST00000153300.1|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5 	ENSMUST00000028799.5|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5
mm10_v2_chr14_-_6266620_6266620	0.100648	Nkx1-1_Nkx1-2	ENSMUST00000096172.5|Gm3411|ENSMUSG00000079396.3|predicted gene 3411
mm10_v2_chr14_-_59365410_59365461	0.0917868	Nkx1-1_Nkx1-2	ENSMUST00000161031.1|Phf11d|ENSMUSG00000068245.8|PHD finger protein 11D 	ENSMUST00000160425.1|Phf11d|ENSMUSG00000068245.8|PHD finger protein 11D
mm10_v2_chr14_-_59365465_59365487	0.0885073	Nkx1-1_Nkx1-2	ENSMUST00000095157.4|Phf11d|ENSMUSG00000068245.8|PHD finger protein 11D
mm10_v2_chr9_-_54661666_54661716	0.0874562	Nkx1-1_Nkx1-2	ENSMUST00000128624.1|Acsbg1|ENSMUSG00000032281.5|acyl-CoA synthetase bubblegum family member 1
mm10_v2_chr14_+_46760526_46760557	0.0844626	Nkx1-1_Nkx1-2	ENSMUST00000067426.4|Cdkn3|ENSMUSG00000037628.9|cyclin-dependent kinase inhibitor 3
mm10_v2_chr9_-_20959785_20959888	0.0827165	Nkx1-1_Nkx1-2	ENSMUST00000177754.1|Dnmt1|ENSMUSG00000004099.9|DNA methyltransferase (cytosine-5) 1
mm10_v2_chr5_-_150518164_150518164	0.0806773	Nkx1-1_Nkx1-2	ENSMUST00000118769.1|Zar1l|ENSMUSG00000056586.8|zygote arrest 1-like
mm10_v2_chrX_-_60893430_60893440	0.0775377	Nkx1-1_Nkx1-2	ENSMUST00000135107.2|Sox3|ENSMUSG00000045179.8|SRY-box containing gene 3
mm10_v2_chr9_-_100486788_100486788	0.075161	Nkx1-1_Nkx1-2	ENSMUST00000098458.3|Il20rb|ENSMUSG00000044244.12|interleukin 20 receptor beta
mm10_v2_chr19_+_5490475_5490487	0.0732908	Nkx1-1_Nkx1-2	ENSMUST00000116560.2|Cfl1|ENSMUSG00000056201.6|cofilin 1, non-muscle
mm10_v2_chr2_+_154548888_154548932	0.0655524	Nkx1-1_Nkx1-2	ENSMUST00000045116.4|1700003F12Rik|ENSMUSG00000038523.4|RIKEN cDNA 1700003F12 gene 	ENSMUST00000109709.3|1700003F12Rik|ENSMUSG00000038523.4|RIKEN cDNA 1700003F12 gene
mm10_v2_chrY_+_90785442_90785586	0.0632941	Nkx1-1_Nkx1-2	ENSMUST00000177591.1|Erdr1|ENSMUSG00000096768.1|erythroid differentiation regulator 1 	ENSMUST00000177671.1|Erdr1|ENSMUSG00000096768.1|erythroid differentiation regulator 1 	ENSMUST00000179077.1|Erdr1|ENSMUSG00000096768.1|erythroid differentiation regulator 1
mm10_v2_chr11_+_116843278_116843278	0.0615126	Nkx1-1_Nkx1-2	ENSMUST00000106370.3|Mettl23|ENSMUSG00000090266.4|methyltransferase like 23
mm10_v2_chr5_+_104202609_104202624	0.059993	Nkx1-1_Nkx1-2	ENSMUST00000066708.5|Dmp1|ENSMUSG00000029307.6|dentin matrix protein 1
mm10_v2_chr7_-_38019505_38019552	0.0593075	Nkx1-1_Nkx1-2	ENSMUST00000085513.4|Uri1|ENSMUSG00000030421.8|URI1, prefoldin-like chaperone
mm10_v2_chr2_-_45112890_45113010	0.0577994	Nkx1-1_Nkx1-2	ENSMUST00000076836.6|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr12_-_4769217_4769267	0.0554167	Nkx1-1_Nkx1-2	ENSMUST00000053458.5|Fam228b|ENSMUSG00000050545.8|family with sequence similarity 228, member B
mm10_v2_chr13_+_75967704_75967753	0.0529818	Nkx1-1_Nkx1-2	ENSMUST00000022081.1|Spata9|ENSMUSG00000021590.6|spermatogenesis associated 9
mm10_v2_chr11_+_43681998_43682036	0.0525727	Nkx1-1_Nkx1-2	ENSMUST00000061070.5|Pwwp2a|ENSMUSG00000044950.7|PWWP domain containing 2A
mm10_v2_chr11_+_104577281_104577387	0.0502098	Nkx1-1_Nkx1-2	ENSMUST00000106956.3|Myl4|ENSMUSG00000061086.6|myosin, light polypeptide 4
mm10_v2_chr1_+_54250673_54250699	0.0499612	Nkx1-1_Nkx1-2	ENSMUST00000027128.4|Ccdc150|ENSMUSG00000025983.5|coiled-coil domain containing 150
mm10_v2_chrX_+_106015699_106015759	0.0484798	Nkx1-1_Nkx1-2	ENSMUST00000033582.4|Cox7b|ENSMUSG00000031231.4|cytochrome c oxidase subunit VIIb
mm10_v2_chr9_-_107872403_107872422	0.0480982	Nkx1-1_Nkx1-2	ENSMUST00000183035.1|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chr5_-_34660068_34660148	0.047735	Nkx1-1_Nkx1-2	ENSMUST00000041364.9|Nop14|ENSMUSG00000036693.9|NOP14 nucleolar protein
mm10_v2_chr4_-_141599835_141600032	0.0475564	Nkx1-1_Nkx1-2	ENSMUST00000141518.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000127455.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000105784.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000147785.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1
mm10_v2_chr5_-_137072254_137072277	0.0466742	Nkx1-1_Nkx1-2	ENSMUST00000077523.3|Serpine1|ENSMUSG00000037411.4|serine (or cysteine) peptidase inhibitor, clade E, member 1 	ENSMUST00000041388.4|Serpine1|ENSMUSG00000037411.4|serine (or cysteine) peptidase inhibitor, clade E, member 1
mm10_v2_chr16_+_23146536_23146646	0.0462457	Nkx1-1_Nkx1-2	ENSMUST00000023593.5|Adipoq|ENSMUSG00000022878.5|adiponectin, C1Q and collagen domain containing 	ENSMUST00000171309.1|Adipoq|ENSMUSG00000022878.5|adiponectin, C1Q and collagen domain containing
mm10_v2_chr1_-_144545320_144545320	0.0440219	Nkx1-1_Nkx1-2	ENSMUST00000184189.1|Rgs21|ENSMUSG00000098509.1|regulator of G-protein signalling 21
mm10_v2_chr10_+_88147061_88147076	0.0440149	Nkx1-1_Nkx1-2	ENSMUST00000169309.1|Nup37|ENSMUSG00000035351.9|nucleoporin 37
mm10_v2_chr18_+_24603952_24603972	0.0426714	Nkx1-1_Nkx1-2	ENSMUST00000025120.6|Elp2|ENSMUSG00000024271.7|elongator acetyltransferase complex subunit 2
mm10_v2_chr10_+_128337761_128337832	0.0426252	Nkx1-1_Nkx1-2	ENSMUST00000005826.7|Cs|ENSMUSG00000005683.7|citrate synthase
mm10_v2_chr19_+_41933464_41933540	0.0425218	Nkx1-1_Nkx1-2	ENSMUST00000026154.7|Zdhhc16|ENSMUSG00000025157.7|zinc finger, DHHC domain containing 16
mm10_v2_chr2_-_69712461_69712606	0.0393053	Nkx1-1_Nkx1-2	ENSMUST00000102706.3|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1 	ENSMUST00000073152.6|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1
mm10_v2_chr18_+_12741324_12741355	0.0386572	Nkx1-1_Nkx1-2	ENSMUST00000115857.2|Cabyr|ENSMUSG00000024430.7|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 	ENSMUST00000121018.1|Cabyr|ENSMUSG00000024430.7|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 	ENSMUST00000119108.1|Cabyr|ENSMUSG00000024430.7|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)
mm10_v2_chr6_+_145934113_145934136	0.0382696	Nkx1-1_Nkx1-2	ENSMUST00000032383.7|Sspn|ENSMUSG00000030255.7|sarcospan
mm10_v2_chr11_+_87109221_87109239	0.0381017	Nkx1-1_Nkx1-2	ENSMUST00000020794.5|Ska2|ENSMUSG00000020492.5|spindle and kinetochore associated complex subunit 2
mm10_v2_chr17_-_48432723_48432741	0.0371695	Nkx1-1_Nkx1-2	ENSMUST00000046549.3|Apobec2|ENSMUSG00000040694.3|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2
mm10_v2_chr7_+_101896817_101896961	0.0368628	Nkx1-1_Nkx1-2	ENSMUST00000143835.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr8_+_40354303_40354303	0.036523	Nkx1-1_Nkx1-2	ENSMUST00000136835.1|Micu3|ENSMUSG00000039478.9|mitochondrial calcium uptake family, member 3
mm10_v2_chr5_+_138187485_138187521	0.0355953	Nkx1-1_Nkx1-2	ENSMUST00000110934.2|Cnpy4|ENSMUSG00000036968.9|canopy 4 homolog (zebrafish)
mm10_v2_chrY_+_90784738_90784738	0.0351758	Nkx1-1_Nkx1-2	ENSMUST00000179483.1|Erdr1|ENSMUSG00000096768.1|erythroid differentiation regulator 1
mm10_v2_chr10_+_88146992_88147037	0.0350109	Nkx1-1_Nkx1-2	ENSMUST00000052355.7|Nup37|ENSMUSG00000035351.9|nucleoporin 37
mm10_v2_chr11_+_104576965_104576985	0.0347544	Nkx1-1_Nkx1-2	ENSMUST00000106957.1|Myl4|ENSMUSG00000061086.6|myosin, light polypeptide 4
mm10_v2_chr5_-_84417359_84417389	0.0344326	Nkx1-1_Nkx1-2	ENSMUST00000113401.1|Epha5|ENSMUSG00000029245.10|Eph receptor A5
mm10_v2_chr9_-_44113470_44113528	0.0337476	Nkx1-1_Nkx1-2	ENSMUST00000056328.5|Rnf26|ENSMUSG00000053128.8|ring finger protein 26
mm10_v2_chr11_-_43747963_43748015	0.0301838	Nkx1-1_Nkx1-2	ENSMUST00000048578.2|Ttc1|ENSMUSG00000041278.4|tetratricopeptide repeat domain 1 	ENSMUST00000109278.1|Ttc1|ENSMUSG00000041278.4|tetratricopeptide repeat domain 1
mm10_v2_chr4_-_132463873_132463929	0.029809	Nkx1-1_Nkx1-2	ENSMUST00000102567.3|Med18|ENSMUSG00000066042.4|mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)
mm10_v2_chr5_+_134932351_134932406	0.0294444	Nkx1-1_Nkx1-2	ENSMUST00000047196.7|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000111221.2|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000111219.1|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000068617.5|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000111218.1|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000136246.1|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human)
mm10_v2_chr5_+_143909964_143910057	0.02919	Nkx1-1_Nkx1-2	ENSMUST00000148011.1|Pms2|ENSMUSG00000079109.5|postmeiotic segregation increased 2 (S. cerevisiae) 	ENSMUST00000110709.3|Pms2|ENSMUSG00000079109.5|postmeiotic segregation increased 2 (S. cerevisiae)
mm10_v2_chr16_-_16359016_16359040	0.0286762	Nkx1-1_Nkx1-2	ENSMUST00000023477.7|Dnm1l|ENSMUSG00000022789.8|dynamin 1-like 	ENSMUST00000096229.3|Dnm1l|ENSMUSG00000022789.8|dynamin 1-like 	ENSMUST00000115749.1|Dnm1l|ENSMUSG00000022789.8|dynamin 1-like
mm10_v2_chr14_+_25980039_25980039	0.026396	Nkx1-1_Nkx1-2	ENSMUST00000173155.1|Duxbl1|ENSMUSG00000048502.8|double homeobox B-like 1
mm10_v2_chr12_+_4769375_4769451	0.0254712	Nkx1-1_Nkx1-2	ENSMUST00000178879.1|Pfn4|ENSMUSG00000020639.7|profilin family, member 4
mm10_v2_chr2_+_36230426_36230491	0.0238905	Nkx1-1_Nkx1-2	ENSMUST00000062069.5|Ptgs1|ENSMUSG00000047250.7|prostaglandin-endoperoxide synthase 1
mm10_v2_chr14_-_52104015_52104028	0.0237917	Nkx1-1_Nkx1-2	ENSMUST00000111610.4|Hnrnpc|ENSMUSG00000060373.8|heterogeneous nuclear ribonucleoprotein C 	ENSMUST00000164655.1|Hnrnpc|ENSMUSG00000060373.8|heterogeneous nuclear ribonucleoprotein C
mm10_v2_chr7_-_24724237_24724237	0.0234337	Nkx1-1_Nkx1-2	ENSMUST00000081657.4|Gm4763|ENSMUSG00000058717.7|predicted gene 4763
mm10_v2_chr2_-_165388245_165388315	0.022959	Nkx1-1_Nkx1-2	ENSMUST00000103084.3|Zfp334|ENSMUSG00000017667.9|zinc finger protein 334
mm10_v2_chr10_+_116301374_116301428	0.0218563	Nkx1-1_Nkx1-2	ENSMUST00000092167.5|Ptprb|ENSMUSG00000020154.9|protein tyrosine phosphatase, receptor type, B
mm10_v2_chr5_+_138116903_138117041	0.0191243	Nkx1-1_Nkx1-2	ENSMUST00000062350.8|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110961.2|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000080732.3|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110960.2|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000142185.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000136425.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110959.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21
mm10_v2_chr7_-_27195727_27195768	0.0190418	Nkx1-1_Nkx1-2	ENSMUST00000163311.2|Snrpa|ENSMUSG00000061479.9|small nuclear ribonucleoprotein polypeptide A 	ENSMUST00000126211.1|Snrpa|ENSMUSG00000061479.9|small nuclear ribonucleoprotein polypeptide A
mm10_v2_chr7_+_101896340_101896431	0.0189579	Nkx1-1_Nkx1-2	ENSMUST00000035395.7|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000106973.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000144207.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr1_+_172555932_172555942	0.0188049	Nkx1-1_Nkx1-2	ENSMUST00000061835.3|Vsig8|ENSMUSG00000049598.3|V-set and immunoglobulin domain containing 8
mm10_v2_chr12_+_4769278_4769338	0.0187744	Nkx1-1_Nkx1-2	ENSMUST00000020967.4|Pfn4|ENSMUSG00000020639.7|profilin family, member 4
mm10_v2_chr12_+_111039334_111039400	0.0181465	Nkx1-1_Nkx1-2	ENSMUST00000084968.7|Rcor1|ENSMUSG00000037896.11|REST corepressor 1
mm10_v2_chr1_-_172027269_172027313	0.0181232	Nkx1-1_Nkx1-2	ENSMUST00000027837.6|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila) 	ENSMUST00000111264.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr14_-_8666236_8666279	0.0181195	Nkx1-1_Nkx1-2	ENSMUST00000102996.3|4930452B06Rik|ENSMUSG00000021747.11|RIKEN cDNA 4930452B06 gene
mm10_v2_chr19_+_8802486_8802530	0.0180496	Nkx1-1_Nkx1-2	ENSMUST00000172175.1|Zbtb3|ENSMUSG00000071661.6|zinc finger and BTB domain containing 3
mm10_v2_chr4_-_119294520_119294604	0.0175023	Nkx1-1_Nkx1-2	ENSMUST00000079644.6|Ybx1|ENSMUSG00000028639.8|Y box protein 1
mm10_v2_chrM_+_8600_8616	0.0174953	Nkx1-1_Nkx1-2	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm10_v2_chr4_+_43493345_43493430	0.0170029	Nkx1-1_Nkx1-2	ENSMUST00000030181.5|Ccdc107|ENSMUSG00000028461.6|coiled-coil domain containing 107 	ENSMUST00000107922.2|Ccdc107|ENSMUSG00000028461.6|coiled-coil domain containing 107
mm10_v2_chr19_-_29367294_29367309	0.0166449	Nkx1-1_Nkx1-2	ENSMUST00000138051.1|Plgrkt|ENSMUSG00000016495.6|plasminogen receptor, C-terminal lysine transmembrane protein
mm10_v2_chr5_+_115605642_115605696	0.0164957	Nkx1-1_Nkx1-2	ENSMUST00000094427.3|Gcn1l1|ENSMUSG00000041638.12|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)
mm10_v2_chr18_-_24603791_24603843	0.0143079	Nkx1-1_Nkx1-2	ENSMUST00000070726.3|Slc39a6|ENSMUSG00000024270.5|solute carrier family 39 (metal ion transporter), member 6
mm10_v2_chr18_-_24603464_24603530	0.0136214	Nkx1-1_Nkx1-2	ENSMUST00000154205.1|Slc39a6|ENSMUSG00000024270.5|solute carrier family 39 (metal ion transporter), member 6
mm10_v2_chr6_-_57535422_57535447	0.0135056	Nkx1-1_Nkx1-2	ENSMUST00000042766.3|Ppm1k|ENSMUSG00000037826.3|protein phosphatase 1K (PP2C domain containing)
mm10_v2_chr15_+_98092569_98092603	0.0124268	Nkx1-1_Nkx1-2	ENSMUST00000163507.1|Pfkm|ENSMUSG00000033065.7|phosphofructokinase, muscle
mm10_v2_chr7_+_29983948_29983964	0.0121831	Nkx1-1_Nkx1-2	ENSMUST00000148442.1|Zfp568|ENSMUSG00000074221.5|zinc finger protein 568
mm10_v2_chrX_-_160138375_160138435	0.0117099	Nkx1-1_Nkx1-2	ENSMUST00000033662.8|Pdha1|ENSMUSG00000031299.10|pyruvate dehydrogenase E1 alpha 1
mm10_v2_chr8_+_83972951_83973028	0.0101058	Nkx1-1_Nkx1-2	ENSMUST00000005606.6|Prkaca|ENSMUSG00000005469.9|protein kinase, cAMP dependent, catalytic, alpha
mm10_v2_chr9_-_55919605_55919605	0.00979737	Nkx1-1_Nkx1-2	ENSMUST00000037408.8|Scaper|ENSMUSG00000034007.9|S phase cyclin A-associated protein in the ER
mm10_v2_chr11_-_99230998_99231019	0.00897472	Nkx1-1_Nkx1-2	ENSMUST00000103133.3|Smarce1|ENSMUSG00000037935.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
mm10_v2_chr10_+_94575257_94575295	0.00874854	Nkx1-1_Nkx1-2	ENSMUST00000121471.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr2_-_102400257_102400396	0.00808034	Nkx1-1_Nkx1-2	ENSMUST00000152929.1|Trim44|ENSMUSG00000027189.10|tripartite motif-containing 44
mm10_v2_chrX_-_74085656_74085690	0.0079414	Nkx1-1_Nkx1-2	ENSMUST00000033770.6|Mecp2|ENSMUSG00000031393.10|methyl CpG binding protein 2
mm10_v2_chr5_+_37185897_37185897	0.00748103	Nkx1-1_Nkx1-2	ENSMUST00000094840.3|Gm1043|ENSMUSG00000070823.3|predicted gene 1043
mm10_v2_chr3_+_121953213_121953295	0.00716562	Nkx1-1_Nkx1-2	ENSMUST00000037958.7|Arhgap29|ENSMUSG00000039831.10|Rho GTPase activating protein 29 	ENSMUST00000128366.1|Arhgap29|ENSMUSG00000039831.10|Rho GTPase activating protein 29
mm10_v2_chr1_-_150466165_150466236	0.00692825	Nkx1-1_Nkx1-2	ENSMUST00000162367.1|Prg4|ENSMUSG00000006014.10|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) 	ENSMUST00000161611.1|Prg4|ENSMUSG00000006014.10|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) 	ENSMUST00000161320.1|Prg4|ENSMUSG00000006014.10|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) 	ENSMUST00000159035.1|Prg4|ENSMUSG00000006014.10|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)
mm10_v2_chr7_-_30552255_30552316	0.00688689	Nkx1-1_Nkx1-2	ENSMUST00000108165.1|BC053749|ENSMUSG00000036864.8|cDNA sequence BC053749 	ENSMUST00000153594.1|BC053749|ENSMUSG00000036864.8|cDNA sequence BC053749
mm10_v2_chr6_-_23650206_23650271	0.00585521	Nkx1-1_Nkx1-2	ENSMUST00000115354.1|Rnf133|ENSMUSG00000051956.4|ring finger protein 133
mm10_v2_chr12_+_84417196_84417254	0.00435321	Nkx1-1_Nkx1-2	ENSMUST00000183146.1|Rnf113a2|ENSMUSG00000098134.1|ring finger protein 113A2
mm10_v2_chr6_-_23650298_23650309	0.00353013	Nkx1-1_Nkx1-2	ENSMUST00000063548.3|Rnf133|ENSMUSG00000051956.4|ring finger protein 133
mm10_v2_chr15_+_22549022_22549082	0.00180699	Nkx1-1_Nkx1-2	ENSMUST00000163361.1|Cdh18|ENSMUSG00000040420.8|cadherin 18
mm10_v2_chr5_-_118244861_118245116	0.00125197	Nkx1-1_Nkx1-2	ENSMUST00000117177.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000133372.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000154786.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000121369.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2
mm10_v2_chr5_+_140607334_140607352	0.00123816	Nkx1-1_Nkx1-2	ENSMUST00000031555.1|Lfng|ENSMUSG00000029570.1|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm10_v2_chr15_+_41830921_41831001	0.000687905	Nkx1-1_Nkx1-2	ENSMUST00000166917.1|Oxr1|ENSMUSG00000022307.9|oxidation resistance 1
