mm10_v2_chr4_+_102254993_102255003	0.348071	UCACAUU	ENSMUST00000106908.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr2_+_129592914_129592940	0.201011	UCACAUU	ENSMUST00000103203.1|Sirpa|ENSMUSG00000037902.12|signal-regulatory protein alpha
mm10_v2_chr2_-_144270852_144270906	0.195275	UCACAUU	ENSMUST00000110030.3|Snx5|ENSMUSG00000027423.9|sorting nexin 5
mm10_v2_chr1_-_124045523_124045571	0.190085	UCACAUU	ENSMUST00000112606.1|Dpp10|ENSMUSG00000036815.10|dipeptidylpeptidase 10
mm10_v2_chr5_-_131616599_131616611	0.183657	UCACAUU	ENSMUST00000161804.1|Auts2|ENSMUSG00000029673.11|autism susceptibility candidate 2
mm10_v2_chr8_-_90348343_90348386	0.175072	UCACAUU	ENSMUST00000109621.3|Tox3|ENSMUSG00000043668.7|TOX high mobility group box family member 3
mm10_v2_chr1_+_143640664_143640751	0.173736	UCACAUU	ENSMUST00000038252.2|B3galt2|ENSMUSG00000033849.2|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2
mm10_v2_chr17_-_51832666_51832678	0.1698	UCACAUU	ENSMUST00000144331.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr19_+_54045182_54045244	0.157719	UCACAUU	ENSMUST00000036700.5|Adra2a|ENSMUSG00000033717.5|adrenergic receptor, alpha 2a
mm10_v2_chr8_+_82863351_82863397	0.15246	UCACAUU	ENSMUST00000078525.5|Rnf150|ENSMUSG00000047747.9|ring finger protein 150
mm10_v2_chr1_+_192190771_192190821	0.147429	UCACAUU	ENSMUST00000078470.5|Kcnh1|ENSMUSG00000058248.6|potassium voltage-gated channel, subfamily H (eag-related), member 1 	ENSMUST00000110844.1|Kcnh1|ENSMUSG00000058248.6|potassium voltage-gated channel, subfamily H (eag-related), member 1
mm10_v2_chr6_-_52012476_52012551	0.130789	UCACAUU	ENSMUST00000078214.5|Skap2|ENSMUSG00000059182.5|src family associated phosphoprotein 2
mm10_v2_chr8_+_13159135_13159168	0.123742	UCACAUU	ENSMUST00000033824.6|Lamp1|ENSMUSG00000031447.6|lysosomal-associated membrane protein 1
mm10_v2_chr13_+_104287855_104287882	0.120375	UCACAUU	ENSMUST00000065766.6|Adamts6|ENSMUSG00000046169.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6
mm10_v2_chr2_+_52038005_52038020	0.120108	UCACAUU	ENSMUST00000065927.5|Tnfaip6|ENSMUSG00000053475.5|tumor necrosis factor alpha induced protein 6
mm10_v2_chr3_+_138065052_138065078	0.119195	UCACAUU	ENSMUST00000163080.2|1110002E22Rik|ENSMUSG00000090066.2|RIKEN cDNA 1110002E22 gene
mm10_v2_chr8_+_105636509_105636589	0.116255	UCACAUU	ENSMUST00000005841.9|Ctcf|ENSMUSG00000005698.9|CCCTC-binding factor
mm10_v2_chr9_+_71215779_71215792	0.115675	UCACAUU	ENSMUST00000034723.5|Aldh1a2|ENSMUSG00000013584.5|aldehyde dehydrogenase family 1, subfamily A2
mm10_v2_chr1_-_174921813_174921827	0.107326	UCACAUU	ENSMUST00000055294.3|Grem2|ENSMUSG00000050069.3|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)
mm10_v2_chr15_-_96642883_96642984	0.106703	UCACAUU	ENSMUST00000088452.4|Slc38a1|ENSMUSG00000023169.8|solute carrier family 38, member 1
mm10_v2_chr13_-_52530827_52530841	0.103152	UCACAUU	ENSMUST00000057442.6|Diras2|ENSMUSG00000047842.6|DIRAS family, GTP-binding RAS-like 2
mm10_v2_chr11_+_6546875_6546898	0.10241	UCACAUU	ENSMUST00000000388.8|Ccm2|ENSMUSG00000000378.9|cerebral cavernous malformation 2
mm10_v2_chr4_-_132884509_132884523	0.100867	UCACAUU	ENSMUST00000030698.4|Stx12|ENSMUSG00000028879.4|syntaxin 12
mm10_v2_chr10_+_53596936_53597004	0.0998441	UCACAUU	ENSMUST00000020004.6|Asf1a|ENSMUSG00000019857.6|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)
mm10_v2_chrX_-_143827391_143827414	0.0986341	UCACAUU	ENSMUST00000087316.5|Capn6|ENSMUSG00000067276.5|calpain 6
mm10_v2_chr19_+_53529100_53529109	0.0964533	UCACAUU	ENSMUST00000038287.6|Dusp5|ENSMUSG00000034765.6|dual specificity phosphatase 5
mm10_v2_chr14_+_14703025_14703073	0.0949846	UCACAUU	ENSMUST00000057015.6|Slc4a7|ENSMUSG00000021733.9|solute carrier family 4, sodium bicarbonate cotransporter, member 7
mm10_v2_chr2_+_118663235_118663309	0.0931493	UCACAUU	ENSMUST00000099557.3|Pak6|ENSMUSG00000074923.4|p21 protein (Cdc42/Rac)-activated kinase 6
mm10_v2_chr3_+_3508024_3508069	0.0919509	UCACAUU	ENSMUST00000108393.1|Hnf4g|ENSMUSG00000017688.8|hepatocyte nuclear factor 4, gamma 	ENSMUST00000017832.8|Hnf4g|ENSMUSG00000017688.8|hepatocyte nuclear factor 4, gamma
mm10_v2_chr4_-_58553311_58553357	0.0909187	UCACAUU	ENSMUST00000107571.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000055018.4|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr1_+_177444653_177444669	0.0895469	UCACAUU	ENSMUST00000094276.3|Zbtb18|ENSMUSG00000063659.6|zinc finger and BTB domain containing 18
mm10_v2_chr7_+_91090697_91090727	0.0890501	UCACAUU	ENSMUST00000107196.2|Dlg2|ENSMUSG00000052572.9|discs, large homolog 2 (Drosophila)
mm10_v2_chr16_-_22163299_22163299	0.0860625	UCACAUU	ENSMUST00000100052.4|Igf2bp2|ENSMUSG00000033581.10|insulin-like growth factor 2 mRNA binding protein 2
mm10_v2_chrX_+_160390684_160390730	0.0860361	UCACAUU	ENSMUST00000112408.2|Gpr64|ENSMUSG00000031298.9|G protein-coupled receptor 64 	ENSMUST00000112402.1|Gpr64|ENSMUSG00000031298.9|G protein-coupled receptor 64 	ENSMUST00000112401.1|Gpr64|ENSMUSG00000031298.9|G protein-coupled receptor 64 	ENSMUST00000112400.1|Gpr64|ENSMUSG00000031298.9|G protein-coupled receptor 64 	ENSMUST00000112405.2|Gpr64|ENSMUSG00000031298.9|G protein-coupled receptor 64 	ENSMUST00000112404.2|Gpr64|ENSMUSG00000031298.9|G protein-coupled receptor 64 	ENSMUST00000146805.1|Gpr64|ENSMUSG00000031298.9|G protein-coupled receptor 64
mm10_v2_chr6_-_4086914_4086972	0.0855028	UCACAUU	ENSMUST00000049166.4|Bet1|ENSMUSG00000032757.4|blocked early in transport 1 homolog (S. cerevisiae)
mm10_v2_chr3_-_122619663_122619680	0.085035	UCACAUU	ENSMUST00000162409.1|Fnbp1l|ENSMUSG00000039735.9|formin binding protein 1-like
mm10_v2_chr1_+_53297070_53297095	0.0841522	UCACAUU	ENSMUST00000027266.3|Ormdl1|ENSMUSG00000026097.3|ORM1-like 1 (S. cerevisiae)
mm10_v2_chr12_-_11436607_11436649	0.0832812	UCACAUU	ENSMUST00000072299.5|Vsnl1|ENSMUSG00000054459.6|visinin-like 1
mm10_v2_chr19_+_46131888_46131904	0.0825764	UCACAUU	ENSMUST00000043739.3|Elovl3|ENSMUSG00000038754.3|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3
mm10_v2_chrX_-_48454152_48454193	0.0799448	UCACAUU	ENSMUST00000114958.1|Elf4|ENSMUSG00000031103.6|E74-like factor 4 (ets domain transcription factor)
mm10_v2_chr8_-_111876661_111876725	0.0799196	UCACAUU	ENSMUST00000034431.1|Tmem170|ENSMUSG00000031953.1|transmembrane protein 170
mm10_v2_chr11_+_82045705_82045721	0.0788299	UCACAUU	ENSMUST00000021011.2|Ccl7|ENSMUSG00000035373.2|chemokine (C-C motif) ligand 7
mm10_v2_chr18_+_36560581_36560620	0.0775583	UCACAUU	ENSMUST00000155329.2|Ankhd1|ENSMUSG00000024483.12|ankyrin repeat and KH domain containing 1
mm10_v2_chr15_-_84855093_84855127	0.0764029	UCACAUU	ENSMUST00000016768.5|Phf21b|ENSMUSG00000016624.9|PHD finger protein 21B
mm10_v2_chr16_-_42340595_42340651	0.0761269	UCACAUU	ENSMUST00000102817.4|Gap43|ENSMUSG00000047261.9|growth associated protein 43
mm10_v2_chr6_-_3968357_3968381	0.0754816	UCACAUU	ENSMUST00000031674.8|Tfpi2|ENSMUSG00000029664.8|tissue factor pathway inhibitor 2
mm10_v2_chr9_-_121495678_121495689	0.0750005	UCACAUU	ENSMUST00000035120.4|Cck|ENSMUSG00000032532.6|cholecystokinin
mm10_v2_chr2_-_153529941_153529985	0.0746165	UCACAUU	ENSMUST00000035346.7|8430427H17Rik|ENSMUSG00000061411.6|RIKEN cDNA 8430427H17 gene
mm10_v2_chr14_-_105896819_105896819	0.0736469	UCACAUU	ENSMUST00000022709.4|Spry2|ENSMUSG00000022114.4|sprouty homolog 2 (Drosophila)
mm10_v2_chr5_-_51553896_51553921	0.0733028	UCACAUU	ENSMUST00000132734.1|Ppargc1a|ENSMUSG00000029167.7|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm10_v2_chr6_+_8259379_8259460	0.0719675	UCACAUU	ENSMUST00000162034.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039 	ENSMUST00000160705.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039 	ENSMUST00000159433.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039
mm10_v2_chr10_-_84440591_84440604	0.0718705	UCACAUU	ENSMUST00000020220.8|Nuak1|ENSMUSG00000020032.8|NUAK family, SNF1-like kinase, 1
mm10_v2_chr14_+_65358661_65358691	0.0718288	UCACAUU	ENSMUST00000066994.6|Zfp395|ENSMUSG00000034522.9|zinc finger protein 395
mm10_v2_chr16_+_24393350_24393428	0.0711163	UCACAUU	ENSMUST00000038053.6|Lpp|ENSMUSG00000033306.8|LIM domain containing preferred translocation partner in lipoma
mm10_v2_chr8_+_35375719_35375766	0.0696064	UCACAUU	ENSMUST00000070481.6|Ppp1r3b|ENSMUSG00000046794.8|protein phosphatase 1, regulatory (inhibitor) subunit 3B
mm10_v2_chr6_+_143167210_143167267	0.0683097	UCACAUU	ENSMUST00000032413.4|Etnk1|ENSMUSG00000030275.4|ethanolamine kinase 1
mm10_v2_chr9_+_65141154_65141198	0.0677379	UCACAUU	ENSMUST00000034961.4|Igdcc3|ENSMUSG00000032394.5|immunoglobulin superfamily, DCC subclass, member 3
mm10_v2_chr2_-_70825726_70825820	0.0666215	UCACAUU	ENSMUST00000038584.8|Tlk1|ENSMUSG00000041997.10|tousled-like kinase 1
mm10_v2_chr12_+_82170016_82170173	0.0666004	UCACAUU	ENSMUST00000166429.1|Sipa1l1|ENSMUSG00000042700.9|signal-induced proliferation-associated 1 like 1
mm10_v2_chr13_+_94057757_94057838	0.0655267	UCACAUU	ENSMUST00000054274.1|Lhfpl2|ENSMUSG00000045312.5|lipoma HMGIC fusion partner-like 2
mm10_v2_chr16_+_52031549_52031570	0.0642608	UCACAUU	ENSMUST00000114471.1|Cblb|ENSMUSG00000022637.10|Casitas B-lineage lymphoma b
mm10_v2_chr10_-_83534130_83534141	0.0637133	UCACAUU	ENSMUST00000020497.7|Aldh1l2|ENSMUSG00000020256.8|aldehyde dehydrogenase 1 family, member L2
mm10_v2_chr10_-_122047293_122047322	0.0635724	UCACAUU	ENSMUST00000020322.5|Srgap1|ENSMUSG00000020121.9|SLIT-ROBO Rho GTPase activating protein 1 	ENSMUST00000081688.6|Srgap1|ENSMUSG00000020121.9|SLIT-ROBO Rho GTPase activating protein 1
mm10_v2_chrX_-_20291776_20291834	0.0634399	UCACAUU	ENSMUST00000072451.4|Slc9a7|ENSMUSG00000037341.7|solute carrier family 9 (sodium/hydrogen exchanger), member 7
mm10_v2_chr6_-_120038647_120038699	0.0606313	UCACAUU	ENSMUST00000088646.5|Wnk1|ENSMUSG00000045962.10|WNK lysine deficient protein kinase 1 	ENSMUST00000177761.1|Wnk1|ENSMUSG00000045962.10|WNK lysine deficient protein kinase 1 	ENSMUST00000088644.6|Wnk1|ENSMUSG00000045962.10|WNK lysine deficient protein kinase 1 	ENSMUST00000060043.6|Wnk1|ENSMUSG00000045962.10|WNK lysine deficient protein kinase 1
mm10_v2_chr6_-_112947246_112947277	0.0602597	UCACAUU	ENSMUST00000088373.4|Srgap3|ENSMUSG00000030257.10|SLIT-ROBO Rho GTPase activating protein 3
mm10_v2_chr14_-_122465677_122465677	0.0597216	UCACAUU	ENSMUST00000039118.6|Zic5|ENSMUSG00000041703.7|zinc finger protein of the cerebellum 5
mm10_v2_chr11_-_100822525_100822576	0.0592017	UCACAUU	ENSMUST00000107358.2|Stat5b|ENSMUSG00000020919.5|signal transducer and activator of transcription 5B
mm10_v2_chr2_-_58357752_58357895	0.0583499	UCACAUU	ENSMUST00000112608.2|Acvr1c|ENSMUSG00000026834.7|activin A receptor, type IC 	ENSMUST00000112607.2|Acvr1c|ENSMUSG00000026834.7|activin A receptor, type IC 	ENSMUST00000028178.7|Acvr1c|ENSMUSG00000026834.7|activin A receptor, type IC
mm10_v2_chr11_-_116086929_116086995	0.0582466	UCACAUU	ENSMUST00000074628.6|Wbp2|ENSMUSG00000034341.11|WW domain binding protein 2 	ENSMUST00000106444.3|Wbp2|ENSMUSG00000034341.11|WW domain binding protein 2
mm10_v2_chr17_-_63499983_63500075	0.0567994	UCACAUU	ENSMUST00000024761.6|Fbxl17|ENSMUSG00000023965.7|F-box and leucine-rich repeat protein 17
mm10_v2_chr9_+_107563246_107563285	0.0564176	UCACAUU	ENSMUST00000010198.3|Tusc2|ENSMUSG00000010054.3|tumor suppressor candidate 2
mm10_v2_chr9_-_91365756_91365774	0.0563458	UCACAUU	ENSMUST00000034927.6|Zic1|ENSMUSG00000032368.8|zinc finger protein of the cerebellum 1
mm10_v2_chrX_-_75578188_75578247	0.0559286	UCACAUU	ENSMUST00000033545.5|Rab39b|ENSMUSG00000031202.5|RAB39B, member RAS oncogene family
mm10_v2_chr12_+_78748947_78748971	0.0558362	UCACAUU	ENSMUST00000082024.5|Mpp5|ENSMUSG00000021112.8|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
mm10_v2_chr7_+_123123870_123123901	0.0556216	UCACAUU	ENSMUST00000094053.5|Tnrc6a|ENSMUSG00000052707.7|trinucleotide repeat containing 6a
mm10_v2_chr3_-_95818941_95818990	0.05523	UCACAUU	ENSMUST00000090791.3|Rprd2|ENSMUSG00000028106.9|regulation of nuclear pre-mRNA domain containing 2
mm10_v2_chr11_+_87664274_87664274	0.0548307	UCACAUU	ENSMUST00000092800.5|Rnf43|ENSMUSG00000034177.9|ring finger protein 43
mm10_v2_chr19_-_47464406_47464450	0.0546364	UCACAUU	ENSMUST00000111800.2|Sh3pxd2a|ENSMUSG00000053617.5|SH3 and PX domains 2A 	ENSMUST00000081619.2|Sh3pxd2a|ENSMUSG00000053617.5|SH3 and PX domains 2A
mm10_v2_chr6_+_97807014_97807067	0.0536039	UCACAUU	ENSMUST00000043637.7|Mitf|ENSMUSG00000035158.9|microphthalmia-associated transcription factor
mm10_v2_chr5_+_129941949_129942113	0.0519889	UCACAUU	ENSMUST00000051758.7|Vkorc1l1|ENSMUSG00000066735.5|vitamin K epoxide reductase complex, subunit 1-like 1 	ENSMUST00000073945.4|Vkorc1l1|ENSMUSG00000066735.5|vitamin K epoxide reductase complex, subunit 1-like 1
mm10_v2_chr6_+_108783059_108783116	0.0513306	UCACAUU	ENSMUST00000032196.6|Arl8b|ENSMUSG00000030105.6|ADP-ribosylation factor-like 8B
mm10_v2_chr3_-_86548268_86548290	0.0509082	UCACAUU	ENSMUST00000077524.3|Mab21l2|ENSMUSG00000057777.3|mab-21-like 2 (C. elegans)
mm10_v2_chr9_-_85327110_85327128	0.0492139	UCACAUU	ENSMUST00000034802.8|Fam46a|ENSMUSG00000032265.8|family with sequence similarity 46, member A
mm10_v2_chr2_-_64097994_64098023	0.0487072	UCACAUU	ENSMUST00000131615.2|Fign|ENSMUSG00000075324.7|fidgetin
mm10_v2_chr14_+_74640840_74640887	0.0486204	UCACAUU	ENSMUST00000036653.3|Htr2a|ENSMUSG00000034997.4|5-hydroxytryptamine (serotonin) receptor 2A
mm10_v2_chrX_+_42067836_42067872	0.0464101	UCACAUU	ENSMUST00000115094.1|Xiap|ENSMUSG00000025860.8|X-linked inhibitor of apoptosis
mm10_v2_chr14_+_105258573_105258629	0.0463181	UCACAUU	ENSMUST00000181969.1|Ndfip2|ENSMUSG00000053253.10|Nedd4 family interacting protein 2
mm10_v2_chr13_+_9276477_9276620	0.0457598	UCACAUU	ENSMUST00000174552.1|Dip2c|ENSMUSG00000048264.9|DIP2 disco-interacting protein 2 homolog C (Drosophila)
mm10_v2_chr10_-_86705485_86705509	0.0457584	UCACAUU	ENSMUST00000020238.7|Hsp90b1|ENSMUSG00000020048.7|heat shock protein 90, beta (Grp94), member 1
mm10_v2_chr9_+_68653761_68653786	0.0454886	UCACAUU	ENSMUST00000034766.7|Rora|ENSMUSG00000032238.11|RAR-related orphan receptor alpha
mm10_v2_chr4_-_133967893_133967951	0.0452827	UCACAUU	ENSMUST00000100472.3|Hmgn2|ENSMUSG00000003038.9|high mobility group nucleosomal binding domain 2 	ENSMUST00000136327.1|Hmgn2|ENSMUSG00000003038.9|high mobility group nucleosomal binding domain 2
mm10_v2_chr3_-_125938537_125938605	0.0446746	UCACAUU	ENSMUST00000057944.7|Ugt8a|ENSMUSG00000032854.8|UDP galactosyltransferase 8A
mm10_v2_chr11_+_117115195_117115257	0.0440207	UCACAUU	ENSMUST00000103026.3|Sec14l1|ENSMUSG00000020823.10|SEC14-like 1 (S. cerevisiae) 	ENSMUST00000090433.5|Sec14l1|ENSMUSG00000020823.10|SEC14-like 1 (S. cerevisiae)
mm10_v2_chr13_-_103920508_103920572	0.0434821	UCACAUU	ENSMUST00000053927.5|Erbb2ip|ENSMUSG00000021709.8|Erbb2 interacting protein 	ENSMUST00000091269.4|Erbb2ip|ENSMUSG00000021709.8|Erbb2 interacting protein 	ENSMUST00000022222.5|Erbb2ip|ENSMUSG00000021709.8|Erbb2 interacting protein
mm10_v2_chr3_-_19311269_19311322	0.0433428	UCACAUU	ENSMUST00000099195.3|Pde7a|ENSMUSG00000069094.6|phosphodiesterase 7A
mm10_v2_chr14_+_31019125_31019157	0.0429386	UCACAUU	ENSMUST00000112095.1|Pbrm1|ENSMUSG00000042323.10|polybromo 1 	ENSMUST00000112098.3|Pbrm1|ENSMUSG00000042323.10|polybromo 1 	ENSMUST00000112106.1|Pbrm1|ENSMUSG00000042323.10|polybromo 1 	ENSMUST00000146325.1|Pbrm1|ENSMUSG00000042323.10|polybromo 1
mm10_v2_chr3_+_96181151_96181167	0.0428147	UCACAUU	ENSMUST00000035371.8|Sv2a|ENSMUSG00000038486.8|synaptic vesicle glycoprotein 2 a
mm10_v2_chr3_+_59006978_59006978	0.0427586	UCACAUU	ENSMUST00000040325.7|Med12l|ENSMUSG00000056476.7|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like 	ENSMUST00000164225.1|Med12l|ENSMUSG00000056476.7|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like 	ENSMUST00000040846.8|Med12l|ENSMUSG00000056476.7|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like 	ENSMUST00000029393.8|Med12l|ENSMUSG00000056476.7|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like
mm10_v2_chr7_-_134938264_134938430	0.042727	UCACAUU	ENSMUST00000171394.1|Fam196a|ENSMUSG00000073805.4|family with sequence similarity 196, member A
mm10_v2_chr12_-_27342696_27342726	0.0422974	UCACAUU	ENSMUST00000079063.5|Sox11|ENSMUSG00000063632.5|SRY-box containing gene 11
mm10_v2_chrX_+_36328353_36328418	0.0416491	UCACAUU	ENSMUST00000016383.3|Lonrf3|ENSMUSG00000016239.5|LON peptidase N-terminal domain and ring finger 3
mm10_v2_chr12_-_59061425_59061477	0.0404056	UCACAUU	ENSMUST00000021380.8|Trappc6b|ENSMUSG00000020993.8|trafficking protein particle complex 6B
mm10_v2_chr6_+_43265582_43265681	0.0400697	UCACAUU	ENSMUST00000031750.7|Arhgef5|ENSMUSG00000033542.7|Rho guanine nucleotide exchange factor (GEF) 5
mm10_v2_chr7_+_80186835_80186904	0.0386352	UCACAUU	ENSMUST00000107383.1|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 	ENSMUST00000032754.7|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm10_v2_chr9_+_80165013_80165055	0.0386009	UCACAUU	ENSMUST00000035889.8|Myo6|ENSMUSG00000033577.12|myosin VI 	ENSMUST00000113268.1|Myo6|ENSMUSG00000033577.12|myosin VI
mm10_v2_chr3_-_105801323_105801377	0.0384588	UCACAUU	ENSMUST00000090678.6|Rap1a|ENSMUSG00000068798.6|RAS-related protein-1a
mm10_v2_chr13_-_111808938_111809018	0.0380218	UCACAUU	ENSMUST00000109267.2|Map3k1|ENSMUSG00000021754.11|mitogen-activated protein kinase kinase kinase 1
mm10_v2_chr9_+_45055166_45055195	0.0379022	UCACAUU	ENSMUST00000114664.1|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3 	ENSMUST00000093856.3|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3
mm10_v2_chr10_+_19934472_19934526	0.0370693	UCACAUU	ENSMUST00000095806.3|Map3k5|ENSMUSG00000071369.4|mitogen-activated protein kinase kinase kinase 5 	ENSMUST00000120259.1|Map3k5|ENSMUSG00000071369.4|mitogen-activated protein kinase kinase kinase 5
mm10_v2_chr12_+_103532435_103532565	0.036571	UCACAUU	ENSMUST00000021631.5|Ppp4r4|ENSMUSG00000021209.6|protein phosphatase 4, regulatory subunit 4
mm10_v2_chr1_-_13372434_13372457	0.0363722	UCACAUU	ENSMUST00000081713.4|Ncoa2|ENSMUSG00000005886.8|nuclear receptor coactivator 2
mm10_v2_chr18_-_46597480_46597543	0.0357501	UCACAUU	ENSMUST00000151189.1|Tmed7|ENSMUSG00000033184.8|transmembrane emp24 protein transport domain containing 7
mm10_v2_chr16_-_74411292_74411430	0.0355796	UCACAUU	ENSMUST00000117200.1|Robo2|ENSMUSG00000052516.11|roundabout homolog 2 (Drosophila)
mm10_v2_chr6_+_17463749_17463809	0.0354987	UCACAUU	ENSMUST00000115443.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr4_+_124802543_124802678	0.0353511	UCACAUU	ENSMUST00000138807.1|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1 	ENSMUST00000030723.2|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1 	ENSMUST00000175875.1|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1
mm10_v2_chr5_+_33820695_33820835	0.0338462	UCACAUU	ENSMUST00000075812.4|Whsc1|ENSMUSG00000057406.10|Wolf-Hirschhorn syndrome candidate 1 (human) 	ENSMUST00000114397.2|Whsc1|ENSMUSG00000057406.10|Wolf-Hirschhorn syndrome candidate 1 (human) 	ENSMUST00000155880.1|Whsc1|ENSMUSG00000057406.10|Wolf-Hirschhorn syndrome candidate 1 (human)
mm10_v2_chr3_+_40540751_40540790	0.0334923	UCACAUU	ENSMUST00000091186.3|Intu|ENSMUSG00000060798.4|inturned planar cell polarity effector homolog (Drosophila)
mm10_v2_chr10_-_91171525_91171610	0.032889	UCACAUU	ENSMUST00000072239.7|Tmpo|ENSMUSG00000019961.10|thymopoietin 	ENSMUST00000092219.6|Tmpo|ENSMUSG00000019961.10|thymopoietin 	ENSMUST00000099355.4|Tmpo|ENSMUSG00000019961.10|thymopoietin 	ENSMUST00000105293.3|Tmpo|ENSMUSG00000019961.10|thymopoietin 	ENSMUST00000020123.5|Tmpo|ENSMUSG00000019961.10|thymopoietin
mm10_v2_chr2_-_157566319_157566361	0.0327517	UCACAUU	ENSMUST00000109528.2|Blcap|ENSMUSG00000067787.4|bladder cancer associated protein homolog (human) 	ENSMUST00000088494.2|Blcap|ENSMUSG00000067787.4|bladder cancer associated protein homolog (human)
mm10_v2_chr14_-_20181773_20181790	0.0320801	UCACAUU	ENSMUST00000024011.8|Kcnk5|ENSMUSG00000023243.8|potassium channel, subfamily K, member 5
mm10_v2_chrX_+_101254528_101254574	0.0313809	UCACAUU	ENSMUST00000062000.4|Foxo4|ENSMUSG00000042903.7|forkhead box O4
mm10_v2_chr15_+_84923383_84923428	0.0308732	UCACAUU	ENSMUST00000165443.2|Nup50|ENSMUSG00000016619.9|nucleoporin 50
mm10_v2_chr2_+_154436437_154436535	0.0307991	UCACAUU	ENSMUST00000109725.1|Cbfa2t2|ENSMUSG00000038533.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human) 	ENSMUST00000099178.3|Cbfa2t2|ENSMUSG00000038533.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human) 	ENSMUST00000045270.8|Cbfa2t2|ENSMUSG00000038533.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human) 	ENSMUST00000109724.1|Cbfa2t2|ENSMUSG00000038533.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)
mm10_v2_chr5_+_30588078_30588171	0.030548	UCACAUU	ENSMUST00000066295.2|Kcnk3|ENSMUSG00000049265.6|potassium channel, subfamily K, member 3
mm10_v2_chr7_-_99858872_99858906	0.0302036	UCACAUU	ENSMUST00000036274.6|Spcs2|ENSMUSG00000035227.6|signal peptidase complex subunit 2 homolog (S. cerevisiae)
mm10_v2_chr14_+_56887795_56887795	0.0301543	UCACAUU	ENSMUST00000022511.8|Zmym2|ENSMUSG00000021945.8|zinc finger, MYM-type 2
mm10_v2_chr7_+_98703091_98703137	0.0301163	UCACAUU	ENSMUST00000033009.9|Prkrir|ENSMUSG00000030753.9|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)
mm10_v2_chr6_+_54816906_54816920	0.0295619	UCACAUU	ENSMUST00000079869.6|Znrf2|ENSMUSG00000058446.8|zinc and ring finger 2
mm10_v2_chr11_-_47379405_47379522	0.0293488	UCACAUU	ENSMUST00000077221.5|Sgcd|ENSMUSG00000020354.9|sarcoglycan, delta (dystrophin-associated glycoprotein)
mm10_v2_chr12_-_4477138_4477196	0.0292557	UCACAUU	ENSMUST00000085814.3|Ncoa1|ENSMUSG00000020647.9|nuclear receptor coactivator 1
mm10_v2_chr7_-_65371210_65371287	0.0289584	UCACAUU	ENSMUST00000102592.3|Tjp1|ENSMUSG00000030516.8|tight junction protein 1
mm10_v2_chr1_-_14310198_14310218	0.0289495	UCACAUU	ENSMUST00000168081.2|Eya1|ENSMUSG00000025932.8|eyes absent 1 homolog (Drosophila) 	ENSMUST00000027066.6|Eya1|ENSMUSG00000025932.8|eyes absent 1 homolog (Drosophila)
mm10_v2_chr5_+_43233463_43233491	0.0288795	UCACAUU	ENSMUST00000169035.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2 	ENSMUST00000166713.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2
mm10_v2_chr6_-_100287441_100287465	0.0286578	UCACAUU	ENSMUST00000101118.2|Rybp|ENSMUSG00000072872.2|RING1 and YY1 binding protein
mm10_v2_chr7_-_116443439_116443462	0.0285217	UCACAUU	ENSMUST00000170430.1|Pik3c2a|ENSMUSG00000030660.8|phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide
mm10_v2_chr2_+_59612034_59612109	0.0280818	UCACAUU	ENSMUST00000112568.1|Tanc1|ENSMUSG00000035168.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 	ENSMUST00000037526.4|Tanc1|ENSMUSG00000035168.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
mm10_v2_chr3_-_116007399_116007411	0.0277922	UCACAUU	ENSMUST00000067485.3|Slc30a7|ENSMUSG00000054414.3|solute carrier family 30 (zinc transporter), member 7
mm10_v2_chr3_-_79567679_79567764	0.0276154	UCACAUU	ENSMUST00000076136.4|Fnip2|ENSMUSG00000061175.5|folliculin interacting protein 2
mm10_v2_chr3_+_41555723_41555745	0.0274607	UCACAUU	ENSMUST00000026865.8|Phf17|ENSMUSG00000025764.8|PHD finger protein 17
mm10_v2_chr12_-_75596195_75596261	0.0273371	UCACAUU	ENSMUST00000021447.7|Ppp2r5e|ENSMUSG00000021051.9|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform
mm10_v2_chr13_-_100650981_100651085	0.0273285	UCACAUU	ENSMUST00000022136.6|Rad17|ENSMUSG00000021635.7|RAD17 homolog (S. pombe) 	ENSMUST00000177848.1|Rad17|ENSMUSG00000021635.7|RAD17 homolog (S. pombe)
mm10_v2_chr5_+_96997676_96997766	0.0272903	UCACAUU	ENSMUST00000112974.1|Bmp2k|ENSMUSG00000034663.7|BMP2 inducible kinase 	ENSMUST00000035635.7|Bmp2k|ENSMUSG00000034663.7|BMP2 inducible kinase
mm10_v2_chr5_-_92083455_92083557	0.0271184	UCACAUU	ENSMUST00000169094.1|G3bp2|ENSMUSG00000029405.10|GTPase activating protein (SH3 domain) binding protein 2 	ENSMUST00000167918.1|G3bp2|ENSMUSG00000029405.10|GTPase activating protein (SH3 domain) binding protein 2
mm10_v2_chr1_-_16519284_16519336	0.0266283	UCACAUU	ENSMUST00000162751.1|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila) 	ENSMUST00000027052.6|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila) 	ENSMUST00000149320.2|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila)
mm10_v2_chr12_-_64965496_64965538	0.0264872	UCACAUU	ENSMUST00000021331.7|Klhl28|ENSMUSG00000020948.8|kelch-like 28
mm10_v2_chr18_-_58209926_58210067	0.0264398	UCACAUU	ENSMUST00000025497.6|Fbn2|ENSMUSG00000024598.8|fibrillin 2
mm10_v2_chr9_-_78108617_78108656	0.0263741	UCACAUU	ENSMUST00000085311.6|Fbxo9|ENSMUSG00000001366.8|f-box protein 9
mm10_v2_chr10_+_85102627_85102719	0.0262925	UCACAUU	ENSMUST00000095383.4|AI597468|ENSMUSG00000060935.5|expressed sequence AI597468
mm10_v2_chr6_+_122308684_122308720	0.0261338	UCACAUU	ENSMUST00000007602.8|M6pr|ENSMUSG00000007458.8|mannose-6-phosphate receptor, cation dependent 	ENSMUST00000112610.1|M6pr|ENSMUSG00000007458.8|mannose-6-phosphate receptor, cation dependent
mm10_v2_chrX_+_109095359_109095391	0.0260809	UCACAUU	ENSMUST00000033598.8|Sh3bgrl|ENSMUSG00000031246.8|SH3-binding domain glutamic acid-rich protein like
mm10_v2_chr12_+_110737949_110738024	0.0257452	UCACAUU	ENSMUST00000095410.2|Wdr20a|ENSMUSG00000037957.9|WD repeat domain 20A
mm10_v2_chr7_-_84409959_84410002	0.0256597	UCACAUU	ENSMUST00000085077.3|Arnt2|ENSMUSG00000015709.8|aryl hydrocarbon receptor nuclear translocator 2
mm10_v2_chr9_-_14751987_14752122	0.0256264	UCACAUU	ENSMUST00000061498.5|Fut4|ENSMUSG00000049307.5|fucosyltransferase 4
mm10_v2_chr16_+_58408443_58408523	0.0256185	UCACAUU	ENSMUST00000046663.7|Dcbld2|ENSMUSG00000035107.7|discoidin, CUB and LCCL domain containing 2
mm10_v2_chr4_+_8691303_8691380	0.025259	UCACAUU	ENSMUST00000051558.3|Chd7|ENSMUSG00000041235.5|chromodomain helicase DNA binding protein 7
mm10_v2_chr19_-_44107447_44107492	0.0251393	UCACAUU	ENSMUST00000119591.1|Chuk|ENSMUSG00000025199.10|conserved helix-loop-helix ubiquitous kinase 	ENSMUST00000026217.4|Chuk|ENSMUSG00000025199.10|conserved helix-loop-helix ubiquitous kinase
mm10_v2_chr8_+_60632856_60632905	0.0250844	UCACAUU	ENSMUST00000160719.1|Mfap3l|ENSMUSG00000031647.4|microfibrillar-associated protein 3-like
mm10_v2_chr11_+_75732869_75732975	0.0250312	UCACAUU	ENSMUST00000067664.3|Ywhae|ENSMUSG00000020849.7|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm10_v2_chr7_-_114117761_114117787	0.0249763	UCACAUU	ENSMUST00000069449.5|Rras2|ENSMUSG00000055723.5|related RAS viral (r-ras) oncogene homolog 2
mm10_v2_chr16_+_38089001_38089064	0.0249536	UCACAUU	ENSMUST00000023507.6|Gsk3b|ENSMUSG00000022812.7|glycogen synthase kinase 3 beta
mm10_v2_chr18_-_38338997_38339007	0.0249441	UCACAUU	ENSMUST00000063814.8|Gnpda1|ENSMUSG00000052102.8|glucosamine-6-phosphate deaminase 1
mm10_v2_chr3_+_103914560_103914605	0.0245864	UCACAUU	ENSMUST00000106806.1|Rsbn1|ENSMUSG00000044098.8|rosbin, round spermatid basic protein 1
mm10_v2_chr11_+_103116228_103116325	0.0245327	UCACAUU	ENSMUST00000053063.5|Hexim1|ENSMUSG00000048878.5|hexamethylene bis-acetamide inducible 1
mm10_v2_chr3_+_95588928_95588953	0.024373	UCACAUU	ENSMUST00000177390.1|Golph3l|ENSMUSG00000046519.9|golgi phosphoprotein 3-like 	ENSMUST00000098861.4|Golph3l|ENSMUSG00000046519.9|golgi phosphoprotein 3-like 	ENSMUST00000060323.5|Golph3l|ENSMUSG00000046519.9|golgi phosphoprotein 3-like
mm10_v2_chr1_-_161876656_161876682	0.0241054	UCACAUU	ENSMUST00000048377.5|Suco|ENSMUSG00000040297.7|SUN domain containing ossification factor
mm10_v2_chr10_-_45470201_45470260	0.0239667	UCACAUU	ENSMUST00000079390.6|Lin28b|ENSMUSG00000063804.7|lin-28 homolog B (C. elegans)
mm10_v2_chr19_+_40894692_40894736	0.0239574	UCACAUU	ENSMUST00000050092.6|Zfp518a|ENSMUSG00000049164.6|zinc finger protein 518A
mm10_v2_chr13_-_98891036_98891063	0.0238906	UCACAUU	ENSMUST00000109399.2|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr8_+_35587780_35587825	0.0235865	UCACAUU	ENSMUST00000037666.5|Mfhas1|ENSMUSG00000070056.5|malignant fibrous histiocytoma amplified sequence 1
mm10_v2_chr12_-_111908040_111908125	0.0232529	UCACAUU	ENSMUST00000163747.2|Ppp1r13b|ENSMUSG00000021285.8|protein phosphatase 1, regulatory (inhibitor) subunit 13B 	ENSMUST00000054815.7|Ppp1r13b|ENSMUSG00000021285.8|protein phosphatase 1, regulatory (inhibitor) subunit 13B
mm10_v2_chr1_-_80340480_80340512	0.0230576	UCACAUU	ENSMUST00000163119.1|Cul3|ENSMUSG00000004364.8|cullin 3
mm10_v2_chr2_+_164456936_164456988	0.022771	UCACAUU	ENSMUST00000109352.1|Sys1|ENSMUSG00000045503.10|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
mm10_v2_chr8_+_27023793_27023810	0.0227606	UCACAUU	ENSMUST00000033873.7|Erlin2|ENSMUSG00000031483.7|ER lipid raft associated 2
mm10_v2_chr7_+_87602544_87602544	0.0224048	UCACAUU	ENSMUST00000167164.1|Grm5|ENSMUSG00000049583.8|glutamate receptor, metabotropic 5 	ENSMUST00000107263.2|Grm5|ENSMUSG00000049583.8|glutamate receptor, metabotropic 5
mm10_v2_chr15_-_82912134_82912190	0.0221469	UCACAUU	ENSMUST00000048966.5|Tcf20|ENSMUSG00000041852.8|transcription factor 20 	ENSMUST00000109510.2|Tcf20|ENSMUSG00000041852.8|transcription factor 20
mm10_v2_chr5_-_5514730_5514830	0.0220112	UCACAUU	ENSMUST00000115445.1|Cldn12|ENSMUSG00000046798.8|claudin 12 	ENSMUST00000179804.1|Cldn12|ENSMUSG00000046798.8|claudin 12 	ENSMUST00000125110.1|Cldn12|ENSMUSG00000046798.8|claudin 12 	ENSMUST00000115446.1|Cldn12|ENSMUSG00000046798.8|claudin 12
mm10_v2_chr10_-_112928974_112929026	0.021911	UCACAUU	ENSMUST00000099276.2|Atxn7l3b|ENSMUSG00000074748.2|ataxin 7-like 3B
mm10_v2_chr13_-_55362782_55362804	0.0214857	UCACAUU	ENSMUST00000021940.7|Lman2|ENSMUSG00000021484.7|lectin, mannose-binding 2
mm10_v2_chr2_+_146221921_146221921	0.0214569	UCACAUU	ENSMUST00000089257.4|Insm1|ENSMUSG00000068154.4|insulinoma-associated 1
mm10_v2_chr1_-_83408190_83408222	0.0214539	UCACAUU	ENSMUST00000160953.1|Sphkap|ENSMUSG00000026163.11|SPHK1 interactor, AKAP domain containing
mm10_v2_chr7_+_3617357_3617389	0.0213309	UCACAUU	ENSMUST00000076657.4|Ndufa3|ENSMUSG00000035674.7|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3 	ENSMUST00000108644.1|Ndufa3|ENSMUSG00000035674.7|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3
mm10_v2_chr1_-_56972437_56972502	0.0212435	UCACAUU	ENSMUST00000042857.7|Satb2|ENSMUSG00000038331.9|special AT-rich sequence binding protein 2
mm10_v2_chr2_-_116065798_116065853	0.021194	UCACAUU	ENSMUST00000110907.1|Meis2|ENSMUSG00000027210.14|Meis homeobox 2 	ENSMUST00000110908.2|Meis2|ENSMUSG00000027210.14|Meis homeobox 2
mm10_v2_chr15_-_59082026_59082090	0.0211594	UCACAUU	ENSMUST00000080371.6|Mtss1|ENSMUSG00000022353.9|metastasis suppressor 1
mm10_v2_chr5_-_148928619_148928659	0.0211033	UCACAUU	ENSMUST00000149169.1|Katnal1|ENSMUSG00000041298.9|katanin p60 subunit A-like 1 	ENSMUST00000047257.8|Katnal1|ENSMUSG00000041298.9|katanin p60 subunit A-like 1
mm10_v2_chr7_+_44748413_44748560	0.0210636	UCACAUU	ENSMUST00000002275.8|Vrk3|ENSMUSG00000002205.9|vaccinia related kinase 3
mm10_v2_chr10_-_93311073_93311161	0.0208639	UCACAUU	ENSMUST00000008542.5|Elk3|ENSMUSG00000008398.8|ELK3, member of ETS oncogene family
mm10_v2_chr10_+_70097102_70097211	0.0208093	UCACAUU	ENSMUST00000147545.1|Ccdc6|ENSMUSG00000048701.7|coiled-coil domain containing 6
mm10_v2_chr14_-_70159433_70159502	0.0206764	UCACAUU	ENSMUST00000058240.7|9930012K11Rik|ENSMUSG00000044551.7|RIKEN cDNA 9930012K11 gene 	ENSMUST00000153871.1|9930012K11Rik|ENSMUSG00000044551.7|RIKEN cDNA 9930012K11 gene
mm10_v2_chr5_-_107289561_107289637	0.0204188	UCACAUU	ENSMUST00000031224.8|Tgfbr3|ENSMUSG00000029287.8|transforming growth factor, beta receptor III
mm10_v2_chr8_-_47675130_47675165	0.0203522	UCACAUU	ENSMUST00000080353.2|Ing2|ENSMUSG00000063049.4|inhibitor of growth family, member 2
mm10_v2_chr5_-_124327883_124327972	0.0201159	UCACAUU	ENSMUST00000031344.6|Mphosph9|ENSMUSG00000038126.11|M-phase phosphoprotein 9
mm10_v2_chr11_-_61855026_61855073	0.0201026	UCACAUU	ENSMUST00000004920.3|Ulk2|ENSMUSG00000004798.8|unc-51 like kinase 2
mm10_v2_chr13_-_45964964_45965001	0.0199151	UCACAUU	ENSMUST00000180110.1|Atxn1|ENSMUSG00000046876.9|ataxin 1 	ENSMUST00000091628.3|Atxn1|ENSMUSG00000046876.9|ataxin 1 	ENSMUST00000167708.2|Atxn1|ENSMUSG00000046876.9|ataxin 1
mm10_v2_chrX_+_138914422_138914438	0.0188869	UCACAUU	ENSMUST00000064937.7|Nrk|ENSMUSG00000052854.9|Nik related kinase 	ENSMUST00000113052.1|Nrk|ENSMUSG00000052854.9|Nik related kinase
mm10_v2_chr10_+_110920170_110920188	0.0187539	UCACAUU	ENSMUST00000020403.5|Csrp2|ENSMUSG00000020186.6|cysteine and glycine-rich protein 2
mm10_v2_chr5_+_145167207_145167259	0.0187528	UCACAUU	ENSMUST00000160629.1|Cpsf4|ENSMUSG00000029625.10|cleavage and polyadenylation specific factor 4 	ENSMUST00000070487.5|Cpsf4|ENSMUSG00000029625.10|cleavage and polyadenylation specific factor 4 	ENSMUST00000160422.1|Cpsf4|ENSMUSG00000029625.10|cleavage and polyadenylation specific factor 4 	ENSMUST00000162244.1|Cpsf4|ENSMUSG00000029625.10|cleavage and polyadenylation specific factor 4
mm10_v2_chr2_+_164074122_164074218	0.0187197	UCACAUU	ENSMUST00000018353.7|Stk4|ENSMUSG00000018209.9|serine/threonine kinase 4
mm10_v2_chr5_-_52669677_52669729	0.0187079	UCACAUU	ENSMUST00000031069.6|Sepsecs|ENSMUSG00000029173.6|Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
mm10_v2_chr16_-_32079270_32079368	0.0185744	UCACAUU	ENSMUST00000023467.8|Pak2|ENSMUSG00000022781.8|p21 protein (Cdc42/Rac)-activated kinase 2
mm10_v2_chr8_-_60983215_60983319	0.0178282	UCACAUU	ENSMUST00000004430.7|Clcn3|ENSMUSG00000004319.9|chloride channel 3 	ENSMUST00000110301.1|Clcn3|ENSMUSG00000004319.9|chloride channel 3 	ENSMUST00000093490.2|Clcn3|ENSMUSG00000004319.9|chloride channel 3
mm10_v2_chr2_+_160645881_160645896	0.0177445	UCACAUU	ENSMUST00000109468.2|Top1|ENSMUSG00000070544.6|topoisomerase (DNA) I
mm10_v2_chr1_+_72284367_72284419	0.0176849	UCACAUU	ENSMUST00000027380.5|Tmem169|ENSMUSG00000026188.5|transmembrane protein 169 	ENSMUST00000141783.1|Tmem169|ENSMUSG00000026188.5|transmembrane protein 169
mm10_v2_chr17_-_47833169_47833254	0.0174493	UCACAUU	ENSMUST00000131971.1|Mdfi|ENSMUSG00000032717.8|MyoD family inhibitor 	ENSMUST00000129360.1|Mdfi|ENSMUSG00000032717.8|MyoD family inhibitor 	ENSMUST00000113280.1|Mdfi|ENSMUSG00000032717.8|MyoD family inhibitor 	ENSMUST00000132125.1|Mdfi|ENSMUSG00000032717.8|MyoD family inhibitor
mm10_v2_chr10_-_37138863_37138937	0.0173356	UCACAUU	ENSMUST00000092584.5|Marcks|ENSMUSG00000069662.5|myristoylated alanine rich protein kinase C substrate
mm10_v2_chr2_+_91730127_91730225	0.0171762	UCACAUU	ENSMUST00000099712.3|Ambra1|ENSMUSG00000040506.10|autophagy/beclin 1 regulator 1 	ENSMUST00000111317.2|Ambra1|ENSMUSG00000040506.10|autophagy/beclin 1 regulator 1 	ENSMUST00000111316.2|Ambra1|ENSMUSG00000040506.10|autophagy/beclin 1 regulator 1 	ENSMUST00000045705.7|Ambra1|ENSMUSG00000040506.10|autophagy/beclin 1 regulator 1
mm10_v2_chr4_-_101265236_101265282	0.017119	UCACAUU	ENSMUST00000149297.1|Jak1|ENSMUSG00000028530.8|Janus kinase 1 	ENSMUST00000102781.3|Jak1|ENSMUSG00000028530.8|Janus kinase 1
mm10_v2_chr10_-_117845935_117845949	0.0170067	UCACAUU	ENSMUST00000064667.7|Rap1b|ENSMUSG00000052681.7|RAS related protein 1b
mm10_v2_chr18_-_56975333_56975376	0.0168186	UCACAUU	ENSMUST00000139243.2|C330018D20Rik|ENSMUSG00000024592.9|RIKEN cDNA C330018D20 gene 	ENSMUST00000025488.8|C330018D20Rik|ENSMUSG00000024592.9|RIKEN cDNA C330018D20 gene
mm10_v2_chr3_+_142530329_142530386	0.0165575	UCACAUU	ENSMUST00000171263.1|Gbp7|ENSMUSG00000040253.9|guanylate binding protein 7 	ENSMUST00000045097.9|Gbp7|ENSMUSG00000040253.9|guanylate binding protein 7
mm10_v2_chr18_-_10610124_10610144	0.0164292	UCACAUU	ENSMUST00000097670.3|Esco1|ENSMUSG00000024293.9|establishment of cohesion 1 homolog 1 (S. cerevisiae)
mm10_v2_chr2_+_127247908_127247997	0.0163329	UCACAUU	ENSMUST00000035871.8|Tmem127|ENSMUSG00000034850.9|transmembrane protein 127 	ENSMUST00000174503.1|Tmem127|ENSMUSG00000034850.9|transmembrane protein 127 	ENSMUST00000174288.1|Tmem127|ENSMUSG00000034850.9|transmembrane protein 127
mm10_v2_chr6_+_86195214_86195251	0.0162374	UCACAUU	ENSMUST00000032066.9|Tgfa|ENSMUSG00000029999.9|transforming growth factor alpha
mm10_v2_chr11_-_5542177_5542219	0.0161394	UCACAUU	ENSMUST00000020776.4|Ccdc117|ENSMUSG00000020482.4|coiled-coil domain containing 117
mm10_v2_chr5_+_64803513_64803530	0.0160418	UCACAUU	ENSMUST00000165536.1|Klf3|ENSMUSG00000029178.8|Kruppel-like factor 3 (basic)
mm10_v2_chr18_-_23041641_23041671	0.0160336	UCACAUU	ENSMUST00000097651.3|Nol4|ENSMUSG00000041923.9|nucleolar protein 4
mm10_v2_chr8_+_79639618_79639730	0.0159883	UCACAUU	ENSMUST00000173078.1|Otud4|ENSMUSG00000036990.7|OTU domain containing 4 	ENSMUST00000173286.1|Otud4|ENSMUSG00000036990.7|OTU domain containing 4
mm10_v2_chr1_+_23761926_23761999	0.0159735	UCACAUU	ENSMUST00000063663.5|B3gat2|ENSMUSG00000026156.8|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
mm10_v2_chr9_+_50603892_50603903	0.0159328	UCACAUU	ENSMUST00000044051.4|Timm8b|ENSMUSG00000039016.4|translocase of inner mitochondrial membrane 8B
mm10_v2_chr1_+_85793411_85793541	0.0158992	UCACAUU	ENSMUST00000113360.1|Cab39|ENSMUSG00000036707.10|calcium binding protein 39 	ENSMUST00000126962.1|Cab39|ENSMUSG00000036707.10|calcium binding protein 39
mm10_v2_chr19_+_21778325_21778363	0.0157842	UCACAUU	ENSMUST00000096194.2|Tmem2|ENSMUSG00000024754.6|transmembrane protein 2 	ENSMUST00000025663.6|Tmem2|ENSMUSG00000024754.6|transmembrane protein 2
mm10_v2_chr11_-_6475992_6476102	0.0157535	UCACAUU	ENSMUST00000179343.1|Purb|ENSMUSG00000094483.1|purine rich element binding protein B
mm10_v2_chr1_-_181842334_181842401	0.0152211	UCACAUU	ENSMUST00000005003.6|Lbr|ENSMUSG00000004880.6|lamin B receptor
mm10_v2_chr14_+_14012491_14012693	0.0152185	UCACAUU	ENSMUST00000022257.2|Atxn7|ENSMUSG00000021738.4|ataxin 7
mm10_v2_chr13_+_92611119_92611139	0.0151711	UCACAUU	ENSMUST00000049488.7|Serinc5|ENSMUSG00000021703.8|serine incorporator 5
mm10_v2_chr19_+_60889749_60889749	0.0149982	UCACAUU	ENSMUST00000003313.8|Grk5|ENSMUSG00000003228.8|G protein-coupled receptor kinase 5
mm10_v2_chr9_+_118040475_118040499	0.0149656	UCACAUU	ENSMUST00000044454.5|Azi2|ENSMUSG00000039285.6|5-azacytidine induced gene 2
mm10_v2_chr3_-_94582716_94582741	0.0149073	UCACAUU	ENSMUST00000029783.9|Snx27|ENSMUSG00000028136.9|sorting nexin family member 27
mm10_v2_chr17_+_83215271_83215292	0.0148671	UCACAUU	ENSMUST00000170794.1|Pkdcc|ENSMUSG00000024247.8|protein kinase domain containing, cytoplasmic
mm10_v2_chr5_+_103754154_103754188	0.0147983	UCACAUU	ENSMUST00000054979.3|Aff1|ENSMUSG00000029313.12|AF4/FMR2 family, member 1
mm10_v2_chr3_-_51277470_51277514	0.0147832	UCACAUU	ENSMUST00000108053.2|Elf2|ENSMUSG00000037174.12|E74-like factor 2 	ENSMUST00000108051.1|Elf2|ENSMUSG00000037174.12|E74-like factor 2
mm10_v2_chr19_+_56397100_56397157	0.0146865	UCACAUU	ENSMUST00000026062.9|Casp7|ENSMUSG00000025076.9|caspase 7
mm10_v2_chr10_+_89744988_89745022	0.0143936	UCACAUU	ENSMUST00000020112.5|Uhrf1bp1l|ENSMUSG00000019951.9|UHRF1 (ICBP90) binding protein 1-like
mm10_v2_chr10_+_74967164_74967203	0.0142699	UCACAUU	ENSMUST00000037813.4|Gnaz|ENSMUSG00000040009.5|guanine nucleotide binding protein, alpha z subunit
mm10_v2_chr7_+_128744870_128745020	0.0141748	UCACAUU	ENSMUST00000042942.8|Sec23ip|ENSMUSG00000055319.7|Sec23 interacting protein
mm10_v2_chr4_+_133369702_133369709	0.0139704	UCACAUU	ENSMUST00000030669.7|Slc9a1|ENSMUSG00000028854.9|solute carrier family 9 (sodium/hydrogen exchanger), member 1
mm10_v2_chr1_-_168431695_168431750	0.0139662	UCACAUU	ENSMUST00000176790.1|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr14_-_124677089_124677127	0.0139494	UCACAUU	ENSMUST00000095529.3|Fgf14|ENSMUSG00000025551.7|fibroblast growth factor 14
mm10_v2_chr5_-_30960236_30960320	0.0138627	UCACAUU	ENSMUST00000088063.2|Preb|ENSMUSG00000045302.7|prolactin regulatory element binding
mm10_v2_chr10_+_82859198_82859217	0.013806	UCACAUU	ENSMUST00000020484.6|Txnrd1|ENSMUSG00000020250.9|thioredoxin reductase 1
mm10_v2_chr2_+_173737492_173737511	0.0137157	UCACAUU	ENSMUST00000067530.4|Vapb|ENSMUSG00000054455.4|vesicle-associated membrane protein, associated protein B and C
mm10_v2_chr5_+_115631902_115631933	0.0136939	UCACAUU	ENSMUST00000031492.8|Rab35|ENSMUSG00000029518.9|RAB35, member RAS oncogene family
mm10_v2_chr11_-_50292302_50292363	0.0136531	UCACAUU	ENSMUST00000059458.4|Maml1|ENSMUSG00000050567.10|mastermind like 1 (Drosophila)
mm10_v2_chr1_-_58586191_58586323	0.013336	UCACAUU	ENSMUST00000038372.7|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B 	ENSMUST00000097724.3|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B 	ENSMUST00000161000.1|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B 	ENSMUST00000161600.1|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B
mm10_v2_chr10_+_111164794_111164811	0.0132599	UCACAUU	ENSMUST00000105275.1|Osbpl8|ENSMUSG00000020189.7|oxysterol binding protein-like 8 	ENSMUST00000095310.1|Osbpl8|ENSMUSG00000020189.7|oxysterol binding protein-like 8
mm10_v2_chr6_+_135197977_135198023	0.0130553	UCACAUU	ENSMUST00000111915.1|8430419L09Rik|ENSMUSG00000030207.9|RIKEN cDNA 8430419L09 gene 	ENSMUST00000111916.1|8430419L09Rik|ENSMUSG00000030207.9|RIKEN cDNA 8430419L09 gene
mm10_v2_chr2_-_39226343_39226451	0.0130192	UCACAUU	ENSMUST00000028087.3|Ppp6c|ENSMUSG00000026753.3|protein phosphatase 6, catalytic subunit
mm10_v2_chr12_-_56535047_56535106	0.0128482	UCACAUU	ENSMUST00000178477.2|Nkx2-1|ENSMUSG00000001496.9|NK2 homeobox 1
mm10_v2_chrX_+_37126777_37126795	0.0127084	UCACAUU	ENSMUST00000016553.4|Nkap|ENSMUSG00000016409.4|NFKB activating protein
mm10_v2_chr17_+_8801742_8801751	0.0126998	UCACAUU	ENSMUST00000089085.2|Pde10a|ENSMUSG00000023868.9|phosphodiesterase 10A
mm10_v2_chr2_+_76406529_76406580	0.0125956	UCACAUU	ENSMUST00000111929.1|Osbpl6|ENSMUSG00000042359.12|oxysterol binding protein-like 6 	ENSMUST00000077972.4|Osbpl6|ENSMUSG00000042359.12|oxysterol binding protein-like 6 	ENSMUST00000111930.2|Osbpl6|ENSMUSG00000042359.12|oxysterol binding protein-like 6
mm10_v2_chr18_+_35771488_35771559	0.0124994	UCACAUU	ENSMUST00000170693.1|Ube2d2a|ENSMUSG00000091896.1|ubiquitin-conjugating enzyme E2D 2A
mm10_v2_chr12_+_84773262_84773319	0.0124001	UCACAUU	ENSMUST00000021667.5|Isca2|ENSMUSG00000021241.6|iron-sulfur cluster assembly 2 homolog (S. cerevisiae)
mm10_v2_chr5_-_124425907_124425946	0.0122643	UCACAUU	ENSMUST00000065263.5|Sbno1|ENSMUSG00000038095.9|sno, strawberry notch homolog 1 (Drosophila)
mm10_v2_chr1_-_23383149_23383225	0.0121455	UCACAUU	ENSMUST00000027343.5|Ogfrl1|ENSMUSG00000026158.5|opioid growth factor receptor-like 1
mm10_v2_chr15_-_100495239_100495267	0.0120298	UCACAUU	ENSMUST00000061457.5|Csrnp2|ENSMUSG00000044636.5|cysteine-serine-rich nuclear protein 2
mm10_v2_chr2_-_6884975_6884996	0.011997	UCACAUU	ENSMUST00000114924.3|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000170438.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000114934.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr4_-_83052147_83052185	0.0119432	UCACAUU	ENSMUST00000170248.2|Frem1|ENSMUSG00000059049.8|Fras1 related extracellular matrix protein 1
mm10_v2_chr6_-_3763618_3763629	0.0115542	UCACAUU	ENSMUST00000171613.1|Calcr|ENSMUSG00000023964.9|calcitonin receptor
mm10_v2_chr7_+_5080214_5080298	0.0113571	UCACAUU	ENSMUST00000098845.3|Epn1|ENSMUSG00000035203.9|epsin 1 	ENSMUST00000146317.1|Epn1|ENSMUSG00000035203.9|epsin 1 	ENSMUST00000153169.1|Epn1|ENSMUSG00000035203.9|epsin 1 	ENSMUST00000045277.6|Epn1|ENSMUSG00000035203.9|epsin 1
mm10_v2_chr10_-_115251407_115251493	0.0111026	UCACAUU	ENSMUST00000020339.8|Tbc1d15|ENSMUSG00000020130.8|TBC1 domain family, member 15
mm10_v2_chr5_+_32611171_32611245	0.0110923	UCACAUU	ENSMUST00000072311.6|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1 	ENSMUST00000168707.2|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1
mm10_v2_chr13_-_116309639_116309699	0.0110728	UCACAUU	ENSMUST00000036060.6|Isl1|ENSMUSG00000042258.7|ISL1 transcription factor, LIM/homeodomain
mm10_v2_chr2_+_90940397_90940543	0.0109909	UCACAUU	ENSMUST00000068726.6|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000005643.7|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000177642.1|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000111451.3|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000068747.7|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1
mm10_v2_chr10_+_5069192_5069192	0.0109571	UCACAUU	ENSMUST00000180100.1|Gm10097|ENSMUSG00000096553.1|predicted gene 10097
mm10_v2_chr3_-_116662643_116662677	0.0108616	UCACAUU	ENSMUST00000029570.5|Hiat1|ENSMUSG00000089911.1|hippocampus abundant gene transcript 1
mm10_v2_chr11_-_106788486_106788532	0.0107719	UCACAUU	ENSMUST00000021062.5|Ddx5|ENSMUSG00000020719.8|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm10_v2_chr5_-_114823460_114823475	0.0107177	UCACAUU	ENSMUST00000140374.1|Gm20499|ENSMUSG00000092252.1|predicted gene 20499 	ENSMUST00000100850.4|2610524H06Rik|ENSMUSG00000092486.1|RIKEN cDNA 2610524H06 gene
mm10_v2_chr1_+_138963709_138963808	0.010693	UCACAUU	ENSMUST00000168527.1|Dennd1b|ENSMUSG00000056268.9|DENN/MADD domain containing 1B
mm10_v2_chr12_-_78861636_78861641	0.0106418	UCACAUU	ENSMUST00000021536.7|Atp6v1d|ENSMUSG00000021114.8|ATPase, H+ transporting, lysosomal V1 subunit D
mm10_v2_chr4_-_126429501_126429556	0.0106404	UCACAUU	ENSMUST00000069097.6|Ago3|ENSMUSG00000028842.9|argonaute RISC catalytic subunit 3
mm10_v2_chr9_-_63757933_63757994	0.010628	UCACAUU	ENSMUST00000034973.3|Smad3|ENSMUSG00000032402.6|SMAD family member 3
mm10_v2_chr11_-_96065350_96065388	0.0106008	UCACAUU	ENSMUST00000100528.4|Ube2z|ENSMUSG00000014349.7|ubiquitin-conjugating enzyme E2Z (putative)
mm10_v2_chr12_+_17266545_17266601	0.0105667	UCACAUU	ENSMUST00000057288.5|Pdia6|ENSMUSG00000020571.6|protein disulfide isomerase associated 6
mm10_v2_chr4_+_53826014_53826107	0.0105153	UCACAUU	ENSMUST00000030127.6|Tmem38b|ENSMUSG00000028420.7|transmembrane protein 38B
mm10_v2_chr10_+_5593718_5593739	0.0104942	UCACAUU	ENSMUST00000051809.8|Myct1|ENSMUSG00000046916.8|myc target 1
mm10_v2_chr17_-_64331817_64331957	0.0104106	UCACAUU	ENSMUST00000172733.1|Pja2|ENSMUSG00000024083.9|praja 2, RING-H2 motif containing 	ENSMUST00000172818.1|Pja2|ENSMUSG00000024083.9|praja 2, RING-H2 motif containing
mm10_v2_chr9_-_99140065_99140087	0.0103308	UCACAUU	ENSMUST00000035037.7|Pik3cb|ENSMUSG00000032462.8|phosphatidylinositol 3-kinase, catalytic, beta polypeptide
mm10_v2_chr2_+_59160884_59161008	0.0102419	UCACAUU	ENSMUST00000037903.8|Pkp4|ENSMUSG00000026991.14|plakophilin 4
mm10_v2_chr12_-_14152038_14152069	0.0102317	UCACAUU	ENSMUST00000020926.6|Fam84a|ENSMUSG00000020607.6|family with sequence similarity 84, member A
mm10_v2_chr16_+_45224315_45224346	0.0101934	UCACAUU	ENSMUST00000102802.3|Btla|ENSMUSG00000052013.8|B and T lymphocyte associated 	ENSMUST00000063654.4|Btla|ENSMUSG00000052013.8|B and T lymphocyte associated
mm10_v2_chr18_+_7869159_7869209	0.0101643	UCACAUU	ENSMUST00000170932.1|Wac|ENSMUSG00000024283.8|WW domain containing adaptor with coiled-coil 	ENSMUST00000167020.1|Wac|ENSMUSG00000024283.8|WW domain containing adaptor with coiled-coil
mm10_v2_chr4_+_53779694_53779706	0.0101007	UCACAUU	ENSMUST00000030124.3|Tal2|ENSMUSG00000028417.3|T cell acute lymphocytic leukemia 2
mm10_v2_chr2_-_30967859_30967933	0.0098629	UCACAUU	ENSMUST00000028200.8|Tor1a|ENSMUSG00000026849.12|torsin family 1, member A (torsin A)
mm10_v2_chr6_-_124829398_124829484	0.00983421	UCACAUU	ENSMUST00000142058.1|Usp5|ENSMUSG00000038429.4|ubiquitin specific peptidase 5 (isopeptidase T) 	ENSMUST00000122110.1|Usp5|ENSMUSG00000038429.4|ubiquitin specific peptidase 5 (isopeptidase T) 	ENSMUST00000047510.3|Usp5|ENSMUSG00000038429.4|ubiquitin specific peptidase 5 (isopeptidase T)
mm10_v2_chr16_+_8830093_8830104	0.00972071	UCACAUU	ENSMUST00000023150.5|1810013L24Rik|ENSMUSG00000022507.5|RIKEN cDNA 1810013L24 gene
mm10_v2_chr4_-_11007635_11007676	0.00968861	UCACAUU	ENSMUST00000054776.3|Plekhf2|ENSMUSG00000049969.3|pleckstrin homology domain containing, family F (with FYVE domain) member 2
mm10_v2_chr11_+_95712673_95712673	0.00954317	UCACAUU	ENSMUST00000107717.1|Zfp652|ENSMUSG00000075595.3|zinc finger protein 652
mm10_v2_chrX_+_18162575_18162657	0.00941325	UCACAUU	ENSMUST00000044484.6|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A 	ENSMUST00000052368.8|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A
mm10_v2_chr14_-_67008834_67008877	0.00935672	UCACAUU	ENSMUST00000111115.1|Bnip3l|ENSMUSG00000022051.9|BCL2/adenovirus E1B interacting protein 3-like 	ENSMUST00000022634.8|Bnip3l|ENSMUSG00000022051.9|BCL2/adenovirus E1B interacting protein 3-like
mm10_v2_chr16_-_91011093_91011113	0.00935326	UCACAUU	ENSMUST00000170853.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1 	ENSMUST00000118390.2|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr1_-_151428440_151428474	0.00902599	UCACAUU	ENSMUST00000064771.5|Swt1|ENSMUSG00000052748.8|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
mm10_v2_chr6_-_120822680_120822707	0.00901645	UCACAUU	ENSMUST00000019354.8|Atp6v1e1|ENSMUSG00000019210.8|ATPase, H+ transporting, lysosomal V1 subunit E1
mm10_v2_chr12_+_8674129_8674150	0.00892441	UCACAUU	ENSMUST00000111123.2|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000178015.1|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000020915.3|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila)
mm10_v2_chrX_+_42149288_42149412	0.00885279	UCACAUU	ENSMUST00000115073.2|Stag2|ENSMUSG00000025862.8|stromal antigen 2 	ENSMUST00000115072.1|Stag2|ENSMUSG00000025862.8|stromal antigen 2
mm10_v2_chr4_-_25800083_25800146	0.00878145	UCACAUU	ENSMUST00000084770.4|Fut9|ENSMUSG00000055373.8|fucosyltransferase 9
mm10_v2_chr1_+_127774164_127774238	0.00872774	UCACAUU	ENSMUST00000027587.8|Ccnt2|ENSMUSG00000026349.8|cyclin T2 	ENSMUST00000112570.1|Ccnt2|ENSMUSG00000026349.8|cyclin T2
mm10_v2_chr2_-_104494400_104494463	0.00853356	UCACAUU	ENSMUST00000028600.7|Hipk3|ENSMUSG00000027177.8|homeodomain interacting protein kinase 3
mm10_v2_chr12_-_104751900_104751952	0.00846911	UCACAUU	ENSMUST00000041987.6|Dicer1|ENSMUSG00000041415.9|dicer 1, ribonuclease type III
mm10_v2_chr11_+_31872100_31872226	0.00842731	UCACAUU	ENSMUST00000020543.6|Cpeb4|ENSMUSG00000020300.8|cytoplasmic polyadenylation element binding protein 4 	ENSMUST00000109412.2|Cpeb4|ENSMUSG00000020300.8|cytoplasmic polyadenylation element binding protein 4
mm10_v2_chr6_+_38433913_38433965	0.00840838	UCACAUU	ENSMUST00000160583.1|Ubn2|ENSMUSG00000038538.11|ubinuclein 2
mm10_v2_chr4_-_129742275_129742312	0.00821793	UCACAUU	ENSMUST00000066257.5|Khdrbs1|ENSMUSG00000028790.7|KH domain containing, RNA binding, signal transduction associated 1
mm10_v2_chr12_-_102878406_102878449	0.00801084	UCACAUU	ENSMUST00000045652.6|Btbd7|ENSMUSG00000041702.6|BTB (POZ) domain containing 7
mm10_v2_chr7_-_99141068_99141149	0.00796619	UCACAUU	ENSMUST00000037968.8|Uvrag|ENSMUSG00000035354.8|UV radiation resistance associated gene
mm10_v2_chr9_+_101074727_101074727	0.00793751	UCACAUU	ENSMUST00000085177.3|Msl2|ENSMUSG00000066415.3|male-specific lethal 2 homolog (Drosophila)
mm10_v2_chr13_-_8871696_8871749	0.00792796	UCACAUU	ENSMUST00000054251.6|Wdr37|ENSMUSG00000021147.10|WD repeat domain 37 	ENSMUST00000176813.1|Wdr37|ENSMUSG00000021147.10|WD repeat domain 37
mm10_v2_chr11_+_117654798_117654824	0.00787028	UCACAUU	ENSMUST00000106344.1|Tnrc6c|ENSMUSG00000025571.7|trinucleotide repeat containing 6C
mm10_v2_chr10_-_59441748_59441782	0.00775198	UCACAUU	ENSMUST00000009798.4|Oit3|ENSMUSG00000009654.4|oncoprotein induced transcript 3
mm10_v2_chr13_+_41606216_41606216	0.00768997	UCACAUU	ENSMUST00000129449.1|Tmem170b|ENSMUSG00000087370.2|transmembrane protein 170B
mm10_v2_chr4_-_34882919_34882964	0.00766015	UCACAUU	ENSMUST00000098163.2|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292 	ENSMUST00000047950.5|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292
mm10_v2_chr10_+_11281304_11281357	0.0075242	UCACAUU	ENSMUST00000129456.1|Fbxo30|ENSMUSG00000047648.7|F-box protein 30
mm10_v2_chr1_-_186705980_186705999	0.00734851	UCACAUU	ENSMUST00000045288.8|Tgfb2|ENSMUSG00000039239.9|transforming growth factor, beta 2
mm10_v2_chr14_-_61439831_61439947	0.00732266	UCACAUU	ENSMUST00000022496.7|Kpna3|ENSMUSG00000021929.8|karyopherin (importin) alpha 3
mm10_v2_chr2_+_121140407_121140461	0.0072967	UCACAUU	ENSMUST00000028702.3|Adal|ENSMUSG00000027259.9|adenosine deaminase-like 	ENSMUST00000110665.1|Adal|ENSMUSG00000027259.9|adenosine deaminase-like
mm10_v2_chr2_-_73892530_73892555	0.00722144	UCACAUU	ENSMUST00000136958.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000112010.2|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000128531.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000112017.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2
mm10_v2_chr8_+_69088646_69088744	0.00719456	UCACAUU	ENSMUST00000006435.7|Atp6v1b2|ENSMUSG00000006273.8|ATPase, H+ transporting, lysosomal V1 subunit B2
mm10_v2_chr2_-_37647199_37647285	0.00719101	UCACAUU	ENSMUST00000028279.3|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr10_-_114801364_114801364	0.00716034	UCACAUU	ENSMUST00000061632.7|Trhde|ENSMUSG00000050663.7|TRH-degrading enzyme
mm10_v2_chr13_-_17805093_17805189	0.00711328	UCACAUU	ENSMUST00000042365.7|Cdk13|ENSMUSG00000041297.7|cyclin-dependent kinase 13
mm10_v2_chr5_+_123142187_123142229	0.00707048	UCACAUU	ENSMUST00000174836.1|Setd1b|ENSMUSG00000038384.10|SET domain containing 1B 	ENSMUST00000163030.2|Setd1b|ENSMUSG00000038384.10|SET domain containing 1B
mm10_v2_chr3_+_135438722_135438780	0.0070344	UCACAUU	ENSMUST00000166033.1|Ube2d3|ENSMUSG00000078578.3|ubiquitin-conjugating enzyme E2D 3
mm10_v2_chr2_+_28840406_28840462	0.00701203	UCACAUU	ENSMUST00000113853.2|Ddx31|ENSMUSG00000026806.9|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31
mm10_v2_chr5_-_114813943_114813976	0.00677156	UCACAUU	ENSMUST00000061251.5|1500011B03Rik|ENSMUSG00000072694.7|RIKEN cDNA 1500011B03 gene 	ENSMUST00000112160.3|1500011B03Rik|ENSMUSG00000072694.7|RIKEN cDNA 1500011B03 gene
mm10_v2_chr1_-_155972887_155972890	0.006651	UCACAUU	ENSMUST00000138762.1|Cep350|ENSMUSG00000033671.11|centrosomal protein 350 	ENSMUST00000124495.1|Cep350|ENSMUSG00000033671.11|centrosomal protein 350
mm10_v2_chr11_+_53770014_53770057	0.00656488	UCACAUU	ENSMUST00000108920.2|Irf1|ENSMUSG00000018899.10|interferon regulatory factor 1 	ENSMUST00000140866.1|Irf1|ENSMUSG00000018899.10|interferon regulatory factor 1 	ENSMUST00000108922.1|Irf1|ENSMUSG00000018899.10|interferon regulatory factor 1
mm10_v2_chr11_+_106084577_106084623	0.00656352	UCACAUU	ENSMUST00000002044.9|Map3k3|ENSMUSG00000020700.11|mitogen-activated protein kinase kinase kinase 3
mm10_v2_chr14_-_49066653_49066674	0.0063112	UCACAUU	ENSMUST00000162175.1|Exoc5|ENSMUSG00000061244.7|exocyst complex component 5
mm10_v2_chr16_-_64786321_64786321	0.00628073	UCACAUU	ENSMUST00000052588.4|Zfp654|ENSMUSG00000047141.4|zinc finger protein 654
mm10_v2_chr6_-_39725448_39725478	0.0061967	UCACAUU	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr15_-_51991679_51991760	0.00614815	UCACAUU	ENSMUST00000022927.9|Rad21|ENSMUSG00000022314.9|RAD21 homolog (S. pombe)
mm10_v2_chr16_+_44139821_44139900	0.00604832	UCACAUU	ENSMUST00000159514.1|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000161326.1|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000063520.8|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000063542.7|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm10_v2_chr2_-_34913976_34914043	0.00598489	UCACAUU	ENSMUST00000028232.3|Phf19|ENSMUSG00000026873.3|PHD finger protein 19
mm10_v2_chr10_-_118868903_118868903	0.00597897	UCACAUU	ENSMUST00000004281.8|Dyrk2|ENSMUSG00000028630.8|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm10_v2_chr3_-_84582476_84582534	0.00587692	UCACAUU	ENSMUST00000107687.2|Arfip1|ENSMUSG00000074513.3|ADP-ribosylation factor interacting protein 1 	ENSMUST00000098990.3|Arfip1|ENSMUSG00000074513.3|ADP-ribosylation factor interacting protein 1
mm10_v2_chr12_+_51348019_51348061	0.00584506	UCACAUU	ENSMUST00000054308.6|G2e3|ENSMUSG00000035293.7|G2/M-phase specific E3 ubiquitin ligase
mm10_v2_chr1_-_166002591_166002609	0.00584475	UCACAUU	ENSMUST00000111429.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000176800.1|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr8_-_111854278_111854356	0.00579647	UCACAUU	ENSMUST00000034432.5|Cfdp1|ENSMUSG00000031954.5|craniofacial development protein 1
mm10_v2_chr11_-_101119814_101119849	0.00579283	UCACAUU	ENSMUST00000107295.3|Fam134c|ENSMUSG00000017802.8|family with sequence similarity 134, member C
mm10_v2_chr14_-_79481268_79481449	0.00561457	UCACAUU	ENSMUST00000022601.5|Wbp4|ENSMUSG00000022023.5|WW domain binding protein 4
mm10_v2_chr13_+_91741507_91741531	0.00541834	UCACAUU	ENSMUST00000022120.4|Acot12|ENSMUSG00000021620.4|acyl-CoA thioesterase 12
mm10_v2_chr15_+_4375462_4375511	0.00537394	UCACAUU	ENSMUST00000061925.4|Plcxd3|ENSMUSG00000049148.8|phosphatidylinositol-specific phospholipase C, X domain containing 3
mm10_v2_chr17_+_13760502_13760674	0.00534667	UCACAUU	ENSMUST00000139347.1|Mllt4|ENSMUSG00000068036.8|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENSMUST00000156591.1|Mllt4|ENSMUSG00000068036.8|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENSMUST00000170827.2|Mllt4|ENSMUSG00000068036.8|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENSMUST00000139666.1|Mllt4|ENSMUSG00000068036.8|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENSMUST00000137784.1|Mllt4|ENSMUSG00000068036.8|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENSMUST00000137708.1|Mllt4|ENSMUSG00000068036.8|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENSMUST00000150848.1|Mllt4|ENSMUSG00000068036.8|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4
mm10_v2_chr7_-_19310035_19310050	0.00525878	UCACAUU	ENSMUST00000003640.2|Fosb|ENSMUSG00000003545.2|FBJ osteosarcoma oncogene B
mm10_v2_chr2_+_119675062_119675095	0.00515299	UCACAUU	ENSMUST00000028767.8|Rtf1|ENSMUSG00000027304.9|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm10_v2_chr10_-_76725978_76726168	0.00513556	UCACAUU	ENSMUST00000001147.4|Col6a1|ENSMUSG00000001119.7|collagen, type VI, alpha 1
mm10_v2_chr2_-_26092149_26092177	0.00501843	UCACAUU	ENSMUST00000114159.2|Nacc2|ENSMUSG00000026932.8|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm10_v2_chr14_-_19977249_19977253	0.004972	UCACAUU	ENSMUST00000160013.1|Gng2|ENSMUSG00000043004.7|guanine nucleotide binding protein (G protein), gamma 2
mm10_v2_chr2_+_130906461_130906500	0.00496802	UCACAUU	ENSMUST00000028781.8|Atrn|ENSMUSG00000027312.8|attractin
mm10_v2_chr10_-_4388037_4388108	0.00493944	UCACAUU	ENSMUST00000100078.2|Zbtb2|ENSMUSG00000075327.3|zinc finger and BTB domain containing 2
mm10_v2_chr1_-_63114516_63114667	0.00492991	UCACAUU	ENSMUST00000097718.2|Ino80d|ENSMUSG00000040865.9|INO80 complex subunit D
mm10_v2_chr6_+_52713729_52713800	0.00488115	UCACAUU	ENSMUST00000080723.4|Tax1bp1|ENSMUSG00000004535.6|Tax1 (human T cell leukemia virus type I) binding protein 1 	ENSMUST00000149588.1|Tax1bp1|ENSMUSG00000004535.6|Tax1 (human T cell leukemia virus type I) binding protein 1
mm10_v2_chr8_-_78436640_78436649	0.00483859	UCACAUU	ENSMUST00000034115.3|Pou4f2|ENSMUSG00000031688.3|POU domain, class 4, transcription factor 2
mm10_v2_chr17_-_29007925_29007962	0.0047834	UCACAUU	ENSMUST00000009138.5|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38 	ENSMUST00000119274.1|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38
mm10_v2_chr11_-_89418948_89418948	0.00475522	UCACAUU	ENSMUST00000050983.1|4932411E22Rik|ENSMUSG00000047490.1|RIKEN cDNA 4932411E22 gene
mm10_v2_chr9_-_110462436_110462480	0.00473205	UCACAUU	ENSMUST00000111933.1|Klhl18|ENSMUSG00000054792.9|kelch-like 18
mm10_v2_chr1_-_82586781_82586849	0.00465652	UCACAUU	ENSMUST00000087050.5|Col4a4|ENSMUSG00000067158.8|collagen, type IV, alpha 4
mm10_v2_chr13_+_24801657_24801657	0.00446435	UCACAUU	ENSMUST00000019276.4|BC005537|ENSMUSG00000019132.4|cDNA sequence BC005537
mm10_v2_chr11_-_51756378_51756618	0.00437086	UCACAUU	ENSMUST00000109092.1|Sec24a|ENSMUSG00000036391.10|Sec24 related gene family, member A (S. cerevisiae) 	ENSMUST00000064297.4|Sec24a|ENSMUSG00000036391.10|Sec24 related gene family, member A (S. cerevisiae) 	ENSMUST00000109097.2|Sec24a|ENSMUSG00000036391.10|Sec24 related gene family, member A (S. cerevisiae)
mm10_v2_chr16_-_4213404_4213404	0.00436727	UCACAUU	ENSMUST00000023165.6|Crebbp|ENSMUSG00000022521.8|CREB binding protein
mm10_v2_chr11_-_106920681_106920735	0.00435396	UCACAUU	ENSMUST00000103067.3|Smurf2|ENSMUSG00000018363.10|SMAD specific E3 ubiquitin protein ligase 2
mm10_v2_chr7_+_36698002_36698118	0.00429856	UCACAUU	ENSMUST00000021641.6|Tshz3|ENSMUSG00000021217.6|teashirt zinc finger family member 3
mm10_v2_chr18_+_77938452_77938477	0.00429785	UCACAUU	ENSMUST00000044622.5|Epg5|ENSMUSG00000039840.7|ectopic P-granules autophagy protein 5 homolog (C. elegans)
mm10_v2_chr1_-_136346074_136346145	0.00425618	UCACAUU	ENSMUST00000048309.6|Camsap2|ENSMUSG00000041570.9|calmodulin regulated spectrin-associated protein family, member 2
mm10_v2_chr13_+_94875600_94875611	0.0042481	UCACAUU	ENSMUST00000022195.10|Otp|ENSMUSG00000021685.10|orthopedia homolog (Drosophila)
mm10_v2_chr12_+_69296676_69296798	0.00423812	UCACAUU	ENSMUST00000021362.4|Klhdc2|ENSMUSG00000020978.4|kelch domain containing 2
mm10_v2_chr11_+_67200052_67200111	0.00420277	UCACAUU	ENSMUST00000124516.1|Myh1|ENSMUSG00000056328.8|myosin, heavy polypeptide 1, skeletal muscle, adult 	ENSMUST00000018637.8|Myh1|ENSMUSG00000056328.8|myosin, heavy polypeptide 1, skeletal muscle, adult
mm10_v2_chr1_+_4807823_4807928	0.00415393	UCACAUU	ENSMUST00000027036.4|Lypla1|ENSMUSG00000025903.8|lysophospholipase 1 	ENSMUST00000119612.2|Lypla1|ENSMUSG00000025903.8|lysophospholipase 1 	ENSMUST00000137887.1|Lypla1|ENSMUSG00000025903.8|lysophospholipase 1 	ENSMUST00000115529.1|Lypla1|ENSMUSG00000025903.8|lysophospholipase 1 	ENSMUST00000150971.1|Lypla1|ENSMUSG00000025903.8|lysophospholipase 1
mm10_v2_chr17_-_27623441_27623495	0.00406046	UCACAUU	ENSMUST00000025050.5|Nudt3|ENSMUSG00000024213.7|nudix (nucleotide diphosphate linked moiety X)-type motif 3
mm10_v2_chr1_+_89454769_89454885	0.00393074	UCACAUU	ENSMUST00000027521.8|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 	ENSMUST00000074945.5|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm10_v2_chr3_-_9004686_9004750	0.00392304	UCACAUU	ENSMUST00000120143.1|Tpd52|ENSMUSG00000027506.9|tumor protein D52
mm10_v2_chr5_-_99252839_99252927	0.00378481	UCACAUU	ENSMUST00000168092.1|Rasgef1b|ENSMUSG00000029333.8|RasGEF domain family, member 1B 	ENSMUST00000031276.8|Rasgef1b|ENSMUSG00000029333.8|RasGEF domain family, member 1B
mm10_v2_chr5_-_20951769_20951824	0.00372488	UCACAUU	ENSMUST00000036489.5|Rsbn1l|ENSMUSG00000039968.5|round spermatid basic protein 1-like
mm10_v2_chr8_+_104340594_104340622	0.00371335	UCACAUU	ENSMUST00000034343.4|Cmtm3|ENSMUSG00000031875.6|CKLF-like MARVEL transmembrane domain containing 3
mm10_v2_chr5_-_92675125_92675145	0.0036879	UCACAUU	ENSMUST00000060930.3|Ccdc158|ENSMUSG00000050050.10|coiled-coil domain containing 158
mm10_v2_chr8_+_125910426_125910469	0.00363745	UCACAUU	ENSMUST00000034316.4|BC021891|ENSMUSG00000031853.4|cDNA sequence BC021891
mm10_v2_chr4_+_59805829_59805914	0.00356258	UCACAUU	ENSMUST00000030080.6|Snx30|ENSMUSG00000028385.8|sorting nexin family member 30
mm10_v2_chr9_-_115310421_115310447	0.00346127	UCACAUU	ENSMUST00000035010.8|Stt3b|ENSMUSG00000032437.9|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)
mm10_v2_chr10_+_95940663_95940703	0.00327329	UCACAUU	ENSMUST00000053484.6|Eea1|ENSMUSG00000036499.8|early endosome antigen 1
mm10_v2_chr5_-_137786651_137786668	0.00318191	UCACAUU	ENSMUST00000031740.9|Mepce|ENSMUSG00000029726.10|methylphosphate capping enzyme
mm10_v2_chr15_+_59648350_59648369	0.00316654	UCACAUU	ENSMUST00000067543.6|Trib1|ENSMUSG00000032501.8|tribbles homolog 1 (Drosophila)
mm10_v2_chr2_-_13011747_13011778	0.00310097	UCACAUU	ENSMUST00000061545.5|C1ql3|ENSMUSG00000049630.5|C1q-like 3
mm10_v2_chr3_-_69127098_69127113	0.00304378	UCACAUU	ENSMUST00000029353.2|Kpna4|ENSMUSG00000027782.4|karyopherin (importin) alpha 4
mm10_v2_chr6_-_92706145_92706234	0.00303921	UCACAUU	ENSMUST00000032093.5|Prickle2|ENSMUSG00000030020.7|prickle homolog 2 (Drosophila)
mm10_v2_chr8_+_117257019_117257107	0.00288407	UCACAUU	ENSMUST00000166750.1|Cmip|ENSMUSG00000034390.9|c-Maf inducing protein
mm10_v2_chr17_-_56584585_56584605	0.0028605	UCACAUU	ENSMUST00000075510.5|Safb2|ENSMUSG00000042625.10|scaffold attachment factor B2
mm10_v2_chr5_-_23616528_23616597	0.00273885	UCACAUU	ENSMUST00000088392.4|Srpk2|ENSMUSG00000062604.7|serine/arginine-rich protein specific kinase 2
mm10_v2_chr14_-_64949838_64949886	0.00254924	UCACAUU	ENSMUST00000067843.3|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000176489.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000175905.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000022544.7|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000175744.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000176128.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1
mm10_v2_chr1_+_191717834_191717904	0.00253234	UCACAUU	ENSMUST00000110855.1|Lpgat1|ENSMUSG00000026623.10|lysophosphatidylglycerol acyltransferase 1 	ENSMUST00000133076.1|Lpgat1|ENSMUSG00000026623.10|lysophosphatidylglycerol acyltransferase 1
mm10_v2_chr4_+_133130505_133130590	0.00238775	UCACAUU	ENSMUST00000084241.5|Wasf2|ENSMUSG00000028868.7|WAS protein family, member 2 	ENSMUST00000138831.1|Wasf2|ENSMUSG00000028868.7|WAS protein family, member 2
mm10_v2_chr10_+_93160824_93160894	0.00237575	UCACAUU	ENSMUST00000069965.7|Cdk17|ENSMUSG00000020015.9|cyclin-dependent kinase 17
mm10_v2_chr7_+_132859225_132859266	0.0023336	UCACAUU	ENSMUST00000084497.5|Fam175b|ENSMUSG00000030965.12|family with sequence similarity 175, member B 	ENSMUST00000181577.1|Fam175b|ENSMUSG00000030965.12|family with sequence similarity 175, member B 	ENSMUST00000106161.1|Fam175b|ENSMUSG00000030965.12|family with sequence similarity 175, member B
mm10_v2_chr7_+_110122299_110122350	0.00231377	UCACAUU	ENSMUST00000033326.8|Wee1|ENSMUSG00000031016.8|WEE 1 homolog 1 (S. pombe)
mm10_v2_chr8_-_87804411_87804463	0.0023028	UCACAUU	ENSMUST00000165770.2|Zfp423|ENSMUSG00000045333.9|zinc finger protein 423
mm10_v2_chr9_+_75037614_75037701	0.00221849	UCACAUU	ENSMUST00000168166.1|Arpp19|ENSMUSG00000007656.7|cAMP-regulated phosphoprotein 19 	ENSMUST00000169492.1|Arpp19|ENSMUSG00000007656.7|cAMP-regulated phosphoprotein 19 	ENSMUST00000170308.1|Arpp19|ENSMUSG00000007656.7|cAMP-regulated phosphoprotein 19
mm10_v2_chr1_+_57377593_57377689	0.00220208	UCACAUU	ENSMUST00000042734.2|1700066M21Rik|ENSMUSG00000038323.2|RIKEN cDNA 1700066M21 gene
mm10_v2_chr5_+_67306941_67306977	0.00211049	UCACAUU	ENSMUST00000162372.1|Slc30a9|ENSMUSG00000029221.9|solute carrier family 30 (zinc transporter), member 9 	ENSMUST00000113676.2|Slc30a9|ENSMUSG00000029221.9|solute carrier family 30 (zinc transporter), member 9
mm10_v2_chr17_-_88065291_88065291	0.00208035	UCACAUU	ENSMUST00000005504.8|Fbxo11|ENSMUSG00000005371.8|F-box protein 11
mm10_v2_chr4_-_110287479_110287534	0.00191142	UCACAUU	ENSMUST00000106598.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) 	ENSMUST00000102723.4|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) 	ENSMUST00000153906.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr16_-_45654083_45654118	0.00184196	UCACAUU	ENSMUST00000036732.7|BC016579|ENSMUSG00000033187.7|cDNA sequence, BC016579
mm10_v2_chr4_+_59626189_59626253	0.0018387	UCACAUU	ENSMUST00000070150.4|E130308A19Rik|ENSMUSG00000045071.7|RIKEN cDNA E130308A19 gene 	ENSMUST00000052420.6|E130308A19Rik|ENSMUSG00000045071.7|RIKEN cDNA E130308A19 gene
mm10_v2_chr5_-_106696819_106696839	0.00177509	UCACAUU	ENSMUST00000127434.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000112696.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000112698.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644
mm10_v2_chr6_-_148831448_148831494	0.00173016	UCACAUU	ENSMUST00000048418.7|Ipo8|ENSMUSG00000040029.8|importin 8
mm10_v2_chr11_-_85235065_85235137	0.00164169	UCACAUU	ENSMUST00000018625.9|Appbp2|ENSMUSG00000018481.9|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
mm10_v2_chr10_+_45289305_45289430	0.00148744	UCACAUU	ENSMUST00000019994.7|Popdc3|ENSMUSG00000019848.8|popeye domain containing 3 	ENSMUST00000161803.1|Popdc3|ENSMUSG00000019848.8|popeye domain containing 3
mm10_v2_chr6_-_28421680_28421741	0.0014836	UCACAUU	ENSMUST00000090511.3|Gcc1|ENSMUSG00000029708.9|golgi coiled coil 1
mm10_v2_chr16_-_96082389_96082481	0.00147655	UCACAUU	ENSMUST00000099502.2|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000023631.8|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000113829.1|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000153398.1|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1
mm10_v2_chr18_+_73573044_73573044	0.001373	UCACAUU	ENSMUST00000091852.4|Mex3c|ENSMUSG00000037253.8|mex3 homolog C (C. elegans)
mm10_v2_chr16_+_35983307_35983395	0.00137033	UCACAUU	ENSMUST00000004054.6|Kpna1|ENSMUSG00000022905.6|karyopherin (importin) alpha 1
mm10_v2_chr18_-_88894322_88894371	0.00099943	UCACAUU	ENSMUST00000070116.5|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6 	ENSMUST00000125362.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr7_-_4995298_4995340	0.000970133	UCACAUU	ENSMUST00000162731.1|Zfp579|ENSMUSG00000051550.10|zinc finger protein 579
mm10_v2_chr2_+_132263136_132263268	0.000935767	UCACAUU	ENSMUST00000110158.1|Cds2|ENSMUSG00000058793.8|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2 	ENSMUST00000103181.4|Cds2|ENSMUSG00000058793.8|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2
mm10_v2_chr19_+_32757497_32757587	0.000920889	UCACAUU	ENSMUST00000013807.7|Pten|ENSMUSG00000013663.7|phosphatase and tensin homolog
mm10_v2_chr17_+_56584973_56585059	0.000902007	UCACAUU	ENSMUST00000182533.1|Safb|ENSMUSG00000071054.6|scaffold attachment factor B 	ENSMUST00000182800.1|Safb|ENSMUSG00000071054.6|scaffold attachment factor B 	ENSMUST00000095224.4|Safb|ENSMUSG00000071054.6|scaffold attachment factor B
mm10_v2_chr7_+_112679314_112679325	0.000795673	UCACAUU	ENSMUST00000084705.5|Tead1|ENSMUSG00000055320.10|TEA domain family member 1 	ENSMUST00000059768.10|Tead1|ENSMUSG00000055320.10|TEA domain family member 1
mm10_v2_chr3_+_16183177_16183206	0.000764596	UCACAUU	ENSMUST00000108345.2|Ythdf3|ENSMUSG00000047213.8|YTH domain family 3 	ENSMUST00000108346.2|Ythdf3|ENSMUSG00000047213.8|YTH domain family 3
mm10_v2_chr18_+_36281069_36281151	0.000738794	UCACAUU	ENSMUST00000051301.3|Pura|ENSMUSG00000043991.3|purine rich element binding protein A
mm10_v2_chr9_-_52168111_52168111	0.000729789	UCACAUU	ENSMUST00000165519.1|Zc3h12c|ENSMUSG00000035164.7|zinc finger CCCH type containing 12C
mm10_v2_chr3_-_133544390_133544412	0.0006885	UCACAUU	ENSMUST00000098603.3|Tet2|ENSMUSG00000040943.8|tet methylcytosine dioxygenase 2
mm10_v2_chr2_+_29124972_29125048	0.000670806	UCACAUU	ENSMUST00000061578.2|Setx|ENSMUSG00000043535.7|senataxin
mm10_v2_chr10_-_115384388_115384435	0.000634745	UCACAUU	ENSMUST00000020346.4|Thap2|ENSMUSG00000020137.4|THAP domain containing, apoptosis associated protein 2
mm10_v2_chr19_-_7105729_7105729	0.00062244	UCACAUU	ENSMUST00000113383.2|Flrt1|ENSMUSG00000047787.7|fibronectin leucine rich transmembrane protein 1
mm10_v2_chr11_-_84870712_84870807	0.000521395	UCACAUU	ENSMUST00000170741.1|Ggnbp2|ENSMUSG00000020530.8|gametogenetin binding protein 2 	ENSMUST00000172405.1|Ggnbp2|ENSMUSG00000020530.8|gametogenetin binding protein 2 	ENSMUST00000100686.3|Ggnbp2|ENSMUSG00000020530.8|gametogenetin binding protein 2 	ENSMUST00000108081.2|Ggnbp2|ENSMUSG00000020530.8|gametogenetin binding protein 2
mm10_v2_chr1_-_74951651_74951678	0.000459296	UCACAUU	ENSMUST00000164097.1|Ihh|ENSMUSG00000006538.9|Indian hedgehog
mm10_v2_chr10_+_56377300_56377338	0.000440474	UCACAUU	ENSMUST00000068581.7|Gja1|ENSMUSG00000050953.9|gap junction protein, alpha 1
mm10_v2_chr13_+_49341549_49341623	0.000398244	UCACAUU	ENSMUST00000110084.2|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila) 	ENSMUST00000048544.6|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila) 	ENSMUST00000110085.3|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila)
mm10_v2_chr13_-_52929640_52929681	0.000342729	UCACAUU	ENSMUST00000120535.1|Auh|ENSMUSG00000021460.10|AU RNA binding protein/enoyl-coenzyme A hydratase 	ENSMUST00000119311.1|Auh|ENSMUSG00000021460.10|AU RNA binding protein/enoyl-coenzyme A hydratase 	ENSMUST00000021913.9|Auh|ENSMUSG00000021460.10|AU RNA binding protein/enoyl-coenzyme A hydratase 	ENSMUST00000110031.3|Auh|ENSMUSG00000021460.10|AU RNA binding protein/enoyl-coenzyme A hydratase
mm10_v2_chr2_-_34826071_34826087	0.000306756	UCACAUU	ENSMUST00000113077.1|Fbxw2|ENSMUSG00000035949.9|F-box and WD-40 domain protein 2 	ENSMUST00000028220.3|Fbxw2|ENSMUSG00000035949.9|F-box and WD-40 domain protein 2
mm10_v2_chr15_-_10713537_10713544	0.00017275	UCACAUU	ENSMUST00000090339.3|Rai14|ENSMUSG00000022246.7|retinoic acid induced 14
mm10_v2_chr19_-_59943647_59943678	0.000133784	UCACAUU	ENSMUST00000171986.1|Rab11fip2|ENSMUSG00000040022.8|RAB11 family interacting protein 2 (class I)
mm10_v2_chr8_+_108714644_108714644	6.65802e-05	UCACAUU	ENSMUST00000043896.8|Zfhx3|ENSMUSG00000038872.8|zinc finger homeobox 3
mm10_v2_chr7_+_139389072_139389161	3.20438e-05	UCACAUU	ENSMUST00000106098.1|Inpp5a|ENSMUSG00000025477.7|inositol polyphosphate-5-phosphatase A 	ENSMUST00000026550.7|Inpp5a|ENSMUSG00000025477.7|inositol polyphosphate-5-phosphatase A
mm10_v2_chr12_-_57546121_57546141	2.00386e-05	UCACAUU	ENSMUST00000044380.6|Foxa1|ENSMUSG00000035451.6|forkhead box A1
