mm10_v2_chr6_-_145048809_145048821	1.64205	Pax1_Pax9	ENSMUST00000032402.5|Bcat1|ENSMUSG00000030268.11|branched chain aminotransferase 1, cytosolic
mm10_v2_chr9_-_22389113_22389206	0.919057	Pax1_Pax9	ENSMUST00000040912.7|Anln|ENSMUSG00000036777.7|anillin, actin binding protein
mm10_v2_chr5_+_112255813_112255874	0.856255	Pax1_Pax9	ENSMUST00000031286.6|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1 	ENSMUST00000131673.1|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1 	ENSMUST00000112375.1|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1
mm10_v2_chr16_+_87553313_87553342	0.618068	Pax1_Pax9	ENSMUST00000026700.7|Map3k7cl|ENSMUSG00000025610.7|Map3k7 C-terminal like
mm10_v2_chr4_+_115000156_115000170	0.512411	Pax1_Pax9	ENSMUST00000030490.6|Stil|ENSMUSG00000028718.10|Scl/Tal1 interrupting locus
mm10_v2_chr15_-_84105662_84105754	0.469509	Pax1_Pax9	ENSMUST00000082365.5|Sult4a1|ENSMUSG00000018865.8|sulfotransferase family 4A, member 1
mm10_v2_chr4_+_11558914_11558979	0.437733	Pax1_Pax9	ENSMUST00000178703.1|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000095145.5|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000108306.2|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000070755.6|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae)
mm10_v2_chr4_+_115000174_115000189	0.379728	Pax1_Pax9	ENSMUST00000129957.1|Stil|ENSMUSG00000028718.10|Scl/Tal1 interrupting locus
mm10_v2_chr7_+_48789003_48789060	0.321636	Pax1_Pax9	ENSMUST00000118927.1|Zdhhc13|ENSMUSG00000030471.11|zinc finger, DHHC domain containing 13 	ENSMUST00000125280.1|Zdhhc13|ENSMUSG00000030471.11|zinc finger, DHHC domain containing 13
mm10_v2_chr2_+_178193075_178193099	0.314593	Pax1_Pax9	ENSMUST00000103065.1|Phactr3|ENSMUSG00000027525.11|phosphatase and actin regulator 3
mm10_v2_chr9_+_21337828_21337859	0.279829	Pax1_Pax9	ENSMUST00000034697.7|Slc44a2|ENSMUSG00000057193.7|solute carrier family 44, member 2
mm10_v2_chr5_+_93206518_93206518	0.250343	Pax1_Pax9	ENSMUST00000031330.4|2010109A12Rik|ENSMUSG00000029384.4|RIKEN cDNA 2010109A12 gene
mm10_v2_chr17_-_27909206_27909264	0.193878	Pax1_Pax9	ENSMUST00000114848.1|Taf11|ENSMUSG00000024218.6|TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr5_+_129787390_129787439	0.190248	Pax1_Pax9	ENSMUST00000031402.8|Cct6a|ENSMUSG00000029447.8|chaperonin containing Tcp1, subunit 6a (zeta)
mm10_v2_chr2_-_33468493_33468572	0.166689	Pax1_Pax9	ENSMUST00000113156.1|Zbtb43|ENSMUSG00000026788.7|zinc finger and BTB domain containing 43 	ENSMUST00000028125.5|Zbtb43|ENSMUSG00000026788.7|zinc finger and BTB domain containing 43 	ENSMUST00000126442.1|Zbtb43|ENSMUSG00000026788.7|zinc finger and BTB domain containing 43
mm10_v2_chr4_-_110286581_110286617	0.138372	Pax1_Pax9	ENSMUST00000138972.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr18_+_69344503_69344530	0.135915	Pax1_Pax9	ENSMUST00000114985.3|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr1_-_37719782_37719899	0.11761	Pax1_Pax9	ENSMUST00000160589.1|2010300C02Rik|ENSMUSG00000026090.10|RIKEN cDNA 2010300C02 gene
mm10_v2_chr17_+_27909337_27909409	0.0967814	Pax1_Pax9	ENSMUST00000114842.1|Anks1|ENSMUSG00000024219.9|ankyrin repeat and SAM domain containing 1 	ENSMUST00000025058.7|Anks1|ENSMUSG00000024219.9|ankyrin repeat and SAM domain containing 1 	ENSMUST00000088027.5|Anks1|ENSMUSG00000024219.9|ankyrin repeat and SAM domain containing 1
mm10_v2_chr11_+_83753689_83753722	0.0779103	Pax1_Pax9	ENSMUST00000001002.7|Heatr6|ENSMUSG00000000976.7|HEAT repeat containing 6
mm10_v2_chr5_-_129787175_129787259	0.0705582	Pax1_Pax9	ENSMUST00000031399.6|Psph|ENSMUSG00000029446.8|phosphoserine phosphatase
mm10_v2_chr8_+_31150307_31150346	0.0696019	Pax1_Pax9	ENSMUST00000098842.2|Tti2|ENSMUSG00000031577.9|TELO2 interacting protein 2
mm10_v2_chrX_+_74313014_74313109	0.0677652	Pax1_Pax9	ENSMUST00000114160.1|Fam50a|ENSMUSG00000001962.8|family with sequence similarity 50, member A
mm10_v2_chr8_-_94838255_94838358	0.0638135	Pax1_Pax9	ENSMUST00000161762.1|Ciapin1|ENSMUSG00000031781.7|cytokine induced apoptosis inhibitor 1 	ENSMUST00000162538.1|Ciapin1|ENSMUSG00000031781.7|cytokine induced apoptosis inhibitor 1
mm10_v2_chr9_+_65361049_65361060	0.0553551	Pax1_Pax9	ENSMUST00000147185.1|Gm514|ENSMUSG00000086228.1|predicted gene 514
mm10_v2_chr9_+_96196246_96196280	0.0539289	Pax1_Pax9	ENSMUST00000165120.2|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2 	ENSMUST00000034982.9|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2
mm10_v2_chr9_-_121839460_121839465	0.0502006	Pax1_Pax9	ENSMUST00000135986.2|Ccdc13|ENSMUSG00000079235.4|coiled-coil domain containing 13
mm10_v2_chr7_+_118633729_118633749	0.0322513	Pax1_Pax9	ENSMUST00000057320.7|Tmc5|ENSMUSG00000030650.11|transmembrane channel-like gene family 5
mm10_v2_chr10_+_75573448_75573464	0.0268617	Pax1_Pax9	ENSMUST00000006508.3|Ggt1|ENSMUSG00000006345.4|gamma-glutamyltransferase 1
mm10_v2_chr2_+_84734050_84734107	0.0227596	Pax1_Pax9	ENSMUST00000090729.2|Ypel4|ENSMUSG00000034059.7|yippee-like 4 (Drosophila)
mm10_v2_chr8_+_94838321_94838429	0.0212141	Pax1_Pax9	ENSMUST00000034234.8|Coq9|ENSMUSG00000031782.8|coenzyme Q9 homolog (yeast) 	ENSMUST00000159871.1|Coq9|ENSMUSG00000031782.8|coenzyme Q9 homolog (yeast)
mm10_v2_chr13_-_62607499_62607499	0.000578899	Pax1_Pax9	ENSMUST00000091563.4|6720489N17Rik|ENSMUSG00000072066.3|RIKEN cDNA 6720489N17 gene
