mm10_v2_chr10_-_45470201_45470260	0.0478593	UAAGACG	ENSMUST00000079390.6|Lin28b|ENSMUSG00000063804.7|lin-28 homolog B (C. elegans)
mm10_v2_chr14_-_31577318_31577383	0.0470838	UAAGACG	ENSMUST00000112027.2|Colq|ENSMUSG00000057606.8|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase
mm10_v2_chr19_+_41482632_41482688	0.0334363	UAAGACG	ENSMUST00000067795.5|Lcor|ENSMUSG00000025019.9|ligand dependent nuclear receptor corepressor
mm10_v2_chr6_+_77242644_77242697	0.0333599	UAAGACG	ENSMUST00000159616.1|Lrrtm1|ENSMUSG00000060780.2|leucine rich repeat transmembrane neuronal 1
mm10_v2_chr11_-_66525964_66525964	0.031864	UAAGACG	ENSMUST00000066679.6|Shisa6|ENSMUSG00000053930.7|shisa homolog 6 (Xenopus laevis)
mm10_v2_chr16_-_22657165_22657178	0.0318639	UAAGACG	ENSMUST00000089925.3|Dgkg|ENSMUSG00000022861.10|diacylglycerol kinase, gamma
mm10_v2_chr18_+_9212856_9212856	0.0286188	UAAGACG	ENSMUST00000041080.5|Fzd8|ENSMUSG00000036904.5|frizzled homolog 8 (Drosophila)
mm10_v2_chrX_-_162159717_162159732	0.0284328	UAAGACG	ENSMUST00000087085.3|Nhs|ENSMUSG00000059493.7|Nance-Horan syndrome (human)
mm10_v2_chr2_-_125782834_125782870	0.0277181	UAAGACG	ENSMUST00000053699.6|Secisbp2l|ENSMUSG00000035093.10|SECIS binding protein 2-like
mm10_v2_chr1_+_74506044_74506105	0.0242829	UAAGACG	ENSMUST00000087215.5|Rqcd1|ENSMUSG00000026174.8|rcd1 (required for cell differentiation) homolog 1 (S. pombe)
mm10_v2_chr5_+_67607873_67607889	0.0239982	UAAGACG	ENSMUST00000087241.5|Shisa3|ENSMUSG00000050010.7|shisa homolog 3 (Xenopus laevis)
mm10_v2_chr7_-_78578308_78578408	0.0238742	UAAGACG	ENSMUST00000039431.7|Ntrk3|ENSMUSG00000059146.6|neurotrophic tyrosine kinase, receptor, type 3
mm10_v2_chr17_-_12992188_12992226	0.0237047	UAAGACG	ENSMUST00000159986.1|Wtap|ENSMUSG00000060475.6|Wilms' tumour 1-associating protein
mm10_v2_chr2_+_82053222_82053311	0.022971	UAAGACG	ENSMUST00000047527.7|Zfp804a|ENSMUSG00000070866.4|zinc finger protein 804A
mm10_v2_chr1_-_54557595_54557698	0.0221823	UAAGACG	ENSMUST00000097739.3|Pgap1|ENSMUSG00000073678.3|post-GPI attachment to proteins 1
mm10_v2_chr11_+_54438188_54438220	0.0218569	UAAGACG	ENSMUST00000046835.7|Fnip1|ENSMUSG00000035992.9|folliculin interacting protein 1
mm10_v2_chr14_-_61439831_61439947	0.0216552	UAAGACG	ENSMUST00000022496.7|Kpna3|ENSMUSG00000021929.8|karyopherin (importin) alpha 3
mm10_v2_chr19_+_21778325_21778363	0.0211663	UAAGACG	ENSMUST00000096194.2|Tmem2|ENSMUSG00000024754.6|transmembrane protein 2 	ENSMUST00000025663.6|Tmem2|ENSMUSG00000024754.6|transmembrane protein 2
mm10_v2_chr15_-_84855093_84855127	0.020772	UAAGACG	ENSMUST00000016768.5|Phf21b|ENSMUSG00000016624.9|PHD finger protein 21B
mm10_v2_chr10_-_58675631_58675654	0.0202701	UAAGACG	ENSMUST00000003312.4|Edar|ENSMUSG00000003227.4|ectodysplasin-A receptor
mm10_v2_chr4_-_87230435_87230477	0.0202594	UAAGACG	ENSMUST00000107157.2|Slc24a2|ENSMUSG00000037996.11|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm10_v2_chr6_-_100287441_100287465	0.0191343	UAAGACG	ENSMUST00000101118.2|Rybp|ENSMUSG00000072872.2|RING1 and YY1 binding protein
mm10_v2_chr6_+_71707561_71707561	0.0187128	UAAGACG	ENSMUST00000121469.1|Reep1|ENSMUSG00000052852.7|receptor accessory protein 1
mm10_v2_chr9_+_45117813_45117881	0.018375	UAAGACG	ENSMUST00000170998.1|Scn2b|ENSMUSG00000070304.5|sodium channel, voltage-gated, type II, beta 	ENSMUST00000093855.3|Scn2b|ENSMUSG00000070304.5|sodium channel, voltage-gated, type II, beta
mm10_v2_chrX_-_164980310_164980375	0.0175514	UAAGACG	ENSMUST00000004715.1|Mospd2|ENSMUSG00000061778.4|motile sperm domain containing 2 	ENSMUST00000112248.2|Mospd2|ENSMUSG00000061778.4|motile sperm domain containing 2
mm10_v2_chr13_+_94875600_94875611	0.0169237	UAAGACG	ENSMUST00000022195.10|Otp|ENSMUSG00000021685.10|orthopedia homolog (Drosophila)
mm10_v2_chr12_-_73047179_73047179	0.0151943	UAAGACG	ENSMUST00000050029.7|Six1|ENSMUSG00000051367.8|sine oculis-related homeobox 1
mm10_v2_chr6_-_54566484_54566491	0.0138029	UAAGACG	ENSMUST00000019268.4|Scrn1|ENSMUSG00000019124.4|secernin 1
mm10_v2_chr17_+_29549783_29549798	0.0137944	UAAGACG	ENSMUST00000048677.7|Tbc1d22b|ENSMUSG00000042203.7|TBC1 domain family, member 22B
mm10_v2_chr12_-_108003594_108003613	0.0134492	UAAGACG	ENSMUST00000066060.4|Bcl11b|ENSMUSG00000048251.9|B cell leukemia/lymphoma 11B
mm10_v2_chr3_+_41555723_41555745	0.0125657	UAAGACG	ENSMUST00000026865.8|Phf17|ENSMUSG00000025764.8|PHD finger protein 17
mm10_v2_chr16_-_15594507_15594531	0.0125202	UAAGACG	ENSMUST00000115776.1|Ube2v2|ENSMUSG00000022674.8|ubiquitin-conjugating enzyme E2 variant 2 	ENSMUST00000115777.3|Ube2v2|ENSMUSG00000022674.8|ubiquitin-conjugating enzyme E2 variant 2
mm10_v2_chr3_+_109340627_109340653	0.0124833	UAAGACG	ENSMUST00000046864.7|Vav3|ENSMUSG00000033721.10|vav 3 oncogene
mm10_v2_chr16_+_44173239_44173270	0.0124338	UAAGACG	ENSMUST00000119746.1|Gm608|ENSMUSG00000068284.8|predicted gene 608
mm10_v2_chr8_-_94012558_94012687	0.0124088	UAAGACG	ENSMUST00000053766.6|Amfr|ENSMUSG00000031751.7|autocrine motility factor receptor
mm10_v2_chr9_-_75409352_75409383	0.0120824	UAAGACG	ENSMUST00000168937.1|Mapk6|ENSMUSG00000042688.10|mitogen-activated protein kinase 6
mm10_v2_chr13_-_48625571_48625594	0.0119706	UAAGACG	ENSMUST00000035824.9|Ptpdc1|ENSMUSG00000038042.9|protein tyrosine phosphatase domain containing 1
mm10_v2_chr9_-_64737623_64737645	0.0117392	UAAGACG	ENSMUST00000169058.1|Rab11a|ENSMUSG00000004771.6|RAB11a, member RAS oncogene family
mm10_v2_chr11_+_44518959_44519000	0.0116575	UAAGACG	ENSMUST00000019333.3|Rnf145|ENSMUSG00000019189.7|ring finger protein 145
mm10_v2_chr14_-_20546512_20546582	0.0112744	UAAGACG	ENSMUST00000022355.4|Ppp3cb|ENSMUSG00000021816.4|protein phosphatase 3, catalytic subunit, beta isoform 	ENSMUST00000161445.1|Ppp3cb|ENSMUSG00000021816.4|protein phosphatase 3, catalytic subunit, beta isoform 	ENSMUST00000159027.1|Ppp3cb|ENSMUSG00000021816.4|protein phosphatase 3, catalytic subunit, beta isoform
mm10_v2_chr13_-_111490111_111490139	0.0111556	UAAGACG	ENSMUST00000047627.7|Gpbp1|ENSMUSG00000032745.11|GC-rich promoter binding protein 1
mm10_v2_chr12_-_91590009_91590056	0.010966	UAAGACG	ENSMUST00000021345.6|Gtf2a1|ENSMUSG00000020962.7|general transcription factor II A, 1
mm10_v2_chr14_-_72709986_72710027	0.0108074	UAAGACG	ENSMUST00000089017.5|Fndc3a|ENSMUSG00000033487.8|fibronectin type III domain containing 3A
mm10_v2_chr1_+_172698046_172698063	0.0105334	UAAGACG	ENSMUST00000038495.3|Crp|ENSMUSG00000037942.4|C-reactive protein, pentraxin-related
mm10_v2_chr15_+_99392882_99392903	0.0104057	UAAGACG	ENSMUST00000023749.8|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr1_+_99772765_99772765	0.00953181	UAAGACG	ENSMUST00000086738.3|Cntnap5b|ENSMUSG00000067028.5|contactin associated protein-like 5B
mm10_v2_chr5_+_129941949_129942113	0.00943961	UAAGACG	ENSMUST00000051758.7|Vkorc1l1|ENSMUSG00000066735.5|vitamin K epoxide reductase complex, subunit 1-like 1 	ENSMUST00000073945.4|Vkorc1l1|ENSMUSG00000066735.5|vitamin K epoxide reductase complex, subunit 1-like 1
mm10_v2_chr3_+_137864573_137864613	0.00935417	UAAGACG	ENSMUST00000174561.1|H2afz|ENSMUSG00000037894.7|H2A histone family, member Z 	ENSMUST00000173790.1|H2afz|ENSMUSG00000037894.7|H2A histone family, member Z
mm10_v2_chr11_-_60220550_60220632	0.00929989	UAAGACG	ENSMUST00000020846.1|Srebf1|ENSMUSG00000020538.9|sterol regulatory element binding transcription factor 1
mm10_v2_chr1_+_82586942_82586988	0.00923981	UAAGACG	ENSMUST00000113457.2|Col4a3|ENSMUSG00000079465.2|collagen, type IV, alpha 3
mm10_v2_chr7_-_66689589_66689603	0.00921217	UAAGACG	ENSMUST00000124899.1|Asb7|ENSMUSG00000030509.10|ankyrin repeat and SOCS box-containing 7
mm10_v2_chr3_-_116424007_116424032	0.00919801	UAAGACG	ENSMUST00000090464.4|Cdc14a|ENSMUSG00000033502.8|CDC14 cell division cycle 14A
mm10_v2_chr1_-_69685937_69685966	0.00892638	UAAGACG	ENSMUST00000027146.2|Ikzf2|ENSMUSG00000025997.7|IKAROS family zinc finger 2
mm10_v2_chr10_+_95940663_95940703	0.008434	UAAGACG	ENSMUST00000053484.6|Eea1|ENSMUSG00000036499.8|early endosome antigen 1
mm10_v2_chr17_-_51832666_51832678	0.00829181	UAAGACG	ENSMUST00000144331.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr18_+_32163073_32163115	0.00805641	UAAGACG	ENSMUST00000096575.3|Map3k2|ENSMUSG00000024383.8|mitogen-activated protein kinase kinase kinase 2
mm10_v2_chr15_+_58415456_58415512	0.00801989	UAAGACG	ENSMUST00000037270.3|D15Ertd621e|ENSMUSG00000037119.3|DNA segment, Chr 15, ERATO Doi 621, expressed
mm10_v2_chr1_-_105356658_105356714	0.00775404	UAAGACG	ENSMUST00000058688.5|Rnf152|ENSMUSG00000047496.5|ring finger protein 152 	ENSMUST00000172299.1|Rnf152|ENSMUSG00000047496.5|ring finger protein 152
mm10_v2_chr17_-_63499983_63500075	0.00706171	UAAGACG	ENSMUST00000024761.6|Fbxl17|ENSMUSG00000023965.7|F-box and leucine-rich repeat protein 17
mm10_v2_chr19_-_32712287_32712336	0.00678531	UAAGACG	ENSMUST00000070210.4|Atad1|ENSMUSG00000013662.5|ATPase family, AAA domain containing 1
mm10_v2_chr8_+_61224162_61224174	0.00676657	UAAGACG	ENSMUST00000034060.5|Sh3rf1|ENSMUSG00000031642.8|SH3 domain containing ring finger 1
mm10_v2_chr18_+_38250240_38250287	0.00651666	UAAGACG	ENSMUST00000025314.5|0610009O20Rik|ENSMUSG00000024442.5|RIKEN cDNA 0610009O20 gene
mm10_v2_chr14_-_63245219_63245271	0.00651408	UAAGACG	ENSMUST00000118022.1|Gata4|ENSMUSG00000021944.9|GATA binding protein 4 	ENSMUST00000067417.3|Gata4|ENSMUSG00000021944.9|GATA binding protein 4
mm10_v2_chr16_+_23107754_23107761	0.00637005	UAAGACG	ENSMUST00000077605.5|Eif4a2|ENSMUSG00000022884.8|eukaryotic translation initiation factor 4A2 	ENSMUST00000115341.3|Eif4a2|ENSMUSG00000022884.8|eukaryotic translation initiation factor 4A2
mm10_v2_chr4_-_110287479_110287534	0.00611378	UAAGACG	ENSMUST00000106598.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) 	ENSMUST00000102723.4|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) 	ENSMUST00000153906.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr2_-_37647199_37647285	0.00608016	UAAGACG	ENSMUST00000028279.3|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr18_-_16809233_16809324	0.00602415	UAAGACG	ENSMUST00000025166.7|Cdh2|ENSMUSG00000024304.8|cadherin 2
mm10_v2_chr4_-_41314877_41314889	0.00584425	UAAGACG	ENSMUST00000030145.8|Dcaf12|ENSMUSG00000028436.8|DDB1 and CUL4 associated factor 12
mm10_v2_chr1_+_191906743_191906767	0.00572167	UAAGACG	ENSMUST00000044954.6|Slc30a1|ENSMUSG00000037434.7|solute carrier family 30 (zinc transporter), member 1
mm10_v2_chr15_-_93275151_93275178	0.00509593	UAAGACG	ENSMUST00000057896.4|Gxylt1|ENSMUSG00000036197.9|glucoside xylosyltransferase 1 	ENSMUST00000049484.6|Gxylt1|ENSMUSG00000036197.9|glucoside xylosyltransferase 1
mm10_v2_chr12_+_32378692_32378789	0.00449148	UAAGACG	ENSMUST00000172332.2|Ccdc71l|ENSMUSG00000090946.2|coiled-coil domain containing 71 like
mm10_v2_chr6_-_134566913_134566995	0.00376108	UAAGACG	ENSMUST00000032322.8|Lrp6|ENSMUSG00000030201.9|low density lipoprotein receptor-related protein 6
mm10_v2_chr17_-_6317474_6317517	0.00360349	UAAGACG	ENSMUST00000169415.1|Dynlt1a|ENSMUSG00000092074.1|dynein light chain Tctex-type 1A
mm10_v2_chr16_+_17233560_17233664	0.00344431	UAAGACG	ENSMUST00000090190.5|Hic2|ENSMUSG00000050240.8|hypermethylated in cancer 2 	ENSMUST00000115698.2|Hic2|ENSMUSG00000050240.8|hypermethylated in cancer 2
mm10_v2_chr7_-_111082997_111083037	0.0033691	UAAGACG	ENSMUST00000161051.1|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2 	ENSMUST00000160132.1|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2 	ENSMUST00000106666.3|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2 	ENSMUST00000162415.1|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2
mm10_v2_chr11_-_97575210_97575236	0.00329256	UAAGACG	ENSMUST00000107596.2|Srcin1|ENSMUSG00000038453.9|SRC kinase signaling inhibitor 1
mm10_v2_chr6_+_38433913_38433965	0.00317978	UAAGACG	ENSMUST00000160583.1|Ubn2|ENSMUSG00000038538.11|ubinuclein 2
mm10_v2_chr2_-_73892530_73892555	0.00300569	UAAGACG	ENSMUST00000136958.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000112010.2|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000128531.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000112017.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2
mm10_v2_chr10_-_118868903_118868903	0.00298302	UAAGACG	ENSMUST00000004281.8|Dyrk2|ENSMUSG00000028630.8|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm10_v2_chr12_-_69681795_69681869	0.00270021	UAAGACG	ENSMUST00000183277.1|Sos2|ENSMUSG00000034801.7|son of sevenless homolog 2 (Drosophila) 	ENSMUST00000035773.7|Sos2|ENSMUSG00000034801.7|son of sevenless homolog 2 (Drosophila)
mm10_v2_chr9_-_72111827_72111895	0.00242025	UAAGACG	ENSMUST00000183404.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000184783.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr11_+_94327984_94328029	0.00241485	UAAGACG	ENSMUST00000107818.2|Ankrd40|ENSMUSG00000020864.7|ankyrin repeat domain 40 	ENSMUST00000051221.6|Ankrd40|ENSMUSG00000020864.7|ankyrin repeat domain 40
mm10_v2_chr2_+_122028544_122028563	0.00210048	UAAGACG	ENSMUST00000028668.7|Eif3j1|ENSMUSG00000027236.8|eukaryotic translation initiation factor 3, subunit J1
mm10_v2_chr6_-_39206782_39206831	0.00207503	UAAGACG	ENSMUST00000002305.8|Jhdm1d|ENSMUSG00000042599.8|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm10_v2_chr18_+_34220978_34221020	0.00195043	UAAGACG	ENSMUST00000079362.5|Apc|ENSMUSG00000005871.8|adenomatosis polyposis coli 	ENSMUST00000115781.3|Apc|ENSMUSG00000005871.8|adenomatosis polyposis coli
mm10_v2_chr4_-_126429501_126429556	0.0019304	UAAGACG	ENSMUST00000069097.6|Ago3|ENSMUSG00000028842.9|argonaute RISC catalytic subunit 3
mm10_v2_chr2_+_160645881_160645896	0.00180231	UAAGACG	ENSMUST00000109468.2|Top1|ENSMUSG00000070544.6|topoisomerase (DNA) I
mm10_v2_chr4_+_116720920_116721004	0.00168739	UAAGACG	ENSMUST00000045542.6|Tesk2|ENSMUSG00000033985.11|testis-specific kinase 2 	ENSMUST00000106459.1|Tesk2|ENSMUSG00000033985.11|testis-specific kinase 2
mm10_v2_chr14_-_66868572_66868688	0.00156024	UAAGACG	ENSMUST00000022629.8|Dpysl2|ENSMUSG00000022048.8|dihydropyrimidinase-like 2
mm10_v2_chr18_+_53176345_53176376	0.00153108	UAAGACG	ENSMUST00000037850.5|Snx2|ENSMUSG00000034484.7|sorting nexin 2
mm10_v2_chr4_-_56865135_56865208	0.00149146	UAAGACG	ENSMUST00000107612.2|Ctnnal1|ENSMUSG00000038816.8|catenin (cadherin associated protein), alpha-like 1 	ENSMUST00000045142.8|Ctnnal1|ENSMUSG00000038816.8|catenin (cadherin associated protein), alpha-like 1
mm10_v2_chr1_-_119837613_119837673	0.00126125	UAAGACG	ENSMUST00000064091.5|Ptpn4|ENSMUSG00000026384.7|protein tyrosine phosphatase, non-receptor type 4
mm10_v2_chr3_+_89520152_89520175	0.00114052	UAAGACG	ENSMUST00000000811.7|Kcnn3|ENSMUSG00000000794.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm10_v2_chr3_+_157947414_157947510	0.000989327	UAAGACG	ENSMUST00000164582.1|Ankrd13c|ENSMUSG00000039988.8|ankyrin repeat domain 13c 	ENSMUST00000040787.8|Ankrd13c|ENSMUSG00000039988.8|ankyrin repeat domain 13c
mm10_v2_chr13_-_43480973_43481005	0.000865872	UAAGACG	ENSMUST00000144326.2|Ranbp9|ENSMUSG00000038546.8|RAN binding protein 9
mm10_v2_chr17_+_6601671_6601671	0.00024543	UAAGACG	ENSMUST00000092966.4|Dynlt1c|ENSMUSG00000000579.8|dynein light chain Tctex-type 1C
mm10_v2_chr8_-_8690493_8690538	6.72258e-05	UAAGACG	ENSMUST00000048545.8|Arglu1|ENSMUSG00000040459.10|arginine and glutamate rich 1
mm10_v2_chr4_-_139131058_139131113	2.65969e-05	UAAGACG	ENSMUST00000143971.1|Minos1|ENSMUSG00000050608.5|mitochondrial inner membrane organizing system 1
