mm10_v2_chr11_+_69965396_69965510	1.20021	Thra	ENSMUST00000018713.6|Cldn7|ENSMUSG00000018569.6|claudin 7
mm10_v2_chr12_-_113260217_113260236	0.645525	Thra	ENSMUST00000178282.1|Igha|ENSMUSG00000095079.1|immunoglobulin heavy constant alpha
mm10_v2_chr13_-_99900645_99900683	0.60331	Thra	ENSMUST00000022150.6|Cartpt|ENSMUSG00000021647.6|CART prepropeptide
mm10_v2_chr7_-_73537621_73537766	0.519964	Thra	ENSMUST00000172704.1|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr7_+_140093388_140093402	0.394784	Thra	ENSMUST00000026540.8|Prap1|ENSMUSG00000025467.8|proline-rich acidic protein 1
mm10_v2_chr7_+_35802593_35802593	0.368717	Thra	ENSMUST00000052454.2|E130304I02Rik|ENSMUSG00000044997.2|RIKEN cDNA E130304I02 gene
mm10_v2_chr8_+_105708270_105708302	0.347004	Thra	ENSMUST00000013302.5|4933405L10Rik|ENSMUSG00000013158.5|RIKEN cDNA 4933405L10 gene
mm10_v2_chr2_-_25501717_25501724	0.323867	Thra	ENSMUST00000015227.3|C8g|ENSMUSG00000015083.5|complement component 8, gamma polypeptide
mm10_v2_chr1_+_134193432_134193448	0.31799	Thra	ENSMUST00000038445.6|Mybph|ENSMUSG00000042451.6|myosin binding protein H
mm10_v2_chr4_-_107307118_107307169	0.31236	Thra	ENSMUST00000126291.1|Dio1|ENSMUSG00000034785.8|deiodinase, iodothyronine, type I 	ENSMUST00000106748.1|Dio1|ENSMUSG00000034785.8|deiodinase, iodothyronine, type I 	ENSMUST00000129138.1|Dio1|ENSMUSG00000034785.8|deiodinase, iodothyronine, type I 	ENSMUST00000082426.3|Dio1|ENSMUSG00000034785.8|deiodinase, iodothyronine, type I
mm10_v2_chr11_-_33513626_33513666	0.280748	Thra	ENSMUST00000037522.7|Ranbp17|ENSMUSG00000040594.12|RAN binding protein 17
mm10_v2_chr15_+_89568322_89568326	0.26768	Thra	ENSMUST00000023295.2|Acr|ENSMUSG00000022622.4|acrosin prepropeptide
mm10_v2_chr2_+_155382186_155382274	0.261632	Thra	ENSMUST00000134218.1|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2
mm10_v2_chr12_+_44328882_44328954	0.260569	Thra	ENSMUST00000020939.8|Nrcam|ENSMUSG00000020598.9|neuron-glia-CAM-related cell adhesion molecule 	ENSMUST00000110748.2|Nrcam|ENSMUSG00000020598.9|neuron-glia-CAM-related cell adhesion molecule
mm10_v2_chr8_-_54529951_54530007	0.254861	Thra	ENSMUST00000067476.8|Spcs3|ENSMUSG00000054408.9|signal peptidase complex subunit 3 homolog (S. cerevisiae)
mm10_v2_chr17_+_28575718_28575743	0.250939	Thra	ENSMUST00000080780.6|Lhfpl5|ENSMUSG00000062252.8|lipoma HMGIC fusion partner-like 5
mm10_v2_chr2_+_32525013_32525037	0.245833	Thra	ENSMUST00000150621.1|Gm13412|ENSMUSG00000085017.1|predicted gene 13412
mm10_v2_chr3_+_114030532_114030571	0.239547	Thra	ENSMUST00000123619.1|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1 	ENSMUST00000092155.5|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1
mm10_v2_chrX_-_143827391_143827414	0.23713	Thra	ENSMUST00000087316.5|Capn6|ENSMUSG00000067276.5|calpain 6
mm10_v2_chr4_+_54947976_54948054	0.235345	Thra	ENSMUST00000098070.3|Zfp462|ENSMUSG00000060206.5|zinc finger protein 462
mm10_v2_chr19_-_5845471_5845485	0.235217	Thra	ENSMUST00000174287.1|Neat1|ENSMUSG00000092274.2|nuclear paraspeckle assembly transcript 1 (non-protein coding) 	ENSMUST00000173672.1|Neat1|ENSMUSG00000092274.2|nuclear paraspeckle assembly transcript 1 (non-protein coding)
mm10_v2_chr1_-_134234492_134234578	0.231805	Thra	ENSMUST00000169927.1|Adora1|ENSMUSG00000042429.7|adenosine A1 receptor
mm10_v2_chr5_+_91139591_91139615	0.225789	Thra	ENSMUST00000031325.4|Areg|ENSMUSG00000029378.4|amphiregulin
mm10_v2_chr7_-_141214080_141214082	0.22475	Thra	ENSMUST00000026573.5|1600016N20Rik|ENSMUSG00000025500.5|RIKEN cDNA 1600016N20 gene 	ENSMUST00000170841.1|1600016N20Rik|ENSMUSG00000025500.5|RIKEN cDNA 1600016N20 gene
mm10_v2_chr2_-_65239039_65239058	0.222281	Thra	ENSMUST00000155916.1|Cobll1|ENSMUSG00000034903.12|Cobl-like 1
mm10_v2_chr2_+_112265809_112265858	0.210791	Thra	ENSMUST00000110991.2|Slc12a6|ENSMUSG00000027130.9|solute carrier family 12, member 6
mm10_v2_chr5_+_35056813_35056895	0.210692	Thra	ENSMUST00000101298.2|Dok7|ENSMUSG00000044716.6|docking protein 7 	ENSMUST00000114270.1|Dok7|ENSMUSG00000044716.6|docking protein 7 	ENSMUST00000133381.1|Dok7|ENSMUSG00000044716.6|docking protein 7
mm10_v2_chr7_+_19083842_19083941	0.20286	Thra	ENSMUST00000032568.7|Dmpk|ENSMUSG00000030409.9|dystrophia myotonica-protein kinase 	ENSMUST00000122999.1|Dmpk|ENSMUSG00000030409.9|dystrophia myotonica-protein kinase 	ENSMUST00000108473.3|Dmpk|ENSMUSG00000030409.9|dystrophia myotonica-protein kinase 	ENSMUST00000108474.1|Dmpk|ENSMUSG00000030409.9|dystrophia myotonica-protein kinase
mm10_v2_chr7_+_45514619_45514642	0.20124	Thra	ENSMUST00000107761.1|Tulp2|ENSMUSG00000023467.10|tubby-like protein 2
mm10_v2_chr19_+_31868754_31868787	0.20056	Thra	ENSMUST00000075838.5|A1cf|ENSMUSG00000052595.6|APOBEC1 complementation factor
mm10_v2_chrX_+_86191764_86191782	0.194476	Thra	ENSMUST00000026036.4|Nr0b1|ENSMUSG00000025056.4|nuclear receptor subfamily 0, group B, member 1
mm10_v2_chr7_+_142441808_142441825	0.190154	Thra	ENSMUST00000105971.1|Tnni2|ENSMUSG00000031097.8|troponin I, skeletal, fast 2 	ENSMUST00000145287.1|Tnni2|ENSMUSG00000031097.8|troponin I, skeletal, fast 2
mm10_v2_chrX_+_101449078_101449089	0.189069	Thra	ENSMUST00000033674.5|Itgb1bp2|ENSMUSG00000031312.5|integrin beta 1 binding protein 2
mm10_v2_chr8_-_67910911_67910935	0.188719	Thra	ENSMUST00000093468.5|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr2_-_65239092_65239125	0.1883	Thra	ENSMUST00000156643.1|Cobll1|ENSMUSG00000034903.12|Cobl-like 1
mm10_v2_chr11_-_95146263_95146263	0.186004	Thra	ENSMUST00000021241.6|Dlx4|ENSMUSG00000020871.7|distal-less homeobox 4
mm10_v2_chr2_+_130406478_130406532	0.178842	Thra	ENSMUST00000055421.4|Tmem239|ENSMUSG00000049692.6|transmembrane 239
mm10_v2_chr19_+_8764934_8765034	0.172156	Thra	ENSMUST00000184663.1|Nxf1|ENSMUSG00000010097.7|nuclear RNA export factor 1
mm10_v2_chr9_+_121950988_121951044	0.17176	Thra	ENSMUST00000043011.7|Fam198a|ENSMUSG00000038233.8|family with sequence similarity 198, member A
mm10_v2_chr16_-_34095983_34096060	0.16661	Thra	ENSMUST00000114973.1|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase 	ENSMUST00000114964.1|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase
mm10_v2_chr9_-_99358518_99358552	0.166244	Thra	ENSMUST00000042158.6|Esyt3|ENSMUSG00000037681.7|extended synaptotagmin-like protein 3
mm10_v2_chr6_+_29396665_29396685	0.165967	Thra	ENSMUST00000096084.5|Ccdc136|ENSMUSG00000029769.10|coiled-coil domain containing 136
mm10_v2_chr3_+_122729158_122729182	0.164892	Thra	ENSMUST00000066728.5|Pde5a|ENSMUSG00000053965.6|phosphodiesterase 5A, cGMP-specific
mm10_v2_chr1_+_131750485_131750494	0.163087	Thra	ENSMUST00000147800.1|Slc26a9|ENSMUSG00000042268.4|solute carrier family 26, member 9
mm10_v2_chr11_-_71019233_71019303	0.161279	Thra	ENSMUST00000108523.3|Derl2|ENSMUSG00000018442.7|Der1-like domain family, member 2 	ENSMUST00000143850.1|Derl2|ENSMUSG00000018442.7|Der1-like domain family, member 2
mm10_v2_chr2_+_129592818_129592885	0.159079	Thra	ENSMUST00000153491.1|Sirpa|ENSMUSG00000037902.12|signal-regulatory protein alpha 	ENSMUST00000161620.1|Sirpa|ENSMUSG00000037902.12|signal-regulatory protein alpha 	ENSMUST00000179001.1|Sirpa|ENSMUSG00000037902.12|signal-regulatory protein alpha
mm10_v2_chr16_+_91485295_91485336	0.158065	Thra	ENSMUST00000129878.1|Ifnar1|ENSMUSG00000022967.6|interferon (alpha and beta) receptor 1
mm10_v2_chr12_-_111712946_111712958	0.155837	Thra	ENSMUST00000160825.1|Bag5|ENSMUSG00000049792.6|BCL2-associated athanogene 5 	ENSMUST00000162953.1|Bag5|ENSMUSG00000049792.6|BCL2-associated athanogene 5
mm10_v2_chr2_-_5063996_5064048	0.154139	Thra	ENSMUST00000114996.1|Optn|ENSMUSG00000026672.5|optineurin
mm10_v2_chrX_-_7967817_7967910	0.152983	Thra	ENSMUST00000033502.7|Gata1|ENSMUSG00000031162.8|GATA binding protein 1
mm10_v2_chr4_-_20778852_20778876	0.152552	Thra	ENSMUST00000102998.3|Nkain3|ENSMUSG00000055761.8|Na+/K+ transporting ATPase interacting 3
mm10_v2_chr2_+_155381808_155381884	0.152272	Thra	ENSMUST00000043237.7|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2 	ENSMUST00000174685.1|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2
mm10_v2_chr11_-_33513736_33513771	0.151043	Thra	ENSMUST00000102815.3|Ranbp17|ENSMUSG00000040594.12|RAN binding protein 17
mm10_v2_chr2_+_102706356_102706438	0.150453	Thra	ENSMUST00000123759.1|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2 	ENSMUST00000111212.1|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2 	ENSMUST00000005220.4|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr17_+_34644805_34644870	0.147527	Thra	ENSMUST00000174796.1|Fkbpl|ENSMUSG00000033739.8|FK506 binding protein-like
mm10_v2_chr3_+_108284089_108284100	0.147466	Thra	ENSMUST00000102632.4|Sort1|ENSMUSG00000068747.8|sortilin 1
mm10_v2_chr2_+_129592914_129592940	0.146877	Thra	ENSMUST00000103203.1|Sirpa|ENSMUSG00000037902.12|signal-regulatory protein alpha
mm10_v2_chr6_+_29396576_29396658	0.146444	Thra	ENSMUST00000115275.1|Ccdc136|ENSMUSG00000029769.10|coiled-coil domain containing 136
mm10_v2_chr13_+_44729794_44729807	0.139372	Thra	ENSMUST00000172830.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr10_-_7681118_7681163	0.136464	Thra	ENSMUST00000159977.1|Pcmt1|ENSMUSG00000019795.11|protein-L-isoaspartate (D-aspartate) O-methyltransferase 1 	ENSMUST00000162682.1|Pcmt1|ENSMUSG00000019795.11|protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
mm10_v2_chr1_+_163994866_163994904	0.134153	Thra	ENSMUST00000111490.1|Mettl18|ENSMUSG00000041396.7|methyltransferase like 18 	ENSMUST00000045694.7|Mettl18|ENSMUSG00000041396.7|methyltransferase like 18
mm10_v2_chr14_-_47189406_47189419	0.132146	Thra	ENSMUST00000089959.6|Gch1|ENSMUSG00000037580.9|GTP cyclohydrolase 1
mm10_v2_chr4_-_140774196_140774236	0.130857	Thra	ENSMUST00000026381.6|Padi4|ENSMUSG00000025330.6|peptidyl arginine deiminase, type IV
mm10_v2_chr8_+_76899772_76899828	0.129382	Thra	ENSMUST00000109913.2|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2
mm10_v2_chr2_-_6212979_6213002	0.128797	Thra	ENSMUST00000114941.1|Echdc3|ENSMUSG00000039063.3|enoyl Coenzyme A hydratase domain containing 3
mm10_v2_chr5_-_137625069_137625079	0.128438	Thra	ENSMUST00000031732.7|Fbxo24|ENSMUSG00000089984.1|F-box protein 24
mm10_v2_chr10_-_62527413_62527435	0.127736	Thra	ENSMUST00000160643.1|Srgn|ENSMUSG00000020077.8|serglycin
mm10_v2_chr2_+_173659834_173659871	0.125905	Thra	ENSMUST00000109110.3|Rab22a|ENSMUSG00000027519.4|RAB22A, member RAS oncogene family
mm10_v2_chr1_-_157108632_157108680	0.125278	Thra	ENSMUST00000118207.1|Tex35|ENSMUSG00000026592.7|testis expressed 35 	ENSMUST00000027884.6|Tex35|ENSMUSG00000026592.7|testis expressed 35 	ENSMUST00000121911.1|Tex35|ENSMUSG00000026592.7|testis expressed 35
mm10_v2_chr16_+_24721842_24721882	0.125079	Thra	ENSMUST00000115314.2|Lpp|ENSMUSG00000033306.8|LIM domain containing preferred translocation partner in lipoma
mm10_v2_chr14_-_21741476_21741519	0.123227	Thra	ENSMUST00000184703.1|Dusp13|ENSMUSG00000021768.9|dual specificity phosphatase 13 	ENSMUST00000183698.1|Dusp13|ENSMUSG00000021768.9|dual specificity phosphatase 13 	ENSMUST00000119866.2|Dusp13|ENSMUSG00000021768.9|dual specificity phosphatase 13
mm10_v2_chr10_+_60399726_60399772	0.122993	Thra	ENSMUST00000164428.1|Gm17455|ENSMUSG00000090439.1|predicted gene, 17455
mm10_v2_chr4_+_62663620_62663664	0.115352	Thra	ENSMUST00000126338.1|Rgs3|ENSMUSG00000059810.12|regulator of G-protein signaling 3
mm10_v2_chrX_-_135210672_135210700	0.110094	Thra	ENSMUST00000033783.1|Tceal6|ENSMUSG00000031409.1|transcription elongation factor A (SII)-like 6
mm10_v2_chr5_+_119834663_119834663	0.10614	Thra	ENSMUST00000018407.6|Tbx5|ENSMUSG00000018263.8|T-box 5
mm10_v2_chr3_+_95164306_95164374	0.105694	Thra	ENSMUST00000107217.1|Sema6c|ENSMUSG00000038777.13|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C 	ENSMUST00000168321.1|Sema6c|ENSMUSG00000038777.13|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
mm10_v2_chrX_+_73716712_73716750	0.105348	Thra	ENSMUST00000114461.2|Abcd1|ENSMUSG00000031378.8|ATP-binding cassette, sub-family D (ALD), member 1
mm10_v2_chr12_+_112678803_112678878	0.104565	Thra	ENSMUST00000174780.1|Zbtb42|ENSMUSG00000037638.5|zinc finger and BTB domain containing 42 	ENSMUST00000169593.1|Zbtb42|ENSMUSG00000037638.5|zinc finger and BTB domain containing 42 	ENSMUST00000173942.1|Zbtb42|ENSMUSG00000037638.5|zinc finger and BTB domain containing 42
mm10_v2_chr9_-_44288131_44288153	0.102545	Thra	ENSMUST00000160384.1|Abcg4|ENSMUSG00000032131.9|ATP-binding cassette, sub-family G (WHITE), member 4
mm10_v2_chr18_+_57142782_57142796	0.101649	Thra	ENSMUST00000139892.1|Megf10|ENSMUSG00000024593.9|multiple EGF-like-domains 10
mm10_v2_chr13_+_44729535_44729697	0.101559	Thra	ENSMUST00000174068.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr13_+_95696851_95696869	0.10011	Thra	ENSMUST00000022182.4|F2rl2|ENSMUSG00000021675.4|coagulation factor II (thrombin) receptor-like 2
mm10_v2_chrX_+_145119501_145119501	0.0988551	Thra	ENSMUST00000096301.4|Zcchc16|ENSMUSG00000071679.4|zinc finger, CCHC domain containing 16
mm10_v2_chr1_+_106861144_106861203	0.0981882	Thra	ENSMUST00000086701.6|Serpinb5|ENSMUSG00000067006.6|serine (or cysteine) peptidase inhibitor, clade B, member 5 	ENSMUST00000112730.1|Serpinb5|ENSMUSG00000067006.6|serine (or cysteine) peptidase inhibitor, clade B, member 5
mm10_v2_chr3_+_95160449_95160505	0.0976378	Thra	ENSMUST00000090823.1|Sema6c|ENSMUSG00000038777.13|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C 	ENSMUST00000090821.3|Sema6c|ENSMUSG00000038777.13|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
mm10_v2_chr1_+_160044564_160044590	0.0968832	Thra	ENSMUST00000168359.1|4930523C07Rik|ENSMUSG00000050883.8|RIKEN cDNA 4930523C07 gene
mm10_v2_chr10_+_93641041_93641056	0.0965741	Thra	ENSMUST00000020204.4|Ntn4|ENSMUSG00000020019.4|netrin 4
mm10_v2_chr9_+_111019284_111019298	0.0950349	Thra	ENSMUST00000035077.3|Ltf|ENSMUSG00000032496.3|lactotransferrin
mm10_v2_chr11_+_82115180_82115186	0.0909796	Thra	ENSMUST00000009329.2|Ccl8|ENSMUSG00000009185.2|chemokine (C-C motif) ligand 8
mm10_v2_chr7_-_4604041_4604053	0.0903176	Thra	ENSMUST00000166650.1|Ptprh|ENSMUSG00000035429.7|protein tyrosine phosphatase, receptor type, H
mm10_v2_chrX_+_101376359_101376378	0.0892678	Thra	ENSMUST00000119080.1|Gjb1|ENSMUSG00000047797.8|gap junction protein, beta 1
mm10_v2_chr4_-_145194999_145195044	0.089213	Thra	ENSMUST00000036579.7|Vps13d|ENSMUSG00000020220.10|vacuolar protein sorting 13 D (yeast)
mm10_v2_chr6_-_124769548_124769673	0.0890513	Thra	ENSMUST00000149652.1|Eno2|ENSMUSG00000004267.10|enolase 2, gamma neuronal 	ENSMUST00000112476.1|Eno2|ENSMUSG00000004267.10|enolase 2, gamma neuronal 	ENSMUST00000004378.8|Eno2|ENSMUSG00000004267.10|enolase 2, gamma neuronal
mm10_v2_chr3_-_52104891_52104922	0.0886404	Thra	ENSMUST00000121440.1|Maml3|ENSMUSG00000061143.9|mastermind like 3 (Drosophila)
mm10_v2_chr10_+_127195240_127195298	0.0877413	Thra	ENSMUST00000181578.1|F420014N23Rik|ENSMUSG00000097331.1|RIKEN cDNA F420014N23 gene
mm10_v2_chr2_+_173659760_173659816	0.0875828	Thra	ENSMUST00000029024.3|Rab22a|ENSMUSG00000027519.4|RAB22A, member RAS oncogene family
mm10_v2_chr5_+_32863700_32863777	0.0836923	Thra	ENSMUST00000149350.1|Depdc5|ENSMUSG00000037426.11|DEP domain containing 5 	ENSMUST00000118698.1|Depdc5|ENSMUSG00000037426.11|DEP domain containing 5 	ENSMUST00000150130.1|Depdc5|ENSMUSG00000037426.11|DEP domain containing 5 	ENSMUST00000087897.4|Depdc5|ENSMUSG00000037426.11|DEP domain containing 5 	ENSMUST00000119705.1|Depdc5|ENSMUSG00000037426.11|DEP domain containing 5 	ENSMUST00000125574.1|Depdc5|ENSMUSG00000037426.11|DEP domain containing 5 	ENSMUST00000049780.6|Depdc5|ENSMUSG00000037426.11|DEP domain containing 5
mm10_v2_chr16_-_26526744_26526774	0.0836184	Thra	ENSMUST00000165687.1|Tmem207|ENSMUSG00000091972.1|transmembrane protein 207
mm10_v2_chr3_-_96172384_96172462	0.0833139	Thra	ENSMUST00000180958.1|Gm17690|ENSMUSG00000097204.1|predicted gene, 17690
mm10_v2_chr9_+_107576915_107576990	0.0827857	Thra	ENSMUST00000112387.2|Hyal1|ENSMUSG00000010051.9|hyaluronoglucosaminidase 1 	ENSMUST00000123005.1|Hyal1|ENSMUSG00000010051.9|hyaluronoglucosaminidase 1 	ENSMUST00000010195.7|Hyal1|ENSMUSG00000010051.9|hyaluronoglucosaminidase 1 	ENSMUST00000144392.1|Hyal1|ENSMUSG00000010051.9|hyaluronoglucosaminidase 1
mm10_v2_chr14_+_25459267_25459297	0.0816717	Thra	ENSMUST00000007961.8|Zmiz1|ENSMUSG00000007817.8|zinc finger, MIZ-type containing 1
mm10_v2_chr19_-_37176055_37176078	0.0791503	Thra	ENSMUST00000142973.1|Cpeb3|ENSMUSG00000039652.10|cytoplasmic polyadenylation element binding protein 3 	ENSMUST00000154376.1|Cpeb3|ENSMUSG00000039652.10|cytoplasmic polyadenylation element binding protein 3
mm10_v2_chr19_-_47144174_47144174	0.0784609	Thra	ENSMUST00000111813.1|Calhm1|ENSMUSG00000079258.1|calcium homeostasis modulator 1
mm10_v2_chr7_-_4771262_4771275	0.0783633	Thra	ENSMUST00000108580.2|Fam71e2|ENSMUSG00000092518.3|family with sequence similarity 71, member E2
mm10_v2_chrX_+_136666375_136666611	0.0769387	Thra	ENSMUST00000060904.4|Tceal3|ENSMUSG00000044550.5|transcription elongation factor A (SII)-like 3 	ENSMUST00000113100.1|Tceal3|ENSMUSG00000044550.5|transcription elongation factor A (SII)-like 3 	ENSMUST00000128040.1|Tceal3|ENSMUSG00000044550.5|transcription elongation factor A (SII)-like 3
mm10_v2_chr7_-_19796789_19796829	0.0766	Thra	ENSMUST00000108449.2|Cblc|ENSMUSG00000040525.7|Casitas B-lineage lymphoma c 	ENSMUST00000043822.7|Cblc|ENSMUSG00000040525.7|Casitas B-lineage lymphoma c
mm10_v2_chr11_+_7063423_7063496	0.0758784	Thra	ENSMUST00000020706.4|Adcy1|ENSMUSG00000020431.5|adenylate cyclase 1
mm10_v2_chr11_+_67586675_67586720	0.075645	Thra	ENSMUST00000108680.1|Gas7|ENSMUSG00000033066.9|growth arrest specific 7
mm10_v2_chr7_-_4771279_4771328	0.0755436	Thra	ENSMUST00000174409.1|Fam71e2|ENSMUSG00000092518.3|family with sequence similarity 71, member E2
mm10_v2_chr5_-_72868431_72868459	0.0750189	Thra	ENSMUST00000073843.6|Tec|ENSMUSG00000029217.10|tec protein tyrosine kinase 	ENSMUST00000071944.6|Tec|ENSMUSG00000029217.10|tec protein tyrosine kinase 	ENSMUST00000113594.1|Tec|ENSMUSG00000029217.10|tec protein tyrosine kinase
mm10_v2_chr7_+_83584910_83585092	0.0728786	Thra	ENSMUST00000039317.7|Tmc3|ENSMUSG00000038540.8|transmembrane channel-like gene family 3 	ENSMUST00000164944.1|Tmc3|ENSMUSG00000038540.8|transmembrane channel-like gene family 3
mm10_v2_chr9_-_54501496_54501644	0.072153	Thra	ENSMUST00000118600.1|Dmxl2|ENSMUSG00000041268.10|Dmx-like 2 	ENSMUST00000118163.1|Dmxl2|ENSMUSG00000041268.10|Dmx-like 2
mm10_v2_chr16_-_19983005_19983037	0.0718885	Thra	ENSMUST00000058839.8|Klhl6|ENSMUSG00000043008.8|kelch-like 6
mm10_v2_chr2_+_102658640_102658669	0.0718668	Thra	ENSMUST00000080210.3|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr16_+_10545390_10545427	0.0714989	Thra	ENSMUST00000115827.1|Clec16a|ENSMUSG00000068663.7|C-type lectin domain family 16, member A 	ENSMUST00000038145.6|Clec16a|ENSMUSG00000068663.7|C-type lectin domain family 16, member A 	ENSMUST00000150894.1|Clec16a|ENSMUSG00000068663.7|C-type lectin domain family 16, member A
mm10_v2_chr4_-_140665891_140666012	0.0714467	Thra	ENSMUST00000069623.5|Arhgef10l|ENSMUSG00000040964.10|Rho guanine nucleotide exchange factor (GEF) 10-like
mm10_v2_chr2_-_121806988_121807018	0.071357	Thra	ENSMUST00000110592.1|Frmd5|ENSMUSG00000027238.10|FERM domain containing 5
mm10_v2_chr18_-_64660981_64661010	0.0710675	Thra	ENSMUST00000025482.8|Atp8b1|ENSMUSG00000039529.8|ATPase, class I, type 8B, member 1
mm10_v2_chr3_+_96829459_96829474	0.0702354	Thra	ENSMUST00000138014.1|Pdzk1|ENSMUSG00000038298.8|PDZ domain containing 1
mm10_v2_chr13_-_59744921_59744921	0.0701607	Thra	ENSMUST00000180139.1|1700014D04Rik|ENSMUSG00000051054.3|RIKEN cDNA 1700014D04 gene
mm10_v2_chr2_-_6213033_6213044	0.0697737	Thra	ENSMUST00000042658.2|Echdc3|ENSMUSG00000039063.3|enoyl Coenzyme A hydratase domain containing 3
mm10_v2_chr1_-_84839304_84839321	0.0692059	Thra	ENSMUST00000027421.6|Trip12|ENSMUSG00000026219.8|thyroid hormone receptor interactor 12
mm10_v2_chr7_+_45514581_45514614	0.0680758	Thra	ENSMUST00000151506.1|Tulp2|ENSMUSG00000023467.10|tubby-like protein 2 	ENSMUST00000085331.5|Tulp2|ENSMUSG00000023467.10|tubby-like protein 2 	ENSMUST00000126061.1|Tulp2|ENSMUSG00000023467.10|tubby-like protein 2
mm10_v2_chr13_+_94875600_94875611	0.067466	Thra	ENSMUST00000022195.10|Otp|ENSMUSG00000021685.10|orthopedia homolog (Drosophila)
mm10_v2_chr5_+_72914554_72914625	0.066579	Thra	ENSMUST00000143829.1|Slain2|ENSMUSG00000036087.12|SLAIN motif family, member 2
mm10_v2_chr1_-_170306332_170306332	0.0657236	Thra	ENSMUST00000179801.1|Gm7694|ENSMUSG00000096603.1|predicted gene 7694
mm10_v2_chr6_+_86628174_86628208	0.0653614	Thra	ENSMUST00000043400.6|Asprv1|ENSMUSG00000033508.6|aspartic peptidase, retroviral-like 1
mm10_v2_chr12_+_84641019_84641019	0.064808	Thra	ENSMUST00000166772.2|Vrtn|ENSMUSG00000071235.5|vertebrae development associated
mm10_v2_chr2_-_121807024_121807087	0.064541	Thra	ENSMUST00000138157.1|Frmd5|ENSMUSG00000027238.10|FERM domain containing 5
mm10_v2_chr12_+_79029150_79029193	0.0641728	Thra	ENSMUST00000039928.5|Plekhh1|ENSMUSG00000060716.6|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
mm10_v2_chr4_-_20778527_20778593	0.0635155	Thra	ENSMUST00000119374.1|Nkain3|ENSMUSG00000055761.8|Na+/K+ transporting ATPase interacting 3
mm10_v2_chr3_-_94786469_94786492	0.0626352	Thra	ENSMUST00000107273.1|Cgn|ENSMUSG00000068876.8|cingulin
mm10_v2_chr15_+_102990576_102990622	0.0624556	Thra	ENSMUST00000001703.6|Hoxc8|ENSMUSG00000001657.6|homeobox C8
mm10_v2_chr2_+_152911311_152911366	0.0618749	Thra	ENSMUST00000028970.7|Mylk2|ENSMUSG00000027470.9|myosin, light polypeptide kinase 2, skeletal muscle
mm10_v2_chr2_-_26389267_26389323	0.0615465	Thra	ENSMUST00000114100.3|Sdccag3|ENSMUSG00000026927.11|serologically defined colon cancer antigen 3 	ENSMUST00000077983.6|Sdccag3|ENSMUSG00000026927.11|serologically defined colon cancer antigen 3 	ENSMUST00000028293.5|Sdccag3|ENSMUSG00000026927.11|serologically defined colon cancer antigen 3 	ENSMUST00000114102.3|Sdccag3|ENSMUSG00000026927.11|serologically defined colon cancer antigen 3
mm10_v2_chr16_+_72663143_72663189	0.061172	Thra	ENSMUST00000023600.7|Robo1|ENSMUSG00000022883.10|roundabout homolog 1 (Drosophila)
mm10_v2_chr4_-_19708922_19709004	0.0609084	Thra	ENSMUST00000108246.2|Wwp1|ENSMUSG00000041058.9|WW domain containing E3 ubiquitin protein ligase 1
mm10_v2_chr3_+_86224665_86224717	0.0601669	Thra	ENSMUST00000107635.1|Lrba|ENSMUSG00000028080.10|LPS-responsive beige-like anchor
mm10_v2_chr16_-_31275277_31275290	0.0600721	Thra	ENSMUST00000060188.7|Ppp1r2|ENSMUSG00000047714.8|protein phosphatase 1, regulatory (inhibitor) subunit 2
mm10_v2_chr16_+_32431225_32431280	0.0594276	Thra	ENSMUST00000115140.1|Pcyt1a|ENSMUSG00000005615.8|phosphate cytidylyltransferase 1, choline, alpha isoform
mm10_v2_chrX_-_166585679_166585737	0.0592696	Thra	ENSMUST00000000412.2|Egfl6|ENSMUSG00000000402.2|EGF-like-domain, multiple 6
mm10_v2_chr4_-_118409219_118409282	0.057531	Thra	ENSMUST00000075406.5|Szt2|ENSMUSG00000033253.12|seizure threshold 2
mm10_v2_chr4_-_41048124_41048140	0.0574773	Thra	ENSMUST00000030136.6|Aqp7|ENSMUSG00000028427.7|aquaporin 7
mm10_v2_chr3_-_94786430_94786466	0.0568407	Thra	ENSMUST00000107272.1|Cgn|ENSMUSG00000068876.8|cingulin
mm10_v2_chr8_-_91801547_91801560	0.0566772	Thra	ENSMUST00000093312.4|Irx3|ENSMUSG00000031734.11|Iroquois related homeobox 3 (Drosophila)
mm10_v2_chr5_-_106696530_106696650	0.0565405	Thra	ENSMUST00000137285.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000124263.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000112695.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000155495.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000135108.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644
mm10_v2_chr14_-_23803304_23803304	0.0559863	Thra	ENSMUST00000179836.1|Kcnma1|ENSMUSG00000063142.7|potassium large conductance calcium-activated channel, subfamily M, alpha member 1 	ENSMUST00000172099.2|Kcnma1|ENSMUSG00000063142.7|potassium large conductance calcium-activated channel, subfamily M, alpha member 1 	ENSMUST00000065788.8|Kcnma1|ENSMUSG00000063142.7|potassium large conductance calcium-activated channel, subfamily M, alpha member 1 	ENSMUST00000179097.1|Kcnma1|ENSMUSG00000063142.7|potassium large conductance calcium-activated channel, subfamily M, alpha member 1 	ENSMUST00000177634.1|Kcnma1|ENSMUSG00000063142.7|potassium large conductance calcium-activated channel, subfamily M, alpha member 1 	ENSMUST00000074983.6|Kcnma1|ENSMUSG00000063142.7|potassium large conductance calcium-activated channel, subfamily M, alpha member 1 	ENSMUST00000163322.2|Kcnma1|ENSMUSG00000063142.7|potassium large conductance calcium-activated channel, subfamily M, alpha member 1 	ENSMUST00000100831.4|Kcnma1|ENSMUSG00000063142.7|potassium large conductance calcium-activated channel, subfamily M, alpha member 1
mm10_v2_chr4_-_126202583_126202698	0.0556238	Thra	ENSMUST00000106142.1|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3 	ENSMUST00000169403.1|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3 	ENSMUST00000130334.1|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3
mm10_v2_chr17_-_27820534_27820572	0.0549672	Thra	ENSMUST00000075076.4|D17Wsu92e|ENSMUSG00000056692.6|DNA segment, Chr 17, Wayne State University 92, expressed 	ENSMUST00000114863.2|D17Wsu92e|ENSMUSG00000056692.6|DNA segment, Chr 17, Wayne State University 92, expressed
mm10_v2_chr4_+_156215920_156215944	0.0547157	Thra	ENSMUST00000105572.1|2310042D19Rik|ENSMUSG00000078486.2|RIKEN cDNA 2310042D19 gene
mm10_v2_chrX_-_8145679_8145707	0.0535877	Thra	ENSMUST00000115619.1|Rbm3|ENSMUSG00000031167.10|RNA binding motif protein 3 	ENSMUST00000115617.3|Rbm3|ENSMUSG00000031167.10|RNA binding motif protein 3 	ENSMUST00000040010.3|Rbm3|ENSMUSG00000031167.10|RNA binding motif protein 3
mm10_v2_chr2_+_121449362_121449393	0.0504993	Thra	ENSMUST00000110615.1|Serf2|ENSMUSG00000074884.6|small EDRK-rich factor 2 	ENSMUST00000099475.5|Serf2|ENSMUSG00000074884.6|small EDRK-rich factor 2
mm10_v2_chr7_+_138846579_138846623	0.050153	Thra	ENSMUST00000155672.1|Ppp2r2d|ENSMUSG00000041769.7|protein phosphatase 2, regulatory subunit B, delta isoform
mm10_v2_chr10_-_13324250_13324318	0.0498238	Thra	ENSMUST00000105543.1|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr2_-_157279519_157279555	0.0494382	Thra	ENSMUST00000143663.1|Mroh8|ENSMUSG00000074627.5|maestro heat-like repeat family member 8
mm10_v2_chr16_-_23520579_23520673	0.0494269	Thra	ENSMUST00000089883.5|Masp1|ENSMUSG00000022887.8|mannan-binding lectin serine peptidase 1
mm10_v2_chr7_+_102267795_102267854	0.0491095	Thra	ENSMUST00000033289.4|Stim1|ENSMUSG00000030987.4|stromal interaction molecule 1
mm10_v2_chr17_+_35016576_35016638	0.0490541	Thra	ENSMUST00000007245.1|Vwa7|ENSMUSG00000007030.2|von Willebrand factor A domain containing 7 	ENSMUST00000172499.1|Vwa7|ENSMUSG00000007030.2|von Willebrand factor A domain containing 7
mm10_v2_chr12_+_82170016_82170173	0.0485589	Thra	ENSMUST00000166429.1|Sipa1l1|ENSMUSG00000042700.9|signal-induced proliferation-associated 1 like 1
mm10_v2_chr17_+_80307396_80307413	0.0485331	Thra	ENSMUST00000068175.5|Arhgef33|ENSMUSG00000054901.5|Rho guanine nucleotide exchange factor (GEF) 33
mm10_v2_chr5_+_138255608_138255725	0.0452053	Thra	ENSMUST00000062067.6|Lamtor4|ENSMUSG00000050552.7|late endosomal/lysosomal adaptor, MAPK and MTOR activator 4
mm10_v2_chr14_+_21500879_21500897	0.0449384	Thra	ENSMUST00000182964.1|Kat6b|ENSMUSG00000021767.10|K(lysine) acetyltransferase 6B
mm10_v2_chr11_-_85139939_85140038	0.0446379	Thra	ENSMUST00000108075.2|Usp32|ENSMUSG00000000804.8|ubiquitin specific peptidase 32
mm10_v2_chr17_-_12992188_12992226	0.0443983	Thra	ENSMUST00000159986.1|Wtap|ENSMUSG00000060475.6|Wilms' tumour 1-associating protein
mm10_v2_chr10_-_62110945_62111060	0.0434944	Thra	ENSMUST00000142821.1|2010107G23Rik|ENSMUSG00000020083.7|RIKEN cDNA 2010107G23 gene 	ENSMUST00000124615.1|2010107G23Rik|ENSMUSG00000020083.7|RIKEN cDNA 2010107G23 gene 	ENSMUST00000064050.4|2010107G23Rik|ENSMUSG00000020083.7|RIKEN cDNA 2010107G23 gene 	ENSMUST00000125704.1|2010107G23Rik|ENSMUSG00000020083.7|RIKEN cDNA 2010107G23 gene 	ENSMUST00000142796.1|2010107G23Rik|ENSMUSG00000020083.7|RIKEN cDNA 2010107G23 gene
mm10_v2_chr2_-_151476153_151476153	0.0431331	Thra	ENSMUST00000080132.2|4921509C19Rik|ENSMUSG00000061525.2|RIKEN cDNA 4921509C19 gene
mm10_v2_chr7_-_100514800_100514960	0.0429854	Thra	ENSMUST00000054923.7|Dnajb13|ENSMUSG00000030708.7|DnaJ (Hsp40) related, subfamily B, member 13
mm10_v2_chr11_+_79660532_79660562	0.0422393	Thra	ENSMUST00000155381.1|Rab11fip4|ENSMUSG00000017639.7|RAB11 family interacting protein 4 (class II)
mm10_v2_chr5_+_72914264_72914304	0.0421585	Thra	ENSMUST00000144843.1|Slain2|ENSMUSG00000036087.12|SLAIN motif family, member 2
mm10_v2_chr11_+_115475645_115475727	0.0419859	Thra	ENSMUST00000035240.6|Armc7|ENSMUSG00000057219.5|armadillo repeat containing 7
mm10_v2_chr11_-_103749815_103749829	0.04181	Thra	ENSMUST00000018630.2|Wnt9b|ENSMUSG00000018486.2|wingless-type MMTV integration site 9B
mm10_v2_chr6_+_49395559_49395635	0.0409745	Thra	ENSMUST00000024171.7|Stk31|ENSMUSG00000023403.8|serine threonine kinase 31 	ENSMUST00000163954.1|Stk31|ENSMUSG00000023403.8|serine threonine kinase 31 	ENSMUST00000172459.1|Stk31|ENSMUSG00000023403.8|serine threonine kinase 31
mm10_v2_chr14_-_79481268_79481449	0.0406148	Thra	ENSMUST00000022601.5|Wbp4|ENSMUSG00000022023.5|WW domain binding protein 4
mm10_v2_chr5_+_35057059_35057096	0.0405368	Thra	ENSMUST00000050709.3|Dok7|ENSMUSG00000044716.6|docking protein 7
mm10_v2_chr15_+_103018936_103018973	0.0404858	Thra	ENSMUST00000165375.1|Hoxc4|ENSMUSG00000075394.3|homeobox C4
mm10_v2_chr10_-_94035705_94035769	0.0400449	Thra	ENSMUST00000118077.1|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein 	ENSMUST00000118205.1|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein 	ENSMUST00000047711.6|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein
mm10_v2_chr12_-_90738438_90738438	0.0400286	Thra	ENSMUST00000082432.3|Dio2|ENSMUSG00000007682.5|deiodinase, iodothyronine, type II
mm10_v2_chr10_+_7681197_7681225	0.0392856	Thra	ENSMUST00000165952.1|Lats1|ENSMUSG00000040021.6|large tumor suppressor
mm10_v2_chr12_-_91849081_91849157	0.0390932	Thra	ENSMUST00000167466.1|Sel1l|ENSMUSG00000020964.8|sel-1 suppressor of lin-12-like (C. elegans) 	ENSMUST00000021347.5|Sel1l|ENSMUSG00000020964.8|sel-1 suppressor of lin-12-like (C. elegans) 	ENSMUST00000178462.1|Sel1l|ENSMUSG00000020964.8|sel-1 suppressor of lin-12-like (C. elegans)
mm10_v2_chr1_+_156035705_156035772	0.0381526	Thra	ENSMUST00000111754.2|Tor1aip2|ENSMUSG00000050565.10|torsin A interacting protein 2 	ENSMUST00000133152.1|Tor1aip2|ENSMUSG00000050565.10|torsin A interacting protein 2
mm10_v2_chr2_+_29965560_29965717	0.0377508	Thra	ENSMUST00000113717.1|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000113719.2|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000100225.2|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000113741.1|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000095083.4|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000046257.7|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1
mm10_v2_chr2_+_157279026_157279064	0.0377428	Thra	ENSMUST00000116380.2|Rpn2|ENSMUSG00000027642.9|ribophorin II
mm10_v2_chr4_-_129227883_129227923	0.0376304	Thra	ENSMUST00000106051.1|C77080|ENSMUSG00000050390.6|expressed sequence C77080
mm10_v2_chr16_+_91485233_91485294	0.0370034	Thra	ENSMUST00000023689.4|Ifnar1|ENSMUSG00000022967.6|interferon (alpha and beta) receptor 1 	ENSMUST00000117748.1|Ifnar1|ENSMUSG00000022967.6|interferon (alpha and beta) receptor 1
mm10_v2_chr12_+_102469123_102469156	0.0365942	Thra	ENSMUST00000179218.1|Golga5|ENSMUSG00000021192.9|golgi autoantigen, golgin subfamily a, 5
mm10_v2_chr17_-_27820445_27820491	0.0358462	Thra	ENSMUST00000114859.1|D17Wsu92e|ENSMUSG00000056692.6|DNA segment, Chr 17, Wayne State University 92, expressed
mm10_v2_chr15_+_92161343_92161366	0.0355149	Thra	ENSMUST00000068378.5|Cntn1|ENSMUSG00000055022.8|contactin 1
mm10_v2_chr18_-_80713062_80713080	0.0354239	Thra	ENSMUST00000170905.1|Nfatc1|ENSMUSG00000033016.9|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1 	ENSMUST00000078049.4|Nfatc1|ENSMUSG00000033016.9|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1
mm10_v2_chr4_-_58912678_58912776	0.0353641	Thra	ENSMUST00000144512.1|AI314180|ENSMUSG00000050812.12|expressed sequence AI314180 	ENSMUST00000102889.3|AI314180|ENSMUSG00000050812.12|expressed sequence AI314180 	ENSMUST00000055822.8|AI314180|ENSMUSG00000050812.12|expressed sequence AI314180
mm10_v2_chr2_+_157279065_157279146	0.0352265	Thra	ENSMUST00000029171.5|Rpn2|ENSMUSG00000027642.9|ribophorin II
mm10_v2_chr7_+_130865835_130865942	0.0335159	Thra	ENSMUST00000075181.4|Plekha1|ENSMUSG00000040268.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 	ENSMUST00000048180.5|Plekha1|ENSMUSG00000040268.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
mm10_v2_chr5_-_24995748_24995759	0.0334979	Thra	ENSMUST00000076306.5|Prkag2|ENSMUSG00000028944.8|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
mm10_v2_chr16_+_32430895_32430978	0.0328913	Thra	ENSMUST00000115137.1|Pcyt1a|ENSMUSG00000005615.8|phosphate cytidylyltransferase 1, choline, alpha isoform 	ENSMUST00000079791.4|Pcyt1a|ENSMUSG00000005615.8|phosphate cytidylyltransferase 1, choline, alpha isoform
mm10_v2_chr19_-_56389877_56390043	0.0316167	Thra	ENSMUST00000166203.1|Nrap|ENSMUSG00000049134.9|nebulin-related anchoring protein 	ENSMUST00000167239.1|Nrap|ENSMUSG00000049134.9|nebulin-related anchoring protein 	ENSMUST00000040711.8|Nrap|ENSMUSG00000049134.9|nebulin-related anchoring protein 	ENSMUST00000095947.4|Nrap|ENSMUSG00000049134.9|nebulin-related anchoring protein 	ENSMUST00000073536.6|Nrap|ENSMUSG00000049134.9|nebulin-related anchoring protein
mm10_v2_chr7_-_35802968_35803007	0.0311804	Thra	ENSMUST00000061586.4|Zfp507|ENSMUSG00000044452.4|zinc finger protein 507
mm10_v2_chr2_+_145785980_145786152	0.0307042	Thra	ENSMUST00000110005.1|Rin2|ENSMUSG00000001768.9|Ras and Rab interactor 2 	ENSMUST00000094480.4|Rin2|ENSMUSG00000001768.9|Ras and Rab interactor 2
mm10_v2_chr4_-_83021102_83021135	0.0307035	Thra	ENSMUST00000071708.5|Frem1|ENSMUSG00000059049.8|Fras1 related extracellular matrix protein 1
mm10_v2_chr12_+_109545390_109545443	0.030021	Thra	ENSMUST00000146701.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3
mm10_v2_chr14_+_55591708_55591785	0.0298611	Thra	ENSMUST00000019443.8|Rnf31|ENSMUSG00000047098.11|ring finger protein 31
mm10_v2_chr4_-_126202757_126202762	0.0296865	Thra	ENSMUST00000080919.5|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3
mm10_v2_chr18_+_42275353_42275392	0.0296639	Thra	ENSMUST00000046972.7|Rbm27|ENSMUSG00000024491.9|RNA binding motif protein 27 	ENSMUST00000091920.5|Rbm27|ENSMUSG00000024491.9|RNA binding motif protein 27
mm10_v2_chr5_-_45857473_45857615	0.029639	Thra	ENSMUST00000016026.7|Lcorl|ENSMUSG00000015882.11|ligand dependent nuclear receptor corepressor-like 	ENSMUST00000067997.6|Lcorl|ENSMUSG00000015882.11|ligand dependent nuclear receptor corepressor-like 	ENSMUST00000045586.6|Lcorl|ENSMUSG00000015882.11|ligand dependent nuclear receptor corepressor-like
mm10_v2_chr12_+_84451485_84451518	0.0288888	Thra	ENSMUST00000137170.1|Lin52|ENSMUSG00000085793.1|lin-52 homolog (C. elegans)
mm10_v2_chr13_+_54192106_54192151	0.0279891	Thra	ENSMUST00000038101.3|Hrh2|ENSMUSG00000034987.3|histamine receptor H2
mm10_v2_chr9_+_107906866_107906918	0.0279606	Thra	ENSMUST00000035203.7|Mst1r|ENSMUSG00000032584.7|macrophage stimulating 1 receptor (c-met-related tyrosine kinase)
mm10_v2_chr4_-_135272798_135272819	0.0279242	Thra	ENSMUST00000037099.8|Clic4|ENSMUSG00000037242.8|chloride intracellular channel 4 (mitochondrial)
mm10_v2_chr4_-_139968026_139968026	0.0277575	Thra	ENSMUST00000105031.2|Klhdc7a|ENSMUSG00000078234.5|kelch domain containing 7A
mm10_v2_chr14_+_32513486_32513548	0.0272389	Thra	ENSMUST00000066807.6|Ercc6|ENSMUSG00000054051.6|excision repair cross-complementing rodent repair deficiency, complementation group 6
mm10_v2_chr5_-_24445254_24445287	0.0262655	Thra	ENSMUST00000030800.6|Fastk|ENSMUSG00000028959.8|Fas-activated serine/threonine kinase
mm10_v2_chr17_-_35910032_35910076	0.0260247	Thra	ENSMUST00000141662.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000056034.6|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000077494.6|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000149277.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000061052.5|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1
mm10_v2_chr1_-_163994767_163994808	0.0257155	Thra	ENSMUST00000097493.3|BC055324|ENSMUSG00000041406.8|cDNA sequence BC055324 	ENSMUST00000045876.6|BC055324|ENSMUSG00000041406.8|cDNA sequence BC055324
mm10_v2_chr1_+_74791516_74791516	0.0238797	Thra	ENSMUST00000006718.8|Wnt10a|ENSMUSG00000026167.8|wingless related MMTV integration site 10a
mm10_v2_chr13_+_46669517_46669545	0.0234386	Thra	ENSMUST00000099547.3|C78339|ENSMUSG00000069237.8|expressed sequence C78339
mm10_v2_chr11_+_67586520_67586546	0.0215073	Thra	ENSMUST00000108682.2|Gas7|ENSMUSG00000033066.9|growth arrest specific 7
mm10_v2_chr17_-_12992227_12992259	0.0213762	Thra	ENSMUST00000007007.7|Wtap|ENSMUSG00000060475.6|Wilms' tumour 1-associating protein
mm10_v2_chr7_+_138846335_138846371	0.0211603	Thra	ENSMUST00000041097.6|Ppp2r2d|ENSMUSG00000041769.7|protein phosphatase 2, regulatory subunit B, delta isoform
mm10_v2_chr14_+_58070547_58070547	0.0207029	Thra	ENSMUST00000165526.1|Fgf9|ENSMUSG00000021974.8|fibroblast growth factor 9
mm10_v2_chr14_+_79481164_79481194	0.0200195	Thra	ENSMUST00000040131.5|Elf1|ENSMUSG00000036461.9|E74-like factor 1
mm10_v2_chr4_+_33310306_33310387	0.0194503	Thra	ENSMUST00000108153.2|Rngtt|ENSMUSG00000028274.11|RNA guanylyltransferase and 5'-phosphatase 	ENSMUST00000029942.7|Rngtt|ENSMUSG00000028274.11|RNA guanylyltransferase and 5'-phosphatase
mm10_v2_chr14_-_20730327_20730327	0.018466	Thra	ENSMUST00000047490.5|Ndst2|ENSMUSG00000039308.5|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2
mm10_v2_chr15_-_78529617_78529636	0.0178252	Thra	ENSMUST00000023075.8|C1qtnf6|ENSMUSG00000022440.8|C1q and tumor necrosis factor related protein 6
mm10_v2_chr5_-_106696819_106696839	0.0177475	Thra	ENSMUST00000127434.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000112696.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000112698.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644
mm10_v2_chr19_-_5986143_5986143	0.0174813	Thra	ENSMUST00000041827.7|Slc22a20|ENSMUSG00000037451.7|solute carrier family 22 (organic anion transporter), member 20
mm10_v2_chrX_+_73716577_73716618	0.0167754	Thra	ENSMUST00000002084.7|Abcd1|ENSMUSG00000031378.8|ATP-binding cassette, sub-family D (ALD), member 1
mm10_v2_chr7_+_28441026_28441064	0.0165534	Thra	ENSMUST00000135686.1|Gmfg|ENSMUSG00000060791.9|glia maturation factor, gamma
mm10_v2_chr8_+_72443874_72443953	0.01608	Thra	ENSMUST00000064853.6|1700030K09Rik|ENSMUSG00000052794.7|RIKEN cDNA 1700030K09 gene 	ENSMUST00000121902.1|1700030K09Rik|ENSMUSG00000052794.7|RIKEN cDNA 1700030K09 gene
mm10_v2_chr5_-_24445166_24445220	0.015162	Thra	ENSMUST00000115043.1|Fastk|ENSMUSG00000028959.8|Fas-activated serine/threonine kinase 	ENSMUST00000115041.1|Fastk|ENSMUSG00000028959.8|Fas-activated serine/threonine kinase
mm10_v2_chr16_+_31663841_31663912	0.0146872	Thra	ENSMUST00000115201.1|Dlg1|ENSMUSG00000022770.10|discs, large homolog 1 (Drosophila)
mm10_v2_chr17_+_85620816_85620843	0.0143063	Thra	ENSMUST00000175898.2|Six3|ENSMUSG00000038805.9|sine oculis-related homeobox 3
mm10_v2_chr10_-_93081596_93081644	0.0141874	Thra	ENSMUST00000168617.1|Gm872|ENSMUSG00000020014.9|RIKEN cDNA 4930485B16 gene 	ENSMUST00000168110.1|Gm872|ENSMUSG00000020014.9|RIKEN cDNA 4930485B16 gene 	ENSMUST00000020200.7|Gm872|ENSMUSG00000020014.9|RIKEN cDNA 4930485B16 gene
mm10_v2_chr16_+_32431020_32431034	0.0137015	Thra	ENSMUST00000104893.2|Pcyt1a|ENSMUSG00000005615.8|phosphate cytidylyltransferase 1, choline, alpha isoform
mm10_v2_chr3_-_95307132_95307181	0.0128409	Thra	ENSMUST00000015846.2|Anxa9|ENSMUSG00000015702.7|annexin A9
mm10_v2_chr9_-_50693799_50693814	0.0115251	Thra	ENSMUST00000120622.1|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1
mm10_v2_chr15_+_102445367_102445403	0.0112555	Thra	ENSMUST00000023809.4|Amhr2|ENSMUSG00000023047.4|anti-Mullerian hormone type 2 receptor
mm10_v2_chr7_+_3290553_3290586	0.0111223	Thra	ENSMUST00000096744.5|Myadm|ENSMUSG00000068566.6|myeloid-associated differentiation marker
mm10_v2_chr11_+_31872100_31872226	0.0110073	Thra	ENSMUST00000020543.6|Cpeb4|ENSMUSG00000020300.8|cytoplasmic polyadenylation element binding protein 4 	ENSMUST00000109412.2|Cpeb4|ENSMUSG00000020300.8|cytoplasmic polyadenylation element binding protein 4
mm10_v2_chr14_+_25459206_25459225	0.0108252	Thra	ENSMUST00000162645.1|Zmiz1|ENSMUSG00000007817.8|zinc finger, MIZ-type containing 1
mm10_v2_chr11_-_3722189_3722222	0.010812	Thra	ENSMUST00000102950.3|Osbp2|ENSMUSG00000020435.11|oxysterol binding protein 2 	ENSMUST00000101632.3|Osbp2|ENSMUSG00000020435.11|oxysterol binding protein 2
mm10_v2_chr5_-_21424664_21424686	0.0105489	Thra	ENSMUST00000115245.1|Ccdc146|ENSMUSG00000064280.7|coiled-coil domain containing 146 	ENSMUST00000030552.5|Ccdc146|ENSMUSG00000064280.7|coiled-coil domain containing 146
mm10_v2_chr16_-_65562686_65562769	0.00967971	Thra	ENSMUST00000004965.6|Chmp2b|ENSMUSG00000004843.6|charged multivesicular body protein 2B
mm10_v2_chr17_+_25188380_25188418	0.00963704	Thra	ENSMUST00000039734.5|Unkl|ENSMUSG00000015127.8|unkempt-like (Drosophila)
mm10_v2_chr3_+_32736990_32737127	0.00834675	Thra	ENSMUST00000127477.1|Ndufb5|ENSMUSG00000027673.6|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5 	ENSMUST00000121778.1|Ndufb5|ENSMUSG00000027673.6|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5 	ENSMUST00000154257.1|Ndufb5|ENSMUSG00000027673.6|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5
mm10_v2_chr15_+_103272893_103272911	0.00778077	Thra	ENSMUST00000100162.3|Copz1|ENSMUSG00000060992.8|coatomer protein complex, subunit zeta 1
mm10_v2_chr2_+_32450444_32450462	0.00766541	Thra	ENSMUST00000048431.2|Naif1|ENSMUSG00000039164.2|nuclear apoptosis inducing factor 1
mm10_v2_chr17_-_66449715_66449759	0.0066913	Thra	ENSMUST00000086693.5|Soga2|ENSMUSG00000052105.10|SOGA family member 2 	ENSMUST00000097291.3|Soga2|ENSMUSG00000052105.10|SOGA family member 2
mm10_v2_chr7_+_30459713_30459745	0.00645461	Thra	ENSMUST00000006825.8|Nphs1|ENSMUSG00000006649.10|nephrosis 1, nephrin
mm10_v2_chr11_+_70764209_70764209	0.00578334	Thra	ENSMUST00000060444.5|Zfp3|ENSMUSG00000043602.5|zinc finger protein 3
mm10_v2_chr9_+_64235201_64235201	0.00401012	Thra	ENSMUST00000039011.3|Uchl4|ENSMUSG00000035337.3|ubiquitin carboxyl-terminal esterase L4
mm10_v2_chr6_-_42539020_42539020	0.00368847	Thra	ENSMUST00000171307.1|Olfr455|ENSMUSG00000071494.4|olfactory receptor 455
mm10_v2_chr17_-_29347902_29347940	0.000865721	Thra	ENSMUST00000095427.4|Mtch1|ENSMUSG00000024012.11|mitochondrial carrier homolog 1 (C. elegans) 	ENSMUST00000118366.1|Mtch1|ENSMUSG00000024012.11|mitochondrial carrier homolog 1 (C. elegans)
mm10_v2_chr1_+_160044374_160044452	0.000796356	Thra	ENSMUST00000163892.1|4930523C07Rik|ENSMUSG00000090394.2|RIKEN cDNA 4930523C07 gene
mm10_v2_chr11_+_97315716_97315908	0.000620448	Thra	ENSMUST00000019026.3|Mrpl45|ENSMUSG00000018882.6|mitochondrial ribosomal protein L45 	ENSMUST00000132168.1|Mrpl45|ENSMUSG00000018882.6|mitochondrial ribosomal protein L45
mm10_v2_chr10_+_80115779_80115824	2.97419e-05	Thra	ENSMUST00000003152.7|Stk11|ENSMUSG00000003068.9|serine/threonine kinase 11
