mm10_v2_chr10_+_4611971_4612021	2.28121	Rara	ENSMUST00000105590.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha) 	ENSMUST00000067086.7|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha)
mm10_v2_chr14_+_64588112_64588120	0.949456	Rara	ENSMUST00000181808.1|A930011O12Rik|ENSMUSG00000097545.1|RIKEN cDNA A930011O12 gene
mm10_v2_chr7_-_141429351_141429429	0.840594	Rara	ENSMUST00000164387.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1 	ENSMUST00000137488.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1 	ENSMUST00000084436.3|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1
mm10_v2_chr14_+_55618023_55618037	0.684879	Rara	ENSMUST00000002395.7|Rec8|ENSMUSG00000002324.7|REC8 homolog (yeast)
mm10_v2_chr12_+_87026564_87026616	0.684357	Rara	ENSMUST00000110187.1|Tmem63c|ENSMUSG00000034145.8|transmembrane protein 63c 	ENSMUST00000156162.1|Tmem63c|ENSMUSG00000034145.8|transmembrane protein 63c
mm10_v2_chr11_+_98960412_98960485	0.627255	Rara	ENSMUST00000107473.2|Rara|ENSMUSG00000037992.10|retinoic acid receptor, alpha
mm10_v2_chr5_+_87925579_87925621	0.597855	Rara	ENSMUST00000001667.6|Csn3|ENSMUSG00000001622.9|casein kappa 	ENSMUST00000113267.1|Csn3|ENSMUSG00000001622.9|casein kappa
mm10_v2_chr15_+_82256023_82256130	0.556925	Rara	ENSMUST00000143238.1|1500009C09Rik|ENSMUSG00000068099.4|RIKEN cDNA 1500009C09 gene
mm10_v2_chr7_-_141429433_141429491	0.512556	Rara	ENSMUST00000124444.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1
mm10_v2_chr5_+_135806859_135806902	0.443725	Rara	ENSMUST00000126232.1|Srrm3|ENSMUSG00000039860.13|serine/arginine repetitive matrix 3
mm10_v2_chr2_-_5012716_5012791	0.436603	Rara	ENSMUST00000027980.7|Mcm10|ENSMUSG00000026669.8|minichromosome maintenance deficient 10 (S. cerevisiae)
mm10_v2_chr3_+_79884496_79884571	0.352765	Rara	ENSMUST00000118853.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr17_-_56133817_56133854	0.320926	Rara	ENSMUST00000167545.1|Sema6b|ENSMUSG00000001227.5|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
mm10_v2_chr5_+_87925624_87925639	0.308561	Rara	ENSMUST00000113271.2|Csn3|ENSMUSG00000001622.9|casein kappa
mm10_v2_chr2_+_5845243_5845311	0.304329	Rara	ENSMUST00000127116.1|Nudt5|ENSMUSG00000025817.6|nudix (nucleoside diphosphate linked moiety X)-type motif 5
mm10_v2_chr4_-_141599835_141600032	0.273036	Rara	ENSMUST00000141518.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000127455.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000105784.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000147785.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1
mm10_v2_chr6_+_91157373_91157397	0.244497	Rara	ENSMUST00000155007.1|Hdac11|ENSMUSG00000034245.4|histone deacetylase 11
mm10_v2_chr2_+_5845017_5845062	0.237582	Rara	ENSMUST00000026927.3|Nudt5|ENSMUSG00000025817.6|nudix (nucleoside diphosphate linked moiety X)-type motif 5 	ENSMUST00000179748.1|Nudt5|ENSMUSG00000025817.6|nudix (nucleoside diphosphate linked moiety X)-type motif 5
mm10_v2_chr7_-_44670820_44670862	0.235851	Rara	ENSMUST00000048102.7|Myh14|ENSMUSG00000030739.11|myosin, heavy polypeptide 14
mm10_v2_chr2_-_25617672_25617689	0.223622	Rara	ENSMUST00000028309.3|4921530D09Rik|ENSMUSG00000026940.3|RIKEN cDNA 4921530D09 gene
mm10_v2_chr8_+_69659263_69659263	0.221791	Rara	ENSMUST00000169125.1|Zfp964|ENSMUSG00000091764.1|zinc finger protein 964
mm10_v2_chr17_-_32388885_32389116	0.188044	Rara	ENSMUST00000087703.5|Wiz|ENSMUSG00000024050.9|widely-interspaced zinc finger motifs 	ENSMUST00000170603.1|Wiz|ENSMUSG00000024050.9|widely-interspaced zinc finger motifs
mm10_v2_chr6_-_124542281_124542359	0.184774	Rara	ENSMUST00000159463.1|C1s|ENSMUSG00000038521.11|complement component 1, s subcomponent 	ENSMUST00000162844.1|C1s|ENSMUSG00000038521.11|complement component 1, s subcomponent 	ENSMUST00000160505.1|C1s|ENSMUSG00000038521.11|complement component 1, s subcomponent 	ENSMUST00000162443.1|C1s|ENSMUSG00000038521.11|complement component 1, s subcomponent
mm10_v2_chr9_+_54586450_54586512	0.182672	Rara	ENSMUST00000167866.1|Idh3a|ENSMUSG00000032279.10|isocitrate dehydrogenase 3 (NAD+) alpha
mm10_v2_chr7_-_141010759_141010772	0.180108	Rara	ENSMUST00000026565.6|Ifitm3|ENSMUSG00000025492.6|interferon induced transmembrane protein 3
mm10_v2_chr8_-_119778380_119778431	0.162434	Rara	ENSMUST00000049156.5|Tldc1|ENSMUSG00000034105.8|TBC/LysM associated domain containing 1
mm10_v2_chr3_+_79884931_79885090	0.153831	Rara	ENSMUST00000135021.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr2_-_34754364_34754561	0.149908	Rara	ENSMUST00000142436.1|Gapvd1|ENSMUSG00000026867.12|GTPase activating protein and VPS9 domains 1 	ENSMUST00000113099.3|Gapvd1|ENSMUSG00000026867.12|GTPase activating protein and VPS9 domains 1 	ENSMUST00000028224.8|Gapvd1|ENSMUSG00000026867.12|GTPase activating protein and VPS9 domains 1
mm10_v2_chr11_+_3488275_3488287	0.145549	Rara	ENSMUST00000064265.6|Pla2g3|ENSMUSG00000034579.11|phospholipase A2, group III
mm10_v2_chrX_+_106187100_106187179	0.131243	Rara	ENSMUST00000081593.6|Pgk1|ENSMUSG00000062070.6|phosphoglycerate kinase 1
mm10_v2_chr9_-_109074049_109074140	0.117477	Rara	ENSMUST00000161521.1|Atrip|ENSMUSG00000025646.2|ATR interacting protein 	ENSMUST00000045011.2|Atrip|ENSMUSG00000025646.2|ATR interacting protein
mm10_v2_chr3_+_79884576_79884597	0.116729	Rara	ENSMUST00000145992.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chrX_-_75874536_75874590	0.106486	Rara	ENSMUST00000033547.7|Pls3|ENSMUSG00000016382.9|plastin 3 (T-isoform)
mm10_v2_chr12_-_54862783_54862921	0.10449	Rara	ENSMUST00000078124.7|Cfl2|ENSMUSG00000062929.7|cofilin 2, muscle
mm10_v2_chr14_-_74947865_74947883	0.0936145	Rara	ENSMUST00000088970.5|Lrch1|ENSMUSG00000068015.6|leucine-rich repeats and calponin homology (CH) domain containing 1
mm10_v2_chr7_+_120635176_120635251	0.0898326	Rara	ENSMUST00000033176.5|Uqcrc2|ENSMUSG00000030884.5|ubiquinol cytochrome c reductase core protein 2
mm10_v2_chr4_+_32238950_32238964	0.0842255	Rara	ENSMUST00000037416.6|Bach2|ENSMUSG00000040270.10|BTB and CNC homology 2
mm10_v2_chr10_+_79910856_79910856	0.078673	Rara	ENSMUST00000181321.1|Gm26602|ENSMUSG00000097854.1|predicted gene, 26602
mm10_v2_chr14_-_70207637_70207675	0.0776732	Rara	ENSMUST00000022682.5|Sorbs3|ENSMUSG00000022091.5|sorbin and SH3 domain containing 3
mm10_v2_chr19_-_7241216_7241226	0.0697353	Rara	ENSMUST00000025675.9|Naa40|ENSMUSG00000024764.9|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
mm10_v2_chr2_+_181365384_181365414	0.0651563	Rara	ENSMUST00000108807.2|Zgpat|ENSMUSG00000027582.10|zinc finger, CCCH-type with G patch domain
mm10_v2_chr3_+_152210458_152210534	0.0620671	Rara	ENSMUST00000166984.1|Fubp1|ENSMUSG00000028034.9|far upstream element (FUSE) binding protein 1 	ENSMUST00000106121.1|Fubp1|ENSMUSG00000028034.9|far upstream element (FUSE) binding protein 1
mm10_v2_chr2_+_173719415_173719437	0.060138	Rara	ENSMUST00000073081.5|1700010B08Rik|ENSMUSG00000057047.5|RIKEN cDNA 1700010B08 gene
mm10_v2_chr4_+_141444654_141444714	0.0565803	Rara	ENSMUST00000006377.6|Zbtb17|ENSMUSG00000006215.6|zinc finger and BTB domain containing 17
mm10_v2_chr13_+_49421229_49421311	0.0546335	Rara	ENSMUST00000021817.8|Ippk|ENSMUSG00000021385.9|inositol 1,3,4,5,6-pentakisphosphate 2-kinase
mm10_v2_chr5_+_53590215_53590351	0.0521299	Rara	ENSMUST00000037618.6|Rbpj|ENSMUSG00000039191.6|recombination signal binding protein for immunoglobulin kappa J region
mm10_v2_chr17_+_34593388_34593417	0.0455152	Rara	ENSMUST00000174532.1|Pbx2|ENSMUSG00000034673.8|pre B cell leukemia homeobox 2
mm10_v2_chr15_-_102366314_102366338	0.039765	Rara	ENSMUST00000078508.5|Sp7|ENSMUSG00000060284.6|Sp7 transcription factor 7
mm10_v2_chr2_+_26319741_26319773	0.0386964	Rara	ENSMUST00000066889.6|Gpsm1|ENSMUSG00000026930.9|G-protein signalling modulator 1 (AGS3-like, C. elegans)
mm10_v2_chr14_-_30353468_30353535	0.0255816	Rara	ENSMUST00000112249.1|Cacna1d|ENSMUSG00000015968.10|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm10_v2_chr8_-_94876269_94876321	0.0202517	Rara	ENSMUST00000046461.7|Dok4|ENSMUSG00000040631.7|docking protein 4
mm10_v2_chr14_-_16575456_16575501	0.0147654	Rara	ENSMUST00000063750.6|Rarb|ENSMUSG00000017491.8|retinoic acid receptor, beta
mm10_v2_chr11_+_4986824_4986894	0.00994397	Rara	ENSMUST00000009234.9|Ap1b1|ENSMUSG00000009090.11|adaptor protein complex AP-1, beta 1 subunit 	ENSMUST00000109897.1|Ap1b1|ENSMUSG00000009090.11|adaptor protein complex AP-1, beta 1 subunit
mm10_v2_chr6_+_18848571_18848582	0.00773477	Rara	ENSMUST00000056398.8|Naa38|ENSMUSG00000044155.8|N(alpha)-acetyltransferase 38, NatC auxiliary subunit
mm10_v2_chr17_-_67632707_67632728	0.00613835	Rara	ENSMUST00000097290.2|Lrrc30|ENSMUSG00000073375.2|leucine rich repeat containing 30
mm10_v2_chr9_+_75410145_75410184	0.00608514	Rara	ENSMUST00000180533.1|4933433G15Rik|ENSMUSG00000097021.1|RIKEN cDNA 4933433G15 gene 	ENSMUST00000180574.1|4933433G15Rik|ENSMUSG00000097021.1|RIKEN cDNA 4933433G15 gene
mm10_v2_chr4_+_32238713_32238804	0.00304875	Rara	ENSMUST00000108180.2|Bach2|ENSMUSG00000040270.10|BTB and CNC homology 2
mm10_v2_chr1_-_163403627_163403679	0.00146423	Rara	ENSMUST00000045138.4|Gorab|ENSMUSG00000040124.4|golgin, RAB6-interacting
mm10_v2_chr7_-_18656720_18656728	0.00102296	Rara	ENSMUST00000094793.5|Psg21|ENSMUSG00000070796.5|pregnancy-specific glycoprotein 21 	ENSMUST00000182128.1|Psg21|ENSMUSG00000070796.5|pregnancy-specific glycoprotein 21
