mm10_v2_chr13_-_71963713_71963729	1.80185	Nkx2-9	ENSMUST00000077337.8|Irx1|ENSMUSG00000060969.8|Iroquois related homeobox 1 (Drosophila)
mm10_v2_chr6_+_78370877_78370892	1.77304	Nkx2-9	ENSMUST00000096904.3|Reg3b|ENSMUSG00000071356.5|regenerating islet-derived 3 beta
mm10_v2_chr2_-_129699833_129699850	1.77001	Nkx2-9	ENSMUST00000028883.5|Pdyn|ENSMUSG00000027400.5|prodynorphin
mm10_v2_chr6_-_78468863_78468878	1.62394	Nkx2-9	ENSMUST00000032089.2|Reg3g|ENSMUSG00000030017.2|regenerating islet-derived 3 gamma
mm10_v2_chr11_-_31824463_31824480	1.57301	Nkx2-9	ENSMUST00000129425.1|D630024D03Rik|ENSMUSG00000085772.1|RIKEN cDNA D630024D03 gene 	ENSMUST00000126265.1|D630024D03Rik|ENSMUSG00000085772.1|RIKEN cDNA D630024D03 gene
mm10_v2_chr3_+_138277489_138277495	1.50749	Nkx2-9	ENSMUST00000004232.9|Adh1|ENSMUSG00000074207.4|alcohol dehydrogenase 1 (class I)
mm10_v2_chr6_-_78378851_78378865	1.19814	Nkx2-9	ENSMUST00000089667.1|Reg3d|ENSMUSG00000068341.2|regenerating islet-derived 3 delta 	ENSMUST00000167492.1|Reg3d|ENSMUSG00000068341.2|regenerating islet-derived 3 delta
mm10_v2_chr6_+_78380700_78380715	1.05496	Nkx2-9	ENSMUST00000101272.1|Reg3a|ENSMUSG00000079516.1|regenerating islet-derived 3 alpha
mm10_v2_chr5_-_93045022_93045064	1.05234	Nkx2-9	ENSMUST00000061328.5|Sowahb|ENSMUSG00000045314.5|sosondowah ankyrin repeat domain family member B
mm10_v2_chr4_+_136247932_136248011	1.01723	Nkx2-9	ENSMUST00000102533.4|Tcea3|ENSMUSG00000001604.8|transcription elongation factor A (SII), 3 	ENSMUST00000143942.1|Tcea3|ENSMUSG00000001604.8|transcription elongation factor A (SII), 3
mm10_v2_chr11_+_29692937_29692997	0.981681	Nkx2-9	ENSMUST00000102843.3|Rtn4|ENSMUSG00000020458.10|reticulon 4 	ENSMUST00000102842.3|Rtn4|ENSMUSG00000020458.10|reticulon 4 	ENSMUST00000078830.4|Rtn4|ENSMUSG00000020458.10|reticulon 4 	ENSMUST00000170731.1|Rtn4|ENSMUSG00000020458.10|reticulon 4
mm10_v2_chr13_+_72632597_72632625	0.868759	Nkx2-9	ENSMUST00000172353.1|Irx2|ENSMUSG00000001504.9|Iroquois related homeobox 2 (Drosophila)
mm10_v2_chr5_-_45639501_45639525	0.759849	Nkx2-9	ENSMUST00000016023.7|Fam184b|ENSMUSG00000015879.7|family with sequence similarity 184, member B
mm10_v2_chr6_-_142507805_142507962	0.755268	Nkx2-9	ENSMUST00000134191.1|Ldhb|ENSMUSG00000030246.5|lactate dehydrogenase B 	ENSMUST00000032373.5|Ldhb|ENSMUSG00000030246.5|lactate dehydrogenase B
mm10_v2_chr16_+_36694024_36694038	0.702297	Nkx2-9	ENSMUST00000119464.1|Ildr1|ENSMUSG00000022900.8|immunoglobulin-like domain containing receptor 1
mm10_v2_chr13_-_92131494_92131680	0.681182	Nkx2-9	ENSMUST00000099326.3|Rasgrf2|ENSMUSG00000021708.10|RAS protein-specific guanine nucleotide-releasing factor 2 	ENSMUST00000146492.1|Rasgrf2|ENSMUSG00000021708.10|RAS protein-specific guanine nucleotide-releasing factor 2
mm10_v2_chr16_+_36693972_36694000	0.676652	Nkx2-9	ENSMUST00000023617.6|Ildr1|ENSMUSG00000022900.8|immunoglobulin-like domain containing receptor 1 	ENSMUST00000089618.3|Ildr1|ENSMUSG00000022900.8|immunoglobulin-like domain containing receptor 1
mm10_v2_chr11_-_96747419_96747436	0.676382	Nkx2-9	ENSMUST00000181758.1|2010300F17Rik|ENSMUSG00000097289.1|RIKEN cDNA 2010300F17 gene
mm10_v2_chr17_+_69969073_69969086	0.667629	Nkx2-9	ENSMUST00000133983.1|Dlgap1|ENSMUSG00000003279.10|discs, large (Drosophila) homolog-associated protein 1
mm10_v2_chr6_+_139621888_139621888	0.662761	Nkx2-9	ENSMUST00000032353.8|Pik3c2g|ENSMUSG00000096062.1|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide
mm10_v2_chr6_-_6217023_6217125	0.554539	Nkx2-9	ENSMUST00000015256.8|Slc25a13|ENSMUSG00000015112.9|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm10_v2_chr10_-_89506631_89506658	0.537419	Nkx2-9	ENSMUST00000058126.8|Nr1h4|ENSMUSG00000047638.9|nuclear receptor subfamily 1, group H, member 4 	ENSMUST00000105296.2|Nr1h4|ENSMUSG00000047638.9|nuclear receptor subfamily 1, group H, member 4
mm10_v2_chr3_+_96670131_96670131	0.534132	Nkx2-9	ENSMUST00000048427.5|Ankrd35|ENSMUSG00000038354.7|ankyrin repeat domain 35
mm10_v2_chr6_+_66896480_66896549	0.500176	Nkx2-9	ENSMUST00000114222.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12
mm10_v2_chr18_+_77185815_77185879	0.499405	Nkx2-9	ENSMUST00000079618.4|St8sia5|ENSMUSG00000025425.11|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm10_v2_chr6_+_66896397_66896479	0.482112	Nkx2-9	ENSMUST00000043148.6|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114228.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114227.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114226.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114225.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114224.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12
mm10_v2_chr6_-_37442095_37442154	0.481387	Nkx2-9	ENSMUST00000041093.5|Creb3l2|ENSMUSG00000038648.5|cAMP responsive element binding protein 3-like 2
mm10_v2_chr1_+_59256906_59256907	0.467146	Nkx2-9	ENSMUST00000160662.1|Cdk15|ENSMUSG00000026023.10|cyclin-dependent kinase 15 	ENSMUST00000114248.2|Cdk15|ENSMUSG00000026023.10|cyclin-dependent kinase 15
mm10_v2_chr12_+_24572276_24572308	0.463174	Nkx2-9	ENSMUST00000085553.5|Grhl1|ENSMUSG00000020656.9|grainyhead-like 1 (Drosophila)
mm10_v2_chr16_+_30065333_30065351	0.458423	Nkx2-9	ENSMUST00000023171.7|Hes1|ENSMUSG00000022528.7|hairy and enhancer of split 1 (Drosophila)
mm10_v2_chr12_-_55080098_55080121	0.444444	Nkx2-9	ENSMUST00000021406.5|2700097O09Rik|ENSMUSG00000062198.4|RIKEN cDNA 2700097O09 gene
mm10_v2_chr12_+_69790288_69790288	0.43868	Nkx2-9	ENSMUST00000021378.3|4930512B01Rik|ENSMUSG00000020992.3|RIKEN cDNA 4930512B01 gene
mm10_v2_chr17_-_83631892_83631934	0.415118	Nkx2-9	ENSMUST00000051482.1|Kcng3|ENSMUSG00000045053.1|potassium voltage-gated channel, subfamily G, member 3
mm10_v2_chr16_+_24448082_24448153	0.3805	Nkx2-9	ENSMUST00000078988.2|Lpp|ENSMUSG00000033306.8|LIM domain containing preferred translocation partner in lipoma
mm10_v2_chr4_-_132884509_132884523	0.372583	Nkx2-9	ENSMUST00000030698.4|Stx12|ENSMUSG00000028879.4|syntaxin 12
mm10_v2_chr1_-_120505084_120505084	0.360952	Nkx2-9	ENSMUST00000027639.1|Marco|ENSMUSG00000026390.1|macrophage receptor with collagenous structure
mm10_v2_chr11_-_96747405_96747416	0.347227	Nkx2-9	ENSMUST00000180492.1|2010300F17Rik|ENSMUSG00000097289.1|RIKEN cDNA 2010300F17 gene
mm10_v2_chr11_-_46389454_46389467	0.34345	Nkx2-9	ENSMUST00000101306.3|Itk|ENSMUSG00000020395.7|IL2 inducible T cell kinase
mm10_v2_chr5_+_141856692_141856787	0.340266	Nkx2-9	ENSMUST00000074546.6|Sdk1|ENSMUSG00000039683.10|sidekick homolog 1 (chicken)
mm10_v2_chr6_+_41354105_41354185	0.310081	Nkx2-9	ENSMUST00000072103.5|Try10|ENSMUSG00000071521.3|trypsin 10
mm10_v2_chr16_-_36990449_36990467	0.301439	Nkx2-9	ENSMUST00000075869.6|Fbxo40|ENSMUSG00000047746.8|F-box protein 40
mm10_v2_chr6_-_66896521_66896521	0.290845	Nkx2-9	ENSMUST00000065878.3|4930597O21Rik|ENSMUSG00000053442.3|RIKEN cDNA 4930597O21 gene
mm10_v2_chrX_+_135993820_135993820	0.27893	Nkx2-9	ENSMUST00000058119.7|Arxes2|ENSMUSG00000048040.7|adipocyte-related X-chromosome expressed sequence 2
mm10_v2_chr2_-_170602017_170602017	0.275277	Nkx2-9	ENSMUST00000062355.1|4930470P17Rik|ENSMUSG00000043583.1|RIKEN cDNA 4930470P17 gene
mm10_v2_chr11_+_87699897_87699897	0.274889	Nkx2-9	ENSMUST00000040089.4|Rnf43|ENSMUSG00000034177.9|ring finger protein 43
mm10_v2_chr10_-_125328957_125328968	0.260504	Nkx2-9	ENSMUST00000063318.2|Slc16a7|ENSMUSG00000020102.8|solute carrier family 16 (monocarboxylic acid transporters), member 7
mm10_v2_chr11_-_100759740_100759754	0.24732	Nkx2-9	ENSMUST00000107361.2|Kcnh4|ENSMUSG00000035355.9|potassium voltage-gated channel, subfamily H (eag-related), member 4
mm10_v2_chr10_+_19934472_19934526	0.237887	Nkx2-9	ENSMUST00000095806.3|Map3k5|ENSMUSG00000071369.4|mitogen-activated protein kinase kinase kinase 5 	ENSMUST00000120259.1|Map3k5|ENSMUSG00000071369.4|mitogen-activated protein kinase kinase kinase 5
mm10_v2_chr17_+_34263209_34263256	0.237072	Nkx2-9	ENSMUST00000040828.5|H2-Ab1|ENSMUSG00000073421.5|histocompatibility 2, class II antigen A, beta 1
mm10_v2_chr11_-_106788845_106788883	0.235231	Nkx2-9	ENSMUST00000123339.1|Ddx5|ENSMUSG00000020719.8|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm10_v2_chr9_-_104102550_104102568	0.233705	Nkx2-9	ENSMUST00000050139.4|Ackr4|ENSMUSG00000041748.5|atypical chemokine receptor 4
mm10_v2_chr9_+_74861888_74861921	0.218819	Nkx2-9	ENSMUST00000056006.9|Onecut1|ENSMUSG00000043013.9|one cut domain, family member 1
mm10_v2_chr11_-_106789157_106789192	0.217057	Nkx2-9	ENSMUST00000129585.1|Ddx5|ENSMUSG00000020719.8|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm10_v2_chr11_-_106788486_106788532	0.215434	Nkx2-9	ENSMUST00000021062.5|Ddx5|ENSMUSG00000020719.8|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm10_v2_chr8_+_45069137_45069137	0.214895	Nkx2-9	ENSMUST00000067984.7|Mtnr1a|ENSMUSG00000054764.8|melatonin receptor 1A
mm10_v2_chr5_-_66004278_66004291	0.213209	Nkx2-9	ENSMUST00000067737.5|9130230L23Rik|ENSMUSG00000054598.7|RIKEN cDNA 9130230L23 gene
mm10_v2_chr8_+_95320440_95320496	0.205763	Nkx2-9	ENSMUST00000162294.1|Tepp|ENSMUSG00000090206.1|testis, prostate and placenta expressed
mm10_v2_chrX_-_95658416_95658509	0.20513	Nkx2-9	ENSMUST00000044382.6|Zc4h2|ENSMUSG00000035062.7|zinc finger, C4H2 domain containing
mm10_v2_chr18_-_35662180_35662195	0.198688	Nkx2-9	ENSMUST00000025209.4|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24 	ENSMUST00000096573.2|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24
mm10_v2_chrX_-_49788204_49788243	0.194296	Nkx2-9	ENSMUST00000114893.1|Igsf1|ENSMUSG00000031111.10|immunoglobulin superfamily, member 1
mm10_v2_chr5_+_91987471_91987479	0.193559	Nkx2-9	ENSMUST00000178614.1|Gm1045|ENSMUSG00000096035.1|predicted gene 1045
mm10_v2_chr8_+_123212857_123212911	0.193543	Nkx2-9	ENSMUST00000060133.6|Spata33|ENSMUSG00000048478.6|spermatogenesis associated 33
mm10_v2_chrX_-_6320717_6320726	0.192668	Nkx2-9	ENSMUST00000024049.7|Bmp15|ENSMUSG00000023279.7|bone morphogenetic protein 15
mm10_v2_chr14_-_46831984_46832057	0.18728	Nkx2-9	ENSMUST00000181311.1|Gm10101|ENSMUSG00000061510.3|predicted gene 10101 	ENSMUST00000074862.2|Gm10101|ENSMUSG00000061510.3|predicted gene 10101
mm10_v2_chr9_-_99710063_99710085	0.178264	Nkx2-9	ENSMUST00000035048.5|Cldn18|ENSMUSG00000032473.7|claudin 18
mm10_v2_chr17_-_25861456_25861510	0.174741	Nkx2-9	ENSMUST00000079461.8|Wdr90|ENSMUSG00000073434.5|WD repeat domain 90 	ENSMUST00000176923.1|Wdr90|ENSMUSG00000073434.5|WD repeat domain 90
mm10_v2_chr9_-_75683992_75684046	0.162774	Nkx2-9	ENSMUST00000034699.6|Scg3|ENSMUSG00000032181.6|secretogranin III
mm10_v2_chr5_-_24445254_24445287	0.160144	Nkx2-9	ENSMUST00000030800.6|Fastk|ENSMUSG00000028959.8|Fas-activated serine/threonine kinase
mm10_v2_chr15_-_98777261_98777261	0.159147	Nkx2-9	ENSMUST00000166022.1|Wnt10b|ENSMUSG00000022996.8|wingless related MMTV integration site 10b
mm10_v2_chrX_+_74297097_74297178	0.15453	Nkx2-9	ENSMUST00000019231.5|Atp6ap1|ENSMUSG00000019087.7|ATPase, H+ transporting, lysosomal accessory protein 1 	ENSMUST00000147900.1|Atp6ap1|ENSMUSG00000019087.7|ATPase, H+ transporting, lysosomal accessory protein 1 	ENSMUST00000147275.1|Atp6ap1|ENSMUSG00000019087.7|ATPase, H+ transporting, lysosomal accessory protein 1 	ENSMUST00000114171.3|Atp6ap1|ENSMUSG00000019087.7|ATPase, H+ transporting, lysosomal accessory protein 1
mm10_v2_chr6_-_125380793_125380793	0.152107	Nkx2-9	ENSMUST00000042647.6|Plekhg6|ENSMUSG00000038167.6|pleckstrin homology domain containing, family G (with RhoGef domain) member 6
mm10_v2_chr10_+_63061582_63061618	0.151048	Nkx2-9	ENSMUST00000020266.8|Pbld1|ENSMUSG00000020072.8|phenazine biosynthesis-like protein domain containing 1 	ENSMUST00000178684.1|Pbld1|ENSMUSG00000020072.8|phenazine biosynthesis-like protein domain containing 1
mm10_v2_chrX_+_42149288_42149412	0.14629	Nkx2-9	ENSMUST00000115073.2|Stag2|ENSMUSG00000025862.8|stromal antigen 2 	ENSMUST00000115072.1|Stag2|ENSMUSG00000025862.8|stromal antigen 2
mm10_v2_chr16_+_70313949_70314016	0.14394	Nkx2-9	ENSMUST00000163832.1|Gbe1|ENSMUSG00000022707.10|glucan (1,4-alpha-), branching enzyme 1
mm10_v2_chr1_+_20730903_20730908	0.141926	Nkx2-9	ENSMUST00000027061.4|Il17a|ENSMUSG00000025929.4|interleukin 17A
mm10_v2_chr17_-_51833278_51833299	0.13971	Nkx2-9	ENSMUST00000133574.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr1_-_192834719_192834719	0.136897	Nkx2-9	ENSMUST00000057543.2|A730013G03Rik|ENSMUSG00000047384.2|RIKEN cDNA A730013G03 gene
mm10_v2_chr16_-_35490873_35490891	0.132624	Nkx2-9	ENSMUST00000023550.7|Pdia5|ENSMUSG00000022844.7|protein disulfide isomerase associated 5
mm10_v2_chrX_-_95658392_95658412	0.132616	Nkx2-9	ENSMUST00000120620.1|Zc4h2|ENSMUSG00000035062.7|zinc finger, C4H2 domain containing
mm10_v2_chr14_+_75455957_75455996	0.125726	Nkx2-9	ENSMUST00000164848.1|Siah3|ENSMUSG00000091722.1|seven in absentia homolog 3 (Drosophila)
mm10_v2_chr4_-_119190005_119190016	0.11907	Nkx2-9	ENSMUST00000138395.1|Ermap|ENSMUSG00000028644.10|erythroblast membrane-associated protein 	ENSMUST00000156746.1|Ermap|ENSMUSG00000028644.10|erythroblast membrane-associated protein
mm10_v2_chrX_+_7899350_7899362	0.117624	Nkx2-9	ENSMUST00000033498.3|Timm17b|ENSMUSG00000031158.5|translocase of inner mitochondrial membrane 17b
mm10_v2_chr6_+_145121727_145121748	0.116927	Nkx2-9	ENSMUST00000032396.6|Lrmp|ENSMUSG00000030263.7|lymphoid-restricted membrane protein
mm10_v2_chr19_+_8819401_8819401	0.116684	Nkx2-9	ENSMUST00000096753.3|Hnrnpul2|ENSMUSG00000071659.3|heterogeneous nuclear ribonucleoprotein U-like 2
mm10_v2_chr18_+_37513652_37513652	0.116657	Nkx2-9	ENSMUST00000061405.4|Pcdhb21|ENSMUSG00000044022.4|protocadherin beta 21
mm10_v2_chr7_+_75610038_75610080	0.114989	Nkx2-9	ENSMUST00000125771.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13
mm10_v2_chr5_+_67260565_67260692	0.111214	Nkx2-9	ENSMUST00000037918.5|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33 	ENSMUST00000162543.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33
mm10_v2_chrX_+_42149534_42149683	0.110006	Nkx2-9	ENSMUST00000127618.1|Stag2|ENSMUSG00000025862.8|stromal antigen 2
mm10_v2_chr4_-_141664063_141664170	0.106991	Nkx2-9	ENSMUST00000084203.4|Plekhm2|ENSMUSG00000028917.8|pleckstrin homology domain containing, family M (with RUN domain) member 2
mm10_v2_chr5_+_91074611_91074629	0.105624	Nkx2-9	ENSMUST00000031324.4|Ereg|ENSMUSG00000029377.4|epiregulin
mm10_v2_chr9_-_107770945_107771007	0.103923	Nkx2-9	ENSMUST00000183248.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000182022.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000035199.6|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000182659.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5
mm10_v2_chr10_+_21690845_21690845	0.101661	Nkx2-9	ENSMUST00000071008.3|Gm5420|ENSMUSG00000056716.3|predicted gene 5420
mm10_v2_chr5_+_67260696_67260711	0.0962197	Nkx2-9	ENSMUST00000161233.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33 	ENSMUST00000160352.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33
mm10_v2_chrX_-_100594860_100594876	0.0899483	Nkx2-9	ENSMUST00000053373.1|P2ry4|ENSMUSG00000044359.1|pyrimidinergic receptor P2Y, G-protein coupled, 4
mm10_v2_chr11_-_84068766_84068801	0.0822075	Nkx2-9	ENSMUST00000018792.5|Dusp14|ENSMUSG00000018648.9|dual specificity phosphatase 14
mm10_v2_chr6_-_101377897_101378016	0.0772988	Nkx2-9	ENSMUST00000075994.6|Pdzrn3|ENSMUSG00000035357.10|PDZ domain containing RING finger 3
mm10_v2_chr2_-_25575224_25575224	0.07515	Nkx2-9	ENSMUST00000039156.6|Phpt1|ENSMUSG00000036504.6|phosphohistidine phosphatase 1
mm10_v2_chr13_-_107890059_107890073	0.0749957	Nkx2-9	ENSMUST00000105097.2|Zswim6|ENSMUSG00000032846.9|zinc finger SWIM-type containing 6
mm10_v2_chr16_-_33380717_33380755	0.072743	Nkx2-9	ENSMUST00000180923.1|1700007L15Rik|ENSMUSG00000097318.1|RIKEN cDNA 1700007L15 gene
mm10_v2_chr3_+_122419772_122419787	0.0715194	Nkx2-9	ENSMUST00000029766.4|Bcar3|ENSMUSG00000028121.4|breast cancer anti-estrogen resistance 3
mm10_v2_chr6_-_142008745_142008745	0.0683727	Nkx2-9	ENSMUST00000111832.1|Gm6614|ENSMUSG00000079263.2|predicted gene 6614
mm10_v2_chr16_+_33380765_33380787	0.067965	Nkx2-9	ENSMUST00000165418.1|Zfp148|ENSMUSG00000022811.10|zinc finger protein 148
mm10_v2_chr10_+_112928501_112928501	0.0674329	Nkx2-9	ENSMUST00000180464.1|Gm26596|ENSMUSG00000097185.1|predicted gene, 26596
mm10_v2_chr2_+_127270208_127270271	0.0642272	Nkx2-9	ENSMUST00000110375.2|Stard7|ENSMUSG00000027367.10|START domain containing 7
mm10_v2_chr7_-_104279732_104279732	0.0635508	Nkx2-9	ENSMUST00000051795.9|Trim5|ENSMUSG00000060441.8|tripartite motif-containing 5
mm10_v2_chr11_+_108920342_108920358	0.0633026	Nkx2-9	ENSMUST00000052915.7|Axin2|ENSMUSG00000000142.9|axin2
mm10_v2_chr9_+_75775355_75775378	0.0630717	Nkx2-9	ENSMUST00000012281.7|Bmp5|ENSMUSG00000032179.7|bone morphogenetic protein 5
mm10_v2_chr6_-_23650206_23650271	0.0627934	Nkx2-9	ENSMUST00000115354.1|Rnf133|ENSMUSG00000051956.4|ring finger protein 133
mm10_v2_chrX_-_95658379_95658390	0.062124	Nkx2-9	ENSMUST00000119640.1|Zc4h2|ENSMUSG00000035062.7|zinc finger, C4H2 domain containing
mm10_v2_chr9_-_56161051_56161075	0.0576146	Nkx2-9	ENSMUST00000034876.8|Tspan3|ENSMUSG00000032324.10|tetraspanin 3
mm10_v2_chr8_+_77549393_77549444	0.0513216	Nkx2-9	ENSMUST00000056237.8|Prmt10|ENSMUSG00000037134.10|protein arginine methyltransferase 10 (putative) 	ENSMUST00000118622.1|Prmt10|ENSMUSG00000037134.10|protein arginine methyltransferase 10 (putative)
mm10_v2_chr15_-_88978958_88979007	0.0492791	Nkx2-9	ENSMUST00000042594.6|Mlc1|ENSMUSG00000035805.7|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human) 	ENSMUST00000109368.1|Mlc1|ENSMUSG00000035805.7|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)
mm10_v2_chr11_-_99493112_99493137	0.0442589	Nkx2-9	ENSMUST00000006969.7|Krt23|ENSMUSG00000006777.7|keratin 23
mm10_v2_chr17_+_8434423_8434423	0.0440818	Nkx2-9	ENSMUST00000074667.2|T|ENSMUSG00000062327.4|brachyury
mm10_v2_chr9_+_18443456_18443456	0.0394979	Nkx2-9	ENSMUST00000051008.8|Mbd3l2|ENSMUSG00000047508.8|methyl-CpG binding domain protein 3-like 2
mm10_v2_chr3_-_155055341_155055407	0.0370166	Nkx2-9	ENSMUST00000064076.3|Tnni3k|ENSMUSG00000040086.7|TNNI3 interacting kinase
mm10_v2_chr18_-_65393844_65393922	0.0366541	Nkx2-9	ENSMUST00000035548.8|Alpk2|ENSMUSG00000032845.9|alpha-kinase 2
mm10_v2_chr15_-_10470490_10470527	0.0347656	Nkx2-9	ENSMUST00000136591.1|Dnajc21|ENSMUSG00000044224.10|DnaJ (Hsp40) homolog, subfamily C, member 21
mm10_v2_chr8_-_80880479_80880499	0.0320751	Nkx2-9	ENSMUST00000034150.8|Gab1|ENSMUSG00000031714.8|growth factor receptor bound protein 2-associated protein 1
mm10_v2_chr1_+_87264345_87264370	0.0316428	Nkx2-9	ENSMUST00000118687.1|Efhd1|ENSMUSG00000026255.9|EF hand domain containing 1 	ENSMUST00000027472.6|Efhd1|ENSMUSG00000026255.9|EF hand domain containing 1
mm10_v2_chr4_-_134853294_134853345	0.0256342	Nkx2-9	ENSMUST00000030628.8|Tmem57|ENSMUSG00000028826.8|transmembrane protein 57
mm10_v2_chr7_+_70388305_70388305	0.0245533	Nkx2-9	ENSMUST00000080024.5|B130024G19Rik|ENSMUSG00000062383.5|RIKEN cDNA B130024G19 gene
mm10_v2_chr5_+_117413977_117414011	0.0242477	Nkx2-9	ENSMUST00000180430.1|Ksr2|ENSMUSG00000061578.8|kinase suppressor of ras 2
mm10_v2_chr3_-_89245005_89245031	0.019865	Nkx2-9	ENSMUST00000107464.1|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr11_-_32267547_32267707	0.0191528	Nkx2-9	ENSMUST00000109389.2|Nprl3|ENSMUSG00000020289.9|nitrogen permease regulator-like 3 	ENSMUST00000129010.1|Nprl3|ENSMUSG00000020289.9|nitrogen permease regulator-like 3 	ENSMUST00000020530.5|Nprl3|ENSMUSG00000020289.9|nitrogen permease regulator-like 3
mm10_v2_chr6_+_42286709_42286856	0.0175125	Nkx2-9	ENSMUST00000163936.1|Clcn1|ENSMUSG00000029862.9|chloride channel 1
mm10_v2_chr4_-_72852622_72852648	0.0175038	Nkx2-9	ENSMUST00000179234.1|Aldoart1|ENSMUSG00000059343.4|aldolase 1 A, retrogene 1 	ENSMUST00000078617.4|Aldoart1|ENSMUSG00000059343.4|aldolase 1 A, retrogene 1
mm10_v2_chr6_-_28126125_28126195	0.0173652	Nkx2-9	ENSMUST00000115324.2|Grm8|ENSMUSG00000024211.9|glutamate receptor, metabotropic 8 	ENSMUST00000090512.3|Grm8|ENSMUSG00000024211.9|glutamate receptor, metabotropic 8
mm10_v2_chr16_+_43363855_43363888	0.0173239	Nkx2-9	ENSMUST00000156367.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr9_+_98490522_98490537	0.0150885	Nkx2-9	ENSMUST00000035029.2|Rbp2|ENSMUSG00000032454.3|retinol binding protein 2, cellular
mm10_v2_chr7_-_142576492_142576538	0.0150193	Nkx2-9	ENSMUST00000140716.1|H19|ENSMUSG00000000031.9|H19 fetal liver mRNA
mm10_v2_chr3_-_59101810_59101826	0.0113083	Nkx2-9	ENSMUST00000085040.4|Gpr171|ENSMUSG00000050075.8|G protein-coupled receptor 171
mm10_v2_chr1_+_60977898_60977937	0.0112869	Nkx2-9	ENSMUST00000027162.5|Icos|ENSMUSG00000026009.8|inducible T cell co-stimulator 	ENSMUST00000102827.3|Icos|ENSMUSG00000026009.8|inducible T cell co-stimulator
mm10_v2_chr11_+_70030023_70030083	0.0102745	Nkx2-9	ENSMUST00000143920.2|Dlg4|ENSMUSG00000020886.10|discs, large homolog 4 (Drosophila)
mm10_v2_chrX_+_152001845_152001908	0.00932037	Nkx2-9	ENSMUST00000026289.3|Hsd17b10|ENSMUSG00000025260.4|hydroxysteroid (17-beta) dehydrogenase 10 	ENSMUST00000112617.3|Hsd17b10|ENSMUSG00000025260.4|hydroxysteroid (17-beta) dehydrogenase 10
mm10_v2_chr7_-_19665005_19665030	0.00922332	Nkx2-9	ENSMUST00000055242.9|Clptm1|ENSMUSG00000002981.9|cleft lip and palate associated transmembrane protein 1
mm10_v2_chr5_-_62765618_62765656	0.00814315	Nkx2-9	ENSMUST00000159470.1|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr11_+_113684412_113684480	0.00775074	Nkx2-9	ENSMUST00000042227.8|D11Wsu47e|ENSMUSG00000041623.11|DNA segment, Chr 11, Wayne State University 47, expressed 	ENSMUST00000123466.1|D11Wsu47e|ENSMUSG00000041623.11|DNA segment, Chr 11, Wayne State University 47, expressed 	ENSMUST00000106621.3|D11Wsu47e|ENSMUSG00000041623.11|DNA segment, Chr 11, Wayne State University 47, expressed
mm10_v2_chr11_-_49114874_49114874	0.00738516	Nkx2-9	ENSMUST00000109201.1|Olfr1396|ENSMUSG00000047511.2|olfactory receptor 1396
mm10_v2_chrX_-_7899220_7899271	0.0029825	Nkx2-9	ENSMUST00000033497.2|Pqbp1|ENSMUSG00000031157.4|polyglutamine binding protein 1
