mm10_v2_chr18_+_60925612_60925639	7.59452	Rfx3_Rfx1_Rfx4	ENSMUST00000102888.3|Camk2a|ENSMUSG00000024617.10|calcium/calmodulin-dependent protein kinase II alpha 	ENSMUST00000025519.4|Camk2a|ENSMUSG00000024617.10|calcium/calmodulin-dependent protein kinase II alpha
mm10_v2_chr11_-_6606053_6606053	3.20504	Rfx3_Rfx1_Rfx4	ENSMUST00000045713.3|Nacad|ENSMUSG00000041073.4|NAC alpha domain containing
mm10_v2_chr10_-_81472859_81473127	2.79282	Rfx3_Rfx1_Rfx4	ENSMUST00000147524.1|Celf5|ENSMUSG00000034818.10|CUGBP, Elav-like family member 5 	ENSMUST00000119060.1|Celf5|ENSMUSG00000034818.10|CUGBP, Elav-like family member 5
mm10_v2_chr7_+_126847908_126847962	2.64296	Rfx3_Rfx1_Rfx4	ENSMUST00000147257.1|Doc2a|ENSMUSG00000052301.8|double C2, alpha 	ENSMUST00000139174.1|Doc2a|ENSMUSG00000052301.8|double C2, alpha
mm10_v2_chr4_+_129960760_129960808	2.57584	Rfx3_Rfx1_Rfx4	ENSMUST00000139884.1|1700003M07Rik|ENSMUSG00000085389.1|RIKEN cDNA 1700003M07 gene
mm10_v2_chr15_+_98167806_98167873	2.53414	Rfx3_Rfx1_Rfx4	ENSMUST00000031914.4|AI836003|ENSMUSG00000029875.4|expressed sequence AI836003
mm10_v2_chr11_-_97352016_97352016	2.37288	Rfx3_Rfx1_Rfx4	ENSMUST00000093942.4|Gpr179|ENSMUSG00000070337.4|G protein-coupled receptor 179
mm10_v2_chr5_+_30711849_30711905	2.16946	Rfx3_Rfx1_Rfx4	ENSMUST00000088081.4|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5 	ENSMUST00000101442.3|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5
mm10_v2_chr5_+_30711564_30711586	2.15966	Rfx3_Rfx1_Rfx4	ENSMUST00000114729.1|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5
mm10_v2_chr2_+_163506808_163506860	2.09616	Rfx3_Rfx1_Rfx4	ENSMUST00000143911.1|Hnf4a|ENSMUSG00000017950.10|hepatic nuclear factor 4, alpha
mm10_v2_chr9_+_44066993_44067024	2.06769	Rfx3_Rfx1_Rfx4	ENSMUST00000034508.7|Usp2|ENSMUSG00000032010.8|ubiquitin specific peptidase 2
mm10_v2_chr13_+_55464237_55464319	2.06489	Rfx3_Rfx1_Rfx4	ENSMUST00000046533.7|Prr7|ENSMUSG00000034686.7|proline rich 7 (synaptic)
mm10_v2_chr15_+_82256023_82256130	2.03761	Rfx3_Rfx1_Rfx4	ENSMUST00000143238.1|1500009C09Rik|ENSMUSG00000068099.4|RIKEN cDNA 1500009C09 gene
mm10_v2_chr10_+_81070035_81070121	2.0074	Rfx3_Rfx1_Rfx4	ENSMUST00000005057.6|Thop1|ENSMUSG00000004929.6|thimet oligopeptidase 1
mm10_v2_chr11_-_61453992_61454106	1.93451	Rfx3_Rfx1_Rfx4	ENSMUST00000060255.7|Rnf112|ENSMUSG00000010086.11|ring finger protein 112 	ENSMUST00000054927.7|Rnf112|ENSMUSG00000010086.11|ring finger protein 112 	ENSMUST00000102661.3|Rnf112|ENSMUSG00000010086.11|ring finger protein 112
mm10_v2_chr15_+_78428564_78428636	1.93194	Rfx3_Rfx1_Rfx4	ENSMUST00000166142.2|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17 	ENSMUST00000162517.1|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17 	ENSMUST00000089414.4|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17
mm10_v2_chr15_+_78428650_78428671	1.77393	Rfx3_Rfx1_Rfx4	ENSMUST00000159771.1|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17
mm10_v2_chr11_-_71033462_71033513	1.77257	Rfx3_Rfx1_Rfx4	ENSMUST00000156068.2|6330403K07Rik|ENSMUSG00000018451.6|RIKEN cDNA 6330403K07 gene
mm10_v2_chr14_-_118923070_118923167	1.76504	Rfx3_Rfx1_Rfx4	ENSMUST00000047208.5|Dzip1|ENSMUSG00000042156.9|DAZ interacting protein 1
mm10_v2_chr2_-_21205342_21205371	1.69451	Rfx3_Rfx1_Rfx4	ENSMUST00000027992.2|Enkur|ENSMUSG00000026679.3|enkurin, TRPC channel interacting protein
mm10_v2_chr2_+_152962485_152962510	1.65167	Rfx3_Rfx1_Rfx4	ENSMUST00000099197.2|Ttll9|ENSMUSG00000074673.9|tubulin tyrosine ligase-like family, member 9 	ENSMUST00000103155.3|Ttll9|ENSMUSG00000074673.9|tubulin tyrosine ligase-like family, member 9
mm10_v2_chr5_+_21424934_21425013	1.63569	Rfx3_Rfx1_Rfx4	ENSMUST00000056045.4|Fam185a|ENSMUSG00000047221.5|family with sequence similarity 185, member A
mm10_v2_chr4_+_135495979_135496016	1.60902	Rfx3_Rfx1_Rfx4	ENSMUST00000063707.2|Stpg1|ENSMUSG00000028801.8|sperm tail PG rich repeat containing 1
mm10_v2_chr6_-_39557830_39557867	1.54066	Rfx3_Rfx1_Rfx4	ENSMUST00000036877.3|Dennd2a|ENSMUSG00000038456.3|DENN/MADD domain containing 2A 	ENSMUST00000154149.1|Dennd2a|ENSMUSG00000038456.3|DENN/MADD domain containing 2A
mm10_v2_chr7_-_109439076_109439083	1.53387	Rfx3_Rfx1_Rfx4	ENSMUST00000106745.2|Stk33|ENSMUSG00000031027.9|serine/threonine kinase 33 	ENSMUST00000090414.4|Stk33|ENSMUSG00000031027.9|serine/threonine kinase 33
mm10_v2_chr12_+_80518990_80519087	1.52978	Rfx3_Rfx1_Rfx4	ENSMUST00000021558.6|Galnt16|ENSMUSG00000021130.7|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16
mm10_v2_chr1_-_172329261_172329307	1.45303	Rfx3_Rfx1_Rfx4	ENSMUST00000062387.2|Kcnj9|ENSMUSG00000038026.7|potassium inwardly-rectifying channel, subfamily J, member 9
mm10_v2_chr4_-_43031370_43031427	1.43772	Rfx3_Rfx1_Rfx4	ENSMUST00000138030.1|Stoml2|ENSMUSG00000028455.9|stomatin (Epb7.2)-like 2
mm10_v2_chr1_+_66386968_66386999	1.43347	Rfx3_Rfx1_Rfx4	ENSMUST00000145419.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr1_+_191821444_191821489	1.41355	Rfx3_Rfx1_Rfx4	ENSMUST00000027931.7|Nek2|ENSMUSG00000026622.9|NIMA (never in mitosis gene a)-related expressed kinase 2
mm10_v2_chr17_+_34629533_34629620	1.39602	Rfx3_Rfx1_Rfx4	ENSMUST00000015620.6|Prrt1|ENSMUSG00000015476.6|proline-rich transmembrane protein 1
mm10_v2_chr4_-_128962420_128962449	1.392	Rfx3_Rfx1_Rfx4	ENSMUST00000119354.1|Adc|ENSMUSG00000028789.10|arginine decarboxylase 	ENSMUST00000106068.1|Adc|ENSMUSG00000028789.10|arginine decarboxylase 	ENSMUST00000030581.3|Adc|ENSMUSG00000028789.10|arginine decarboxylase
mm10_v2_chr11_+_70029742_70029837	1.2832	Rfx3_Rfx1_Rfx4	ENSMUST00000132597.2|Dlg4|ENSMUSG00000020886.10|discs, large homolog 4 (Drosophila)
mm10_v2_chr7_-_109438786_109438837	1.27909	Rfx3_Rfx1_Rfx4	ENSMUST00000121748.1|Stk33|ENSMUSG00000031027.9|serine/threonine kinase 33
mm10_v2_chr19_-_46327121_46327156	1.27048	Rfx3_Rfx1_Rfx4	ENSMUST00000041391.4|Psd|ENSMUSG00000037126.9|pleckstrin and Sec7 domain containing 	ENSMUST00000096029.5|Psd|ENSMUSG00000037126.9|pleckstrin and Sec7 domain containing
mm10_v2_chr10_+_39133981_39134031	1.23944	Rfx3_Rfx1_Rfx4	ENSMUST00000019991.7|Tube1|ENSMUSG00000019845.7|epsilon-tubulin 1
mm10_v2_chr9_+_44067072_44067134	1.20875	Rfx3_Rfx1_Rfx4	ENSMUST00000177054.1|Usp2|ENSMUSG00000032010.8|ubiquitin specific peptidase 2
mm10_v2_chr16_+_17646464_17646507	1.20722	Rfx3_Rfx1_Rfx4	ENSMUST00000056962.4|Ccdc74a|ENSMUSG00000041617.4|coiled-coil domain containing 74A
mm10_v2_chr9_+_47530173_47530373	1.19525	Rfx3_Rfx1_Rfx4	ENSMUST00000114548.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000152459.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000143026.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000085909.2|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000114547.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000034581.3|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1
mm10_v2_chr16_+_17646564_17646620	1.18946	Rfx3_Rfx1_Rfx4	ENSMUST00000182117.1|Ccdc74a|ENSMUSG00000041617.4|coiled-coil domain containing 74A 	ENSMUST00000182671.1|Ccdc74a|ENSMUSG00000041617.4|coiled-coil domain containing 74A 	ENSMUST00000182344.1|Ccdc74a|ENSMUSG00000041617.4|coiled-coil domain containing 74A
mm10_v2_chr9_-_61946768_61946799	1.18149	Rfx3_Rfx1_Rfx4	ENSMUST00000034815.7|Kif23|ENSMUSG00000032254.9|kinesin family member 23
mm10_v2_chr17_+_12119274_12119348	1.18094	Rfx3_Rfx1_Rfx4	ENSMUST00000024594.2|Agpat4|ENSMUSG00000023827.2|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
mm10_v2_chr5_-_142550965_142551110	1.17555	Rfx3_Rfx1_Rfx4	ENSMUST00000129212.1|Radil|ENSMUSG00000029576.11|Ras association and DIL domains 	ENSMUST00000110785.1|Radil|ENSMUSG00000029576.11|Ras association and DIL domains 	ENSMUST00000063635.8|Radil|ENSMUSG00000029576.11|Ras association and DIL domains
mm10_v2_chr17_+_56304313_56304407	1.17326	Rfx3_Rfx1_Rfx4	ENSMUST00000113035.1|Uhrf1|ENSMUSG00000001228.8|ubiquitin-like, containing PHD and RING finger domains, 1 	ENSMUST00000113039.2|Uhrf1|ENSMUSG00000001228.8|ubiquitin-like, containing PHD and RING finger domains, 1 	ENSMUST00000142387.1|Uhrf1|ENSMUSG00000001228.8|ubiquitin-like, containing PHD and RING finger domains, 1
mm10_v2_chr5_-_124187150_124187225	1.16963	Rfx3_Rfx1_Rfx4	ENSMUST00000161938.1|Pitpnm2|ENSMUSG00000029406.9|phosphatidylinositol transfer protein, membrane-associated 2
mm10_v2_chr15_+_79229140_79229173	1.14306	Rfx3_Rfx1_Rfx4	ENSMUST00000163571.1|Pick1|ENSMUSG00000068206.6|protein interacting with C kinase 1
mm10_v2_chr1_+_172482199_172482314	1.13794	Rfx3_Rfx1_Rfx4	ENSMUST00000135267.1|Igsf9|ENSMUSG00000037995.9|immunoglobulin superfamily, member 9 	ENSMUST00000052629.6|Igsf9|ENSMUSG00000037995.9|immunoglobulin superfamily, member 9 	ENSMUST00000111235.2|Igsf9|ENSMUSG00000037995.9|immunoglobulin superfamily, member 9
mm10_v2_chr3_+_124321031_124321113	1.12829	Rfx3_Rfx1_Rfx4	ENSMUST00000058994.4|Tram1l1|ENSMUSG00000044528.4|translocation associated membrane protein 1-like 1
mm10_v2_chr8_-_27202542_27202557	1.12544	Rfx3_Rfx1_Rfx4	ENSMUST00000038174.6|Got1l1|ENSMUSG00000039720.6|glutamic-oxaloacetic transaminase 1-like 1
mm10_v2_chr2_+_109280738_109280798	1.12016	Rfx3_Rfx1_Rfx4	ENSMUST00000028527.7|Kif18a|ENSMUSG00000027115.8|kinesin family member 18A
mm10_v2_chr4_-_43031429_43031456	1.11344	Rfx3_Rfx1_Rfx4	ENSMUST00000136326.1|Stoml2|ENSMUSG00000028455.9|stomatin (Epb7.2)-like 2
mm10_v2_chr17_+_71183545_71183570	1.10467	Rfx3_Rfx1_Rfx4	ENSMUST00000156570.1|Lpin2|ENSMUSG00000024052.11|lipin 2
mm10_v2_chr17_+_27685197_27685233	1.08841	Rfx3_Rfx1_Rfx4	ENSMUST00000097360.2|Pacsin1|ENSMUSG00000040276.8|protein kinase C and casein kinase substrate in neurons 1
mm10_v2_chr15_+_79229363_79229439	1.0813	Rfx3_Rfx1_Rfx4	ENSMUST00000018295.7|Pick1|ENSMUSG00000068206.6|protein interacting with C kinase 1 	ENSMUST00000053926.5|Pick1|ENSMUSG00000068206.6|protein interacting with C kinase 1
mm10_v2_chr7_-_109438998_109439017	1.08082	Rfx3_Rfx1_Rfx4	ENSMUST00000121378.1|Stk33|ENSMUSG00000031027.9|serine/threonine kinase 33
mm10_v2_chr8_-_92355764_92355891	1.07069	Rfx3_Rfx1_Rfx4	ENSMUST00000180102.1|4933436C20Rik|ENSMUSG00000031736.4|RIKEN cDNA 4933436C20 gene 	ENSMUST00000179421.1|4933436C20Rik|ENSMUSG00000031736.4|RIKEN cDNA 4933436C20 gene 	ENSMUST00000179222.1|4933436C20Rik|ENSMUSG00000031736.4|RIKEN cDNA 4933436C20 gene 	ENSMUST00000179029.1|4933436C20Rik|ENSMUSG00000031736.4|RIKEN cDNA 4933436C20 gene
mm10_v2_chr7_-_45830776_45830944	1.05864	Rfx3_Rfx1_Rfx4	ENSMUST00000107723.2|Grwd1|ENSMUSG00000053801.10|glutamate-rich WD repeat containing 1 	ENSMUST00000131384.1|Grwd1|ENSMUSG00000053801.10|glutamate-rich WD repeat containing 1
mm10_v2_chr5_+_33983534_33983548	1.05296	Rfx3_Rfx1_Rfx4	ENSMUST00000114382.1|Gm1673|ENSMUSG00000070858.5|predicted gene 1673
mm10_v2_chr11_-_116335384_116335399	1.05192	Rfx3_Rfx1_Rfx4	ENSMUST00000036215.7|Foxj1|ENSMUSG00000034227.7|forkhead box J1
mm10_v2_chr12_-_72070991_72071079	1.04029	Rfx3_Rfx1_Rfx4	ENSMUST00000050649.4|Gpr135|ENSMUSG00000043398.4|G protein-coupled receptor 135
mm10_v2_chr4_-_117125618_117125683	1.01803	Rfx3_Rfx1_Rfx4	ENSMUST00000183310.1|Btbd19|ENSMUSG00000073771.5|BTB (POZ) domain containing 19
mm10_v2_chr7_+_82648595_82648653	1.01272	Rfx3_Rfx1_Rfx4	ENSMUST00000141726.1|Eftud1|ENSMUSG00000038563.7|elongation factor Tu GTP binding domain containing 1 	ENSMUST00000179489.1|Eftud1|ENSMUSG00000038563.7|elongation factor Tu GTP binding domain containing 1 	ENSMUST00000039881.3|Eftud1|ENSMUSG00000038563.7|elongation factor Tu GTP binding domain containing 1
mm10_v2_chr8_+_119575235_119575340	1.00476	Rfx3_Rfx1_Rfx4	ENSMUST00000093100.2|Dnaaf1|ENSMUSG00000031831.6|dynein, axonemal assembly factor 1
mm10_v2_chr8_-_4259257_4259283	0.964425	Rfx3_Rfx1_Rfx4	ENSMUST00000053252.7|Ctxn1|ENSMUSG00000048644.7|cortexin 1
mm10_v2_chr5_-_136170634_136170661	0.963388	Rfx3_Rfx1_Rfx4	ENSMUST00000041048.1|Orai2|ENSMUSG00000039747.7|ORAI calcium release-activated calcium modulator 2
mm10_v2_chr13_-_100775844_100775899	0.94409	Rfx3_Rfx1_Rfx4	ENSMUST00000075550.3|Cenph|ENSMUSG00000045273.8|centromere protein H
mm10_v2_chr8_-_40308331_40308331	0.941728	Rfx3_Rfx1_Rfx4	ENSMUST00000118639.1|Fgf20|ENSMUSG00000031603.8|fibroblast growth factor 20
mm10_v2_chr7_+_45785331_45785390	0.931418	Rfx3_Rfx1_Rfx4	ENSMUST00000120005.1|Lmtk3|ENSMUSG00000062044.7|lemur tyrosine kinase 3 	ENSMUST00000123585.1|Lmtk3|ENSMUSG00000062044.7|lemur tyrosine kinase 3
mm10_v2_chr8_+_69832633_69832712	0.930719	Rfx3_Rfx1_Rfx4	ENSMUST00000131637.2|Pbx4|ENSMUSG00000031860.11|pre B cell leukemia homeobox 4 	ENSMUST00000081503.6|Pbx4|ENSMUSG00000031860.11|pre B cell leukemia homeobox 4
mm10_v2_chr2_-_29055051_29055079	0.926902	Rfx3_Rfx1_Rfx4	ENSMUST00000113843.1|1700101E01Rik|ENSMUSG00000079502.2|RIKEN cDNA 1700101E01 gene 	ENSMUST00000157048.2|1700101E01Rik|ENSMUSG00000079502.2|RIKEN cDNA 1700101E01 gene
mm10_v2_chr12_-_103738158_103738158	0.920787	Rfx3_Rfx1_Rfx4	ENSMUST00000095450.4|Serpina1b|ENSMUSG00000071178.5|serine (or cysteine) preptidase inhibitor, clade A, member 1B
mm10_v2_chr7_+_99268338_99268388	0.918934	Rfx3_Rfx1_Rfx4	ENSMUST00000107100.2|Map6|ENSMUSG00000055407.7|microtubule-associated protein 6
mm10_v2_chr10_+_33905015_33905111	0.913624	Rfx3_Rfx1_Rfx4	ENSMUST00000169670.1|Rsph4a|ENSMUSG00000039552.7|radial spoke head 4 homolog A (Chlamydomonas)
mm10_v2_chr15_+_54745702_54745702	0.908533	Rfx3_Rfx1_Rfx4	ENSMUST00000050027.8|Nov|ENSMUSG00000037362.8|nephroblastoma overexpressed gene
mm10_v2_chr2_+_91922178_91922194	0.907889	Rfx3_Rfx1_Rfx4	ENSMUST00000170432.1|Chrm4|ENSMUSG00000040495.3|cholinergic receptor, muscarinic 4
mm10_v2_chrX_+_7919816_7919905	0.906752	Rfx3_Rfx1_Rfx4	ENSMUST00000041096.3|Pcsk1n|ENSMUSG00000039278.10|proprotein convertase subtilisin/kexin type 1 inhibitor
mm10_v2_chr5_+_123252087_123252136	0.904128	Rfx3_Rfx1_Rfx4	ENSMUST00000121964.1|Wdr66|ENSMUSG00000029442.12|WD repeat domain 66
mm10_v2_chr11_+_102248842_102248888	0.900109	Rfx3_Rfx1_Rfx4	ENSMUST00000100392.4|BC030867|ENSMUSG00000034773.10|cDNA sequence BC030867
mm10_v2_chr7_-_118855984_118856014	0.897807	Rfx3_Rfx1_Rfx4	ENSMUST00000116280.2|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1 	ENSMUST00000106550.3|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1 	ENSMUST00000063607.5|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1
mm10_v2_chr5_-_48889531_48889557	0.894448	Rfx3_Rfx1_Rfx4	ENSMUST00000176978.1|Kcnip4|ENSMUSG00000029088.10|Kv channel interacting protein 4
mm10_v2_chr11_-_101551837_101551893	0.892458	Rfx3_Rfx1_Rfx4	ENSMUST00000017290.4|Brca1|ENSMUSG00000017146.6|breast cancer 1
mm10_v2_chrX_-_136993027_136993089	0.882354	Rfx3_Rfx1_Rfx4	ENSMUST00000171738.1|Slc25a53|ENSMUSG00000044348.8|solute carrier family 25, member 53 	ENSMUST00000056674.5|Slc25a53|ENSMUSG00000044348.8|solute carrier family 25, member 53 	ENSMUST00000129807.1|Slc25a53|ENSMUSG00000044348.8|solute carrier family 25, member 53
mm10_v2_chr17_+_84626458_84626512	0.870835	Rfx3_Rfx1_Rfx4	ENSMUST00000025101.8|Dync2li1|ENSMUSG00000024253.8|dynein cytoplasmic 2 light intermediate chain 1
mm10_v2_chr9_+_82829806_82829834	0.867339	Rfx3_Rfx1_Rfx4	ENSMUST00000113245.2|Irak1bp1|ENSMUSG00000032251.6|interleukin-1 receptor-associated kinase 1 binding protein 1 	ENSMUST00000034783.4|Irak1bp1|ENSMUSG00000032251.6|interleukin-1 receptor-associated kinase 1 binding protein 1
mm10_v2_chr12_-_103773592_103773610	0.862487	Rfx3_Rfx1_Rfx4	ENSMUST00000078869.5|Serpina1d|ENSMUSG00000071177.4|serine (or cysteine) peptidase inhibitor, clade A, member 1D
mm10_v2_chr1_-_75180349_75180407	0.862299	Rfx3_Rfx1_Rfx4	ENSMUST00000027396.8|Abcb6|ENSMUSG00000026198.9|ATP-binding cassette, sub-family B (MDR/TAP), member 6
mm10_v2_chr10_+_42860648_42860676	0.854024	Rfx3_Rfx1_Rfx4	ENSMUST00000105495.1|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr7_-_13054665_13054764	0.853008	Rfx3_Rfx1_Rfx4	ENSMUST00000182515.1|Mzf1|ENSMUSG00000030380.10|myeloid zinc finger 1 	ENSMUST00000069289.8|Mzf1|ENSMUSG00000030380.10|myeloid zinc finger 1
mm10_v2_chr12_-_103956891_103956901	0.852797	Rfx3_Rfx1_Rfx4	ENSMUST00000085054.4|Serpina1e|ENSMUSG00000072849.4|serine (or cysteine) peptidase inhibitor, clade A, member 1E
mm10_v2_chr2_-_5714490_5714538	0.852794	Rfx3_Rfx1_Rfx4	ENSMUST00000044009.7|Camk1d|ENSMUSG00000039145.10|calcium/calmodulin-dependent protein kinase ID
mm10_v2_chr14_-_8309770_8309795	0.851824	Rfx3_Rfx1_Rfx4	ENSMUST00000121887.1|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A 	ENSMUST00000036070.8|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A 	ENSMUST00000137133.1|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A
mm10_v2_chr11_-_69413675_69413675	0.851176	Rfx3_Rfx1_Rfx4	ENSMUST00000094077.4|Kdm6b|ENSMUSG00000018476.7|KDM1 lysine (K)-specific demethylase 6B
mm10_v2_chr7_-_13054514_13054514	0.841789	Rfx3_Rfx1_Rfx4	ENSMUST00000182087.1|Mzf1|ENSMUSG00000030380.10|myeloid zinc finger 1
mm10_v2_chr5_-_139460501_139460549	0.838523	Rfx3_Rfx1_Rfx4	ENSMUST00000066052.7|3110082I17Rik|ENSMUSG00000053553.7|RIKEN cDNA 3110082I17 gene
mm10_v2_chr16_-_4523056_4523075	0.830337	Rfx3_Rfx1_Rfx4	ENSMUST00000090500.3|Srl|ENSMUSG00000022519.7|sarcalumenin 	ENSMUST00000023161.7|Srl|ENSMUSG00000022519.7|sarcalumenin
mm10_v2_chr6_-_122340200_122340244	0.827709	Rfx3_Rfx1_Rfx4	ENSMUST00000159384.1|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr5_-_138172383_138172422	0.826637	Rfx3_Rfx1_Rfx4	ENSMUST00000000505.9|Mcm7|ENSMUSG00000029730.10|minichromosome maintenance deficient 7 (S. cerevisiae)
mm10_v2_chr15_+_89532816_89532890	0.813929	Rfx3_Rfx1_Rfx4	ENSMUST00000167173.1|Shank3|ENSMUSG00000022623.9|SH3/ankyrin domain gene 3
mm10_v2_chr10_+_80295930_80296003	0.812979	Rfx3_Rfx1_Rfx4	ENSMUST00000105359.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2
mm10_v2_chr12_-_103863551_103863630	0.808416	Rfx3_Rfx1_Rfx4	ENSMUST00000085056.6|Serpina1a|ENSMUSG00000066366.8|serine (or cysteine) peptidase inhibitor, clade A, member 1A 	ENSMUST00000072876.5|Serpina1a|ENSMUSG00000066366.8|serine (or cysteine) peptidase inhibitor, clade A, member 1A 	ENSMUST00000124717.1|Serpina1a|ENSMUSG00000066366.8|serine (or cysteine) peptidase inhibitor, clade A, member 1A
mm10_v2_chr12_+_84361968_84362018	0.805837	Rfx3_Rfx1_Rfx4	ENSMUST00000021661.6|Coq6|ENSMUSG00000021235.7|coenzyme Q6 homolog (yeast)
mm10_v2_chr12_+_84362029_84362064	0.801728	Rfx3_Rfx1_Rfx4	ENSMUST00000110278.1|Coq6|ENSMUSG00000021235.7|coenzyme Q6 homolog (yeast) 	ENSMUST00000145522.1|Coq6|ENSMUSG00000021235.7|coenzyme Q6 homolog (yeast)
mm10_v2_chr4_-_141933080_141933095	0.801608	Rfx3_Rfx1_Rfx4	ENSMUST00000036701.7|Fhad1|ENSMUSG00000051435.5|forkhead-associated (FHA) phosphopeptide binding domain 1
mm10_v2_chr11_+_20647149_20647156	0.799503	Rfx3_Rfx1_Rfx4	ENSMUST00000109585.1|Sertad2|ENSMUSG00000049800.7|SERTA domain containing 2
mm10_v2_chr12_-_110889119_110889145	0.7969	Rfx3_Rfx1_Rfx4	ENSMUST00000043716.8|Cinp|ENSMUSG00000021276.9|cyclin-dependent kinase 2 interacting protein
mm10_v2_chr19_-_41896132_41896155	0.796108	Rfx3_Rfx1_Rfx4	ENSMUST00000038677.3|Rrp12|ENSMUSG00000035049.3|ribosomal RNA processing 12 homolog (S. cerevisiae)
mm10_v2_chr12_+_84361636_84361657	0.786828	Rfx3_Rfx1_Rfx4	ENSMUST00000110276.1|Coq6|ENSMUSG00000021235.7|coenzyme Q6 homolog (yeast)
mm10_v2_chr7_-_118855602_118855695	0.784204	Rfx3_Rfx1_Rfx4	ENSMUST00000106549.1|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1 	ENSMUST00000126792.1|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1
mm10_v2_chr18_-_43687695_43687773	0.773311	Rfx3_Rfx1_Rfx4	ENSMUST00000082254.6|Jakmip2|ENSMUSG00000024502.9|janus kinase and microtubule interacting protein 2
mm10_v2_chr19_+_47178820_47178997	0.753284	Rfx3_Rfx1_Rfx4	ENSMUST00000111808.3|Neurl1a|ENSMUSG00000006435.9|neuralized homolog 1A (Drosophila)
mm10_v2_chr7_-_80901220_80901269	0.751307	Rfx3_Rfx1_Rfx4	ENSMUST00000146402.1|Wdr73|ENSMUSG00000025722.10|WD repeat domain 73 	ENSMUST00000026816.8|Wdr73|ENSMUSG00000025722.10|WD repeat domain 73
mm10_v2_chr9_+_122951051_122951106	0.746636	Rfx3_Rfx1_Rfx4	ENSMUST00000040717.5|Kif15|ENSMUSG00000036768.5|kinesin family member 15
mm10_v2_chr11_-_66168505_66168533	0.744667	Rfx3_Rfx1_Rfx4	ENSMUST00000080665.3|Dnah9|ENSMUSG00000056752.10|dynein, axonemal, heavy chain 9
mm10_v2_chr4_+_123016590_123016613	0.739339	Rfx3_Rfx1_Rfx4	ENSMUST00000102649.3|Trit1|ENSMUSG00000028653.10|tRNA isopentenyltransferase 1
mm10_v2_chr5_+_33983437_33983529	0.735273	Rfx3_Rfx1_Rfx4	ENSMUST00000114384.1|Gm1673|ENSMUSG00000070858.5|predicted gene 1673 	ENSMUST00000094869.5|Gm1673|ENSMUSG00000070858.5|predicted gene 1673 	ENSMUST00000114383.1|Gm1673|ENSMUSG00000070858.5|predicted gene 1673
mm10_v2_chr15_+_79141324_79141358	0.733598	Rfx3_Rfx1_Rfx4	ENSMUST00000040077.6|Polr2f|ENSMUSG00000033020.6|polymerase (RNA) II (DNA directed) polypeptide F
mm10_v2_chr8_-_95142477_95142577	0.729032	Rfx3_Rfx1_Rfx4	ENSMUST00000034240.7|Kifc3|ENSMUSG00000031788.7|kinesin family member C3 	ENSMUST00000169748.1|Kifc3|ENSMUSG00000031788.7|kinesin family member C3
mm10_v2_chr9_+_74953053_74953091	0.72749	Rfx3_Rfx1_Rfx4	ENSMUST00000170846.1|Fam214a|ENSMUSG00000034858.9|family with sequence similarity 214, member A
mm10_v2_chr17_+_49615104_49615172	0.726526	Rfx3_Rfx1_Rfx4	ENSMUST00000162854.1|Kif6|ENSMUSG00000023999.8|kinesin family member 6
mm10_v2_chr14_+_77156733_77156823	0.719505	Rfx3_Rfx1_Rfx4	ENSMUST00000022589.7|Enox1|ENSMUSG00000022012.8|ecto-NOX disulfide-thiol exchanger 1
mm10_v2_chr14_-_99099701_99099785	0.718614	Rfx3_Rfx1_Rfx4	ENSMUST00000042471.9|Dis3|ENSMUSG00000033166.10|DIS3 mitotic control homolog (S. cerevisiae)
mm10_v2_chr2_-_167492826_167492891	0.718277	Rfx3_Rfx1_Rfx4	ENSMUST00000109211.2|Spata2|ENSMUSG00000047030.9|spermatogenesis associated 2 	ENSMUST00000057627.9|Spata2|ENSMUSG00000047030.9|spermatogenesis associated 2
mm10_v2_chr7_+_19176416_19176440	0.716553	Rfx3_Rfx1_Rfx4	ENSMUST00000117338.1|Eml2|ENSMUSG00000040811.9|echinoderm microtubule associated protein like 2
mm10_v2_chr15_+_100761741_100761797	0.712386	Rfx3_Rfx1_Rfx4	ENSMUST00000023776.6|Slc4a8|ENSMUSG00000023032.6|solute carrier family 4 (anion exchanger), member 8
mm10_v2_chr11_-_45955183_45955193	0.711356	Rfx3_Rfx1_Rfx4	ENSMUST00000109254.1|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr7_-_48881596_48881619	0.709096	Rfx3_Rfx1_Rfx4	ENSMUST00000119223.1|E2f8|ENSMUSG00000046179.11|E2F transcription factor 8
mm10_v2_chr6_-_102464667_102464667	0.708222	Rfx3_Rfx1_Rfx4	ENSMUST00000032159.6|Cntn3|ENSMUSG00000030075.8|contactin 3
mm10_v2_chrX_-_152368680_152368740	0.694694	Rfx3_Rfx1_Rfx4	ENSMUST00000070316.5|Gpr173|ENSMUSG00000056679.7|G-protein coupled receptor 173
mm10_v2_chr10_-_117063764_117063814	0.693182	Rfx3_Rfx1_Rfx4	ENSMUST00000047672.7|Cct2|ENSMUSG00000034024.7|chaperonin containing Tcp1, subunit 2 (beta)
mm10_v2_chr2_-_118256929_118256973	0.688846	Rfx3_Rfx1_Rfx4	ENSMUST00000028820.6|Fsip1|ENSMUSG00000027344.7|fibrous sheath-interacting protein 1 	ENSMUST00000028821.3|Fsip1|ENSMUSG00000027344.7|fibrous sheath-interacting protein 1
mm10_v2_chr12_+_29528382_29528468	0.68396	Rfx3_Rfx1_Rfx4	ENSMUST00000049784.9|Myt1l|ENSMUSG00000061911.8|myelin transcription factor 1-like
mm10_v2_chr1_-_133921393_133921414	0.666689	Rfx3_Rfx1_Rfx4	ENSMUST00000048432.5|Prelp|ENSMUSG00000041577.5|proline arginine-rich end leucine-rich repeat
mm10_v2_chr15_-_58324161_58324178	0.666372	Rfx3_Rfx1_Rfx4	ENSMUST00000022985.1|Klhl38|ENSMUSG00000022357.2|kelch-like 38
mm10_v2_chr13_-_106936907_106936952	0.661731	Rfx3_Rfx1_Rfx4	ENSMUST00000080856.7|Ipo11|ENSMUSG00000042590.10|importin 11
mm10_v2_chr15_-_103215285_103215366	0.660456	Rfx3_Rfx1_Rfx4	ENSMUST00000122182.1|Cbx5|ENSMUSG00000009575.8|chromobox 5 	ENSMUST00000108813.3|Cbx5|ENSMUSG00000009575.8|chromobox 5 	ENSMUST00000127191.1|Cbx5|ENSMUSG00000009575.8|chromobox 5
mm10_v2_chr8_-_33747724_33747781	0.658654	Rfx3_Rfx1_Rfx4	ENSMUST00000179364.1|Smim18|ENSMUSG00000094500.1|small integral membrane protein 18
mm10_v2_chr11_-_72207413_72207488	0.649411	Rfx3_Rfx1_Rfx4	ENSMUST00000108505.1|4933427D14Rik|ENSMUSG00000020807.8|RIKEN cDNA 4933427D14 gene
mm10_v2_chr2_-_131160006_131160081	0.649108	Rfx3_Rfx1_Rfx4	ENSMUST00000103188.3|1700037H04Rik|ENSMUSG00000027327.10|RIKEN cDNA 1700037H04 gene 	ENSMUST00000133602.1|1700037H04Rik|ENSMUSG00000027327.10|RIKEN cDNA 1700037H04 gene 	ENSMUST00000028800.5|1700037H04Rik|ENSMUSG00000027327.10|RIKEN cDNA 1700037H04 gene
mm10_v2_chr17_-_45592485_45592497	0.647489	Rfx3_Rfx1_Rfx4	ENSMUST00000166119.1|Slc29a1|ENSMUSG00000023942.9|solute carrier family 29 (nucleoside transporters), member 1
mm10_v2_chr9_-_27155418_27155425	0.638924	Rfx3_Rfx1_Rfx4	ENSMUST00000167074.1|Jam3|ENSMUSG00000031990.8|junction adhesion molecule 3 	ENSMUST00000034472.8|Jam3|ENSMUSG00000031990.8|junction adhesion molecule 3
mm10_v2_chr10_-_79645732_79645744	0.636202	Rfx3_Rfx1_Rfx4	ENSMUST00000095464.2|Odf3l2|ENSMUSG00000035963.8|outer dense fiber of sperm tails 3-like 2
mm10_v2_chr3_-_108536466_108536536	0.630128	Rfx3_Rfx1_Rfx4	ENSMUST00000048012.6|5330417C22Rik|ENSMUSG00000040412.10|RIKEN cDNA 5330417C22 gene 	ENSMUST00000106626.2|5330417C22Rik|ENSMUSG00000040412.10|RIKEN cDNA 5330417C22 gene 	ENSMUST00000106625.3|5330417C22Rik|ENSMUSG00000040412.10|RIKEN cDNA 5330417C22 gene
mm10_v2_chr2_+_145934776_145934797	0.619303	Rfx3_Rfx1_Rfx4	ENSMUST00000126415.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene 	ENSMUST00000116398.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene
mm10_v2_chr12_-_103904887_103904955	0.617122	Rfx3_Rfx1_Rfx4	ENSMUST00000074051.5|Serpina1c|ENSMUSG00000079015.2|serine (or cysteine) peptidase inhibitor, clade A, member 1C
mm10_v2_chr7_-_118856254_118856373	0.615556	Rfx3_Rfx1_Rfx4	ENSMUST00000033277.7|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1
mm10_v2_chr10_-_79874233_79874439	0.610636	Rfx3_Rfx1_Rfx4	ENSMUST00000166023.1|BC005764|ENSMUSG00000035835.8|cDNA sequence BC005764 	ENSMUST00000167707.1|BC005764|ENSMUSG00000035835.8|cDNA sequence BC005764 	ENSMUST00000165601.1|BC005764|ENSMUSG00000035835.8|cDNA sequence BC005764
mm10_v2_chr7_-_48881032_48881050	0.609365	Rfx3_Rfx1_Rfx4	ENSMUST00000058745.8|E2f8|ENSMUSG00000046179.11|E2F transcription factor 8
mm10_v2_chr11_-_5950018_5950081	0.607504	Rfx3_Rfx1_Rfx4	ENSMUST00000102920.3|Gck|ENSMUSG00000041798.9|glucokinase
mm10_v2_chr2_-_5895319_5895432	0.604277	Rfx3_Rfx1_Rfx4	ENSMUST00000026926.4|Sec61a2|ENSMUSG00000025816.9|Sec61, alpha subunit 2 (S. cerevisiae) 	ENSMUST00000102981.3|Sec61a2|ENSMUSG00000025816.9|Sec61, alpha subunit 2 (S. cerevisiae)
mm10_v2_chr6_+_48593883_48593900	0.60068	Rfx3_Rfx1_Rfx4	ENSMUST00000154010.1|Repin1|ENSMUSG00000052751.10|replication initiator 1 	ENSMUST00000163452.1|Repin1|ENSMUSG00000052751.10|replication initiator 1 	ENSMUST00000118229.1|Repin1|ENSMUSG00000052751.10|replication initiator 1 	ENSMUST00000009420.8|Repin1|ENSMUSG00000052751.10|replication initiator 1
mm10_v2_chr6_+_48593927_48593952	0.598959	Rfx3_Rfx1_Rfx4	ENSMUST00000135151.1|Repin1|ENSMUSG00000052751.10|replication initiator 1
mm10_v2_chr10_-_39133848_39133912	0.598238	Rfx3_Rfx1_Rfx4	ENSMUST00000134279.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000139743.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000149949.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000124941.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000125042.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000063204.2|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B
mm10_v2_chr17_-_45592262_45592411	0.589219	Rfx3_Rfx1_Rfx4	ENSMUST00000164769.1|Slc29a1|ENSMUSG00000023942.9|solute carrier family 29 (nucleoside transporters), member 1
mm10_v2_chr17_-_45592569_45592581	0.583793	Rfx3_Rfx1_Rfx4	ENSMUST00000163492.1|Slc29a1|ENSMUSG00000023942.9|solute carrier family 29 (nucleoside transporters), member 1
mm10_v2_chr19_-_4839286_4839338	0.577959	Rfx3_Rfx1_Rfx4	ENSMUST00000037246.5|Ccs|ENSMUSG00000034108.5|copper chaperone for superoxide dismutase
mm10_v2_chr10_-_39133914_39133927	0.577628	Rfx3_Rfx1_Rfx4	ENSMUST00000135785.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B
mm10_v2_chr1_+_172481788_172481819	0.572145	Rfx3_Rfx1_Rfx4	ENSMUST00000127052.1|Igsf9|ENSMUSG00000037995.9|immunoglobulin superfamily, member 9
mm10_v2_chr3_-_88459047_88459101	0.568576	Rfx3_Rfx1_Rfx4	ENSMUST00000165898.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENSMUST00000127436.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm10_v2_chr4_+_117550326_117550409	0.56854	Rfx3_Rfx1_Rfx4	ENSMUST00000037127.8|Eri3|ENSMUSG00000033423.10|exoribonuclease 3
mm10_v2_chr10_+_42860348_42860377	0.565323	Rfx3_Rfx1_Rfx4	ENSMUST00000063063.7|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr9_-_50617228_50617289	0.564969	Rfx3_Rfx1_Rfx4	ENSMUST00000147671.1|AU019823|ENSMUSG00000059820.8|expressed sequence AU019823 	ENSMUST00000145139.1|AU019823|ENSMUSG00000059820.8|expressed sequence AU019823 	ENSMUST00000155435.1|AU019823|ENSMUSG00000059820.8|expressed sequence AU019823
mm10_v2_chr4_+_118620799_118620899	0.554399	Rfx3_Rfx1_Rfx4	ENSMUST00000030501.8|Ebna1bp2|ENSMUSG00000028729.9|EBNA1 binding protein 2
mm10_v2_chr3_-_88458876_88459043	0.551596	Rfx3_Rfx1_Rfx4	ENSMUST00000147200.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENSMUST00000169222.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm10_v2_chr15_-_75678732_75678805	0.551064	Rfx3_Rfx1_Rfx4	ENSMUST00000000958.8|Top1mt|ENSMUSG00000000934.8|DNA topoisomerase 1, mitochondrial
mm10_v2_chr10_+_87058043_87058067	0.549573	Rfx3_Rfx1_Rfx4	ENSMUST00000169849.1|1700113H08Rik|ENSMUSG00000047129.5|RIKEN cDNA 1700113H08 gene
mm10_v2_chr16_+_44394771_44394804	0.54406	Rfx3_Rfx1_Rfx4	ENSMUST00000099742.2|Wdr52|ENSMUSG00000071550.7|WD repeat domain 52
mm10_v2_chr16_+_3909032_3909106	0.542894	Rfx3_Rfx1_Rfx4	ENSMUST00000124849.1|Cluap1|ENSMUSG00000014232.8|clusterin associated protein 1
mm10_v2_chr3_+_82358056_82358075	0.539017	Rfx3_Rfx1_Rfx4	ENSMUST00000091014.4|Map9|ENSMUSG00000033900.8|microtubule-associated protein 9
mm10_v2_chr7_-_44375006_44375035	0.533999	Rfx3_Rfx1_Rfx4	ENSMUST00000107933.1|1700008O03Rik|ENSMUSG00000008028.9|RIKEN cDNA 1700008O03 gene
mm10_v2_chr14_+_50955992_50956169	0.531853	Rfx3_Rfx1_Rfx4	ENSMUST00000095925.4|Pnp2|ENSMUSG00000068417.7|purine-nucleoside phosphorylase 2
mm10_v2_chr5_+_124598749_124598798	0.527439	Rfx3_Rfx1_Rfx4	ENSMUST00000130912.1|Tctn2|ENSMUSG00000029386.9|tectonic family member 2 	ENSMUST00000100706.3|Tctn2|ENSMUSG00000029386.9|tectonic family member 2
mm10_v2_chr2_-_25580099_25580099	0.51979	Rfx3_Rfx1_Rfx4	ENSMUST00000114217.1|Gm996|ENSMUSG00000029419.7|predicted gene 996
mm10_v2_chr2_-_168601620_168601657	0.519493	Rfx3_Rfx1_Rfx4	ENSMUST00000171689.1|Nfatc2|ENSMUSG00000027544.10|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 	ENSMUST00000137451.1|Nfatc2|ENSMUSG00000027544.10|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2
mm10_v2_chr19_-_10304867_10304954	0.519003	Rfx3_Rfx1_Rfx4	ENSMUST00000039327.4|Dagla|ENSMUSG00000035735.4|diacylglycerol lipase, alpha
mm10_v2_chr17_-_34627365_34627525	0.514117	Rfx3_Rfx1_Rfx4	ENSMUST00000064953.8|Ppt2|ENSMUSG00000015474.10|palmitoyl-protein thioesterase 2 	ENSMUST00000170345.1|Ppt2|ENSMUSG00000015474.10|palmitoyl-protein thioesterase 2 	ENSMUST00000171121.2|Ppt2|ENSMUSG00000015474.10|palmitoyl-protein thioesterase 2 	ENSMUST00000168391.2|Ppt2|ENSMUSG00000015474.10|palmitoyl-protein thioesterase 2 	ENSMUST00000169067.2|Ppt2|ENSMUSG00000015474.10|palmitoyl-protein thioesterase 2
mm10_v2_chr17_-_34627148_34627191	0.511317	Rfx3_Rfx1_Rfx4	ENSMUST00000171376.1|Ppt2|ENSMUSG00000015474.10|palmitoyl-protein thioesterase 2 	ENSMUST00000169287.1|Ppt2|ENSMUSG00000015474.10|palmitoyl-protein thioesterase 2
mm10_v2_chr11_+_70562898_70562922	0.50752	Rfx3_Rfx1_Rfx4	ENSMUST00000102559.4|Mink1|ENSMUSG00000020827.12|misshapen-like kinase 1 (zebrafish)
mm10_v2_chr2_+_32629467_32629514	0.501659	Rfx3_Rfx1_Rfx4	ENSMUST00000068271.4|Ak1|ENSMUSG00000026817.8|adenylate kinase 1
mm10_v2_chr17_-_80290476_80290476	0.50016	Rfx3_Rfx1_Rfx4	ENSMUST00000086555.3|Dhx57|ENSMUSG00000035051.8|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 	ENSMUST00000038166.7|Dhx57|ENSMUSG00000035051.8|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
mm10_v2_chr5_+_66259890_66259912	0.497086	Rfx3_Rfx1_Rfx4	ENSMUST00000065530.6|Nsun7|ENSMUSG00000029206.7|NOL1/NOP2/Sun domain family, member 7
mm10_v2_chr9_-_109059711_109059771	0.492055	Rfx3_Rfx1_Rfx4	ENSMUST00000061973.4|Trex1|ENSMUSG00000049734.8|three prime repair exonuclease 1
mm10_v2_chr16_-_93603803_93603815	0.49174	Rfx3_Rfx1_Rfx4	ENSMUST00000023669.5|Setd4|ENSMUSG00000022948.8|SET domain containing 4 	ENSMUST00000113951.2|Setd4|ENSMUSG00000022948.8|SET domain containing 4
mm10_v2_chr12_-_83439910_83439934	0.488304	Rfx3_Rfx1_Rfx4	ENSMUST00000177801.1|Dpf3|ENSMUSG00000021221.9|D4, zinc and double PHD fingers, family 3
mm10_v2_chr7_-_25250720_25250761	0.481667	Rfx3_Rfx1_Rfx4	ENSMUST00000116343.2|Erf|ENSMUSG00000040857.9|Ets2 repressor factor 	ENSMUST00000045847.8|Erf|ENSMUSG00000040857.9|Ets2 repressor factor
mm10_v2_chr10_+_42860543_42860627	0.481623	Rfx3_Rfx1_Rfx4	ENSMUST00000157071.1|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr7_+_118855735_118855798	0.481078	Rfx3_Rfx1_Rfx4	ENSMUST00000098087.2|Iqck|ENSMUSG00000073856.4|IQ motif containing K 	ENSMUST00000106547.1|Iqck|ENSMUSG00000073856.4|IQ motif containing K
mm10_v2_chr3_+_156562141_156562196	0.480906	Rfx3_Rfx1_Rfx4	ENSMUST00000175773.1|Negr1|ENSMUSG00000040037.7|neuronal growth regulator 1
mm10_v2_chr5_-_112228934_112228975	0.480292	Rfx3_Rfx1_Rfx4	ENSMUST00000181535.2|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding)
mm10_v2_chr7_+_19149722_19149844	0.476209	Rfx3_Rfx1_Rfx4	ENSMUST00000049294.2|Snrpd2|ENSMUSG00000040824.2|small nuclear ribonucleoprotein D2
mm10_v2_chr2_+_121289589_121289606	0.471837	Rfx3_Rfx1_Rfx4	ENSMUST00000094639.3|Map1a|ENSMUSG00000027254.7|microtubule-associated protein 1 A
mm10_v2_chr11_+_70030023_70030083	0.470283	Rfx3_Rfx1_Rfx4	ENSMUST00000143920.2|Dlg4|ENSMUSG00000020886.10|discs, large homolog 4 (Drosophila)
mm10_v2_chr17_-_34024639_34024680	0.468108	Rfx3_Rfx1_Rfx4	ENSMUST00000025183.8|Ring1|ENSMUSG00000024325.8|ring finger protein 1
mm10_v2_chr7_+_25681158_25681158	0.464798	Rfx3_Rfx1_Rfx4	ENSMUST00000108403.3|B9d2|ENSMUSG00000063439.6|B9 protein domain 2
mm10_v2_chr11_-_45955465_45955494	0.464182	Rfx3_Rfx1_Rfx4	ENSMUST00000011398.6|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr2_+_36049453_36049507	0.462195	Rfx3_Rfx1_Rfx4	ENSMUST00000028256.4|Morn5|ENSMUSG00000026894.4|MORN repeat containing 5
mm10_v2_chr13_+_91461050_91461125	0.456962	Rfx3_Rfx1_Rfx4	ENSMUST00000004094.8|Ssbp2|ENSMUSG00000003992.8|single-stranded DNA binding protein 2 	ENSMUST00000042122.8|Ssbp2|ENSMUSG00000003992.8|single-stranded DNA binding protein 2
mm10_v2_chr17_-_25837082_25837295	0.454907	Rfx3_Rfx1_Rfx4	ENSMUST00000183929.1|Rhbdl1|ENSMUSG00000025735.7|rhomboid, veinlet-like 1 (Drosophila) 	ENSMUST00000184865.1|Rhbdl1|ENSMUSG00000025735.7|rhomboid, veinlet-like 1 (Drosophila) 	ENSMUST00000026831.7|Rhbdl1|ENSMUSG00000025735.7|rhomboid, veinlet-like 1 (Drosophila)
mm10_v2_chr7_+_133776857_133776942	0.45442	Rfx3_Rfx1_Rfx4	ENSMUST00000065359.5|Fank1|ENSMUSG00000053111.6|fibronectin type 3 and ankyrin repeat domains 1 	ENSMUST00000151031.1|Fank1|ENSMUSG00000053111.6|fibronectin type 3 and ankyrin repeat domains 1 	ENSMUST00000121560.1|Fank1|ENSMUSG00000053111.6|fibronectin type 3 and ankyrin repeat domains 1
mm10_v2_chr10_-_103236280_103236327	0.454419	Rfx3_Rfx1_Rfx4	ENSMUST00000123364.1|Lrriq1|ENSMUSG00000019892.6|leucine-rich repeats and IQ motif containing 1 	ENSMUST00000166240.1|Lrriq1|ENSMUSG00000019892.6|leucine-rich repeats and IQ motif containing 1 	ENSMUST00000020043.5|Lrriq1|ENSMUSG00000019892.6|leucine-rich repeats and IQ motif containing 1
mm10_v2_chr19_-_3282958_3283048	0.453344	Rfx3_Rfx1_Rfx4	ENSMUST00000119292.1|Ighmbp2|ENSMUSG00000024831.7|immunoglobulin mu binding protein 2 	ENSMUST00000025751.3|Ighmbp2|ENSMUSG00000024831.7|immunoglobulin mu binding protein 2
mm10_v2_chr9_-_50617428_50617467	0.452877	Rfx3_Rfx1_Rfx4	ENSMUST00000131351.1|AU019823|ENSMUSG00000059820.8|expressed sequence AU019823 	ENSMUST00000171462.1|AU019823|ENSMUSG00000059820.8|expressed sequence AU019823
mm10_v2_chr7_+_79743142_79743169	0.452059	Rfx3_Rfx1_Rfx4	ENSMUST00000035622.7|Wdr93|ENSMUSG00000039099.7|WD repeat domain 93
mm10_v2_chr19_-_4283033_4283142	0.44805	Rfx3_Rfx1_Rfx4	ENSMUST00000167215.1|Ankrd13d|ENSMUSG00000005986.9|ankyrin repeat domain 13 family, member D 	ENSMUST00000056888.6|Ankrd13d|ENSMUSG00000005986.9|ankyrin repeat domain 13 family, member D
mm10_v2_chr17_-_78937031_78937074	0.441034	Rfx3_Rfx1_Rfx4	ENSMUST00000024885.8|Cebpz|ENSMUSG00000024081.8|CCAAT/enhancer binding protein zeta
mm10_v2_chr4_+_118621160_118621239	0.441011	Rfx3_Rfx1_Rfx4	ENSMUST00000147373.1|Ebna1bp2|ENSMUSG00000028729.9|EBNA1 binding protein 2
mm10_v2_chr16_-_38341812_38341859	0.440957	Rfx3_Rfx1_Rfx4	ENSMUST00000114740.2|Maats1|ENSMUSG00000022805.10|MYCBP-associated, testis expressed 1 	ENSMUST00000023501.8|Maats1|ENSMUSG00000022805.10|MYCBP-associated, testis expressed 1
mm10_v2_chr3_-_89245159_89245199	0.437224	Rfx3_Rfx1_Rfx4	ENSMUST00000090924.6|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr8_+_45627946_45627975	0.435679	Rfx3_Rfx1_Rfx4	ENSMUST00000145458.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr12_-_84408991_84409034	0.434839	Rfx3_Rfx1_Rfx4	ENSMUST00000120942.1|Entpd5|ENSMUSG00000021236.10|ectonucleoside triphosphate diphosphohydrolase 5 	ENSMUST00000110272.2|Entpd5|ENSMUSG00000021236.10|ectonucleoside triphosphate diphosphohydrolase 5
mm10_v2_chr8_+_85060055_85060135	0.434774	Rfx3_Rfx1_Rfx4	ENSMUST00000095220.3|Fbxw9|ENSMUSG00000008167.8|F-box and WD-40 domain protein 9
mm10_v2_chr5_+_135725713_135725740	0.430467	Rfx3_Rfx1_Rfx4	ENSMUST00000127096.1|Por|ENSMUSG00000005514.8|P450 (cytochrome) oxidoreductase
mm10_v2_chr10_-_116950366_116950432	0.430341	Rfx3_Rfx1_Rfx4	ENSMUST00000020375.6|Rab3ip|ENSMUSG00000064181.5|RAB3A interacting protein
mm10_v2_chr5_+_30814722_30814776	0.430286	Rfx3_Rfx1_Rfx4	ENSMUST00000114724.1|Mapre3|ENSMUSG00000029166.8|microtubule-associated protein, RP/EB family, member 3
mm10_v2_chr8_+_124863032_124863089	0.425141	Rfx3_Rfx1_Rfx4	ENSMUST00000034466.3|Gnpat|ENSMUSG00000031985.3|glyceronephosphate O-acyltransferase 	ENSMUST00000161986.1|Gnpat|ENSMUSG00000031985.3|glyceronephosphate O-acyltransferase
mm10_v2_chr5_+_30814571_30814641	0.42443	Rfx3_Rfx1_Rfx4	ENSMUST00000031058.8|Mapre3|ENSMUSG00000029166.8|microtubule-associated protein, RP/EB family, member 3
mm10_v2_chr10_+_75037291_75037332	0.422038	Rfx3_Rfx1_Rfx4	ENSMUST00000139384.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr1_+_183388981_183388981	0.421117	Rfx3_Rfx1_Rfx4	ENSMUST00000097043.5|Taf1a|ENSMUSG00000072258.5|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, A
mm10_v2_chr18_-_31949571_31949636	0.41846	Rfx3_Rfx1_Rfx4	ENSMUST00000064016.5|Gpr17|ENSMUSG00000052229.5|G protein-coupled receptor 17
mm10_v2_chr16_+_35770382_35770396	0.418096	Rfx3_Rfx1_Rfx4	ENSMUST00000023555.4|Hspbap1|ENSMUSG00000022849.4|Hspb associated protein 1
mm10_v2_chr15_+_80948484_80948549	0.416584	Rfx3_Rfx1_Rfx4	ENSMUST00000023043.2|Adsl|ENSMUSG00000022407.2|adenylosuccinate lyase 	ENSMUST00000168756.1|Adsl|ENSMUSG00000022407.2|adenylosuccinate lyase 	ENSMUST00000164806.1|Adsl|ENSMUSG00000022407.2|adenylosuccinate lyase
mm10_v2_chr15_-_98953541_98953560	0.415322	Rfx3_Rfx1_Rfx4	ENSMUST00000097014.5|Tuba1a|ENSMUSG00000072235.5|tubulin, alpha 1A
mm10_v2_chr10_+_106470281_106470367	0.414796	Rfx3_Rfx1_Rfx4	ENSMUST00000029404.9|Ppfia2|ENSMUSG00000053825.8|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENSMUST00000169303.1|Ppfia2|ENSMUSG00000053825.8|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm10_v2_chr11_+_108587077_108587110	0.414136	Rfx3_Rfx1_Rfx4	ENSMUST00000146912.2|Cep112|ENSMUSG00000020728.11|centrosomal protein 112
mm10_v2_chr2_+_3336159_3336174	0.412523	Rfx3_Rfx1_Rfx4	ENSMUST00000115089.1|Acbd7|ENSMUSG00000026644.6|acyl-Coenzyme A binding domain containing 7
mm10_v2_chr11_+_52004220_52004311	0.410681	Rfx3_Rfx1_Rfx4	ENSMUST00000121591.1|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000063303.4|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000109081.2|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000109080.2|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000109079.2|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000109077.2|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000109078.1|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000063321.6|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000135076.1|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000120374.1|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3
mm10_v2_chr6_-_77979515_77979622	0.397244	Rfx3_Rfx1_Rfx4	ENSMUST00000159626.1|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2 	ENSMUST00000075340.5|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2 	ENSMUST00000162273.1|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2
mm10_v2_chr10_-_42018363_42018436	0.392737	Rfx3_Rfx1_Rfx4	ENSMUST00000162405.1|Armc2|ENSMUSG00000071324.5|armadillo repeat containing 2 	ENSMUST00000095729.4|Armc2|ENSMUSG00000071324.5|armadillo repeat containing 2 	ENSMUST00000161081.1|Armc2|ENSMUSG00000071324.5|armadillo repeat containing 2 	ENSMUST00000160262.2|Armc2|ENSMUSG00000071324.5|armadillo repeat containing 2
mm10_v2_chr11_-_101425330_101425388	0.391846	Rfx3_Rfx1_Rfx4	ENSMUST00000103102.3|Ptges3l|ENSMUSG00000097487.1|prostaglandin E synthase 3 (cytosolic)-like
mm10_v2_chr15_-_68258787_68258880	0.391837	Rfx3_Rfx1_Rfx4	ENSMUST00000162173.1|Zfat|ENSMUSG00000022335.10|zinc finger and AT hook domain containing 	ENSMUST00000160248.1|Zfat|ENSMUSG00000022335.10|zinc finger and AT hook domain containing 	ENSMUST00000159430.1|Zfat|ENSMUSG00000022335.10|zinc finger and AT hook domain containing 	ENSMUST00000162054.1|Zfat|ENSMUSG00000022335.10|zinc finger and AT hook domain containing
mm10_v2_chr6_-_100671126_100671178	0.390607	Rfx3_Rfx1_Rfx4	ENSMUST00000089245.6|Shq1|ENSMUSG00000035378.11|SHQ1 homolog (S. cerevisiae) 	ENSMUST00000113312.2|Shq1|ENSMUSG00000035378.11|SHQ1 homolog (S. cerevisiae) 	ENSMUST00000170667.1|Shq1|ENSMUSG00000035378.11|SHQ1 homolog (S. cerevisiae)
mm10_v2_chr9_-_124424154_124424154	0.389735	Rfx3_Rfx1_Rfx4	ENSMUST00000180270.1|Ppp2r3d|ENSMUSG00000093803.1|protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
mm10_v2_chr2_-_79428891_79428990	0.389441	Rfx3_Rfx1_Rfx4	ENSMUST00000143974.1|Cerkl|ENSMUSG00000075256.3|ceramide kinase-like
mm10_v2_chr17_-_57011271_57011326	0.389158	Rfx3_Rfx1_Rfx4	ENSMUST00000002733.6|Gtf2f1|ENSMUSG00000002658.9|general transcription factor IIF, polypeptide 1
mm10_v2_chr2_+_110017806_110017873	0.387885	Rfx3_Rfx1_Rfx4	ENSMUST00000028580.5|Ccdc34|ENSMUSG00000027160.10|coiled-coil domain containing 34
mm10_v2_chr1_+_161142661_161142701	0.387685	Rfx3_Rfx1_Rfx4	ENSMUST00000125018.1|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45
mm10_v2_chr1_+_161142706_161142767	0.3865	Rfx3_Rfx1_Rfx4	ENSMUST00000111608.1|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45 	ENSMUST00000052245.8|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45
mm10_v2_chr8_-_124863008_124863029	0.385248	Rfx3_Rfx1_Rfx4	ENSMUST00000034465.7|2810004N23Rik|ENSMUSG00000031984.7|RIKEN cDNA 2810004N23 gene
mm10_v2_chr9_-_24503127_24503197	0.384704	Rfx3_Rfx1_Rfx4	ENSMUST00000142064.1|Dpy19l1|ENSMUSG00000043067.9|dpy-19-like 1 (C. elegans) 	ENSMUST00000170356.1|Dpy19l1|ENSMUSG00000043067.9|dpy-19-like 1 (C. elegans)
mm10_v2_chr4_-_95052170_95052181	0.384073	Rfx3_Rfx1_Rfx4	ENSMUST00000058555.2|Jun|ENSMUSG00000052684.3|Jun oncogene
mm10_v2_chr7_+_131966446_131966469	0.383002	Rfx3_Rfx1_Rfx4	ENSMUST00000045840.4|Gpr26|ENSMUSG00000040125.4|G protein-coupled receptor 26
mm10_v2_chr4_-_149426603_149426749	0.38293	Rfx3_Rfx1_Rfx4	ENSMUST00000103212.3|Ube4b|ENSMUSG00000028960.12|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
mm10_v2_chr12_+_84409039_84409102	0.382028	Rfx3_Rfx1_Rfx4	ENSMUST00000081828.6|Ccdc176|ENSMUSG00000057265.6|coiled-coil domain containing 176
mm10_v2_chr7_+_18991245_18991319	0.381457	Rfx3_Rfx1_Rfx4	ENSMUST00000130268.1|Mypop|ENSMUSG00000048481.9|Myb-related transcription factor, partner of profilin 	ENSMUST00000059331.8|Mypop|ENSMUSG00000048481.9|Myb-related transcription factor, partner of profilin 	ENSMUST00000131087.1|Mypop|ENSMUSG00000048481.9|Myb-related transcription factor, partner of profilin
mm10_v2_chr11_-_62731865_62731910	0.379446	Rfx3_Rfx1_Rfx4	ENSMUST00000150336.1|Zfp287|ENSMUSG00000005267.7|zinc finger protein 287
mm10_v2_chr9_-_70141484_70141578	0.378642	Rfx3_Rfx1_Rfx4	ENSMUST00000034749.8|Fam81a|ENSMUSG00000032224.8|family with sequence similarity 81, member A
mm10_v2_chr6_-_77979652_77979708	0.377987	Rfx3_Rfx1_Rfx4	ENSMUST00000161846.1|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2 	ENSMUST00000160894.1|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2
mm10_v2_chr6_+_83185946_83186151	0.376546	Rfx3_Rfx1_Rfx4	ENSMUST00000113907.1|Dctn1|ENSMUSG00000031865.9|dynactin 1
mm10_v2_chr11_+_70562840_70562897	0.375266	Rfx3_Rfx1_Rfx4	ENSMUST00000072237.6|Mink1|ENSMUSG00000020827.12|misshapen-like kinase 1 (zebrafish) 	ENSMUST00000072873.7|Mink1|ENSMUSG00000020827.12|misshapen-like kinase 1 (zebrafish)
mm10_v2_chr2_+_72297895_72297912	0.375054	Rfx3_Rfx1_Rfx4	ENSMUST00000144111.1|Zak|ENSMUSG00000004085.8|sterile alpha motif and leucine zipper containing kinase AZK
mm10_v2_chr18_-_70530138_70530284	0.374623	Rfx3_Rfx1_Rfx4	ENSMUST00000161542.1|Poli|ENSMUSG00000038425.11|polymerase (DNA directed), iota 	ENSMUST00000159389.1|Poli|ENSMUSG00000038425.11|polymerase (DNA directed), iota
mm10_v2_chr9_-_109059216_109059259	0.373999	Rfx3_Rfx1_Rfx4	ENSMUST00000112053.1|Trex1|ENSMUSG00000049734.8|three prime repair exonuclease 1
mm10_v2_chr1_-_152766281_152766319	0.372642	Rfx3_Rfx1_Rfx4	ENSMUST00000111859.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1 	ENSMUST00000148865.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr11_-_87359011_87359081	0.371716	Rfx3_Rfx1_Rfx4	ENSMUST00000055438.4|Ppm1e|ENSMUSG00000046442.4|protein phosphatase 1E (PP2C domain containing)
mm10_v2_chr4_+_109343029_109343081	0.371567	Rfx3_Rfx1_Rfx4	ENSMUST00000030281.5|Eps15|ENSMUSG00000028552.7|epidermal growth factor receptor pathway substrate 15
mm10_v2_chr18_+_53245618_53245662	0.371514	Rfx3_Rfx1_Rfx4	ENSMUST00000165032.1|Snx24|ENSMUSG00000024535.9|sorting nexing 24
mm10_v2_chr6_+_34029421_34029456	0.369479	Rfx3_Rfx1_Rfx4	ENSMUST00000070189.3|Lrguk|ENSMUSG00000056215.6|leucine-rich repeats and guanylate kinase domain containing 	ENSMUST00000101564.2|Lrguk|ENSMUSG00000056215.6|leucine-rich repeats and guanylate kinase domain containing
mm10_v2_chr5_-_92042630_92042701	0.367903	Rfx3_Rfx1_Rfx4	ENSMUST00000113140.1|Cdkl2|ENSMUSG00000029403.8|cyclin-dependent kinase-like 2 (CDC2-related kinase) 	ENSMUST00000113143.1|Cdkl2|ENSMUSG00000029403.8|cyclin-dependent kinase-like 2 (CDC2-related kinase)
mm10_v2_chr1_+_191977368_191977389	0.366361	Rfx3_Rfx1_Rfx4	ENSMUST00000181512.1|Rd3|ENSMUSG00000049353.11|retinal degeneration 3 	ENSMUST00000053463.7|Rd3|ENSMUSG00000049353.11|retinal degeneration 3 	ENSMUST00000180463.1|Rd3|ENSMUSG00000049353.11|retinal degeneration 3
mm10_v2_chr6_+_119175247_119175292	0.365901	Rfx3_Rfx1_Rfx4	ENSMUST00000112777.2|Dcp1b|ENSMUSG00000041477.8|DCP1 decapping enzyme homolog B (S. cerevisiae) 	ENSMUST00000073909.5|Dcp1b|ENSMUSG00000041477.8|DCP1 decapping enzyme homolog B (S. cerevisiae)
mm10_v2_chr5_-_21424664_21424686	0.364539	Rfx3_Rfx1_Rfx4	ENSMUST00000115245.1|Ccdc146|ENSMUSG00000064280.7|coiled-coil domain containing 146 	ENSMUST00000030552.5|Ccdc146|ENSMUSG00000064280.7|coiled-coil domain containing 146
mm10_v2_chr9_-_50739365_50739517	0.363916	Rfx3_Rfx1_Rfx4	ENSMUST00000117093.1|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1 	ENSMUST00000121634.1|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1
mm10_v2_chr2_+_112239468_112239508	0.362556	Rfx3_Rfx1_Rfx4	ENSMUST00000028554.3|Lpcat4|ENSMUSG00000027134.4|lysophosphatidylcholine acyltransferase 4
mm10_v2_chr11_-_97629685_97629716	0.361461	Rfx3_Rfx1_Rfx4	ENSMUST00000052281.4|E130012A19Rik|ENSMUSG00000043439.4|RIKEN cDNA E130012A19 gene
mm10_v2_chr8_-_106337987_106337996	0.360691	Rfx3_Rfx1_Rfx4	ENSMUST00000067512.7|Smpd3|ENSMUSG00000031906.8|sphingomyelin phosphodiesterase 3, neutral
mm10_v2_chr11_-_83302586_83302637	0.359148	Rfx3_Rfx1_Rfx4	ENSMUST00000176374.1|Pex12|ENSMUSG00000018733.4|peroxisomal biogenesis factor 12
mm10_v2_chr7_+_100495987_100496079	0.358959	Rfx3_Rfx1_Rfx4	ENSMUST00000133044.1|Ucp2|ENSMUSG00000033685.6|uncoupling protein 2 (mitochondrial, proton carrier)
mm10_v2_chr1_+_185454803_185454848	0.358483	Rfx3_Rfx1_Rfx4	ENSMUST00000061093.6|Slc30a10|ENSMUSG00000026614.6|solute carrier family 30, member 10
mm10_v2_chr2_-_30048827_30048891	0.35425	Rfx3_Rfx1_Rfx4	ENSMUST00000113711.2|Wdr34|ENSMUSG00000039715.8|WD repeat domain 34
mm10_v2_chr9_+_107547288_107547379	0.353954	Rfx3_Rfx1_Rfx4	ENSMUST00000010188.7|Zmynd10|ENSMUSG00000010044.7|zinc finger, MYND domain containing 10
mm10_v2_chr14_+_54254124_54254247	0.352057	Rfx3_Rfx1_Rfx4	ENSMUST00000180359.1|Abhd4|ENSMUSG00000040997.7|abhydrolase domain containing 4
mm10_v2_chr10_-_75764265_75764359	0.348248	Rfx3_Rfx1_Rfx4	ENSMUST00000001712.6|Cabin1|ENSMUSG00000020196.9|calcineurin binding protein 1
mm10_v2_chr14_-_55635602_55635718	0.344654	Rfx3_Rfx1_Rfx4	ENSMUST00000047131.9|Ipo4|ENSMUSG00000002319.9|importin 4
mm10_v2_chr7_+_3390629_3390707	0.343576	Rfx3_Rfx1_Rfx4	ENSMUST00000182222.1|Cacng8|ENSMUSG00000053395.9|calcium channel, voltage-dependent, gamma subunit 8
mm10_v2_chr8_-_84104773_84104793	0.339189	Rfx3_Rfx1_Rfx4	ENSMUST00000041367.7|Dcaf15|ENSMUSG00000037103.7|DDB1 and CUL4 associated factor 15
mm10_v2_chr2_+_29788237_29788302	0.338081	Rfx3_Rfx1_Rfx4	ENSMUST00000028137.3|Coq4|ENSMUSG00000026798.4|coenzyme Q4 homolog (yeast) 	ENSMUST00000148791.1|Coq4|ENSMUSG00000026798.4|coenzyme Q4 homolog (yeast)
mm10_v2_chr3_+_103968588_103968661	0.337277	Rfx3_Rfx1_Rfx4	ENSMUST00000156262.1|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1
mm10_v2_chr13_-_92483996_92484037	0.336547	Rfx3_Rfx1_Rfx4	ENSMUST00000040106.7|Fam151b|ENSMUSG00000034334.7|family with sequence similarity 151, member B
mm10_v2_chr11_+_58171648_58171688	0.33593	Rfx3_Rfx1_Rfx4	ENSMUST00000020820.1|Mrpl22|ENSMUSG00000020514.2|mitochondrial ribosomal protein L22
mm10_v2_chr1_-_152766323_152766352	0.335039	Rfx3_Rfx1_Rfx4	ENSMUST00000111857.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr11_+_51584757_51584821	0.334633	Rfx3_Rfx1_Rfx4	ENSMUST00000167797.1|Phykpl|ENSMUSG00000020359.7|5-phosphohydroxy-L-lysine phospholyase 	ENSMUST00000020625.6|Phykpl|ENSMUSG00000020359.7|5-phosphohydroxy-L-lysine phospholyase
mm10_v2_chr7_-_17027853_17027921	0.33459	Rfx3_Rfx1_Rfx4	ENSMUST00000003183.5|Ppp5c|ENSMUSG00000003099.5|protein phosphatase 5, catalytic subunit
mm10_v2_chr1_-_133753681_133753857	0.334168	Rfx3_Rfx1_Rfx4	ENSMUST00000125659.1|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4 	ENSMUST00000165602.2|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4 	ENSMUST00000048953.7|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4
mm10_v2_chr18_-_70530313_70530434	0.333592	Rfx3_Rfx1_Rfx4	ENSMUST00000043286.8|Poli|ENSMUSG00000038425.11|polymerase (DNA directed), iota
mm10_v2_chr10_-_89732253_89732324	0.329915	Rfx3_Rfx1_Rfx4	ENSMUST00000020109.3|Actr6|ENSMUSG00000019948.3|ARP6 actin-related protein 6
mm10_v2_chr2_+_164745979_164746025	0.328526	Rfx3_Rfx1_Rfx4	ENSMUST00000017443.7|Dnttip1|ENSMUSG00000017299.7|deoxynucleotidyltransferase, terminal, interacting protein 1 	ENSMUST00000109326.3|Dnttip1|ENSMUSG00000017299.7|deoxynucleotidyltransferase, terminal, interacting protein 1
mm10_v2_chr18_+_48045329_48045348	0.326489	Rfx3_Rfx1_Rfx4	ENSMUST00000076155.4|Gm5506|ENSMUSG00000059040.4|predicted gene 5506
mm10_v2_chr16_-_91069142_91069159	0.32496	Rfx3_Rfx1_Rfx4	ENSMUST00000035689.1|4932438H23Rik|ENSMUSG00000039851.5|RIKEN cDNA 4932438H23 gene 	ENSMUST00000114076.1|4932438H23Rik|ENSMUSG00000039851.5|RIKEN cDNA 4932438H23 gene
mm10_v2_chr7_+_4740137_4740175	0.324655	Rfx3_Rfx1_Rfx4	ENSMUST00000130215.1|Suv420h2|ENSMUSG00000059851.9|suppressor of variegation 4-20 homolog 2 (Drosophila) 	ENSMUST00000108582.3|Suv420h2|ENSMUSG00000059851.9|suppressor of variegation 4-20 homolog 2 (Drosophila)
mm10_v2_chr12_-_69198419_69198429	0.323941	Rfx3_Rfx1_Rfx4	ENSMUST00000021356.5|Dnaaf2|ENSMUSG00000020973.7|dynein, axonemal assembly factor 2
mm10_v2_chr12_+_5411641_5411641	0.322109	Rfx3_Rfx1_Rfx4	ENSMUST00000163627.1|2810032G03Rik|ENSMUSG00000037735.6|RIKEN cDNA 2810032G03 gene
mm10_v2_chr11_-_67965631_67965663	0.322076	Rfx3_Rfx1_Rfx4	ENSMUST00000021287.5|Wdr16|ENSMUSG00000020904.5|WD repeat domain 16 	ENSMUST00000126766.1|Wdr16|ENSMUSG00000020904.5|WD repeat domain 16
mm10_v2_chr16_-_3909192_3909192	0.321648	Rfx3_Rfx1_Rfx4	ENSMUST00000181699.1|1700016D08Rik|ENSMUSG00000097179.1|RIKEN cDNA 1700016D08 gene
mm10_v2_chr11_-_72361837_72361899	0.319655	Rfx3_Rfx1_Rfx4	ENSMUST00000108503.2|Tekt1|ENSMUSG00000020799.10|tektin 1
mm10_v2_chr7_+_28179469_28179535	0.316734	Rfx3_Rfx1_Rfx4	ENSMUST00000085901.6|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b 	ENSMUST00000172761.1|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm10_v2_chr17_+_28177339_28177449	0.315837	Rfx3_Rfx1_Rfx4	ENSMUST00000073534.2|Zfp523|ENSMUSG00000024220.7|zinc finger protein 523 	ENSMUST00000002318.1|Zfp523|ENSMUSG00000024220.7|zinc finger protein 523
mm10_v2_chr4_-_41723129_41723179	0.314037	Rfx3_Rfx1_Rfx4	ENSMUST00000171641.1|Dctn3|ENSMUSG00000028447.5|dynactin 3 	ENSMUST00000030158.4|Dctn3|ENSMUSG00000028447.5|dynactin 3
mm10_v2_chr12_+_85219475_85219546	0.309112	Rfx3_Rfx1_Rfx4	ENSMUST00000004910.5|Eif2b2|ENSMUSG00000004788.5|eukaryotic translation initiation factor 2B, subunit 2 beta 	ENSMUST00000140900.1|Eif2b2|ENSMUSG00000004788.5|eukaryotic translation initiation factor 2B, subunit 2 beta 	ENSMUST00000136495.1|Eif2b2|ENSMUSG00000004788.5|eukaryotic translation initiation factor 2B, subunit 2 beta
mm10_v2_chr4_+_107830958_107830985	0.308205	Rfx3_Rfx1_Rfx4	ENSMUST00000106731.2|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
mm10_v2_chr8_+_120488416_120488490	0.307914	Rfx3_Rfx1_Rfx4	ENSMUST00000034279.9|Gse1|ENSMUSG00000031822.12|genetic suppressor element 1
mm10_v2_chr15_+_75704280_75704394	0.306698	Rfx3_Rfx1_Rfx4	ENSMUST00000121137.1|Rhpn1|ENSMUSG00000022580.6|rhophilin, Rho GTPase binding protein 1 	ENSMUST00000023244.5|Rhpn1|ENSMUSG00000022580.6|rhophilin, Rho GTPase binding protein 1
mm10_v2_chr8_-_95306585_95306585	0.301989	Rfx3_Rfx1_Rfx4	ENSMUST00000119870.2|Cngb1|ENSMUSG00000031789.10|cyclic nucleotide gated channel beta 1 	ENSMUST00000093268.4|Cngb1|ENSMUSG00000031789.10|cyclic nucleotide gated channel beta 1
mm10_v2_chr11_-_119300070_119300089	0.301392	Rfx3_Rfx1_Rfx4	ENSMUST00000026667.8|Eif4a3|ENSMUSG00000025580.9|eukaryotic translation initiation factor 4A3
mm10_v2_chr17_-_6655939_6655939	0.299252	Rfx3_Rfx1_Rfx4	ENSMUST00000179554.1|Dynlt1f|ENSMUSG00000095677.1|dynein light chain Tctex-type 1F
mm10_v2_chr15_+_102331700_102331777	0.296008	Rfx3_Rfx1_Rfx4	ENSMUST00000113682.2|Myg1|ENSMUSG00000001285.6|melanocyte proliferating gene 1 	ENSMUST00000001331.6|Myg1|ENSMUSG00000001285.6|melanocyte proliferating gene 1 	ENSMUST00000171244.1|Myg1|ENSMUSG00000001285.6|melanocyte proliferating gene 1
mm10_v2_chr17_-_6961156_6961156	0.295624	Rfx3_Rfx1_Rfx4	ENSMUST00000063683.6|Tagap1|ENSMUSG00000052031.7|T cell activation GTPase activating protein 1
mm10_v2_chr4_-_141790891_141790931	0.295243	Rfx3_Rfx1_Rfx4	ENSMUST00000038014.4|Dnajc16|ENSMUSG00000040697.4|DnaJ (Hsp40) homolog, subfamily C, member 16 	ENSMUST00000153880.1|Dnajc16|ENSMUSG00000040697.4|DnaJ (Hsp40) homolog, subfamily C, member 16
mm10_v2_chr1_+_139454747_139454825	0.293415	Rfx3_Rfx1_Rfx4	ENSMUST00000053364.8|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila) 	ENSMUST00000097554.3|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila)
mm10_v2_chr13_-_97137877_97137926	0.29288	Rfx3_Rfx1_Rfx4	ENSMUST00000073456.7|Nsa2|ENSMUSG00000060739.7|NSA2 ribosome biogenesis homolog (S. cerevisiae)
mm10_v2_chr10_-_128645784_128645826	0.292725	Rfx3_Rfx1_Rfx4	ENSMUST00000065334.3|Ikzf4|ENSMUSG00000002578.9|IKAROS family zinc finger 4
mm10_v2_chr3_-_89245005_89245031	0.29113	Rfx3_Rfx1_Rfx4	ENSMUST00000107464.1|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr9_-_42472198_42472265	0.290475	Rfx3_Rfx1_Rfx4	ENSMUST00000128959.1|Tbcel|ENSMUSG00000037287.8|tubulin folding cofactor E-like 	ENSMUST00000066148.5|Tbcel|ENSMUSG00000037287.8|tubulin folding cofactor E-like 	ENSMUST00000138506.1|Tbcel|ENSMUSG00000037287.8|tubulin folding cofactor E-like
mm10_v2_chr6_-_83125029_83125135	0.288584	Rfx3_Rfx1_Rfx4	ENSMUST00000032109.4|Ino80b|ENSMUSG00000030034.5|INO80 complex subunit B
mm10_v2_chr4_+_137681663_137681719	0.287672	Rfx3_Rfx1_Rfx4	ENSMUST00000047243.5|Rap1gap|ENSMUSG00000041351.10|Rap1 GTPase-activating protein
mm10_v2_chr6_-_119330668_119330694	0.287444	Rfx3_Rfx1_Rfx4	ENSMUST00000112756.1|Lrtm2|ENSMUSG00000055003.8|leucine-rich repeats and transmembrane domains 2
mm10_v2_chr7_+_28180272_28180316	0.286777	Rfx3_Rfx1_Rfx4	ENSMUST00000173223.1|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm10_v2_chr5_-_137530990_137531049	0.286437	Rfx3_Rfx1_Rfx4	ENSMUST00000132525.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr16_+_3908801_3909031	0.285889	Rfx3_Rfx1_Rfx4	ENSMUST00000145150.2|Cluap1|ENSMUSG00000014232.8|clusterin associated protein 1 	ENSMUST00000040881.7|Cluap1|ENSMUSG00000014232.8|clusterin associated protein 1
mm10_v2_chr7_-_126976092_126976105	0.284501	Rfx3_Rfx1_Rfx4	ENSMUST00000181859.1|D830044I16Rik|ENSMUSG00000097075.1|RIKEN cDNA D830044I16 gene
mm10_v2_chr3_+_105959369_105959427	0.283994	Rfx3_Rfx1_Rfx4	ENSMUST00000010278.5|Wdr77|ENSMUSG00000000561.8|WD repeat domain 77
mm10_v2_chr3_-_89214378_89214430	0.282968	Rfx3_Rfx1_Rfx4	ENSMUST00000073572.4|Mtx1|ENSMUSG00000064068.7|metaxin 1
mm10_v2_chr4_-_155669171_155669231	0.281488	Rfx3_Rfx1_Rfx4	ENSMUST00000103176.3|Mib2|ENSMUSG00000029060.11|mindbomb homolog 2 (Drosophila)
mm10_v2_chr7_+_3303503_3303565	0.279206	Rfx3_Rfx1_Rfx4	ENSMUST00000100301.4|Prkcg|ENSMUSG00000078816.3|protein kinase C, gamma
mm10_v2_chr3_+_13946368_13946379	0.277666	Rfx3_Rfx1_Rfx4	ENSMUST00000171075.1|Ralyl|ENSMUSG00000039717.9|RALY RNA binding protein-like 	ENSMUST00000108372.2|Ralyl|ENSMUSG00000039717.9|RALY RNA binding protein-like
mm10_v2_chr17_-_34836869_34836959	0.275722	Rfx3_Rfx1_Rfx4	ENSMUST00000077477.5|Stk19|ENSMUSG00000061207.5|serine/threonine kinase 19
mm10_v2_chr11_+_70562980_70563070	0.275695	Rfx3_Rfx1_Rfx4	ENSMUST00000079244.5|Mink1|ENSMUSG00000020827.12|misshapen-like kinase 1 (zebrafish) 	ENSMUST00000102558.4|Mink1|ENSMUSG00000020827.12|misshapen-like kinase 1 (zebrafish)
mm10_v2_chr6_-_119330723_119330800	0.275319	Rfx3_Rfx1_Rfx4	ENSMUST00000068351.7|Lrtm2|ENSMUSG00000055003.8|leucine-rich repeats and transmembrane domains 2
mm10_v2_chr2_+_69647208_69647272	0.272839	Rfx3_Rfx1_Rfx4	ENSMUST00000074963.2|Bbs5|ENSMUSG00000063145.4|Bardet-Biedl syndrome 5 (human) 	ENSMUST00000112286.2|Bbs5|ENSMUSG00000063145.4|Bardet-Biedl syndrome 5 (human)
mm10_v2_chr19_-_45560508_45560532	0.272726	Rfx3_Rfx1_Rfx4	ENSMUST00000026239.6|Poll|ENSMUSG00000025218.6|polymerase (DNA directed), lambda
mm10_v2_chr16_+_20696175_20696211	0.270045	Rfx3_Rfx1_Rfx4	ENSMUST00000128273.1|Fam131a|ENSMUSG00000050821.7|family with sequence similarity 131, member A
mm10_v2_chr19_+_45560569_45560644	0.269585	Rfx3_Rfx1_Rfx4	ENSMUST00000047057.7|Dpcd|ENSMUSG00000041035.7|deleted in primary ciliary dyskinesia
mm10_v2_chr7_-_98145472_98145502	0.269257	Rfx3_Rfx1_Rfx4	ENSMUST00000098281.2|Omp|ENSMUSG00000074006.2|olfactory marker protein
mm10_v2_chr11_-_119300004_119300034	0.269128	Rfx3_Rfx1_Rfx4	ENSMUST00000106253.1|Eif4a3|ENSMUSG00000025580.9|eukaryotic translation initiation factor 4A3
mm10_v2_chr5_+_66260121_66260312	0.269	Rfx3_Rfx1_Rfx4	ENSMUST00000031109.3|Nsun7|ENSMUSG00000029206.7|NOL1/NOP2/Sun domain family, member 7 	ENSMUST00000113720.1|Nsun7|ENSMUSG00000029206.7|NOL1/NOP2/Sun domain family, member 7
mm10_v2_chr2_-_121271315_121271322	0.264576	Rfx3_Rfx1_Rfx4	ENSMUST00000131245.1|Trp53bp1|ENSMUSG00000043909.10|transformation related protein 53 binding protein 1
mm10_v2_chr19_-_35924488_35924578	0.26448	Rfx3_Rfx1_Rfx4	ENSMUST00000178904.1|A830019P07Rik|ENSMUSG00000094707.1|RIKEN cDNA A830019P07 gene
mm10_v2_chr4_+_130663321_130663412	0.263897	Rfx3_Rfx1_Rfx4	ENSMUST00000030315.6|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila) 	ENSMUST00000105992.2|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila) 	ENSMUST00000105991.2|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila) 	ENSMUST00000143277.1|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila) 	ENSMUST00000097864.2|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila) 	ENSMUST00000097862.2|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila)
mm10_v2_chr18_+_53245736_53245786	0.263203	Rfx3_Rfx1_Rfx4	ENSMUST00000025417.8|Snx24|ENSMUSG00000024535.9|sorting nexing 24
mm10_v2_chr11_-_5878207_5878292	0.262851	Rfx3_Rfx1_Rfx4	ENSMUST00000102922.3|Pold2|ENSMUSG00000020471.5|polymerase (DNA directed), delta 2, regulatory subunit
mm10_v2_chr11_+_4160348_4160404	0.262575	Rfx3_Rfx1_Rfx4	ENSMUST00000002198.3|Sf3a1|ENSMUSG00000002129.5|splicing factor 3a, subunit 1
mm10_v2_chr11_+_88047302_88047373	0.260378	Rfx3_Rfx1_Rfx4	ENSMUST00000139129.2|Srsf1|ENSMUSG00000018379.11|serine/arginine-rich splicing factor 1
mm10_v2_chr11_-_100620165_100620209	0.260292	Rfx3_Rfx1_Rfx4	ENSMUST00000014339.8|Dnajc7|ENSMUSG00000014195.9|DnaJ (Hsp40) homolog, subfamily C, member 7
mm10_v2_chr9_-_51102062_51102085	0.258453	Rfx3_Rfx1_Rfx4	ENSMUST00000170947.1|4833427G06Rik|ENSMUSG00000032057.8|RIKEN cDNA 4833427G06 gene
mm10_v2_chr8_-_119575143_119575205	0.257544	Rfx3_Rfx1_Rfx4	ENSMUST00000036049.4|Hsdl1|ENSMUSG00000034189.4|hydroxysteroid dehydrogenase like 1
mm10_v2_chr7_-_17027807_17027846	0.257539	Rfx3_Rfx1_Rfx4	ENSMUST00000142597.1|Ppp5c|ENSMUSG00000003099.5|protein phosphatase 5, catalytic subunit
mm10_v2_chr10_+_62449489_62449489	0.257489	Rfx3_Rfx1_Rfx4	ENSMUST00000181110.1|4930507D05Rik|ENSMUSG00000097129.1|RIKEN cDNA 4930507D05 gene
mm10_v2_chr7_-_140881811_140881869	0.257471	Rfx3_Rfx1_Rfx4	ENSMUST00000106048.3|Sirt3|ENSMUSG00000025486.10|sirtuin 3 	ENSMUST00000147331.2|Sirt3|ENSMUSG00000025486.10|sirtuin 3 	ENSMUST00000137710.1|Sirt3|ENSMUSG00000025486.10|sirtuin 3
mm10_v2_chr16_+_33056499_33056527	0.257464	Rfx3_Rfx1_Rfx4	ENSMUST00000115078.1|Rpl35a|ENSMUSG00000060636.7|ribosomal protein L35A
mm10_v2_chr9_-_110117379_110117445	0.256614	Rfx3_Rfx1_Rfx4	ENSMUST00000111991.2|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000149199.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000035056.7|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000148287.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000127744.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr5_+_137758133_137758213	0.256264	Rfx3_Rfx1_Rfx4	ENSMUST00000141733.1|Tsc22d4|ENSMUSG00000029723.10|TSC22 domain family, member 4 	ENSMUST00000110985.1|Tsc22d4|ENSMUSG00000029723.10|TSC22 domain family, member 4
mm10_v2_chr8_-_107403197_107403213	0.255527	Rfx3_Rfx1_Rfx4	ENSMUST00000003947.8|Nqo1|ENSMUSG00000003849.8|NAD(P)H dehydrogenase, quinone 1
mm10_v2_chr12_+_69963452_69963474	0.255286	Rfx3_Rfx1_Rfx4	ENSMUST00000110560.1|Gm3086|ENSMUSG00000079076.1|predicted gene 3086
mm10_v2_chr17_+_80207460_80207517	0.252169	Rfx3_Rfx1_Rfx4	ENSMUST00000134652.1|Ttc39d|ENSMUSG00000046196.4|tetratricopeptide repeat domain 39D
mm10_v2_chr8_-_78821136_78821143	0.251603	Rfx3_Rfx1_Rfx4	ENSMUST00000130325.1|Lsm6|ENSMUSG00000031683.10|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) 	ENSMUST00000051867.6|Lsm6|ENSMUSG00000031683.10|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm10_v2_chr4_-_153975038_153975126	0.251402	Rfx3_Rfx1_Rfx4	ENSMUST00000030893.2|Dffb|ENSMUSG00000029027.2|DNA fragmentation factor, beta subunit
mm10_v2_chr9_-_21760275_21760294	0.250253	Rfx3_Rfx1_Rfx4	ENSMUST00000098942.4|Spc24|ENSMUSG00000074476.5|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)
mm10_v2_chr1_+_191036812_191036825	0.249468	Rfx3_Rfx1_Rfx4	ENSMUST00000077889.6|1700022P22Rik|ENSMUSG00000057072.6|RIKEN cDNA 1700022P22 gene
mm10_v2_chr10_+_110745433_110745572	0.24676	Rfx3_Rfx1_Rfx4	ENSMUST00000174857.1|E2f7|ENSMUSG00000020185.10|E2F transcription factor 7 	ENSMUST00000073781.5|E2f7|ENSMUSG00000020185.10|E2F transcription factor 7 	ENSMUST00000173471.1|E2f7|ENSMUSG00000020185.10|E2F transcription factor 7 	ENSMUST00000173634.1|E2f7|ENSMUSG00000020185.10|E2F transcription factor 7
mm10_v2_chr6_+_125096145_125096162	0.245174	Rfx3_Rfx1_Rfx4	ENSMUST00000112390.1|Chd4|ENSMUSG00000063870.6|chromodomain helicase DNA binding protein 4
mm10_v2_chr16_+_33056453_33056495	0.244743	Rfx3_Rfx1_Rfx4	ENSMUST00000078804.5|Rpl35a|ENSMUSG00000060636.7|ribosomal protein L35A 	ENSMUST00000115079.1|Rpl35a|ENSMUSG00000060636.7|ribosomal protein L35A
mm10_v2_chr9_+_44398176_44398176	0.244681	Rfx3_Rfx1_Rfx4	ENSMUST00000165839.1|Slc37a4|ENSMUSG00000032114.8|solute carrier family 37 (glucose-6-phosphate transporter), member 4
mm10_v2_chr6_+_113392417_113392497	0.242719	Rfx3_Rfx1_Rfx4	ENSMUST00000032414.4|Ttll3|ENSMUSG00000030276.13|tubulin tyrosine ligase-like family, member 3 	ENSMUST00000038889.5|Ttll3|ENSMUSG00000030276.13|tubulin tyrosine ligase-like family, member 3
mm10_v2_chr8_+_109493982_109494027	0.241745	Rfx3_Rfx1_Rfx4	ENSMUST00000034162.6|Pmfbp1|ENSMUSG00000031727.7|polyamine modulated factor 1 binding protein 1
mm10_v2_chr17_-_31277327_31277356	0.240517	Rfx3_Rfx1_Rfx4	ENSMUST00000024832.7|Rsph1|ENSMUSG00000024033.9|radial spoke head 1 homolog (Chlamydomonas)
mm10_v2_chr17_-_24650270_24650311	0.239239	Rfx3_Rfx1_Rfx4	ENSMUST00000002572.4|Slc9a3r2|ENSMUSG00000002504.8|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm10_v2_chr10_-_39899238_39899238	0.238741	Rfx3_Rfx1_Rfx4	ENSMUST00000178563.1|AA474331|ENSMUSG00000096687.1|expressed sequence AA474331
mm10_v2_chr12_+_110889231_110889305	0.237986	Rfx3_Rfx1_Rfx4	ENSMUST00000169597.1|Tecpr2|ENSMUSG00000021275.9|tectonin beta-propeller repeat containing 2 	ENSMUST00000165978.1|Tecpr2|ENSMUSG00000021275.9|tectonin beta-propeller repeat containing 2
mm10_v2_chr1_-_59119748_59119806	0.237754	Rfx3_Rfx1_Rfx4	ENSMUST00000087475.4|Tmem237|ENSMUSG00000038079.8|transmembrane protein 237
mm10_v2_chr7_+_28180226_28180266	0.237126	Rfx3_Rfx1_Rfx4	ENSMUST00000172467.1|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm10_v2_chr18_+_52465676_52465710	0.235845	Rfx3_Rfx1_Rfx4	ENSMUST00000025406.7|Srfbp1|ENSMUSG00000024528.7|serum response factor binding protein 1
mm10_v2_chr16_-_43889669_43889685	0.235102	Rfx3_Rfx1_Rfx4	ENSMUST00000023387.7|Qtrtd1|ENSMUSG00000022704.9|queuine tRNA-ribosyltransferase domain containing 1
mm10_v2_chr17_+_6430112_6430204	0.234147	Rfx3_Rfx1_Rfx4	ENSMUST00000179569.1|Dynlt1b|ENSMUSG00000096255.1|dynein light chain Tctex-type 1B
mm10_v2_chr16_-_33056174_33056218	0.23306	Rfx3_Rfx1_Rfx4	ENSMUST00000115100.1|Iqcg|ENSMUSG00000035578.9|IQ motif containing G 	ENSMUST00000040309.8|Iqcg|ENSMUSG00000035578.9|IQ motif containing G
mm10_v2_chr9_-_99035679_99035718	0.231494	Rfx3_Rfx1_Rfx4	ENSMUST00000076730.6|Gm1123|ENSMUSG00000044860.8|predicted gene 1123
mm10_v2_chr13_+_43615710_43615788	0.229983	Rfx3_Rfx1_Rfx4	ENSMUST00000059986.2|Rnf182|ENSMUSG00000044164.2|ring finger protein 182
mm10_v2_chr11_-_120932832_120932876	0.228521	Rfx3_Rfx1_Rfx4	ENSMUST00000056781.4|Ccdc57|ENSMUSG00000048445.6|coiled-coil domain containing 57
mm10_v2_chr11_+_83302817_83302952	0.22751	Rfx3_Rfx1_Rfx4	ENSMUST00000142680.1|Ap2b1|ENSMUSG00000035152.8|adaptor-related protein complex 2, beta 1 subunit
mm10_v2_chr17_+_8165501_8165540	0.223766	Rfx3_Rfx1_Rfx4	ENSMUST00000097419.3|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner 	ENSMUST00000024636.8|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner
mm10_v2_chr10_-_80329426_80329498	0.223333	Rfx3_Rfx1_Rfx4	ENSMUST00000020340.8|Pcsk4|ENSMUSG00000020131.8|proprotein convertase subtilisin/kexin type 4
mm10_v2_chr6_+_149141638_149141663	0.222167	Rfx3_Rfx1_Rfx4	ENSMUST00000166416.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20 	ENSMUST00000111551.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20
mm10_v2_chr11_+_114668524_114668626	0.222157	Rfx3_Rfx1_Rfx4	ENSMUST00000106602.3|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000077915.3|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000106599.1|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000082092.4|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38
mm10_v2_chr9_+_8544196_8544225	0.221749	Rfx3_Rfx1_Rfx4	ENSMUST00000050433.6|Trpc6|ENSMUSG00000031997.8|transient receptor potential cation channel, subfamily C, member 6
mm10_v2_chr19_+_3282901_3283071	0.220744	Rfx3_Rfx1_Rfx4	ENSMUST00000025745.3|Mrpl21|ENSMUSG00000024829.6|mitochondrial ribosomal protein L21 	ENSMUST00000025743.6|Mrpl21|ENSMUSG00000024829.6|mitochondrial ribosomal protein L21
mm10_v2_chr7_+_4740178_4740206	0.22051	Rfx3_Rfx1_Rfx4	ENSMUST00000108583.2|Suv420h2|ENSMUSG00000059851.9|suppressor of variegation 4-20 homolog 2 (Drosophila)
mm10_v2_chr4_-_149774238_149774279	0.220337	Rfx3_Rfx1_Rfx4	ENSMUST00000105686.2|Slc25a33|ENSMUSG00000028982.9|solute carrier family 25, member 33
mm10_v2_chr4_-_56802265_56802331	0.220328	Rfx3_Rfx1_Rfx4	ENSMUST00000030140.2|Ikbkap|ENSMUSG00000028431.5|inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein
mm10_v2_chr16_-_23930787_23930787	0.21975	Rfx3_Rfx1_Rfx4	ENSMUST00000061030.8|Rtp2|ENSMUSG00000047531.8|receptor transporter protein 2
mm10_v2_chr12_-_31634592_31634677	0.218812	Rfx3_Rfx1_Rfx4	ENSMUST00000020979.7|Bcap29|ENSMUSG00000020650.8|B cell receptor associated protein 29 	ENSMUST00000177962.1|Bcap29|ENSMUSG00000020650.8|B cell receptor associated protein 29
mm10_v2_chr9_-_8042785_8042882	0.217435	Rfx3_Rfx1_Rfx4	ENSMUST00000065291.1|9230110C19Rik|ENSMUSG00000053070.4|RIKEN cDNA 9230110C19 gene
mm10_v2_chr7_-_140082489_140082556	0.21381	Rfx3_Rfx1_Rfx4	ENSMUST00000026541.7|Caly|ENSMUSG00000025468.8|calcyon neuron-specific vesicular protein
mm10_v2_chrX_+_152781986_152782029	0.213724	Rfx3_Rfx1_Rfx4	ENSMUST00000026383.3|Gpr143|ENSMUSG00000025333.4|G protein-coupled receptor 143
mm10_v2_chr7_+_126487344_126487390	0.212725	Rfx3_Rfx1_Rfx4	ENSMUST00000098048.4|Tufm|ENSMUSG00000073838.4|Tu translation elongation factor, mitochondrial 	ENSMUST00000106392.3|Tufm|ENSMUSG00000073838.4|Tu translation elongation factor, mitochondrial
mm10_v2_chr10_+_81606883_81607025	0.212034	Rfx3_Rfx1_Rfx4	ENSMUST00000119753.1|BC025920|ENSMUSG00000074862.5|cDNA sequence BC025920 	ENSMUST00000121138.1|BC025920|ENSMUSG00000074862.5|cDNA sequence BC025920 	ENSMUST00000099442.3|BC025920|ENSMUSG00000074862.5|cDNA sequence BC025920
mm10_v2_chr2_+_29890096_29890156	0.211932	Rfx3_Rfx1_Rfx4	ENSMUST00000113762.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000113765.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chrX_-_140062712_140062726	0.211457	Rfx3_Rfx1_Rfx4	ENSMUST00000133780.1|Nup62cl|ENSMUSG00000072944.5|nucleoporin 62 C-terminal like
mm10_v2_chr2_-_121271403_121271410	0.210528	Rfx3_Rfx1_Rfx4	ENSMUST00000110648.1|Trp53bp1|ENSMUSG00000043909.10|transformation related protein 53 binding protein 1
mm10_v2_chr11_+_101330605_101330605	0.20908	Rfx3_Rfx1_Rfx4	ENSMUST00000103105.3|Aoc3|ENSMUSG00000019326.8|amine oxidase, copper containing 3
mm10_v2_chr15_-_83122756_83122801	0.208581	Rfx3_Rfx1_Rfx4	ENSMUST00000018184.3|Rrp7a|ENSMUSG00000018040.3|ribosomal RNA processing 7 homolog A (S. cerevisiae)
mm10_v2_chr2_+_29889217_29889243	0.205635	Rfx3_Rfx1_Rfx4	ENSMUST00000123335.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr5_-_107987003_107987085	0.204892	Rfx3_Rfx1_Rfx4	ENSMUST00000145239.1|Fam69a|ENSMUSG00000029270.4|family with sequence similarity 69, member A 	ENSMUST00000031198.4|Fam69a|ENSMUSG00000029270.4|family with sequence similarity 69, member A
mm10_v2_chr9_+_95637601_95637632	0.203131	Rfx3_Rfx1_Rfx4	ENSMUST00000015498.8|Pcolce2|ENSMUSG00000015354.8|procollagen C-endopeptidase enhancer 2
mm10_v2_chr2_-_26380600_26380654	0.20288	Rfx3_Rfx1_Rfx4	ENSMUST00000114115.2|Snapc4|ENSMUSG00000036281.7|small nuclear RNA activating complex, polypeptide 4 	ENSMUST00000035427.4|Snapc4|ENSMUSG00000036281.7|small nuclear RNA activating complex, polypeptide 4
mm10_v2_chr6_-_90810118_90810160	0.201701	Rfx3_Rfx1_Rfx4	ENSMUST00000101151.3|Iqsec1|ENSMUSG00000034312.7|IQ motif and Sec7 domain 1
mm10_v2_chr3_-_89214329_89214372	0.201285	Rfx3_Rfx1_Rfx4	ENSMUST00000118964.2|Mtx1|ENSMUSG00000064068.7|metaxin 1
mm10_v2_chr5_+_138171997_138172021	0.200821	Rfx3_Rfx1_Rfx4	ENSMUST00000019662.4|Ap4m1|ENSMUSG00000019518.4|adaptor-related protein complex AP-4, mu 1 	ENSMUST00000151318.1|Ap4m1|ENSMUSG00000019518.4|adaptor-related protein complex AP-4, mu 1
mm10_v2_chr17_+_46254017_46254165	0.200774	Rfx3_Rfx1_Rfx4	ENSMUST00000095262.4|Lrrc73|ENSMUSG00000071073.4|leucine rich repeat containing 73
mm10_v2_chr6_+_149141513_149141619	0.200599	Rfx3_Rfx1_Rfx4	ENSMUST00000047531.9|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20 	ENSMUST00000179873.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20 	ENSMUST00000111548.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20 	ENSMUST00000111547.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20 	ENSMUST00000134306.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20
mm10_v2_chr6_-_115853346_115853389	0.200343	Rfx3_Rfx1_Rfx4	ENSMUST00000032469.6|Mbd4|ENSMUSG00000030322.6|methyl-CpG binding domain protein 4
mm10_v2_chr14_-_56778301_56778352	0.19916	Rfx3_Rfx1_Rfx4	ENSMUST00000022507.5|Pspc1|ENSMUSG00000021938.5|paraspeckle protein 1 	ENSMUST00000163924.1|Pspc1|ENSMUSG00000021938.5|paraspeckle protein 1
mm10_v2_chr10_+_23949516_23949516	0.198452	Rfx3_Rfx1_Rfx4	ENSMUST00000045152.4|Taar3|ENSMUSG00000069708.2|trace amine-associated receptor 3
mm10_v2_chr2_-_121271341_121271397	0.198012	Rfx3_Rfx1_Rfx4	ENSMUST00000110647.1|Trp53bp1|ENSMUSG00000043909.10|transformation related protein 53 binding protein 1
mm10_v2_chr9_+_62858085_62858138	0.197955	Rfx3_Rfx1_Rfx4	ENSMUST00000034777.6|Calml4|ENSMUSG00000032246.7|calmodulin-like 4 	ENSMUST00000163820.1|Calml4|ENSMUSG00000032246.7|calmodulin-like 4
mm10_v2_chr5_+_118027743_118027800	0.19761	Rfx3_Rfx1_Rfx4	ENSMUST00000031304.7|Tesc|ENSMUSG00000029359.7|tescalcin
mm10_v2_chr9_-_7176957_7176997	0.196868	Rfx3_Rfx1_Rfx4	ENSMUST00000147193.1|Dync2h1|ENSMUSG00000047193.9|dynein cytoplasmic 2 heavy chain 1 	ENSMUST00000139115.1|Dync2h1|ENSMUSG00000047193.9|dynein cytoplasmic 2 heavy chain 1
mm10_v2_chr5_+_123749696_123749735	0.196078	Rfx3_Rfx1_Rfx4	ENSMUST00000031366.7|Kntc1|ENSMUSG00000029414.7|kinetochore associated 1
mm10_v2_chr9_+_108508005_108508076	0.195818	Rfx3_Rfx1_Rfx4	ENSMUST00000006838.8|Qars|ENSMUSG00000032604.8|glutaminyl-tRNA synthetase 	ENSMUST00000134939.1|Qars|ENSMUSG00000032604.8|glutaminyl-tRNA synthetase
mm10_v2_chr10_+_20952547_20952593	0.193509	Rfx3_Rfx1_Rfx4	ENSMUST00000105525.4|Ahi1|ENSMUSG00000019986.10|Abelson helper integration site 1
mm10_v2_chr7_+_16816299_16816361	0.192133	Rfx3_Rfx1_Rfx4	ENSMUST00000108495.2|Strn4|ENSMUSG00000030374.9|striatin, calmodulin binding protein 4
mm10_v2_chr1_+_6730135_6730176	0.190859	Rfx3_Rfx1_Rfx4	ENSMUST00000155921.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chrX_-_136741155_136741352	0.18961	Rfx3_Rfx1_Rfx4	ENSMUST00000166930.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000113095.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000155207.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000080411.6|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000169418.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2
mm10_v2_chr13_+_49504774_49504816	0.189362	Rfx3_Rfx1_Rfx4	ENSMUST00000051504.7|Ecm2|ENSMUSG00000043631.7|extracellular matrix protein 2, female organ and adipocyte specific
mm10_v2_chr12_-_55821157_55821195	0.188974	Rfx3_Rfx1_Rfx4	ENSMUST00000110687.1|Ralgapa1|ENSMUSG00000021027.9|Ral GTPase activating protein, alpha subunit 1 	ENSMUST00000085385.5|Ralgapa1|ENSMUSG00000021027.9|Ral GTPase activating protein, alpha subunit 1
mm10_v2_chr8_-_95281590_95281610	0.186526	Rfx3_Rfx1_Rfx4	ENSMUST00000120044.2|Cngb1|ENSMUSG00000031789.10|cyclic nucleotide gated channel beta 1 	ENSMUST00000121162.2|Cngb1|ENSMUSG00000031789.10|cyclic nucleotide gated channel beta 1
mm10_v2_chr1_-_133801031_133801041	0.186336	Rfx3_Rfx1_Rfx4	ENSMUST00000143567.1|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4
mm10_v2_chr3_+_108085976_108085976	0.184798	Rfx3_Rfx1_Rfx4	ENSMUST00000070502.1|Gm12500|ENSMUSG00000056411.1|predicted gene 12500
mm10_v2_chr1_-_59120079_59120135	0.183832	Rfx3_Rfx1_Rfx4	ENSMUST00000094917.3|Tmem237|ENSMUSG00000038079.8|transmembrane protein 237
mm10_v2_chr9_+_50617516_50617561	0.183691	Rfx3_Rfx1_Rfx4	ENSMUST00000141366.1|Pih1d2|ENSMUSG00000000167.8|PIH1 domain containing 2
mm10_v2_chr8_+_67490758_67490758	0.182892	Rfx3_Rfx1_Rfx4	ENSMUST00000026677.3|Nat1|ENSMUSG00000025588.3|N-acetyl transferase 1
mm10_v2_chr7_-_4684963_4684997	0.182803	Rfx3_Rfx1_Rfx4	ENSMUST00000079970.4|Hspbp1|ENSMUSG00000063802.4|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
mm10_v2_chr9_-_7177000_7177063	0.18199	Rfx3_Rfx1_Rfx4	ENSMUST00000048417.6|Dync2h1|ENSMUSG00000047193.9|dynein cytoplasmic 2 heavy chain 1
mm10_v2_chr5_-_140702241_140702378	0.181092	Rfx3_Rfx1_Rfx4	ENSMUST00000077890.5|Iqce|ENSMUSG00000036555.8|IQ motif containing E 	ENSMUST00000041783.7|Iqce|ENSMUSG00000036555.8|IQ motif containing E 	ENSMUST00000142081.1|Iqce|ENSMUSG00000036555.8|IQ motif containing E
mm10_v2_chr15_+_81663889_81663958	0.180952	Rfx3_Rfx1_Rfx4	ENSMUST00000023029.8|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila) 	ENSMUST00000174229.1|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila) 	ENSMUST00000172748.1|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila)
mm10_v2_chr19_-_41802028_41802084	0.180152	Rfx3_Rfx1_Rfx4	ENSMUST00000026150.8|Arhgap19|ENSMUSG00000025154.8|Rho GTPase activating protein 19 	ENSMUST00000177495.1|Arhgap19|ENSMUSG00000025154.8|Rho GTPase activating protein 19 	ENSMUST00000163265.1|Arhgap19|ENSMUSG00000025154.8|Rho GTPase activating protein 19
mm10_v2_chr4_-_95052188_95052222	0.179737	Rfx3_Rfx1_Rfx4	ENSMUST00000107094.1|Jun|ENSMUSG00000052684.3|Jun oncogene
mm10_v2_chr10_+_81606303_81606303	0.179579	Rfx3_Rfx1_Rfx4	ENSMUST00000119492.1|BC025920|ENSMUSG00000074862.5|cDNA sequence BC025920
mm10_v2_chr2_+_21205719_21205787	0.178784	Rfx3_Rfx1_Rfx4	ENSMUST00000054591.3|Thnsl1|ENSMUSG00000048550.11|threonine synthase-like 1 (bacterial) 	ENSMUST00000102952.1|Thnsl1|ENSMUSG00000048550.11|threonine synthase-like 1 (bacterial) 	ENSMUST00000138965.1|Thnsl1|ENSMUSG00000048550.11|threonine synthase-like 1 (bacterial) 	ENSMUST00000138914.1|Thnsl1|ENSMUSG00000048550.11|threonine synthase-like 1 (bacterial) 	ENSMUST00000102951.1|Thnsl1|ENSMUSG00000048550.11|threonine synthase-like 1 (bacterial)
mm10_v2_chr4_+_53631506_53631574	0.175953	Rfx3_Rfx1_Rfx4	ENSMUST00000159415.2|Fsd1l|ENSMUSG00000054752.10|fibronectin type III and SPRY domain containing 1-like 	ENSMUST00000163067.2|Fsd1l|ENSMUSG00000054752.10|fibronectin type III and SPRY domain containing 1-like
mm10_v2_chr3_-_106001474_106001513	0.175922	Rfx3_Rfx1_Rfx4	ENSMUST00000066319.6|Pifo|ENSMUSG00000010136.8|primary cilia formation
mm10_v2_chr10_-_128547722_128547774	0.175541	Rfx3_Rfx1_Rfx4	ENSMUST00000040572.3|Zc3h10|ENSMUSG00000039810.5|zinc finger CCCH type containing 10
mm10_v2_chr2_+_164746028_164746039	0.175143	Rfx3_Rfx1_Rfx4	ENSMUST00000109327.3|Dnttip1|ENSMUSG00000017299.7|deoxynucleotidyltransferase, terminal, interacting protein 1
mm10_v2_chr6_+_137735078_137735151	0.175067	Rfx3_Rfx1_Rfx4	ENSMUST00000064910.6|Strap|ENSMUSG00000030224.10|serine/threonine kinase receptor associated protein
mm10_v2_chr5_-_129008546_129008596	0.175047	Rfx3_Rfx1_Rfx4	ENSMUST00000031378.7|Stx2|ENSMUSG00000029428.7|syntaxin 2
mm10_v2_chr8_+_71592158_71592291	0.174103	Rfx3_Rfx1_Rfx4	ENSMUST00000034264.4|Pgls|ENSMUSG00000031807.4|6-phosphogluconolactonase 	ENSMUST00000138742.1|Pgls|ENSMUSG00000031807.4|6-phosphogluconolactonase 	ENSMUST00000143441.1|Pgls|ENSMUSG00000031807.4|6-phosphogluconolactonase
mm10_v2_chr11_+_21091291_21091339	0.173686	Rfx3_Rfx1_Rfx4	ENSMUST00000093290.5|Peli1|ENSMUSG00000020134.7|pellino 1
mm10_v2_chr11_+_43474276_43474340	0.173026	Rfx3_Rfx1_Rfx4	ENSMUST00000173002.1|C1qtnf2|ENSMUSG00000046491.4|C1q and tumor necrosis factor related protein 2 	ENSMUST00000057679.3|C1qtnf2|ENSMUSG00000046491.4|C1q and tumor necrosis factor related protein 2
mm10_v2_chr3_+_103968110_103968446	0.172943	Rfx3_Rfx1_Rfx4	ENSMUST00000117150.1|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000063717.7|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000055425.8|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000123611.1|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000090685.4|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1
mm10_v2_chr11_-_3193388_3193463	0.171861	Rfx3_Rfx1_Rfx4	ENSMUST00000081318.6|Sfi1|ENSMUSG00000023764.12|Sfi1 homolog, spindle assembly associated (yeast) 	ENSMUST00000142315.1|Sfi1|ENSMUSG00000023764.12|Sfi1 homolog, spindle assembly associated (yeast) 	ENSMUST00000118627.1|Sfi1|ENSMUSG00000023764.12|Sfi1 homolog, spindle assembly associated (yeast) 	ENSMUST00000066391.7|Sfi1|ENSMUSG00000023764.12|Sfi1 homolog, spindle assembly associated (yeast)
mm10_v2_chr14_+_60784558_60784675	0.171387	Rfx3_Rfx1_Rfx4	ENSMUST00000063562.7|Mipep|ENSMUSG00000021993.9|mitochondrial intermediate peptidase
mm10_v2_chr1_-_86359455_86359486	0.170682	Rfx3_Rfx1_Rfx4	ENSMUST00000027438.6|Ncl|ENSMUSG00000026234.6|nucleolin
mm10_v2_chr6_-_83156393_83156400	0.169461	Rfx3_Rfx1_Rfx4	ENSMUST00000153148.1|Wdr54|ENSMUSG00000030032.6|WD repeat domain 54 	ENSMUST00000125894.1|Wdr54|ENSMUSG00000030032.6|WD repeat domain 54
mm10_v2_chr10_+_62980233_62980262	0.168877	Rfx3_Rfx1_Rfx4	ENSMUST00000131718.1|Rufy2|ENSMUSG00000020070.12|RUN and FYVE domain-containing 2 	ENSMUST00000119567.1|Rufy2|ENSMUSG00000020070.12|RUN and FYVE domain-containing 2 	ENSMUST00000122231.1|Rufy2|ENSMUSG00000020070.12|RUN and FYVE domain-containing 2
mm10_v2_chr19_-_7241216_7241226	0.16871	Rfx3_Rfx1_Rfx4	ENSMUST00000025675.9|Naa40|ENSMUSG00000024764.9|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
mm10_v2_chr2_+_126152141_126152212	0.167182	Rfx3_Rfx1_Rfx4	ENSMUST00000170908.1|Dtwd1|ENSMUSG00000023330.6|DTW domain containing 1
mm10_v2_chr1_-_155417394_155417435	0.166313	Rfx3_Rfx1_Rfx4	ENSMUST00000111775.1|Xpr1|ENSMUSG00000026469.8|xenotropic and polytropic retrovirus receptor 1 	ENSMUST00000111774.1|Xpr1|ENSMUSG00000026469.8|xenotropic and polytropic retrovirus receptor 1
mm10_v2_chrX_-_8132770_8132857	0.166082	Rfx3_Rfx1_Rfx4	ENSMUST00000130832.1|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13 	ENSMUST00000033506.6|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13 	ENSMUST00000115623.1|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13 	ENSMUST00000153839.1|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13
mm10_v2_chr14_-_20452217_20452241	0.165532	Rfx3_Rfx1_Rfx4	ENSMUST00000144797.1|Ttc18|ENSMUSG00000039543.9|tetratricopeptide repeat domain 18 	ENSMUST00000151077.1|Ttc18|ENSMUSG00000039543.9|tetratricopeptide repeat domain 18 	ENSMUST00000022348.7|Ttc18|ENSMUSG00000039543.9|tetratricopeptide repeat domain 18 	ENSMUST00000056073.6|Ttc18|ENSMUSG00000039543.9|tetratricopeptide repeat domain 18 	ENSMUST00000022349.6|Ttc18|ENSMUSG00000039543.9|tetratricopeptide repeat domain 18
mm10_v2_chr17_-_33955658_33955717	0.164846	Rfx3_Rfx1_Rfx4	ENSMUST00000174609.2|Rps18|ENSMUSG00000008668.8|ribosomal protein S18 	ENSMUST00000008812.7|Rps18|ENSMUSG00000008668.8|ribosomal protein S18
mm10_v2_chr11_-_100619576_100619596	0.164225	Rfx3_Rfx1_Rfx4	ENSMUST00000155152.1|Dnajc7|ENSMUSG00000014195.9|DnaJ (Hsp40) homolog, subfamily C, member 7
mm10_v2_chr9_-_110117303_110117353	0.16419	Rfx3_Rfx1_Rfx4	ENSMUST00000136969.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr9_-_63602417_63602460	0.1638	Rfx3_Rfx1_Rfx4	ENSMUST00000171243.1|Iqch|ENSMUSG00000037801.7|IQ motif containing H 	ENSMUST00000163982.1|Iqch|ENSMUSG00000037801.7|IQ motif containing H 	ENSMUST00000163624.1|Iqch|ENSMUSG00000037801.7|IQ motif containing H
mm10_v2_chr19_+_6364557_6364668	0.162538	Rfx3_Rfx1_Rfx4	ENSMUST00000155973.1|Sf1|ENSMUSG00000024949.11|splicing factor 1
mm10_v2_chr2_+_145934800_145934816	0.16229	Rfx3_Rfx1_Rfx4	ENSMUST00000138774.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene 	ENSMUST00000152515.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene 	ENSMUST00000130168.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene 	ENSMUST00000133433.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene 	ENSMUST00000118002.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene
mm10_v2_chr2_+_153492790_153492790	0.16147	Rfx3_Rfx1_Rfx4	ENSMUST00000109783.1|4930404H24Rik|ENSMUSG00000079001.1|RIKEN cDNA 4930404H24 gene
mm10_v2_chr17_-_35703971_35703994	0.160941	Rfx3_Rfx1_Rfx4	ENSMUST00000148065.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr17_+_35879770_35879824	0.160662	Rfx3_Rfx1_Rfx4	ENSMUST00000025292.8|Dhx16|ENSMUSG00000024422.8|DEAH (Asp-Glu-Ala-His) box polypeptide 16
mm10_v2_chr1_+_91494631_91494698	0.160593	Rfx3_Rfx1_Rfx4	ENSMUST00000047242.7|Traf3ip1|ENSMUSG00000034292.7|TRAF3 interacting protein 1
mm10_v2_chr8_+_95534078_95534123	0.159923	Rfx3_Rfx1_Rfx4	ENSMUST00000041569.3|Ccdc113|ENSMUSG00000036598.3|coiled-coil domain containing 113
mm10_v2_chr9_+_78051938_78051958	0.159627	Rfx3_Rfx1_Rfx4	ENSMUST00000024104.7|Gcm1|ENSMUSG00000023333.7|glial cells missing homolog 1 (Drosophila)
mm10_v2_chr12_-_11265768_11265816	0.159127	Rfx3_Rfx1_Rfx4	ENSMUST00000166117.1|Gen1|ENSMUSG00000051235.8|Gen homolog 1, endonuclease (Drosophila)
mm10_v2_chr18_+_56707725_56707940	0.158607	Rfx3_Rfx1_Rfx4	ENSMUST00000025486.8|Lmnb1|ENSMUSG00000024590.8|lamin B1
mm10_v2_chr11_-_115322025_115322064	0.158543	Rfx3_Rfx1_Rfx4	ENSMUST00000103037.4|Ush1g|ENSMUSG00000045288.10|Usher syndrome 1G
mm10_v2_chr3_-_116508035_116508070	0.157976	Rfx3_Rfx1_Rfx4	ENSMUST00000153005.1|Rtca|ENSMUSG00000000339.8|RNA 3'-terminal phosphate cyclase
mm10_v2_chr3_+_68468162_68468209	0.157937	Rfx3_Rfx1_Rfx4	ENSMUST00000182532.1|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr10_-_82690608_82690650	0.157129	Rfx3_Rfx1_Rfx4	ENSMUST00000065815.6|Glt8d2|ENSMUSG00000020251.7|glycosyltransferase 8 domain containing 2 	ENSMUST00000020485.3|Glt8d2|ENSMUSG00000020251.7|glycosyltransferase 8 domain containing 2
mm10_v2_chr7_+_4740111_4740120	0.157084	Rfx3_Rfx1_Rfx4	ENSMUST00000098853.2|Suv420h2|ENSMUSG00000059851.9|suppressor of variegation 4-20 homolog 2 (Drosophila)
mm10_v2_chr15_-_79141197_79141268	0.156622	Rfx3_Rfx1_Rfx4	ENSMUST00000169604.1|1700088E04Rik|ENSMUSG00000033029.6|RIKEN cDNA 1700088E04 gene
mm10_v2_chr6_+_115853470_115853598	0.156375	Rfx3_Rfx1_Rfx4	ENSMUST00000112925.1|Ift122|ENSMUSG00000030323.7|intraflagellar transport 122 	ENSMUST00000112923.1|Ift122|ENSMUSG00000030323.7|intraflagellar transport 122 	ENSMUST00000038234.6|Ift122|ENSMUSG00000030323.7|intraflagellar transport 122
mm10_v2_chr5_+_135632618_135632647	0.1558	Rfx3_Rfx1_Rfx4	ENSMUST00000043707.6|Rhbdd2|ENSMUSG00000039917.6|rhomboid domain containing 2
mm10_v2_chr10_-_128645965_128645991	0.155659	Rfx3_Rfx1_Rfx4	ENSMUST00000133342.1|Ikzf4|ENSMUSG00000002578.9|IKAROS family zinc finger 4
mm10_v2_chr10_+_122678764_122678811	0.155394	Rfx3_Rfx1_Rfx4	ENSMUST00000161487.1|Ppm1h|ENSMUSG00000034613.6|protein phosphatase 1H (PP2C domain containing) 	ENSMUST00000067918.5|Ppm1h|ENSMUSG00000034613.6|protein phosphatase 1H (PP2C domain containing)
mm10_v2_chr5_-_129008494_129008537	0.154057	Rfx3_Rfx1_Rfx4	ENSMUST00000100680.3|Stx2|ENSMUSG00000029428.7|syntaxin 2
mm10_v2_chrX_+_151198078_151198140	0.153646	Rfx3_Rfx1_Rfx4	ENSMUST00000184730.1|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3 	ENSMUST00000184392.1|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3 	ENSMUST00000096285.4|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3
mm10_v2_chr7_+_16944645_16944720	0.153528	Rfx3_Rfx1_Rfx4	ENSMUST00000094807.5|Pnmal2|ENSMUSG00000070802.5|PNMA-like 2
mm10_v2_chr17_+_88440711_88440741	0.151521	Rfx3_Rfx1_Rfx4	ENSMUST00000112238.2|Foxn2|ENSMUSG00000034998.12|forkhead box N2 	ENSMUST00000155640.1|Foxn2|ENSMUSG00000034998.12|forkhead box N2
mm10_v2_chr1_-_156421146_156421159	0.151222	Rfx3_Rfx1_Rfx4	ENSMUST00000178036.1|Axdnd1|ENSMUSG00000026601.7|axonemal dynein light chain domain containing 1
mm10_v2_chr8_+_122422020_122422020	0.150843	Rfx3_Rfx1_Rfx4	ENSMUST00000050963.3|Il17c|ENSMUSG00000046108.3|interleukin 17C
mm10_v2_chr2_+_36136384_36136428	0.149366	Rfx3_Rfx1_Rfx4	ENSMUST00000028250.2|Mrrf|ENSMUSG00000026887.3|mitochondrial ribosome recycling factor
mm10_v2_chr5_-_120634235_120634294	0.149006	Rfx3_Rfx1_Rfx4	ENSMUST00000177908.1|Ccdc42b|ENSMUSG00000094282.1|coiled-coil domain containing 42B
mm10_v2_chr8_+_78213292_78213371	0.148987	Rfx3_Rfx1_Rfx4	ENSMUST00000117845.1|Ttc29|ENSMUSG00000037101.10|tetratricopeptide repeat domain 29 	ENSMUST00000126172.1|Ttc29|ENSMUSG00000037101.10|tetratricopeptide repeat domain 29 	ENSMUST00000049395.8|Ttc29|ENSMUSG00000037101.10|tetratricopeptide repeat domain 29
mm10_v2_chr4_-_129662442_129662485	0.147036	Rfx3_Rfx1_Rfx4	ENSMUST00000003828.4|Kpna6|ENSMUSG00000003731.7|karyopherin (importin) alpha 6
mm10_v2_chr5_-_115652974_115652992	0.146904	Rfx3_Rfx1_Rfx4	ENSMUST00000121746.1|Ccdc64|ENSMUSG00000041609.10|coiled-coil domain containing 64 	ENSMUST00000118576.1|Ccdc64|ENSMUSG00000041609.10|coiled-coil domain containing 64
mm10_v2_chr3_+_57425314_57425452	0.146835	Rfx3_Rfx1_Rfx4	ENSMUST00000029377.7|Tm4sf4|ENSMUSG00000027801.7|transmembrane 4 superfamily member 4
mm10_v2_chr4_-_126753372_126753440	0.146817	Rfx3_Rfx1_Rfx4	ENSMUST00000030637.7|Ncdn|ENSMUSG00000028833.7|neurochondrin 	ENSMUST00000106116.1|Ncdn|ENSMUSG00000028833.7|neurochondrin
mm10_v2_chr14_-_70153811_70153846	0.146137	Rfx3_Rfx1_Rfx4	ENSMUST00000035612.5|Ccar2|ENSMUSG00000033712.5|cell cycle activator and apoptosis regulator 2
mm10_v2_chr11_+_48800357_48800369	0.145714	Rfx3_Rfx1_Rfx4	ENSMUST00000020640.7|Gnb2l1|ENSMUSG00000020372.9|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1
mm10_v2_chr4_-_141874879_141874953	0.14489	Rfx3_Rfx1_Rfx4	ENSMUST00000036854.3|Efhd2|ENSMUSG00000040659.3|EF hand domain containing 2
mm10_v2_chr2_-_30178422_30178473	0.144383	Rfx3_Rfx1_Rfx4	ENSMUST00000100220.4|D2Wsu81e|ENSMUSG00000039660.10|DNA segment, Chr 2, Wayne State University 81, expressed 	ENSMUST00000179795.1|D2Wsu81e|ENSMUSG00000039660.10|DNA segment, Chr 2, Wayne State University 81, expressed
mm10_v2_chr9_+_44072196_44072211	0.144358	Rfx3_Rfx1_Rfx4	ENSMUST00000176671.1|Usp2|ENSMUSG00000032010.8|ubiquitin specific peptidase 2
mm10_v2_chr10_+_61595484_61595484	0.144327	Rfx3_Rfx1_Rfx4	ENSMUST00000020287.5|Npffr1|ENSMUSG00000020090.5|neuropeptide FF receptor 1
mm10_v2_chr6_+_65042575_65042667	0.14418	Rfx3_Rfx1_Rfx4	ENSMUST00000031984.6|Smarcad1|ENSMUSG00000029920.7|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm10_v2_chr4_+_141213948_141213998	0.14311	Rfx3_Rfx1_Rfx4	ENSMUST00000097813.2|Rsg1|ENSMUSG00000073733.4|REM2 and RAB-like small GTPase 1
mm10_v2_chr4_-_41464816_41464892	0.142597	Rfx3_Rfx1_Rfx4	ENSMUST00000108055.2|Kif24|ENSMUSG00000028438.10|kinesin family member 24 	ENSMUST00000154535.1|Kif24|ENSMUSG00000028438.10|kinesin family member 24 	ENSMUST00000030148.5|Kif24|ENSMUSG00000028438.10|kinesin family member 24
mm10_v2_chr6_+_83109071_83109114	0.142031	Rfx3_Rfx1_Rfx4	ENSMUST00000113938.3|Mrpl53|ENSMUSG00000030037.8|mitochondrial ribosomal protein L53
mm10_v2_chr10_-_81407641_81407683	0.14176	Rfx3_Rfx1_Rfx4	ENSMUST00000140916.1|Nfic|ENSMUSG00000055053.11|nuclear factor I/C
mm10_v2_chr16_+_43889896_43889930	0.140608	Rfx3_Rfx1_Rfx4	ENSMUST00000122014.1|2610015P09Rik|ENSMUSG00000022701.11|RIKEN cDNA 2610015P09 gene 	ENSMUST00000178400.1|2610015P09Rik|ENSMUSG00000022701.11|RIKEN cDNA 2610015P09 gene
mm10_v2_chr11_+_87853207_87853249	0.140459	Rfx3_Rfx1_Rfx4	ENSMUST00000038196.6|Mks1|ENSMUSG00000034121.6|Meckel syndrome, type 1
mm10_v2_chr2_+_29890063_29890081	0.139697	Rfx3_Rfx1_Rfx4	ENSMUST00000028128.6|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr10_-_40025253_40025286	0.139492	Rfx3_Rfx1_Rfx4	ENSMUST00000163705.2|AI317395|ENSMUSG00000038522.6|expressed sequence AI317395
mm10_v2_chr3_-_101287879_101287893	0.138673	Rfx3_Rfx1_Rfx4	ENSMUST00000152321.1|Cd2|ENSMUSG00000027863.8|CD2 antigen
mm10_v2_chr1_+_86154752_86154821	0.138168	Rfx3_Rfx1_Rfx4	ENSMUST00000113309.2|Armc9|ENSMUSG00000062590.7|armadillo repeat containing 9 	ENSMUST00000027434.8|Armc9|ENSMUSG00000062590.7|armadillo repeat containing 9 	ENSMUST00000131412.1|Armc9|ENSMUSG00000062590.7|armadillo repeat containing 9
mm10_v2_chr11_-_69549108_69549108	0.137477	Rfx3_Rfx1_Rfx4	ENSMUST00000108659.1|Dnah2|ENSMUSG00000005237.7|dynein, axonemal, heavy chain 2
mm10_v2_chr7_-_82648469_82648545	0.136659	Rfx3_Rfx1_Rfx4	ENSMUST00000056728.4|Fam154b|ENSMUSG00000038570.8|family with sequence similarity 154, member B
mm10_v2_chr18_-_60713389_60713389	0.136437	Rfx3_Rfx1_Rfx4	ENSMUST00000169273.1|Ndst1|ENSMUSG00000054008.8|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
mm10_v2_chrX_+_166170449_166170512	0.136316	Rfx3_Rfx1_Rfx4	ENSMUST00000130880.2|Gemin8|ENSMUSG00000040621.8|gem (nuclear organelle) associated protein 8 	ENSMUST00000056410.4|Gemin8|ENSMUSG00000040621.8|gem (nuclear organelle) associated protein 8 	ENSMUST00000096252.3|Gemin8|ENSMUSG00000040621.8|gem (nuclear organelle) associated protein 8 	ENSMUST00000087169.4|Gemin8|ENSMUSG00000040621.8|gem (nuclear organelle) associated protein 8
mm10_v2_chr1_+_171767123_171767138	0.132791	Rfx3_Rfx1_Rfx4	ENSMUST00000015460.4|Slamf1|ENSMUSG00000015316.10|signaling lymphocytic activation molecule family member 1
mm10_v2_chr11_-_105456674_105456751	0.132758	Rfx3_Rfx1_Rfx4	ENSMUST00000049995.3|March10|ENSMUSG00000078627.3|membrane-associated ring finger (C3HC4) 10 	ENSMUST00000100332.3|March10|ENSMUSG00000078627.3|membrane-associated ring finger (C3HC4) 10
mm10_v2_chr6_+_119479668_119479795	0.131306	Rfx3_Rfx1_Rfx4	ENSMUST00000032094.5|Fbxl14|ENSMUSG00000030019.5|F-box and leucine-rich repeat protein 14
mm10_v2_chr10_+_23960494_23960494	0.131105	Rfx3_Rfx1_Rfx4	ENSMUST00000092660.1|Taar4|ENSMUSG00000069707.1|trace amine-associated receptor 4
mm10_v2_chrX_+_134601179_134601266	0.130793	Rfx3_Rfx1_Rfx4	ENSMUST00000074950.4|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000113203.1|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000113202.1|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2
mm10_v2_chr4_+_134102581_134102618	0.129817	Rfx3_Rfx1_Rfx4	ENSMUST00000074690.4|Ubxn11|ENSMUSG00000012126.10|UBX domain protein 11 	ENSMUST00000070246.2|Ubxn11|ENSMUSG00000012126.10|UBX domain protein 11 	ENSMUST00000156750.1|Ubxn11|ENSMUSG00000012126.10|UBX domain protein 11
mm10_v2_chrX_-_48594373_48594493	0.129216	Rfx3_Rfx1_Rfx4	ENSMUST00000088898.4|Zfp280c|ENSMUSG00000036916.7|zinc finger protein 280C 	ENSMUST00000072292.5|Zfp280c|ENSMUSG00000036916.7|zinc finger protein 280C
mm10_v2_chr1_-_93160870_93160955	0.128407	Rfx3_Rfx1_Rfx4	ENSMUST00000143419.1|2310007B03Rik|ENSMUSG00000034159.6|RIKEN cDNA 2310007B03 gene 	ENSMUST00000043718.5|2310007B03Rik|ENSMUSG00000034159.6|RIKEN cDNA 2310007B03 gene
mm10_v2_chr7_+_44465391_44465419	0.126639	Rfx3_Rfx1_Rfx4	ENSMUST00000035929.4|Aspdh|ENSMUSG00000038704.4|aspartate dehydrogenase domain containing 	ENSMUST00000146128.1|Aspdh|ENSMUSG00000038704.4|aspartate dehydrogenase domain containing
mm10_v2_chr2_-_90904827_90904940	0.126304	Rfx3_Rfx1_Rfx4	ENSMUST00000005647.3|Ndufs3|ENSMUSG00000005510.3|NADH dehydrogenase (ubiquinone) Fe-S protein 3
mm10_v2_chr4_+_53631460_53631505	0.126051	Rfx3_Rfx1_Rfx4	ENSMUST00000179534.1|Fsd1l|ENSMUSG00000054752.10|fibronectin type III and SPRY domain containing 1-like 	ENSMUST00000132151.1|Fsd1l|ENSMUSG00000054752.10|fibronectin type III and SPRY domain containing 1-like
mm10_v2_chr8_+_85299632_85299667	0.124908	Rfx3_Rfx1_Rfx4	ENSMUST00000034132.5|Orc6|ENSMUSG00000031697.5|origin recognition complex, subunit 6 	ENSMUST00000170141.1|Orc6|ENSMUSG00000031697.5|origin recognition complex, subunit 6
mm10_v2_chr9_-_60687459_60687672	0.122417	Rfx3_Rfx1_Rfx4	ENSMUST00000114032.1|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49 	ENSMUST00000166168.1|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49 	ENSMUST00000132366.1|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49
mm10_v2_chr16_-_16560201_16560223	0.122224	Rfx3_Rfx1_Rfx4	ENSMUST00000162045.1|Fgd4|ENSMUSG00000022788.10|FYVE, RhoGEF and PH domain containing 4 	ENSMUST00000162124.1|Fgd4|ENSMUSG00000022788.10|FYVE, RhoGEF and PH domain containing 4 	ENSMUST00000161861.1|Fgd4|ENSMUSG00000022788.10|FYVE, RhoGEF and PH domain containing 4
mm10_v2_chr5_+_134099704_134099760	0.121658	Rfx3_Rfx1_Rfx4	ENSMUST00000016088.8|Gatsl2|ENSMUSG00000015944.8|GATS protein-like 2
mm10_v2_chr11_+_88047693_88047727	0.1207	Rfx3_Rfx1_Rfx4	ENSMUST00000079866.4|Srsf1|ENSMUSG00000018379.11|serine/arginine-rich splicing factor 1
mm10_v2_chr4_+_10874498_10874607	0.120091	Rfx3_Rfx1_Rfx4	ENSMUST00000080517.7|2610301B20Rik|ENSMUSG00000059482.9|RIKEN cDNA 2610301B20 gene 	ENSMUST00000101504.2|2610301B20Rik|ENSMUSG00000059482.9|RIKEN cDNA 2610301B20 gene
mm10_v2_chrX_-_133898292_133898377	0.119915	Rfx3_Rfx1_Rfx4	ENSMUST00000176718.1|Tspan6|ENSMUSG00000067377.6|tetraspanin 6 	ENSMUST00000176641.1|Tspan6|ENSMUSG00000067377.6|tetraspanin 6
mm10_v2_chr7_+_24547150_24547244	0.119595	Rfx3_Rfx1_Rfx4	ENSMUST00000063249.8|Xrcc1|ENSMUSG00000051768.8|X-ray repair complementing defective repair in Chinese hamster cells 1
mm10_v2_chr13_-_100104064_100104082	0.119339	Rfx3_Rfx1_Rfx4	ENSMUST00000038104.5|Bdp1|ENSMUSG00000049658.7|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
mm10_v2_chr9_+_46282997_46283024	0.118415	Rfx3_Rfx1_Rfx4	ENSMUST00000074957.3|Bud13|ENSMUSG00000032077.4|BUD13 homolog (yeast)
mm10_v2_chr15_+_75993756_75993832	0.118335	Rfx3_Rfx1_Rfx4	ENSMUST00000089669.4|Mapk15|ENSMUSG00000063704.6|mitogen-activated protein kinase 15
mm10_v2_chr2_+_163658370_163658510	0.116197	Rfx3_Rfx1_Rfx4	ENSMUST00000164399.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000064703.6|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000099105.2|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000152418.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000126182.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000131228.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma
mm10_v2_chr1_+_118389058_118389058	0.115967	Rfx3_Rfx1_Rfx4	ENSMUST00000049404.6|Clasp1|ENSMUSG00000064302.7|CLIP associating protein 1 	ENSMUST00000070989.7|Clasp1|ENSMUSG00000064302.7|CLIP associating protein 1 	ENSMUST00000165223.1|Clasp1|ENSMUSG00000064302.7|CLIP associating protein 1 	ENSMUST00000178710.1|Clasp1|ENSMUSG00000064302.7|CLIP associating protein 1
mm10_v2_chr9_+_108479849_108479916	0.115769	Rfx3_Rfx1_Rfx4	ENSMUST00000065014.4|Lamb2|ENSMUSG00000052911.4|laminin, beta 2
mm10_v2_chr5_+_147430407_147430545	0.114702	Rfx3_Rfx1_Rfx4	ENSMUST00000176600.1|Pan3|ENSMUSG00000029647.9|PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm10_v2_chr2_+_152427639_152427699	0.113339	Rfx3_Rfx1_Rfx4	ENSMUST00000128737.1|6820408C15Rik|ENSMUSG00000032680.5|RIKEN cDNA 6820408C15 gene
mm10_v2_chr3_-_108085346_108085412	0.11208	Rfx3_Rfx1_Rfx4	ENSMUST00000078912.5|Ampd2|ENSMUSG00000027889.11|adenosine monophosphate deaminase 2
mm10_v2_chr12_+_110850273_110850302	0.111735	Rfx3_Rfx1_Rfx4	ENSMUST00000170060.2|Zfp839|ENSMUSG00000021271.4|zinc finger protein 839
mm10_v2_chr9_-_54501496_54501644	0.110634	Rfx3_Rfx1_Rfx4	ENSMUST00000118600.1|Dmxl2|ENSMUSG00000041268.10|Dmx-like 2 	ENSMUST00000118163.1|Dmxl2|ENSMUSG00000041268.10|Dmx-like 2
mm10_v2_chr3_-_127225847_127225915	0.110284	Rfx3_Rfx1_Rfx4	ENSMUST00000182726.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain 	ENSMUST00000182779.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr16_+_17619341_17619389	0.10888	Rfx3_Rfx1_Rfx4	ENSMUST00000006053.6|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000171435.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000163476.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000168101.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000165363.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000169662.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000090159.4|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000172182.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000163592.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4
mm10_v2_chr5_-_148928619_148928659	0.108554	Rfx3_Rfx1_Rfx4	ENSMUST00000149169.1|Katnal1|ENSMUSG00000041298.9|katanin p60 subunit A-like 1 	ENSMUST00000047257.8|Katnal1|ENSMUSG00000041298.9|katanin p60 subunit A-like 1
mm10_v2_chr2_-_109280718_109280767	0.108271	Rfx3_Rfx1_Rfx4	ENSMUST00000147770.1|Mettl15|ENSMUSG00000057234.3|methyltransferase like 15
mm10_v2_chr11_-_120467414_120467600	0.107433	Rfx3_Rfx1_Rfx4	ENSMUST00000076921.6|Arl16|ENSMUSG00000057594.6|ADP-ribosylation factor-like 16
mm10_v2_chr17_-_46247968_46248054	0.107161	Rfx3_Rfx1_Rfx4	ENSMUST00000142706.2|Polr1c|ENSMUSG00000067148.9|polymerase (RNA) I polypeptide C 	ENSMUST00000173349.1|Polr1c|ENSMUSG00000067148.9|polymerase (RNA) I polypeptide C 	ENSMUST00000087026.6|Polr1c|ENSMUSG00000067148.9|polymerase (RNA) I polypeptide C
mm10_v2_chr16_-_16560046_16560145	0.10633	Rfx3_Rfx1_Rfx4	ENSMUST00000172181.2|Fgd4|ENSMUSG00000022788.10|FYVE, RhoGEF and PH domain containing 4
mm10_v2_chr1_+_93685574_93685694	0.105849	Rfx3_Rfx1_Rfx4	ENSMUST00000027499.6|Bok|ENSMUSG00000026278.8|BCL2-related ovarian killer protein
mm10_v2_chr17_-_35704000_35704139	0.105815	Rfx3_Rfx1_Rfx4	ENSMUST00000097333.3|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1 	ENSMUST00000003628.6|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr3_+_122245557_122245578	0.105029	Rfx3_Rfx1_Rfx4	ENSMUST00000029769.7|Gclm|ENSMUSG00000028124.9|glutamate-cysteine ligase, modifier subunit
mm10_v2_chr7_-_92637079_92637147	0.104577	Rfx3_Rfx1_Rfx4	ENSMUST00000056106.7|Ankrd42|ENSMUSG00000041343.12|ankyrin repeat domain 42 	ENSMUST00000118157.1|Ankrd42|ENSMUSG00000041343.12|ankyrin repeat domain 42
mm10_v2_chr19_+_4855129_4855269	0.10396	Rfx3_Rfx1_Rfx4	ENSMUST00000119694.1|Ctsf|ENSMUSG00000083282.2|cathepsin F
mm10_v2_chr11_-_107337556_107337637	0.103335	Rfx3_Rfx1_Rfx4	ENSMUST00000040380.6|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr11_+_70130329_70130424	0.102479	Rfx3_Rfx1_Rfx4	ENSMUST00000041550.5|Mgl2|ENSMUSG00000040950.7|macrophage galactose N-acetyl-galactosamine specific lectin 2 	ENSMUST00000165951.1|Mgl2|ENSMUSG00000040950.7|macrophage galactose N-acetyl-galactosamine specific lectin 2
mm10_v2_chr1_+_6730051_6730117	0.102196	Rfx3_Rfx1_Rfx4	ENSMUST00000043578.6|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000131467.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000150761.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000151281.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr18_-_12305638_12305720	0.101328	Rfx3_Rfx1_Rfx4	ENSMUST00000122408.1|Ankrd29|ENSMUSG00000057766.7|ankyrin repeat domain 29 	ENSMUST00000118525.1|Ankrd29|ENSMUSG00000057766.7|ankyrin repeat domain 29 	ENSMUST00000142066.1|Ankrd29|ENSMUSG00000057766.7|ankyrin repeat domain 29
mm10_v2_chr2_-_28583189_28583230	0.100611	Rfx3_Rfx1_Rfx4	ENSMUST00000113889.2|Gtf3c5|ENSMUSG00000026816.8|general transcription factor IIIC, polypeptide 5
mm10_v2_chr7_+_19076242_19076273	0.100269	Rfx3_Rfx1_Rfx4	ENSMUST00000032570.7|Dmwd|ENSMUSG00000030410.10|dystrophia myotonica-containing WD repeat motif 	ENSMUST00000108479.1|Dmwd|ENSMUSG00000030410.10|dystrophia myotonica-containing WD repeat motif
mm10_v2_chrX_+_56787701_56787725	0.100033	Rfx3_Rfx1_Rfx4	ENSMUST00000151033.1|Fhl1|ENSMUSG00000023092.10|four and a half LIM domains 1
mm10_v2_chr6_+_126853091_126853116	0.0991295	Rfx3_Rfx1_Rfx4	ENSMUST00000095440.5|Akap3|ENSMUSG00000030344.8|A kinase (PRKA) anchor protein 3
mm10_v2_chr11_-_78245942_78245987	0.0987493	Rfx3_Rfx1_Rfx4	ENSMUST00000002121.4|Supt6|ENSMUSG00000002052.6|suppressor of Ty 6
mm10_v2_chr11_-_74897052_74897094	0.0980816	Rfx3_Rfx1_Rfx4	ENSMUST00000057631.5|Sgsm2|ENSMUSG00000038351.8|small G protein signaling modulator 2 	ENSMUST00000081799.5|Sgsm2|ENSMUSG00000038351.8|small G protein signaling modulator 2
mm10_v2_chrX_+_134601271_134601286	0.0980635	Rfx3_Rfx1_Rfx4	ENSMUST00000050331.6|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000059297.5|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2
mm10_v2_chr19_-_28967794_28967852	0.0962525	Rfx3_Rfx1_Rfx4	ENSMUST00000162110.1|4430402I18Rik|ENSMUSG00000064202.9|RIKEN cDNA 4430402I18 gene
mm10_v2_chr7_-_140882274_140882330	0.0946656	Rfx3_Rfx1_Rfx4	ENSMUST00000026559.7|Sirt3|ENSMUSG00000025486.10|sirtuin 3
mm10_v2_chr3_+_98382438_98382520	0.0943162	Rfx3_Rfx1_Rfx4	ENSMUST00000056096.8|Zfp697|ENSMUSG00000050064.8|zinc finger protein 697
mm10_v2_chr5_-_87092546_87092563	0.0940289	Rfx3_Rfx1_Rfx4	ENSMUST00000132667.1|Ugt2b36|ENSMUSG00000070704.4|UDP glucuronosyltransferase 2 family, polypeptide B36 	ENSMUST00000145617.1|Ugt2b36|ENSMUSG00000070704.4|UDP glucuronosyltransferase 2 family, polypeptide B36 	ENSMUST00000094649.4|Ugt2b36|ENSMUSG00000070704.4|UDP glucuronosyltransferase 2 family, polypeptide B36
mm10_v2_chr12_+_113140198_113140257	0.0932883	Rfx3_Rfx1_Rfx4	ENSMUST00000084882.4|Crip2|ENSMUSG00000006356.6|cysteine rich protein 2
mm10_v2_chr16_+_43889800_43889820	0.0928252	Rfx3_Rfx1_Rfx4	ENSMUST00000132859.1|2610015P09Rik|ENSMUSG00000022701.11|RIKEN cDNA 2610015P09 gene
mm10_v2_chr2_-_91444622_91444726	0.0922474	Rfx3_Rfx1_Rfx4	ENSMUST00000064652.7|1110051M20Rik|ENSMUSG00000040591.12|RIKEN cDNA 1110051M20 gene 	ENSMUST00000102594.4|1110051M20Rik|ENSMUSG00000040591.12|RIKEN cDNA 1110051M20 gene 	ENSMUST00000094835.2|1110051M20Rik|ENSMUSG00000040591.12|RIKEN cDNA 1110051M20 gene
mm10_v2_chr12_+_11265867_11265886	0.091514	Rfx3_Rfx1_Rfx4	ENSMUST00000020931.5|Smc6|ENSMUSG00000020608.6|structural maintenance of chromosomes 6
mm10_v2_chr17_+_78937124_78937183	0.0909873	Rfx3_Rfx1_Rfx4	ENSMUST00000024887.4|Ndufaf7|ENSMUSG00000024082.4|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7
mm10_v2_chrX_+_56894372_56894372	0.0907713	Rfx3_Rfx1_Rfx4	ENSMUST00000136396.1|Gpr112|ENSMUSG00000053852.5|G protein-coupled receptor 112
mm10_v2_chr9_-_77399308_77399418	0.0905349	Rfx3_Rfx1_Rfx4	ENSMUST00000183878.1|RP23-264N13.2|ENSMUSG00000099170.1|RP23-264N13.2
mm10_v2_chr8_+_66386292_66386308	0.0901609	Rfx3_Rfx1_Rfx4	ENSMUST00000039540.5|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1 	ENSMUST00000110253.2|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1
mm10_v2_chr4_+_62408770_62408865	0.0890255	Rfx3_Rfx1_Rfx4	ENSMUST00000084524.3|Prpf4|ENSMUSG00000066148.3|PRP4 pre-mRNA processing factor 4 homolog (yeast)
mm10_v2_chr5_+_34761734_34761780	0.0888661	Rfx3_Rfx1_Rfx4	ENSMUST00000080036.2|Htt|ENSMUSG00000029104.9|huntingtin
mm10_v2_chr4_+_86930691_86930713	0.0888248	Rfx3_Rfx1_Rfx4	ENSMUST00000164590.1|Acer2|ENSMUSG00000091609.1|alkaline ceramidase 2
mm10_v2_chr11_+_72689997_72690015	0.0883421	Rfx3_Rfx1_Rfx4	ENSMUST00000155998.1|Ankfy1|ENSMUSG00000020790.8|ankyrin repeat and FYVE domain containing 1
mm10_v2_chr2_+_80315461_80315511	0.0870476	Rfx3_Rfx1_Rfx4	ENSMUST00000028392.7|Dnajc10|ENSMUSG00000027006.7|DnaJ (Hsp40) homolog, subfamily C, member 10
mm10_v2_chr16_+_32673144_32673199	0.0858135	Rfx3_Rfx1_Rfx4	ENSMUST00000115122.2|Tnk2|ENSMUSG00000022791.10|tyrosine kinase, non-receptor, 2 	ENSMUST00000115120.1|Tnk2|ENSMUSG00000022791.10|tyrosine kinase, non-receptor, 2 	ENSMUST00000131238.1|Tnk2|ENSMUSG00000022791.10|tyrosine kinase, non-receptor, 2 	ENSMUST00000115121.2|Tnk2|ENSMUSG00000022791.10|tyrosine kinase, non-receptor, 2 	ENSMUST00000152361.1|Tnk2|ENSMUSG00000022791.10|tyrosine kinase, non-receptor, 2
mm10_v2_chr11_-_76468396_76468473	0.0850262	Rfx3_Rfx1_Rfx4	ENSMUST00000065028.7|Abr|ENSMUSG00000017631.12|active BCR-related gene
mm10_v2_chr5_-_45856496_45856552	0.0849894	Rfx3_Rfx1_Rfx4	ENSMUST00000087164.3|Lcorl|ENSMUSG00000015882.11|ligand dependent nuclear receptor corepressor-like 	ENSMUST00000121573.1|Lcorl|ENSMUSG00000015882.11|ligand dependent nuclear receptor corepressor-like
mm10_v2_chr3_-_127225917_127225959	0.0846857	Rfx3_Rfx1_Rfx4	ENSMUST00000182064.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain 	ENSMUST00000182662.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr10_-_79746553_79746586	0.0825905	Rfx3_Rfx1_Rfx4	ENSMUST00000020580.6|Polrmt|ENSMUSG00000020329.6|polymerase (RNA) mitochondrial (DNA directed) 	ENSMUST00000159016.1|Polrmt|ENSMUSG00000020329.6|polymerase (RNA) mitochondrial (DNA directed)
mm10_v2_chr1_+_21349598_21349641	0.0824604	Rfx3_Rfx1_Rfx4	ENSMUST00000088407.3|Khdc1a|ENSMUSG00000067750.3|KH domain containing 1A
mm10_v2_chr2_-_151744142_151744205	0.0823617	Rfx3_Rfx1_Rfx4	ENSMUST00000109869.1|Psmf1|ENSMUSG00000032869.9|proteasome (prosome, macropain) inhibitor subunit 1
mm10_v2_chr3_-_89213840_89213923	0.0821222	Rfx3_Rfx1_Rfx4	ENSMUST00000173477.1|Mtx1|ENSMUSG00000064068.7|metaxin 1 	ENSMUST00000119222.1|Mtx1|ENSMUSG00000064068.7|metaxin 1
mm10_v2_chr4_+_123904907_123904916	0.0818945	Rfx3_Rfx1_Rfx4	ENSMUST00000106202.3|Mycbp|ENSMUSG00000028647.7|c-myc binding protein
mm10_v2_chr19_+_8840519_8840549	0.0817639	Rfx3_Rfx1_Rfx4	ENSMUST00000086058.6|Bscl2|ENSMUSG00000071657.6|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm10_v2_chr2_+_153161303_153161339	0.0809032	Rfx3_Rfx1_Rfx4	ENSMUST00000089027.2|Tm9sf4|ENSMUSG00000068040.4|transmembrane 9 superfamily protein member 4
mm10_v2_chr7_+_80246529_80246579	0.0807809	Rfx3_Rfx1_Rfx4	ENSMUST00000107381.1|Ttll13|ENSMUSG00000045467.7|tubulin tyrosine ligase-like family, member 13
mm10_v2_chr8_+_83666827_83666882	0.0797789	Rfx3_Rfx1_Rfx4	ENSMUST00000019608.5|Ptger1|ENSMUSG00000019464.5|prostaglandin E receptor 1 (subtype EP1)
mm10_v2_chr2_+_167932327_167932379	0.0791121	Rfx3_Rfx1_Rfx4	ENSMUST00000029053.7|Ptpn1|ENSMUSG00000027540.7|protein tyrosine phosphatase, non-receptor type 1
mm10_v2_chr4_+_128654686_128654738	0.0780454	Rfx3_Rfx1_Rfx4	ENSMUST00000030588.6|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila) 	ENSMUST00000136377.1|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila)
mm10_v2_chr8_+_123332676_123332740	0.0779247	Rfx3_Rfx1_Rfx4	ENSMUST00000010298.6|Spire2|ENSMUSG00000010154.6|spire homolog 2 (Drosophila)
mm10_v2_chr8_-_92356103_92356120	0.0776873	Rfx3_Rfx1_Rfx4	ENSMUST00000034183.3|4933436C20Rik|ENSMUSG00000031736.4|RIKEN cDNA 4933436C20 gene
mm10_v2_chr2_+_119972699_119972746	0.0776143	Rfx3_Rfx1_Rfx4	ENSMUST00000066058.7|Mapkbp1|ENSMUSG00000033902.11|mitogen-activated protein kinase binding protein 1
mm10_v2_chr16_-_4964168_4964237	0.0771432	Rfx3_Rfx1_Rfx4	ENSMUST00000023157.4|Anks3|ENSMUSG00000022515.5|ankyrin repeat and sterile alpha motif domain containing 3
mm10_v2_chr6_+_55203381_55203459	0.0769266	Rfx3_Rfx1_Rfx4	ENSMUST00000053094.7|Fam188b|ENSMUSG00000038022.9|family with sequence similarity 188, member B
mm10_v2_chr2_+_116900152_116900216	0.0767236	Rfx3_Rfx1_Rfx4	ENSMUST00000126467.1|D330050G23Rik|ENSMUSG00000085316.1|RIKEN cDNA D330050G23 gene 	ENSMUST00000128305.1|D330050G23Rik|ENSMUSG00000085316.1|RIKEN cDNA D330050G23 gene 	ENSMUST00000155323.1|D330050G23Rik|ENSMUSG00000085316.1|RIKEN cDNA D330050G23 gene
mm10_v2_chr3_-_101287897_101287957	0.0767021	Rfx3_Rfx1_Rfx4	ENSMUST00000029456.4|Cd2|ENSMUSG00000027863.8|CD2 antigen
mm10_v2_chr17_+_34837172_34837248	0.0765685	Rfx3_Rfx1_Rfx4	ENSMUST00000173995.1|Dxo|ENSMUSG00000040482.9|decapping exoribonuclease
mm10_v2_chr19_-_59943647_59943678	0.0752487	Rfx3_Rfx1_Rfx4	ENSMUST00000171986.1|Rab11fip2|ENSMUSG00000040022.8|RAB11 family interacting protein 2 (class I)
mm10_v2_chr9_-_67559703_67559703	0.0749938	Rfx3_Rfx1_Rfx4	ENSMUST00000040025.7|Tln2|ENSMUSG00000052698.8|talin 2
mm10_v2_chr1_-_92902883_92902921	0.074513	Rfx3_Rfx1_Rfx4	ENSMUST00000160548.1|Ankmy1|ENSMUSG00000034212.7|ankyrin repeat and MYND domain containing 1 	ENSMUST00000112998.1|Ankmy1|ENSMUSG00000034212.7|ankyrin repeat and MYND domain containing 1
mm10_v2_chr1_+_178405881_178406020	0.0742537	Rfx3_Rfx1_Rfx4	ENSMUST00000027775.7|Efcab2|ENSMUSG00000026495.7|EF-hand calcium binding domain 2
mm10_v2_chr11_+_46235460_46235531	0.0741603	Rfx3_Rfx1_Rfx4	ENSMUST00000060185.2|Fndc9|ENSMUSG00000048721.2|fibronectin type III domain containing 9
mm10_v2_chr3_+_99885383_99885419	0.0732065	Rfx3_Rfx1_Rfx4	ENSMUST00000164539.1|Spag17|ENSMUSG00000027867.10|sperm associated antigen 17
mm10_v2_chr14_-_73049107_73049120	0.0723642	Rfx3_Rfx1_Rfx4	ENSMUST00000044664.4|Cysltr2|ENSMUSG00000033470.5|cysteinyl leukotriene receptor 2 	ENSMUST00000169168.1|Cysltr2|ENSMUSG00000033470.5|cysteinyl leukotriene receptor 2
mm10_v2_chr17_+_24549950_24550062	0.0706961	Rfx3_Rfx1_Rfx4	ENSMUST00000035565.3|Pkd1|ENSMUSG00000032855.5|polycystic kidney disease 1 homolog
mm10_v2_chr12_-_32061221_32061301	0.0698468	Rfx3_Rfx1_Rfx4	ENSMUST00000003079.5|Prkar2b|ENSMUSG00000002997.9|protein kinase, cAMP dependent regulatory, type II beta 	ENSMUST00000036497.9|Prkar2b|ENSMUSG00000002997.9|protein kinase, cAMP dependent regulatory, type II beta
mm10_v2_chr7_+_127091426_127091450	0.069649	Rfx3_Rfx1_Rfx4	ENSMUST00000056288.5|AI467606|ENSMUSG00000045165.5|expressed sequence AI467606
mm10_v2_chr18_-_61176994_61177057	0.0686964	Rfx3_Rfx1_Rfx4	ENSMUST00000091884.4|Hmgxb3|ENSMUSG00000024622.7|HMG box domain containing 3
mm10_v2_chr14_+_30951486_30951510	0.0673662	Rfx3_Rfx1_Rfx4	ENSMUST00000050171.8|Nek4|ENSMUSG00000021918.9|NIMA (never in mitosis gene a)-related expressed kinase 4
mm10_v2_chr15_-_78174090_78174109	0.0668405	Rfx3_Rfx1_Rfx4	ENSMUST00000016781.6|Ift27|ENSMUSG00000016637.6|intraflagellar transport 27
mm10_v2_chr7_+_101321079_101321134	0.0666942	Rfx3_Rfx1_Rfx4	ENSMUST00000032927.7|Stard10|ENSMUSG00000030688.8|START domain containing 10
mm10_v2_chr15_+_102445367_102445403	0.0663653	Rfx3_Rfx1_Rfx4	ENSMUST00000023809.4|Amhr2|ENSMUSG00000023047.4|anti-Mullerian hormone type 2 receptor
mm10_v2_chr1_+_20951666_20951717	0.0657499	Rfx3_Rfx1_Rfx4	ENSMUST00000038447.4|Efhc1|ENSMUSG00000041809.4|EF-hand domain (C-terminal) containing 1
mm10_v2_chr3_+_98382538_98382553	0.0648497	Rfx3_Rfx1_Rfx4	ENSMUST00000178372.1|Zfp697|ENSMUSG00000050064.8|zinc finger protein 697
mm10_v2_chr8_-_83458386_83458397	0.0647755	Rfx3_Rfx1_Rfx4	ENSMUST00000081506.3|Scoc|ENSMUSG00000063253.4|short coiled-coil protein
mm10_v2_chr9_-_50727921_50728008	0.0641103	Rfx3_Rfx1_Rfx4	ENSMUST00000118707.1|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1 	ENSMUST00000034566.8|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1
mm10_v2_chr2_+_119288725_119288771	0.0639332	Rfx3_Rfx1_Rfx4	ENSMUST00000037280.4|Vps18|ENSMUSG00000034216.6|vacuolar protein sorting 18 (yeast)
mm10_v2_chr1_-_164307443_164307503	0.0635895	Rfx3_Rfx1_Rfx4	ENSMUST00000027866.4|Blzf1|ENSMUSG00000026577.7|basic leucine zipper nuclear factor 1 	ENSMUST00000120447.1|Blzf1|ENSMUSG00000026577.7|basic leucine zipper nuclear factor 1 	ENSMUST00000086032.3|Blzf1|ENSMUSG00000026577.7|basic leucine zipper nuclear factor 1
mm10_v2_chr9_+_99575776_99575829	0.0620242	Rfx3_Rfx1_Rfx4	ENSMUST00000066650.5|Dbr1|ENSMUSG00000032469.6|debranching enzyme homolog 1 (S. cerevisiae) 	ENSMUST00000148987.1|Dbr1|ENSMUSG00000032469.6|debranching enzyme homolog 1 (S. cerevisiae)
mm10_v2_chr11_-_78536235_78536332	0.0619222	Rfx3_Rfx1_Rfx4	ENSMUST00000017759.2|Tnfaip1|ENSMUSG00000017615.6|tumor necrosis factor, alpha-induced protein 1 (endothelial) 	ENSMUST00000108277.2|Tnfaip1|ENSMUSG00000017615.6|tumor necrosis factor, alpha-induced protein 1 (endothelial)
mm10_v2_chr13_+_97137937_97138040	0.0609705	Rfx3_Rfx1_Rfx4	ENSMUST00000042084.6|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000160139.1|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000161639.1|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000161913.1|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000161825.1|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000161929.1|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000022170.7|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2
mm10_v2_chr8_-_25597459_25597517	0.0606632	Rfx3_Rfx1_Rfx4	ENSMUST00000079160.6|Letm2|ENSMUSG00000037363.8|leucine zipper-EF-hand containing transmembrane protein 2
mm10_v2_chr3_+_37312514_37312575	0.0587573	Rfx3_Rfx1_Rfx4	ENSMUST00000057975.7|Bbs12|ENSMUSG00000051444.9|Bardet-Biedl syndrome 12 (human) 	ENSMUST00000108121.3|Bbs12|ENSMUSG00000051444.9|Bardet-Biedl syndrome 12 (human)
mm10_v2_chr2_+_118663235_118663309	0.0586958	Rfx3_Rfx1_Rfx4	ENSMUST00000099557.3|Pak6|ENSMUSG00000074923.4|p21 protein (Cdc42/Rac)-activated kinase 6
mm10_v2_chr3_-_116508071_116508208	0.0585787	Rfx3_Rfx1_Rfx4	ENSMUST00000000348.8|Rtca|ENSMUSG00000000339.8|RNA 3'-terminal phosphate cyclase
mm10_v2_chr16_-_90810365_90810429	0.0577582	Rfx3_Rfx1_Rfx4	ENSMUST00000140920.1|Urb1|ENSMUSG00000039929.8|URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
mm10_v2_chr5_+_122372451_122372513	0.0576831	Rfx3_Rfx1_Rfx4	ENSMUST00000031420.4|Gpn3|ENSMUSG00000029464.4|GPN-loop GTPase 3
mm10_v2_chr3_-_105960099_105960099	0.0559968	Rfx3_Rfx1_Rfx4	ENSMUST00000118209.1|Atp5f1|ENSMUSG00000000563.11|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1
mm10_v2_chr9_-_50728067_50728129	0.0557181	Rfx3_Rfx1_Rfx4	ENSMUST00000117646.1|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1
mm10_v2_chr17_-_45474839_45474938	0.0557099	Rfx3_Rfx1_Rfx4	ENSMUST00000024731.8|Spats1|ENSMUSG00000023935.9|spermatogenesis associated, serine-rich 1
mm10_v2_chr4_+_126058557_126058613	0.054799	Rfx3_Rfx1_Rfx4	ENSMUST00000035497.4|Oscp1|ENSMUSG00000042616.7|organic solute carrier partner 1
mm10_v2_chr19_-_60581013_60581025	0.0547454	Rfx3_Rfx1_Rfx4	ENSMUST00000111460.3|Cacul1|ENSMUSG00000033417.9|CDK2 associated, cullin domain 1 	ENSMUST00000081790.7|Cacul1|ENSMUSG00000033417.9|CDK2 associated, cullin domain 1 	ENSMUST00000166712.1|Cacul1|ENSMUSG00000033417.9|CDK2 associated, cullin domain 1
mm10_v2_chr17_-_53463315_53463340	0.05346	Rfx3_Rfx1_Rfx4	ENSMUST00000024725.4|Efhb|ENSMUSG00000023931.4|EF hand domain family, member B
mm10_v2_chr5_+_24586721_24586794	0.0534165	Rfx3_Rfx1_Rfx4	ENSMUST00000121863.1|Chpf2|ENSMUSG00000038181.10|chondroitin polymerizing factor 2 	ENSMUST00000088295.4|Chpf2|ENSMUSG00000038181.10|chondroitin polymerizing factor 2
mm10_v2_chr5_-_135778340_135778391	0.0532069	Rfx3_Rfx1_Rfx4	ENSMUST00000178796.1|Styxl1|ENSMUSG00000019178.11|serine/threonine/tyrosine interacting-like 1 	ENSMUST00000178515.1|Styxl1|ENSMUSG00000019178.11|serine/threonine/tyrosine interacting-like 1 	ENSMUST00000111164.2|Styxl1|ENSMUSG00000019178.11|serine/threonine/tyrosine interacting-like 1
mm10_v2_chr5_+_136908130_136908174	0.0528136	Rfx3_Rfx1_Rfx4	ENSMUST00000008131.8|Rabl5|ENSMUSG00000007987.8|RAB, member of RAS oncogene family-like 5
mm10_v2_chr19_+_43689672_43689695	0.052416	Rfx3_Rfx1_Rfx4	ENSMUST00000081079.5|Entpd7|ENSMUSG00000025192.7|ectonucleoside triphosphate diphosphohydrolase 7
mm10_v2_chr8_-_71381907_71381977	0.0510716	Rfx3_Rfx1_Rfx4	ENSMUST00000002466.8|Nr2f6|ENSMUSG00000002393.8|nuclear receptor subfamily 2, group F, member 6
mm10_v2_chr5_-_23844085_23844161	0.0509118	Rfx3_Rfx1_Rfx4	ENSMUST00000030851.6|Tomm7|ENSMUSG00000028998.6|translocase of outer mitochondrial membrane 7 homolog (yeast)
mm10_v2_chr13_-_49309217_49309257	0.0502281	Rfx3_Rfx1_Rfx4	ENSMUST00000110087.2|Fgd3|ENSMUSG00000037946.5|FYVE, RhoGEF and PH domain containing 3
mm10_v2_chr10_-_13868779_13868874	0.0500247	Rfx3_Rfx1_Rfx4	ENSMUST00000105534.3|Aig1|ENSMUSG00000019806.7|androgen-induced 1
mm10_v2_chr1_+_152750527_152750553	0.0499875	Rfx3_Rfx1_Rfx4	ENSMUST00000068875.4|Apobec4|ENSMUSG00000055547.4|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)
mm10_v2_chr3_+_122245625_122245722	0.0499094	Rfx3_Rfx1_Rfx4	ENSMUST00000178826.1|Gclm|ENSMUSG00000028124.9|glutamate-cysteine ligase, modifier subunit
mm10_v2_chr6_-_128424883_128424935	0.0498516	Rfx3_Rfx1_Rfx4	ENSMUST00000001559.8|Itfg2|ENSMUSG00000001518.10|integrin alpha FG-GAP repeat containing 2
mm10_v2_chr4_-_129600586_129600599	0.0495568	Rfx3_Rfx1_Rfx4	ENSMUST00000135055.1|Eif3i|ENSMUSG00000028798.10|eukaryotic translation initiation factor 3, subunit I
mm10_v2_chr17_-_31855782_31855802	0.0492546	Rfx3_Rfx1_Rfx4	ENSMUST00000024839.4|Sik1|ENSMUSG00000024042.6|salt inducible kinase 1
mm10_v2_chrX_-_133898399_133898429	0.0490439	Rfx3_Rfx1_Rfx4	ENSMUST00000087557.5|Tspan6|ENSMUSG00000067377.6|tetraspanin 6
mm10_v2_chr16_+_32419696_32419753	0.0485117	Rfx3_Rfx1_Rfx4	ENSMUST00000014220.8|Tctex1d2|ENSMUSG00000014075.9|Tctex1 domain containing 2 	ENSMUST00000080316.7|Tctex1d2|ENSMUSG00000014075.9|Tctex1 domain containing 2
mm10_v2_chr19_-_6942406_6942450	0.0481551	Rfx3_Rfx1_Rfx4	ENSMUST00000099782.3|Gpr137|ENSMUSG00000024958.6|G protein-coupled receptor 137
mm10_v2_chr12_+_72536342_72536396	0.0481061	Rfx3_Rfx1_Rfx4	ENSMUST00000044352.6|Pcnxl4|ENSMUSG00000034501.6|pecanex-like 4 (Drosophila)
mm10_v2_chr7_-_43313063_43313116	0.0475736	Rfx3_Rfx1_Rfx4	ENSMUST00000135130.1|Zfp715|ENSMUSG00000012640.10|zinc finger protein 715 	ENSMUST00000139061.1|Zfp715|ENSMUSG00000012640.10|zinc finger protein 715
mm10_v2_chr4_+_152338619_152338709	0.0470947	Rfx3_Rfx1_Rfx4	ENSMUST00000030775.5|Chd5|ENSMUSG00000005045.10|chromodomain helicase DNA binding protein 5 	ENSMUST00000164662.1|Chd5|ENSMUSG00000005045.10|chromodomain helicase DNA binding protein 5
mm10_v2_chr3_-_126998408_126998463	0.0469938	Rfx3_Rfx1_Rfx4	ENSMUST00000182764.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain 	ENSMUST00000044443.8|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr15_-_98762992_98763190	0.0467323	Rfx3_Rfx1_Rfx4	ENSMUST00000156572.1|Arf3|ENSMUSG00000051853.8|ADP-ribosylation factor 3
mm10_v2_chr19_+_5041337_5041416	0.0462996	Rfx3_Rfx1_Rfx4	ENSMUST00000116567.2|Brms1|ENSMUSG00000080268.3|breast cancer metastasis-suppressor 1
mm10_v2_chr11_+_90638127_90638207	0.0457866	Rfx3_Rfx1_Rfx4	ENSMUST00000020851.8|Cox11|ENSMUSG00000020544.8|cytochrome c oxidase assembly protein 11
mm10_v2_chr12_+_116047713_116047807	0.0451678	Rfx3_Rfx1_Rfx4	ENSMUST00000073551.5|Zfp386|ENSMUSG00000042063.11|zinc finger protein 386 (Kruppel-like) 	ENSMUST00000183125.1|Zfp386|ENSMUSG00000042063.11|zinc finger protein 386 (Kruppel-like)
mm10_v2_chr11_+_53567361_53567526	0.0443948	Rfx3_Rfx1_Rfx4	ENSMUST00000057330.8|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000120613.2|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000173744.1|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000118353.2|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A
mm10_v2_chr1_-_155417283_155417323	0.0441564	Rfx3_Rfx1_Rfx4	ENSMUST00000027741.5|Xpr1|ENSMUSG00000026469.8|xenotropic and polytropic retrovirus receptor 1
mm10_v2_chr18_+_64887690_64887762	0.0435458	Rfx3_Rfx1_Rfx4	ENSMUST00000163516.1|Nedd4l|ENSMUSG00000024589.9|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm10_v2_chr19_-_10577362_10577407	0.0429737	Rfx3_Rfx1_Rfx4	ENSMUST00000025568.2|Tmem138|ENSMUSG00000024666.5|transmembrane protein 138
mm10_v2_chrX_+_10252361_10252383	0.0429134	Rfx3_Rfx1_Rfx4	ENSMUST00000115528.2|Otc|ENSMUSG00000031173.7|ornithine transcarbamylase
mm10_v2_chr9_-_32928928_32928966	0.0427696	Rfx3_Rfx1_Rfx4	ENSMUST00000185169.1|RP24-308I2.1|ENSMUSG00000099025.1|RP24-308I2.1
mm10_v2_chr17_-_34850162_34850210	0.0425703	Rfx3_Rfx1_Rfx4	ENSMUST00000046022.9|Skiv2l|ENSMUSG00000040356.10|superkiller viralicidic activity 2-like (S. cerevisiae)
mm10_v2_chrX_-_157568983_157568991	0.0422987	Rfx3_Rfx1_Rfx4	ENSMUST00000065806.4|Yy2|ENSMUSG00000091736.2|Yy2 transcription factor
mm10_v2_chr15_-_84065329_84065364	0.0420125	Rfx3_Rfx1_Rfx4	ENSMUST00000156187.1|Efcab6|ENSMUSG00000022441.11|EF-hand calcium binding domain 6
mm10_v2_chr2_+_85037212_85037302	0.0419288	Rfx3_Rfx1_Rfx4	ENSMUST00000077798.6|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1
mm10_v2_chr8_-_45975224_45975281	0.0418223	Rfx3_Rfx1_Rfx4	ENSMUST00000095323.1|1700029J07Rik|ENSMUSG00000071103.3|RIKEN cDNA 1700029J07 gene 	ENSMUST00000098786.2|1700029J07Rik|ENSMUSG00000071103.3|RIKEN cDNA 1700029J07 gene
mm10_v2_chr11_-_77725281_77725294	0.0418016	Rfx3_Rfx1_Rfx4	ENSMUST00000078623.4|Cryba1|ENSMUSG00000000724.10|crystallin, beta A1
mm10_v2_chr10_-_89621253_89621275	0.0408603	Rfx3_Rfx1_Rfx4	ENSMUST00000020102.7|Slc17a8|ENSMUSG00000019935.10|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8
mm10_v2_chr2_+_136532266_136532287	0.0406471	Rfx3_Rfx1_Rfx4	ENSMUST00000121717.1|Ankef1|ENSMUSG00000074771.4|ankyrin repeat and EF-hand domain containing 1
mm10_v2_chr11_+_70166623_70166667	0.0401086	Rfx3_Rfx1_Rfx4	ENSMUST00000102571.3|Clec10a|ENSMUSG00000000318.10|C-type lectin domain family 10, member A 	ENSMUST00000178945.1|Clec10a|ENSMUSG00000000318.10|C-type lectin domain family 10, member A 	ENSMUST00000000327.6|Clec10a|ENSMUSG00000000318.10|C-type lectin domain family 10, member A
mm10_v2_chr13_-_119755882_119755882	0.0400641	Rfx3_Rfx1_Rfx4	ENSMUST00000178142.1|Nim1|ENSMUSG00000095930.1|serine/threonine-protein kinase NIM1
mm10_v2_chr2_-_167060417_167060430	0.0395174	Rfx3_Rfx1_Rfx4	ENSMUST00000155281.1|Znfx1|ENSMUSG00000039501.8|zinc finger, NFX1-type containing 1
mm10_v2_chr13_+_112987802_112987838	0.0391876	Rfx3_Rfx1_Rfx4	ENSMUST00000038404.4|Ccno|ENSMUSG00000042417.4|cyclin O
mm10_v2_chr15_-_76126538_76126556	0.0389214	Rfx3_Rfx1_Rfx4	ENSMUST00000054022.5|BC024139|ENSMUSG00000044361.9|cDNA sequence BC024139 	ENSMUST00000089654.3|BC024139|ENSMUSG00000044361.9|cDNA sequence BC024139
mm10_v2_chr6_-_115838412_115838412	0.0388528	Rfx3_Rfx1_Rfx4	ENSMUST00000032468.5|Efcab12|ENSMUSG00000030321.9|EF-hand calcium binding domain 12 	ENSMUST00000184428.1|Efcab12|ENSMUSG00000030321.9|EF-hand calcium binding domain 12
mm10_v2_chr1_-_171287931_171287991	0.0386581	Rfx3_Rfx1_Rfx4	ENSMUST00000111306.3|Usp21|ENSMUSG00000053483.7|ubiquitin specific peptidase 21 	ENSMUST00000065941.5|Usp21|ENSMUSG00000053483.7|ubiquitin specific peptidase 21
mm10_v2_chr17_+_35016576_35016638	0.0381814	Rfx3_Rfx1_Rfx4	ENSMUST00000007245.1|Vwa7|ENSMUSG00000007030.2|von Willebrand factor A domain containing 7 	ENSMUST00000172499.1|Vwa7|ENSMUSG00000007030.2|von Willebrand factor A domain containing 7
mm10_v2_chrX_-_134600976_134601125	0.0379641	Rfx3_Rfx1_Rfx4	ENSMUST00000033621.6|Gla|ENSMUSG00000031266.6|galactosidase, alpha
mm10_v2_chr13_+_24802020_24802020	0.0374849	Rfx3_Rfx1_Rfx4	ENSMUST00000155575.1|BC005537|ENSMUSG00000019132.4|cDNA sequence BC005537
mm10_v2_chr4_+_155086577_155086610	0.037155	Rfx3_Rfx1_Rfx4	ENSMUST00000030915.4|Morn1|ENSMUSG00000029049.8|MORN repeat containing 1 	ENSMUST00000155775.1|Morn1|ENSMUSG00000029049.8|MORN repeat containing 1 	ENSMUST00000127457.1|Morn1|ENSMUSG00000029049.8|MORN repeat containing 1
mm10_v2_chr11_+_97801917_97801998	0.0370886	Rfx3_Rfx1_Rfx4	ENSMUST00000127033.2|Lasp1|ENSMUSG00000038366.9|LIM and SH3 protein 1
mm10_v2_chr16_-_91728599_91728637	0.0354065	Rfx3_Rfx1_Rfx4	ENSMUST00000122254.1|Cryzl1|ENSMUSG00000058240.7|crystallin, zeta (quinone reductase)-like 1
mm10_v2_chr11_+_120467635_120467719	0.0347953	Rfx3_Rfx1_Rfx4	ENSMUST00000140862.1|Hgs|ENSMUSG00000025793.9|HGF-regulated tyrosine kinase substrate 	ENSMUST00000106205.1|Hgs|ENSMUSG00000025793.9|HGF-regulated tyrosine kinase substrate 	ENSMUST00000106203.1|Hgs|ENSMUSG00000025793.9|HGF-regulated tyrosine kinase substrate 	ENSMUST00000026900.7|Hgs|ENSMUSG00000025793.9|HGF-regulated tyrosine kinase substrate
mm10_v2_chr13_+_63015167_63015167	0.0341439	Rfx3_Rfx1_Rfx4	ENSMUST00000021911.8|2010111I01Rik|ENSMUSG00000021458.10|RIKEN cDNA 2010111I01 gene
mm10_v2_chr12_+_8313425_8313454	0.0341103	Rfx3_Rfx1_Rfx4	ENSMUST00000020927.8|Hs1bp3|ENSMUSG00000020605.8|HCLS1 binding protein 3
mm10_v2_chr17_+_56584973_56585059	0.0335292	Rfx3_Rfx1_Rfx4	ENSMUST00000182533.1|Safb|ENSMUSG00000071054.6|scaffold attachment factor B 	ENSMUST00000182800.1|Safb|ENSMUSG00000071054.6|scaffold attachment factor B 	ENSMUST00000095224.4|Safb|ENSMUSG00000071054.6|scaffold attachment factor B
mm10_v2_chr17_-_38082999_38082999	0.0335082	Rfx3_Rfx1_Rfx4	ENSMUST00000059560.4|Olfr131|ENSMUSG00000043312.5|olfactory receptor 131
mm10_v2_chr6_-_29609811_29609887	0.0333412	Rfx3_Rfx1_Rfx4	ENSMUST00000012679.8|Tnpo3|ENSMUSG00000012535.8|transportin 3
mm10_v2_chr8_+_47713266_47713266	0.0332024	Rfx3_Rfx1_Rfx4	ENSMUST00000180928.1|E030037K01Rik|ENSMUSG00000097706.1|RIKEN cDNA E030037K01 gene
mm10_v2_chr4_+_123904832_123904851	0.0328916	Rfx3_Rfx1_Rfx4	ENSMUST00000030400.7|Mycbp|ENSMUSG00000028647.7|c-myc binding protein
mm10_v2_chr17_-_56117265_56117298	0.0324179	Rfx3_Rfx1_Rfx4	ENSMUST00000113072.2|Plin5|ENSMUSG00000011305.5|perilipin 5
mm10_v2_chr7_-_109493627_109493738	0.0320603	Rfx3_Rfx1_Rfx4	ENSMUST00000106739.1|Trim66|ENSMUSG00000031026.8|tripartite motif-containing 66
mm10_v2_chr7_-_44748306_44748391	0.0319729	Rfx3_Rfx1_Rfx4	ENSMUST00000118162.1|Zfp473|ENSMUSG00000048012.12|zinc finger protein 473 	ENSMUST00000140599.2|Zfp473|ENSMUSG00000048012.12|zinc finger protein 473 	ENSMUST00000120798.1|Zfp473|ENSMUSG00000048012.12|zinc finger protein 473
mm10_v2_chr6_-_29609607_29609642	0.0310884	Rfx3_Rfx1_Rfx4	ENSMUST00000115251.1|Tnpo3|ENSMUSG00000012535.8|transportin 3
mm10_v2_chr12_-_86726439_86726475	0.0307468	Rfx3_Rfx1_Rfx4	ENSMUST00000021682.8|Angel1|ENSMUSG00000021257.8|angel homolog 1 (Drosophila)
mm10_v2_chr19_-_4125837_4125863	0.0297552	Rfx3_Rfx1_Rfx4	ENSMUST00000121402.1|Aip|ENSMUSG00000024847.8|aryl-hydrocarbon receptor-interacting protein 	ENSMUST00000117831.1|Aip|ENSMUSG00000024847.8|aryl-hydrocarbon receptor-interacting protein
mm10_v2_chr8_+_33731867_33731946	0.0280198	Rfx3_Rfx1_Rfx4	ENSMUST00000170705.1|Gtf2e2|ENSMUSG00000031585.7|general transcription factor II E, polypeptide 2 (beta subunit)
mm10_v2_chr7_-_102116705_102116719	0.0272073	Rfx3_Rfx1_Rfx4	ENSMUST00000084830.1|Chrna10|ENSMUSG00000066279.2|cholinergic receptor, nicotinic, alpha polypeptide 10
mm10_v2_chrX_+_136993147_136993216	0.0270677	Rfx3_Rfx1_Rfx4	ENSMUST00000113067.1|Zcchc18|ENSMUSG00000031428.5|zinc finger, CCHC domain containing 18 	ENSMUST00000101227.2|Zcchc18|ENSMUSG00000031428.5|zinc finger, CCHC domain containing 18
mm10_v2_chr19_-_4906598_4906632	0.0269839	Rfx3_Rfx1_Rfx4	ENSMUST00000053506.6|Bbs1|ENSMUSG00000006464.8|Bardet-Biedl syndrome 1 (human)
mm10_v2_chr4_-_129600642_129600653	0.0269053	Rfx3_Rfx1_Rfx4	ENSMUST00000102593.4|Eif3i|ENSMUSG00000028798.10|eukaryotic translation initiation factor 3, subunit I
mm10_v2_chr8_+_72219726_72219785	0.026783	Rfx3_Rfx1_Rfx4	ENSMUST00000003123.8|Fam32a|ENSMUSG00000003039.8|family with sequence similarity 32, member A
mm10_v2_chr18_+_35598607_35598653	0.0255464	Rfx3_Rfx1_Rfx4	ENSMUST00000041314.8|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115737.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115736.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115735.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2
mm10_v2_chr11_-_120991305_120991339	0.0253814	Rfx3_Rfx1_Rfx4	ENSMUST00000018274.3|Csnk1d|ENSMUSG00000025162.11|casein kinase 1, delta
mm10_v2_chr10_-_81060134_81060204	0.0252662	Rfx3_Rfx1_Rfx4	ENSMUST00000005067.5|Sgta|ENSMUSG00000004937.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
mm10_v2_chr7_+_6172482_6172531	0.0252069	Rfx3_Rfx1_Rfx4	ENSMUST00000108567.1|Zfp444|ENSMUSG00000044876.8|zinc finger protein 444 	ENSMUST00000054680.5|Zfp444|ENSMUSG00000044876.8|zinc finger protein 444 	ENSMUST00000108566.1|Zfp444|ENSMUSG00000044876.8|zinc finger protein 444
mm10_v2_chr1_+_75521521_75521602	0.0249065	Rfx3_Rfx1_Rfx4	ENSMUST00000027414.9|Stk11ip|ENSMUSG00000026213.9|serine/threonine kinase 11 interacting protein 	ENSMUST00000113553.1|Stk11ip|ENSMUSG00000026213.9|serine/threonine kinase 11 interacting protein
mm10_v2_chr4_+_126096623_126096708	0.0246639	Rfx3_Rfx1_Rfx4	ENSMUST00000055575.7|Lsm10|ENSMUSG00000050188.8|U7 snRNP-specific Sm-like protein LSM10 	ENSMUST00000179323.1|Lsm10|ENSMUSG00000050188.8|U7 snRNP-specific Sm-like protein LSM10 	ENSMUST00000151831.1|Lsm10|ENSMUSG00000050188.8|U7 snRNP-specific Sm-like protein LSM10
mm10_v2_chr3_+_156561792_156561869	0.0245258	Rfx3_Rfx1_Rfx4	ENSMUST00000074015.4|Negr1|ENSMUSG00000040037.7|neuronal growth regulator 1
mm10_v2_chr7_-_118705708_118705786	0.0243442	Rfx3_Rfx1_Rfx4	ENSMUST00000038791.8|Gde1|ENSMUSG00000033917.8|glycerophosphodiester phosphodiesterase 1
mm10_v2_chr8_+_45627709_45627803	0.0235501	Rfx3_Rfx1_Rfx4	ENSMUST00000134321.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000135336.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr16_-_17561240_17561254	0.0224683	Rfx3_Rfx1_Rfx4	ENSMUST00000065125.5|4930451C15Rik|ENSMUSG00000022759.7|RIKEN cDNA 4930451C15 gene 	ENSMUST00000100123.3|4930451C15Rik|ENSMUSG00000022759.7|RIKEN cDNA 4930451C15 gene 	ENSMUST00000023442.6|4930451C15Rik|ENSMUSG00000022759.7|RIKEN cDNA 4930451C15 gene
mm10_v2_chr13_+_80886095_80886201	0.0223688	Rfx3_Rfx1_Rfx4	ENSMUST00000161441.1|Arrdc3|ENSMUSG00000074794.3|arrestin domain containing 3
mm10_v2_chr11_+_3895223_3895310	0.0221201	Rfx3_Rfx1_Rfx4	ENSMUST00000055931.4|Dusp18|ENSMUSG00000047205.6|dual specificity phosphatase 18 	ENSMUST00000109996.1|Dusp18|ENSMUSG00000047205.6|dual specificity phosphatase 18
mm10_v2_chr1_+_84839833_84839875	0.0220087	Rfx3_Rfx1_Rfx4	ENSMUST00000097672.3|Fbxo36|ENSMUSG00000073633.3|F-box protein 36
mm10_v2_chr10_+_127063599_127063655	0.0213665	Rfx3_Rfx1_Rfx4	ENSMUST00000120226.1|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4 	ENSMUST00000133115.1|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4
mm10_v2_chr14_-_77874887_77874941	0.0209545	Rfx3_Rfx1_Rfx4	ENSMUST00000022590.3|Dnajc15|ENSMUSG00000022013.3|DnaJ (Hsp40) homolog, subfamily C, member 15
mm10_v2_chr7_+_30563838_30563879	0.0204446	Rfx3_Rfx1_Rfx4	ENSMUST00000163330.1|U2af1l4|ENSMUSG00000078765.4|U2 small nuclear RNA auxiliary factor 1-like 4
mm10_v2_chr16_-_3908639_3908689	0.0201841	Rfx3_Rfx1_Rfx4	ENSMUST00000115859.1|1700037C18Rik|ENSMUSG00000005983.9|RIKEN cDNA 1700037C18 gene
mm10_v2_chr17_-_24696147_24696166	0.0190609	Rfx3_Rfx1_Rfx4	ENSMUST00000046839.8|Gfer|ENSMUSG00000040888.9|growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration)
mm10_v2_chr1_-_171360798_171360798	0.0187138	Rfx3_Rfx1_Rfx4	ENSMUST00000061878.4|Klhdc9|ENSMUSG00000045259.4|kelch domain containing 9
mm10_v2_chr7_+_3303643_3303654	0.0181075	Rfx3_Rfx1_Rfx4	ENSMUST00000172109.1|Prkcg|ENSMUSG00000078816.3|protein kinase C, gamma
mm10_v2_chr1_+_180109192_180109265	0.0177142	Rfx3_Rfx1_Rfx4	ENSMUST00000143176.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha 	ENSMUST00000135056.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha
mm10_v2_chr4_-_135573623_135573643	0.0176147	Rfx3_Rfx1_Rfx4	ENSMUST00000105855.1|Grhl3|ENSMUSG00000037188.7|grainyhead-like 3 (Drosophila)
mm10_v2_chr16_+_94570010_94570052	0.0175843	Rfx3_Rfx1_Rfx4	ENSMUST00000119878.1|Dyrk1a|ENSMUSG00000022897.8|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a
mm10_v2_chr5_+_64812336_64812350	0.0173628	Rfx3_Rfx1_Rfx4	ENSMUST00000166409.1|Klf3|ENSMUSG00000029178.8|Kruppel-like factor 3 (basic)
mm10_v2_chr1_-_87510306_87510373	0.0165706	Rfx3_Rfx1_Rfx4	ENSMUST00000027477.8|Ngef|ENSMUSG00000026259.8|neuronal guanine nucleotide exchange factor
mm10_v2_chr7_+_67222544_67222635	0.0163848	Rfx3_Rfx1_Rfx4	ENSMUST00000058771.5|Lysmd4|ENSMUSG00000043831.5|LysM, putative peptidoglycan-binding, domain containing 4 	ENSMUST00000179106.1|Lysmd4|ENSMUSG00000043831.5|LysM, putative peptidoglycan-binding, domain containing 4
mm10_v2_chr8_+_33732049_33732137	0.0162662	Rfx3_Rfx1_Rfx4	ENSMUST00000167264.1|Gtf2e2|ENSMUSG00000031585.7|general transcription factor II E, polypeptide 2 (beta subunit)
mm10_v2_chr7_+_80246375_80246429	0.0161061	Rfx3_Rfx1_Rfx4	ENSMUST00000058266.6|Ttll13|ENSMUSG00000045467.7|tubulin tyrosine ligase-like family, member 13
mm10_v2_chr10_-_62726086_62726128	0.0159078	Rfx3_Rfx1_Rfx4	ENSMUST00000133371.1|Stox1|ENSMUSG00000036923.6|storkhead box 1
mm10_v2_chr8_+_94984399_94984477	0.0155344	Rfx3_Rfx1_Rfx4	ENSMUST00000093271.6|Gpr56|ENSMUSG00000031785.9|G protein-coupled receptor 56
mm10_v2_chr1_+_179668202_179668268	0.0153277	Rfx3_Rfx1_Rfx4	ENSMUST00000040538.3|Sccpdh|ENSMUSG00000038936.7|saccharopine dehydrogenase (putative)
mm10_v2_chr3_-_144720315_144720336	0.0150668	Rfx3_Rfx1_Rfx4	ENSMUST00000163279.1|Sh3glb1|ENSMUSG00000037062.9|SH3-domain GRB2-like B1 (endophilin)
mm10_v2_chr10_+_13008442_13008519	0.0141451	Rfx3_Rfx1_Rfx4	ENSMUST00000105139.3|Sf3b5|ENSMUSG00000078348.3|splicing factor 3b, subunit 5
mm10_v2_chr9_+_108002501_108002680	0.0130694	Rfx3_Rfx1_Rfx4	ENSMUST00000035214.4|Ip6k1|ENSMUSG00000032594.5|inositol hexaphosphate kinase 1 	ENSMUST00000175874.1|Ip6k1|ENSMUSG00000032594.5|inositol hexaphosphate kinase 1
mm10_v2_chr1_-_128592284_128592307	0.0127062	Rfx3_Rfx1_Rfx4	ENSMUST00000052172.6|Cxcr4|ENSMUSG00000045382.6|chemokine (C-X-C motif) receptor 4 	ENSMUST00000142893.1|Cxcr4|ENSMUSG00000045382.6|chemokine (C-X-C motif) receptor 4
mm10_v2_chr9_+_105395348_105395411	0.0123301	Rfx3_Rfx1_Rfx4	ENSMUST00000035181.3|Aste1|ENSMUSG00000032567.8|asteroid homolog 1 (Drosophila)
mm10_v2_chr17_-_87446854_87446935	0.0120174	Rfx3_Rfx1_Rfx4	ENSMUST00000040440.6|Calm2|ENSMUSG00000036438.6|calmodulin 2
mm10_v2_chr8_-_85555261_85555315	0.0120082	Rfx3_Rfx1_Rfx4	ENSMUST00000034138.5|Dnaja2|ENSMUSG00000031701.5|DnaJ (Hsp40) homolog, subfamily A, member 2
mm10_v2_chr18_+_36348739_36348779	0.0115077	Rfx3_Rfx1_Rfx4	ENSMUST00000152804.2|Cystm1|ENSMUSG00000046727.6|cysteine-rich transmembrane module containing 1
mm10_v2_chr2_+_27009936_27010082	0.010541	Rfx3_Rfx1_Rfx4	ENSMUST00000133807.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1
mm10_v2_chr17_+_35241838_35241870	0.0102575	Rfx3_Rfx1_Rfx4	ENSMUST00000173731.1|Ddx39b|ENSMUSG00000019432.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
mm10_v2_chr18_+_36348653_36348728	0.00952574	Rfx3_Rfx1_Rfx4	ENSMUST00000050584.3|Cystm1|ENSMUSG00000046727.6|cysteine-rich transmembrane module containing 1
mm10_v2_chr2_+_164497518_164497560	0.00942448	Rfx3_Rfx1_Rfx4	ENSMUST00000103101.4|Pigt|ENSMUSG00000017721.9|phosphatidylinositol glycan anchor biosynthesis, class T 	ENSMUST00000117066.1|Pigt|ENSMUSG00000017721.9|phosphatidylinositol glycan anchor biosynthesis, class T
mm10_v2_chr18_+_23803962_23804054	0.00907762	Rfx3_Rfx1_Rfx4	ENSMUST00000025127.3|Mapre2|ENSMUSG00000024277.8|microtubule-associated protein, RP/EB family, member 2
mm10_v2_chr2_-_3332566_3332650	0.00904169	Rfx3_Rfx1_Rfx4	ENSMUST00000062672.6|Rpp38|ENSMUSG00000049950.6|ribonuclease P/MRP 38 subunit
mm10_v2_chr7_-_4532419_4532470	0.00873843	Rfx3_Rfx1_Rfx4	ENSMUST00000094897.4|Dnaaf3|ENSMUSG00000055809.7|dynein, axonemal assembly factor 3
mm10_v2_chr6_-_28261907_28261943	0.00866345	Rfx3_Rfx1_Rfx4	ENSMUST00000115320.1|Zfp800|ENSMUSG00000039841.8|zinc finger protein 800 	ENSMUST00000123098.1|Zfp800|ENSMUSG00000039841.8|zinc finger protein 800 	ENSMUST00000115321.2|Zfp800|ENSMUSG00000039841.8|zinc finger protein 800 	ENSMUST00000155494.1|Zfp800|ENSMUSG00000039841.8|zinc finger protein 800
mm10_v2_chr15_-_33687840_33687883	0.00863518	Rfx3_Rfx1_Rfx4	ENSMUST00000042021.3|Tspyl5|ENSMUSG00000038984.3|testis-specific protein, Y-encoded-like 5
mm10_v2_chr19_+_6942501_6942584	0.00798833	Rfx3_Rfx1_Rfx4	ENSMUST00000113423.3|Bad|ENSMUSG00000024959.7|BCL2-associated agonist of cell death
mm10_v2_chr4_-_133545906_133546011	0.00678738	Rfx3_Rfx1_Rfx4	ENSMUST00000030665.6|Nudc|ENSMUSG00000028851.6|nuclear distribution gene C homolog (Aspergillus)
mm10_v2_chr9_-_59036387_59036460	0.00588575	Rfx3_Rfx1_Rfx4	ENSMUST00000068664.5|Neo1|ENSMUSG00000032340.7|neogenin
mm10_v2_chr1_-_160077918_160077944	0.00583492	Rfx3_Rfx1_Rfx4	ENSMUST00000028061.3|4930562F07Rik|ENSMUSG00000026729.4|RIKEN cDNA 4930562F07 gene
mm10_v2_chr11_-_60777241_60777365	0.00511115	Rfx3_Rfx1_Rfx4	ENSMUST00000120417.1|Top3a|ENSMUSG00000002814.9|topoisomerase (DNA) III alpha 	ENSMUST00000102668.3|Top3a|ENSMUSG00000002814.9|topoisomerase (DNA) III alpha 	ENSMUST00000117743.1|Top3a|ENSMUSG00000002814.9|topoisomerase (DNA) III alpha 	ENSMUST00000130068.1|Top3a|ENSMUSG00000002814.9|topoisomerase (DNA) III alpha 	ENSMUST00000002891.4|Top3a|ENSMUSG00000002814.9|topoisomerase (DNA) III alpha
mm10_v2_chr15_-_101869695_101869712	0.00510112	Rfx3_Rfx1_Rfx4	ENSMUST00000087996.5|Krt77|ENSMUSG00000067594.5|keratin 77
mm10_v2_chr4_-_41314877_41314889	0.00501553	Rfx3_Rfx1_Rfx4	ENSMUST00000030145.8|Dcaf12|ENSMUSG00000028436.8|DDB1 and CUL4 associated factor 12
mm10_v2_chr8_+_33732237_33732339	0.00419202	Rfx3_Rfx1_Rfx4	ENSMUST00000171010.1|Gtf2e2|ENSMUSG00000031585.7|general transcription factor II E, polypeptide 2 (beta subunit)
mm10_v2_chr17_+_43389436_43389497	0.00399622	Rfx3_Rfx1_Rfx4	ENSMUST00000113599.1|Gpr116|ENSMUSG00000056492.5|G protein-coupled receptor 116
mm10_v2_chr18_-_77186257_77186257	0.0031518	Rfx3_Rfx1_Rfx4	ENSMUST00000097520.2|Gm7276|ENSMUSG00000073532.2|predicted gene 7276
mm10_v2_chr3_+_90079540_90079715	0.00263983	Rfx3_Rfx1_Rfx4	ENSMUST00000029549.9|Tpm3|ENSMUSG00000027940.12|tropomyosin 3, gamma 	ENSMUST00000118566.1|Tpm3|ENSMUSG00000027940.12|tropomyosin 3, gamma 	ENSMUST00000119158.1|Tpm3|ENSMUSG00000027940.12|tropomyosin 3, gamma
mm10_v2_chr13_-_24937585_24937691	0.00260998	Rfx3_Rfx1_Rfx4	ENSMUST00000037615.6|Aldh5a1|ENSMUSG00000035936.6|aldhehyde dehydrogenase family 5, subfamily A1
mm10_v2_chr5_+_136919137_136919188	0.00171704	Rfx3_Rfx1_Rfx4	ENSMUST00000181045.1|4933404O12Rik|ENSMUSG00000097908.1|RIKEN cDNA 4933404O12 gene
mm10_v2_chrX_-_102071188_102071204	0.00137677	Rfx3_Rfx1_Rfx4	ENSMUST00000113631.1|Rgag4|ENSMUSG00000049191.6|retrotransposon gag domain containing 4
mm10_v2_chr17_-_36951338_36951425	0.00116474	Rfx3_Rfx1_Rfx4	ENSMUST00000173540.1|Ppp1r11|ENSMUSG00000036398.7|protein phosphatase 1, regulatory (inhibitor) subunit 11
mm10_v2_chrX_+_7884244_7884313	0.00114125	Rfx3_Rfx1_Rfx4	ENSMUST00000115663.3|Slc35a2|ENSMUSG00000031156.11|solute carrier family 35 (UDP-galactose transporter), member A2
mm10_v2_chr1_+_92906959_92907036	0.000561275	Rfx3_Rfx1_Rfx4	ENSMUST00000060913.6|Dusp28|ENSMUSG00000047067.6|dual specificity phosphatase 28
