mm10_v2_chr1_-_65123108_65123214	0.885199	Six3_Six1_Six2	ENSMUST00000050047.3|D630023F18Rik|ENSMUSG00000044816.4|RIKEN cDNA D630023F18 gene 	ENSMUST00000148020.1|D630023F18Rik|ENSMUSG00000044816.4|RIKEN cDNA D630023F18 gene
mm10_v2_chr15_-_82244716_82244755	0.550139	Six3_Six1_Six2	ENSMUST00000089155.4|Cenpm|ENSMUSG00000068101.4|centromere protein M 	ENSMUST00000089157.3|Cenpm|ENSMUSG00000068101.4|centromere protein M
mm10_v2_chr1_+_139454747_139454825	0.536214	Six3_Six1_Six2	ENSMUST00000053364.8|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila) 	ENSMUST00000097554.3|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila)
mm10_v2_chr2_+_31245801_31245900	0.467925	Six3_Six1_Six2	ENSMUST00000000199.7|Ncs1|ENSMUSG00000062661.6|neuronal calcium sensor 1
mm10_v2_chr3_+_94398517_94398538	0.40165	Six3_Six1_Six2	ENSMUST00000050975.3|Lingo4|ENSMUSG00000044505.3|leucine rich repeat and Ig domain containing 4
mm10_v2_chr19_-_44135816_44135881	0.368195	Six3_Six1_Six2	ENSMUST00000026218.5|Cwf19l1|ENSMUSG00000025200.6|CWF19-like 1, cell cycle control (S. pombe)
mm10_v2_chr9_+_106222598_106222629	0.34061	Six3_Six1_Six2	ENSMUST00000062241.9|Tlr9|ENSMUSG00000045322.9|toll-like receptor 9
mm10_v2_chr7_-_126676357_126676383	0.30023	Six3_Six1_Six2	ENSMUST00000106371.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1 	ENSMUST00000106372.3|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1 	ENSMUST00000155419.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1
mm10_v2_chr13_+_94083490_94083511	0.277571	Six3_Six1_Six2	ENSMUST00000156071.1|Lhfpl2|ENSMUSG00000045312.5|lipoma HMGIC fusion partner-like 2
mm10_v2_chr18_+_62180119_62180182	0.275811	Six3_Six1_Six2	ENSMUST00000067743.1|Gm9949|ENSMUSG00000054589.1|predicted gene 9949
mm10_v2_chr15_+_98571004_98571026	0.27013	Six3_Six1_Six2	ENSMUST00000023728.6|4930415O20Rik|ENSMUSG00000022993.6|RIKEN cDNA 4930415O20 gene
mm10_v2_chr7_+_131032061_131032076	0.217584	Six3_Six1_Six2	ENSMUST00000084509.3|Dmbt1|ENSMUSG00000047517.9|deleted in malignant brain tumors 1
mm10_v2_chrX_+_169685191_169685250	0.20861	Six3_Six1_Six2	ENSMUST00000112104.1|Mid1|ENSMUSG00000035299.10|midline 1 	ENSMUST00000112107.1|Mid1|ENSMUSG00000035299.10|midline 1
mm10_v2_chr16_-_45724600_45724619	0.200922	Six3_Six1_Six2	ENSMUST00000096057.4|Tagln3|ENSMUSG00000022658.10|transgelin 3
mm10_v2_chrX_-_142966709_142966734	0.200063	Six3_Six1_Six2	ENSMUST00000041317.2|Ammecr1|ENSMUSG00000042225.3|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm10_v2_chr3_-_37724321_37724490	0.187876	Six3_Six1_Six2	ENSMUST00000108105.1|Gm5148|ENSMUSG00000058174.7|predicted gene 5148 	ENSMUST00000079755.4|Gm5148|ENSMUSG00000058174.7|predicted gene 5148 	ENSMUST00000099128.1|Gm5148|ENSMUSG00000058174.7|predicted gene 5148
mm10_v2_chr2_+_127336152_127336166	0.182957	Six3_Six1_Six2	ENSMUST00000028846.6|Dusp2|ENSMUSG00000027368.6|dual specificity phosphatase 2
mm10_v2_chr14_+_57798182_57798218	0.175231	Six3_Six1_Six2	ENSMUST00000111269.1|Sap18|ENSMUSG00000021963.10|Sin3-associated polypeptide 18
mm10_v2_chr8_-_4275886_4275915	0.173156	Six3_Six1_Six2	ENSMUST00000003029.7|Timm44|ENSMUSG00000002949.8|translocase of inner mitochondrial membrane 44
mm10_v2_chr10_+_23949516_23949516	0.168347	Six3_Six1_Six2	ENSMUST00000045152.4|Taar3|ENSMUSG00000069708.2|trace amine-associated receptor 3
mm10_v2_chrX_-_74373218_74373249	0.146171	Six3_Six1_Six2	ENSMUST00000178691.1|Ubl4|ENSMUSG00000015290.9|ubiquitin-like 4 	ENSMUST00000114146.1|Slc10a3|ENSMUSG00000032806.7|solute carrier family 10 (sodium/bile acid cotransporter family), member 3
mm10_v2_chr19_-_23075853_23075904	0.143115	Six3_Six1_Six2	ENSMUST00000181623.1|C330002G04Rik|ENSMUSG00000097930.1|RIKEN cDNA C330002G04 gene
mm10_v2_chr7_-_119459266_119459280	0.140175	Six3_Six1_Six2	ENSMUST00000033255.5|Gp2|ENSMUSG00000030954.9|glycoprotein 2 (zymogen granule membrane)
mm10_v2_chr15_+_82252397_82252475	0.118978	Six3_Six1_Six2	ENSMUST00000136948.1|1500009C09Rik|ENSMUSG00000068099.4|RIKEN cDNA 1500009C09 gene
mm10_v2_chr5_+_139423151_139423186	0.110502	Six3_Six1_Six2	ENSMUST00000066211.4|Gper1|ENSMUSG00000053647.4|G protein-coupled estrogen receptor 1
mm10_v2_chr1_+_136467958_136467958	0.102934	Six3_Six1_Six2	ENSMUST00000047817.6|Kif14|ENSMUSG00000041498.7|kinesin family member 14
mm10_v2_chrX_-_74373260_74373349	0.101018	Six3_Six1_Six2	ENSMUST00000073067.4|Slc10a3|ENSMUSG00000032806.7|solute carrier family 10 (sodium/bile acid cotransporter family), member 3 	ENSMUST00000037967.5|Slc10a3|ENSMUSG00000032806.7|solute carrier family 10 (sodium/bile acid cotransporter family), member 3
mm10_v2_chr13_+_104229366_104229388	0.0951354	Six3_Six1_Six2	ENSMUST00000022227.6|Cenpk|ENSMUSG00000021714.8|centromere protein K
mm10_v2_chr16_+_22920222_22920266	0.0884561	Six3_Six1_Six2	ENSMUST00000023587.4|Fetub|ENSMUSG00000022871.6|fetuin beta 	ENSMUST00000116625.2|Fetub|ENSMUSG00000022871.6|fetuin beta
mm10_v2_chr9_+_98422961_98422961	0.0881384	Six3_Six1_Six2	ENSMUST00000052068.9|Rbp1|ENSMUSG00000046402.9|retinol binding protein 1, cellular
mm10_v2_chr7_-_126676428_126676439	0.0828522	Six3_Six1_Six2	ENSMUST00000106373.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1
mm10_v2_chr7_-_80115294_80115392	0.0802724	Six3_Six1_Six2	ENSMUST00000107384.3|Idh2|ENSMUSG00000030541.10|isocitrate dehydrogenase 2 (NADP+), mitochondrial
mm10_v2_chr8_+_69832633_69832712	0.0793587	Six3_Six1_Six2	ENSMUST00000131637.2|Pbx4|ENSMUSG00000031860.11|pre B cell leukemia homeobox 4 	ENSMUST00000081503.6|Pbx4|ENSMUSG00000031860.11|pre B cell leukemia homeobox 4
mm10_v2_chr10_+_24595623_24595780	0.0705405	Six3_Six1_Six2	ENSMUST00000176228.1|Ctgf|ENSMUSG00000019997.5|connective tissue growth factor 	ENSMUST00000129142.1|Ctgf|ENSMUSG00000019997.5|connective tissue growth factor
mm10_v2_chr6_+_48537560_48537622	0.0686565	Six3_Six1_Six2	ENSMUST00000040361.5|Atp6v0e2|ENSMUSG00000039347.5|ATPase, H+ transporting, lysosomal V0 subunit E2
mm10_v2_chr17_-_40914350_40914350	0.0654538	Six3_Six1_Six2	ENSMUST00000166343.1|Glyatl3|ENSMUSG00000091043.1|glycine-N-acyltransferase-like 3
mm10_v2_chr4_-_43030440_43030593	0.0638403	Six3_Six1_Six2	ENSMUST00000135660.1|Stoml2|ENSMUSG00000028455.9|stomatin (Epb7.2)-like 2
mm10_v2_chr4_-_32950813_32950866	0.0630882	Six3_Six1_Six2	ENSMUST00000084750.1|Ankrd6|ENSMUSG00000040183.7|ankyrin repeat domain 6 	ENSMUST00000084748.2|Ankrd6|ENSMUSG00000040183.7|ankyrin repeat domain 6
mm10_v2_chr14_+_57798156_57798180	0.0586255	Six3_Six1_Six2	ENSMUST00000128764.1|Sap18|ENSMUSG00000021963.10|Sin3-associated polypeptide 18
mm10_v2_chr16_-_11203259_11203331	0.0510398	Six3_Six1_Six2	ENSMUST00000119953.1|Rsl1d1|ENSMUSG00000005846.11|ribosomal L1 domain containing 1
mm10_v2_chr17_+_35241746_35241778	0.0489267	Six3_Six1_Six2	ENSMUST00000068056.5|Ddx39b|ENSMUSG00000019432.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENSMUST00000174757.1|Ddx39b|ENSMUSG00000019432.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
mm10_v2_chr2_-_13271268_13271348	0.048466	Six3_Six1_Six2	ENSMUST00000137670.1|Rsu1|ENSMUSG00000026727.4|Ras suppressor protein 1 	ENSMUST00000114791.2|Rsu1|ENSMUSG00000026727.4|Ras suppressor protein 1
mm10_v2_chr4_-_60582152_60582199	0.0466728	Six3_Six1_Six2	ENSMUST00000098047.2|Mup10|ENSMUSG00000078680.3|major urinary protein 10
mm10_v2_chr15_-_76206309_76206357	0.0427414	Six3_Six1_Six2	ENSMUST00000073418.6|Plec|ENSMUSG00000022565.9|plectin 	ENSMUST00000171634.1|Plec|ENSMUSG00000022565.9|plectin 	ENSMUST00000076442.5|Plec|ENSMUSG00000022565.9|plectin
mm10_v2_chr11_-_101987004_101987013	0.0421308	Six3_Six1_Six2	ENSMUST00000107173.2|Dusp3|ENSMUSG00000003518.7|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related) 	ENSMUST00000107172.1|Dusp3|ENSMUSG00000003518.7|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)
mm10_v2_chr7_-_101903783_101903786	0.0414524	Six3_Six1_Six2	ENSMUST00000106969.1|Tomt|ENSMUSG00000078630.1|transmembrane O-methyltransferase
mm10_v2_chr19_-_55315980_55316038	0.040791	Six3_Six1_Six2	ENSMUST00000076891.5|Zdhhc6|ENSMUSG00000024982.9|zinc finger, DHHC domain containing 6
mm10_v2_chr6_+_123123423_123123484	0.0406874	Six3_Six1_Six2	ENSMUST00000032248.7|Clec4a2|ENSMUSG00000030148.9|C-type lectin domain family 4, member a2
mm10_v2_chr13_+_43785107_43785160	0.0379559	Six3_Six1_Six2	ENSMUST00000015540.2|Cd83|ENSMUSG00000015396.3|CD83 antigen
mm10_v2_chr6_+_38534823_38534872	0.0374141	Six3_Six1_Six2	ENSMUST00000019833.4|1110001J03Rik|ENSMUSG00000019689.4|RIKEN cDNA 1110001J03 gene
mm10_v2_chr17_+_35241838_35241870	0.036656	Six3_Six1_Six2	ENSMUST00000173731.1|Ddx39b|ENSMUSG00000019432.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
mm10_v2_chr8_-_86885222_86885282	0.0328459	Six3_Six1_Six2	ENSMUST00000034074.7|N4bp1|ENSMUSG00000031652.10|NEDD4 binding protein 1
mm10_v2_chr9_-_70503718_70503805	0.0321372	Six3_Six1_Six2	ENSMUST00000034739.5|Rnf111|ENSMUSG00000032217.6|ring finger 111
mm10_v2_chr3_-_40509737_40509782	0.0303241	Six3_Six1_Six2	ENSMUST00000179966.1|1700017G19Rik|ENSMUSG00000037884.4|RIKEN cDNA 1700017G19 gene
mm10_v2_chr4_-_60421933_60421955	0.0264605	Six3_Six1_Six2	ENSMUST00000107506.2|Mup9|ENSMUSG00000078686.5|major urinary protein 9 	ENSMUST00000122381.1|Mup9|ENSMUSG00000078686.5|major urinary protein 9 	ENSMUST00000118759.1|Mup9|ENSMUSG00000078686.5|major urinary protein 9 	ENSMUST00000122177.1|Mup9|ENSMUSG00000078686.5|major urinary protein 9
mm10_v2_chr2_-_13271419_13271437	0.0256746	Six3_Six1_Six2	ENSMUST00000028059.2|Rsu1|ENSMUSG00000026727.4|Ras suppressor protein 1
mm10_v2_chr5_+_104046869_104046899	0.0221787	Six3_Six1_Six2	ENSMUST00000031250.7|Nudt9|ENSMUSG00000029310.7|nudix (nucleoside diphosphate linked moiety X)-type motif 9
mm10_v2_chr8_+_84831522_84831522	0.0218959	Six3_Six1_Six2	ENSMUST00000036734.5|Gadd45gip1|ENSMUSG00000033751.5|growth arrest and DNA-damage-inducible, gamma interacting protein 1
mm10_v2_chr16_-_18235074_18235184	0.0213958	Six3_Six1_Six2	ENSMUST00000076957.5|Zdhhc8|ENSMUSG00000060166.5|zinc finger, DHHC domain containing 8
mm10_v2_chr15_+_38661904_38661981	0.0204353	Six3_Six1_Six2	ENSMUST00000022904.6|Atp6v1c1|ENSMUSG00000022295.7|ATPase, H+ transporting, lysosomal V1 subunit C1
mm10_v2_chr8_-_22653406_22653458	0.0183198	Six3_Six1_Six2	ENSMUST00000033938.5|Polb|ENSMUSG00000031536.5|polymerase (DNA directed), beta
mm10_v2_chr9_-_121839460_121839465	0.0173442	Six3_Six1_Six2	ENSMUST00000135986.2|Ccdc13|ENSMUSG00000079235.4|coiled-coil domain containing 13
mm10_v2_chr19_-_38043559_38043600	0.0166473	Six3_Six1_Six2	ENSMUST00000041475.8|Myof|ENSMUSG00000048612.9|myoferlin 	ENSMUST00000172095.2|Myof|ENSMUSG00000048612.9|myoferlin
mm10_v2_chr2_+_117249725_117249754	0.0150048	Six3_Six1_Six2	ENSMUST00000028825.4|Fam98b|ENSMUSG00000027349.5|family with sequence similarity 98, member B
mm10_v2_chr4_-_106730925_106730975	0.0146817	Six3_Six1_Six2	ENSMUST00000148281.1|Mroh7|ENSMUSG00000047502.8|maestro heat-like repeat family member 7
mm10_v2_chr5_+_138820080_138820080	0.012473	Six3_Six1_Six2	ENSMUST00000179205.1|Gm5294|ENSMUSG00000094504.1|predicted gene 5294
mm10_v2_chr17_+_40811089_40811133	0.0109999	Six3_Six1_Six2	ENSMUST00000024721.7|Rhag|ENSMUSG00000023926.7|Rhesus blood group-associated A glycoprotein
mm10_v2_chr11_-_99230998_99231019	0.00996938	Six3_Six1_Six2	ENSMUST00000103133.3|Smarce1|ENSMUSG00000037935.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
mm10_v2_chr10_+_70868633_70868669	0.00925364	Six3_Six1_Six2	ENSMUST00000058942.5|4930533K18Rik|ENSMUSG00000047692.5|RIKEN cDNA 4930533K18 gene
mm10_v2_chr16_+_11203375_11203448	0.00906975	Six3_Six1_Six2	ENSMUST00000181526.1|2610020C07Rik|ENSMUSG00000097537.1|RIKEN cDNA 2610020C07 gene
mm10_v2_chr6_-_115675871_115675964	0.00751588	Six3_Six1_Six2	ENSMUST00000112949.1|Raf1|ENSMUSG00000000441.11|v-raf-leukemia viral oncogene 1
mm10_v2_chr4_-_116651644_116651680	0.00688123	Six3_Six1_Six2	ENSMUST00000030455.8|Akr1a1|ENSMUSG00000028692.8|aldo-keto reductase family 1, member A1 (aldehyde reductase)
mm10_v2_chr7_+_30232310_30232350	0.00571071	Six3_Six1_Six2	ENSMUST00000108193.1|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I 	ENSMUST00000108192.1|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr12_+_84773262_84773319	0.0046701	Six3_Six1_Six2	ENSMUST00000021667.5|Isca2|ENSMUSG00000021241.6|iron-sulfur cluster assembly 2 homolog (S. cerevisiae)
mm10_v2_chr14_+_55765956_55765999	0.0024307	Six3_Six1_Six2	ENSMUST00000057569.3|Ltb4r1|ENSMUSG00000046908.5|leukotriene B4 receptor 1
mm10_v2_chr5_+_140607334_140607352	0.00191634	Six3_Six1_Six2	ENSMUST00000031555.1|Lfng|ENSMUSG00000029570.1|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
