mm10_v2_chr5_+_142960343_142960363	0.510173	UCCAGUU	ENSMUST00000031565.8|Fscn1|ENSMUSG00000029581.8|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)
mm10_v2_chr8_-_18741542_18741566	0.458184	UCCAGUU	ENSMUST00000033846.6|Angpt2|ENSMUSG00000031465.6|angiopoietin 2
mm10_v2_chr16_+_45094036_45094053	0.342522	UCCAGUU	ENSMUST00000061050.5|Ccdc80|ENSMUSG00000022665.8|coiled-coil domain containing 80
mm10_v2_chr9_-_32541589_32541602	0.279955	UCCAGUU	ENSMUST00000016231.7|Fli1|ENSMUSG00000016087.7|Friend leukemia integration 1
mm10_v2_chr8_-_115707778_115707794	0.265079	UCCAGUU	ENSMUST00000109104.1|Maf|ENSMUSG00000055435.6|avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog
mm10_v2_chr4_-_55532453_55532485	0.2586	UCCAGUU	ENSMUST00000132746.1|Klf4|ENSMUSG00000003032.8|Kruppel-like factor 4 (gut) 	ENSMUST00000107619.2|Klf4|ENSMUSG00000003032.8|Kruppel-like factor 4 (gut)
mm10_v2_chr18_-_52529847_52529890	0.257062	UCCAGUU	ENSMUST00000171470.1|Lox|ENSMUSG00000024529.7|lysyl oxidase
mm10_v2_chr15_-_55906917_55906957	0.223177	UCCAGUU	ENSMUST00000039769.5|Sntb1|ENSMUSG00000060429.5|syntrophin, basic 1
mm10_v2_chr15_+_40655020_40655054	0.213553	UCCAGUU	ENSMUST00000053467.4|Zfpm2|ENSMUSG00000022306.8|zinc finger protein, multitype 2
mm10_v2_chr4_+_124986430_124986490	0.2132	UCCAGUU	ENSMUST00000030687.7|Rspo1|ENSMUSG00000028871.7|R-spondin homolog (Xenopus laevis)
mm10_v2_chr6_+_30738044_30738059	0.192006	UCCAGUU	ENSMUST00000128398.1|Mest|ENSMUSG00000051855.9|mesoderm specific transcript 	ENSMUST00000163949.2|Mest|ENSMUSG00000051855.9|mesoderm specific transcript 	ENSMUST00000124665.1|Mest|ENSMUSG00000051855.9|mesoderm specific transcript
mm10_v2_chr15_+_6386598_6386785	0.17699	UCCAGUU	ENSMUST00000080880.5|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein 	ENSMUST00000110664.2|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein 	ENSMUST00000110663.2|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein 	ENSMUST00000161812.1|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein 	ENSMUST00000160134.1|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein
mm10_v2_chr11_+_44617310_44617336	0.175943	UCCAGUU	ENSMUST00000081265.5|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000101326.3|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000109268.1|Ebf1|ENSMUSG00000057098.8|early B cell factor 1
mm10_v2_chr11_+_46055973_46056068	0.175025	UCCAGUU	ENSMUST00000011400.7|Adam19|ENSMUSG00000011256.10|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm10_v2_chr17_+_80944611_80944644	0.164307	UCCAGUU	ENSMUST00000025092.4|Tmem178|ENSMUSG00000024245.4|transmembrane protein 178
mm10_v2_chr9_-_63757933_63757994	0.158475	UCCAGUU	ENSMUST00000034973.3|Smad3|ENSMUSG00000032402.6|SMAD family member 3
mm10_v2_chr8_-_36613937_36613948	0.158293	UCCAGUU	ENSMUST00000033923.7|Dlc1|ENSMUSG00000031523.10|deleted in liver cancer 1
mm10_v2_chrX_-_133898399_133898429	0.155897	UCCAGUU	ENSMUST00000087557.5|Tspan6|ENSMUSG00000067377.6|tetraspanin 6
mm10_v2_chr13_+_94057757_94057838	0.144607	UCCAGUU	ENSMUST00000054274.1|Lhfpl2|ENSMUSG00000045312.5|lipoma HMGIC fusion partner-like 2
mm10_v2_chr3_-_145649970_145649992	0.144424	UCCAGUU	ENSMUST00000029846.3|Cyr61|ENSMUSG00000028195.3|cysteine rich protein 61
mm10_v2_chr12_-_27342696_27342726	0.137012	UCCAGUU	ENSMUST00000079063.5|Sox11|ENSMUSG00000063632.5|SRY-box containing gene 11
mm10_v2_chr18_-_13972617_13972733	0.129457	UCCAGUU	ENSMUST00000025288.7|Zfp521|ENSMUSG00000024420.8|zinc finger protein 521
mm10_v2_chr9_-_116175318_116175363	0.127544	UCCAGUU	ENSMUST00000061101.4|Tgfbr2|ENSMUSG00000032440.6|transforming growth factor, beta receptor II 	ENSMUST00000035014.6|Tgfbr2|ENSMUSG00000032440.6|transforming growth factor, beta receptor II
mm10_v2_chr11_-_12037391_12037407	0.122368	UCCAGUU	ENSMUST00000093321.5|Grb10|ENSMUSG00000020176.11|growth factor receptor bound protein 10
mm10_v2_chr4_-_116167591_116167607	0.118889	UCCAGUU	ENSMUST00000030465.3|Tspan1|ENSMUSG00000028699.3|tetraspanin 1 	ENSMUST00000143426.1|Tspan1|ENSMUSG00000028699.3|tetraspanin 1
mm10_v2_chr19_-_10240689_10240751	0.1178	UCCAGUU	ENSMUST00000088013.5|Myrf|ENSMUSG00000036098.9|myelin regulatory factor
mm10_v2_chr15_+_99126513_99126616	0.116204	UCCAGUU	ENSMUST00000063517.4|Spats2|ENSMUSG00000051934.4|spermatogenesis associated, serine-rich 2
mm10_v2_chr13_+_20090538_20090633	0.11571	UCCAGUU	ENSMUST00000072519.5|Elmo1|ENSMUSG00000041112.9|engulfment and cell motility 1
mm10_v2_chr3_+_121953213_121953295	0.114214	UCCAGUU	ENSMUST00000037958.7|Arhgap29|ENSMUSG00000039831.10|Rho GTPase activating protein 29 	ENSMUST00000128366.1|Arhgap29|ENSMUSG00000039831.10|Rho GTPase activating protein 29
mm10_v2_chr4_+_62559825_62559847	0.111331	UCCAGUU	ENSMUST00000065870.7|Rgs3|ENSMUSG00000059810.12|regulator of G-protein signaling 3
mm10_v2_chr14_+_69029289_69029414	0.10986	UCCAGUU	ENSMUST00000014957.8|Stc1|ENSMUSG00000014813.8|stanniocalcin 1
mm10_v2_chr1_-_119422239_119422291	0.10844	UCCAGUU	ENSMUST00000038765.5|Inhbb|ENSMUSG00000037035.5|inhibin beta-B
mm10_v2_chr5_-_137072254_137072277	0.107754	UCCAGUU	ENSMUST00000077523.3|Serpine1|ENSMUSG00000037411.4|serine (or cysteine) peptidase inhibitor, clade E, member 1 	ENSMUST00000041388.4|Serpine1|ENSMUSG00000037411.4|serine (or cysteine) peptidase inhibitor, clade E, member 1
mm10_v2_chr17_+_78200240_78200258	0.107659	UCCAGUU	ENSMUST00000112498.2|Crim1|ENSMUSG00000024074.7|cysteine rich transmembrane BMP regulator 1 (chordin like)
mm10_v2_chr8_+_119992438_119992526	0.107613	UCCAGUU	ENSMUST00000132583.1|Crispld2|ENSMUSG00000031825.10|cysteine-rich secretory protein LCCL domain containing 2 	ENSMUST00000034282.9|Crispld2|ENSMUSG00000031825.10|cysteine-rich secretory protein LCCL domain containing 2
mm10_v2_chr13_-_107890059_107890073	0.107502	UCCAGUU	ENSMUST00000105097.2|Zswim6|ENSMUSG00000032846.9|zinc finger SWIM-type containing 6
mm10_v2_chr4_-_35157404_35157500	0.106614	UCCAGUU	ENSMUST00000102975.3|Mob3b|ENSMUSG00000073910.4|MOB kinase activator 3B
mm10_v2_chr9_-_62537036_62537061	0.104881	UCCAGUU	ENSMUST00000048043.5|Coro2b|ENSMUSG00000041729.9|coronin, actin binding protein, 2B
mm10_v2_chr3_+_126596951_126596986	0.102482	UCCAGUU	ENSMUST00000106402.1|Camk2d|ENSMUSG00000053819.10|calcium/calmodulin-dependent protein kinase II, delta
mm10_v2_chr13_-_41487306_41487346	0.101709	UCCAGUU	ENSMUST00000021794.6|Nedd9|ENSMUSG00000021365.8|neural precursor cell expressed, developmentally down-regulated gene 9
mm10_v2_chr12_-_86079019_86079041	0.100707	UCCAGUU	ENSMUST00000003687.6|Tgfb3|ENSMUSG00000021253.6|transforming growth factor, beta 3
mm10_v2_chr3_+_116594959_116595031	0.0979275	UCCAGUU	ENSMUST00000029571.8|Sass6|ENSMUSG00000027959.9|spindle assembly 6 homolog (C. elegans)
mm10_v2_chrX_-_103821940_103821992	0.0970757	UCCAGUU	ENSMUST00000042664.5|Slc16a2|ENSMUSG00000033965.6|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm10_v2_chr2_-_132029845_132030001	0.0937567	UCCAGUU	ENSMUST00000028814.8|Rassf2|ENSMUSG00000027339.9|Ras association (RalGDS/AF-6) domain family member 2
mm10_v2_chr12_-_64965496_64965538	0.0934029	UCCAGUU	ENSMUST00000021331.7|Klhl28|ENSMUSG00000020948.8|kelch-like 28
mm10_v2_chr10_+_93641041_93641056	0.0925705	UCCAGUU	ENSMUST00000020204.4|Ntn4|ENSMUSG00000020019.4|netrin 4
mm10_v2_chr14_-_40966807_40966848	0.0902494	UCCAGUU	ENSMUST00000047652.5|Tspan14|ENSMUSG00000037824.5|tetraspanin 14
mm10_v2_chr10_-_9675163_9675243	0.0886199	UCCAGUU	ENSMUST00000100070.2|Samd5|ENSMUSG00000060487.5|sterile alpha motif domain containing 5
mm10_v2_chr1_+_59482133_59482179	0.085569	UCCAGUU	ENSMUST00000114246.2|Fzd7|ENSMUSG00000041075.7|frizzled homolog 7 (Drosophila) 	ENSMUST00000037105.6|Fzd7|ENSMUSG00000041075.7|frizzled homolog 7 (Drosophila)
mm10_v2_chr11_+_77216180_77216287	0.0849587	UCCAGUU	ENSMUST00000037912.5|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila) 	ENSMUST00000156488.1|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila)
mm10_v2_chr3_-_50443603_50443615	0.0843394	UCCAGUU	ENSMUST00000029297.4|Slc7a11|ENSMUSG00000027737.5|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm10_v2_chr7_-_137314394_137314445	0.0816578	UCCAGUU	ENSMUST00000168203.1|Ebf3|ENSMUSG00000010476.7|early B cell factor 3 	ENSMUST00000106118.2|Ebf3|ENSMUSG00000010476.7|early B cell factor 3 	ENSMUST00000169486.2|Ebf3|ENSMUSG00000010476.7|early B cell factor 3 	ENSMUST00000033378.5|Ebf3|ENSMUSG00000010476.7|early B cell factor 3
mm10_v2_chr12_-_119238794_119238863	0.0811512	UCCAGUU	ENSMUST00000026360.8|Itgb8|ENSMUSG00000025321.8|integrin beta 8
mm10_v2_chr10_-_44458715_44458751	0.0811095	UCCAGUU	ENSMUST00000039174.4|Prdm1|ENSMUSG00000038151.6|PR domain containing 1, with ZNF domain
mm10_v2_chr7_+_89404356_89404367	0.0803518	UCCAGUU	ENSMUST00000058755.3|Fzd4|ENSMUSG00000049791.3|frizzled homolog 4 (Drosophila)
mm10_v2_chr16_-_85901118_85901133	0.0748964	UCCAGUU	ENSMUST00000023611.5|Adamts5|ENSMUSG00000022894.5|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm10_v2_chr4_+_100776664_100776692	0.0745179	UCCAGUU	ENSMUST00000030257.8|Cachd1|ENSMUSG00000028532.8|cache domain containing 1 	ENSMUST00000097955.2|Cachd1|ENSMUSG00000028532.8|cache domain containing 1
mm10_v2_chr6_+_83135812_83135874	0.073799	UCCAGUU	ENSMUST00000065512.4|Rtkn|ENSMUSG00000034930.9|rhotekin
mm10_v2_chr8_-_47990535_47990577	0.0735946	UCCAGUU	ENSMUST00000057561.7|Wwc2|ENSMUSG00000031563.7|WW, C2 and coiled-coil domain containing 2
mm10_v2_chr1_-_186705980_186705999	0.0724359	UCCAGUU	ENSMUST00000045288.8|Tgfb2|ENSMUSG00000039239.9|transforming growth factor, beta 2
mm10_v2_chr13_-_3918157_3918220	0.0707339	UCCAGUU	ENSMUST00000091853.4|Net1|ENSMUSG00000021215.8|neuroepithelial cell transforming gene 1
mm10_v2_chr5_-_86172747_86172803	0.0704354	UCCAGUU	ENSMUST00000039373.7|Uba6|ENSMUSG00000035898.7|ubiquitin-like modifier activating enzyme 6
mm10_v2_chr6_-_115994953_115995010	0.070248	UCCAGUU	ENSMUST00000015511.8|Plxnd1|ENSMUSG00000030123.9|plexin D1
mm10_v2_chr19_+_53677286_53677306	0.0675309	UCCAGUU	ENSMUST00000095969.3|Rbm20|ENSMUSG00000043639.8|RNA binding motif protein 20 	ENSMUST00000164202.1|Rbm20|ENSMUSG00000043639.8|RNA binding motif protein 20
mm10_v2_chr19_+_53140430_53140449	0.0671785	UCCAGUU	ENSMUST00000111741.2|Add3|ENSMUSG00000025026.8|adducin 3 (gamma)
mm10_v2_chr12_-_54862783_54862921	0.0650832	UCCAGUU	ENSMUST00000078124.7|Cfl2|ENSMUSG00000062929.7|cofilin 2, muscle
mm10_v2_chr9_-_75559604_75559665	0.0646739	UCCAGUU	ENSMUST00000072232.7|Tmod3|ENSMUSG00000058587.7|tropomodulin 3
mm10_v2_chr10_+_4266323_4266341	0.0646731	UCCAGUU	ENSMUST00000045730.5|Akap12|ENSMUSG00000038587.8|A kinase (PRKA) anchor protein (gravin) 12
mm10_v2_chr7_-_118491912_118491975	0.0631704	UCCAGUU	ENSMUST00000178344.1|Itpripl2|ENSMUSG00000095115.1|inositol 1,4,5-triphosphate receptor interacting protein-like 2
mm10_v2_chr4_-_82505749_82505802	0.0626736	UCCAGUU	ENSMUST00000107245.2|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000107246.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr6_-_52204415_52204587	0.0621739	UCCAGUU	ENSMUST00000048794.6|Hoxa5|ENSMUSG00000038253.6|homeobox A5
mm10_v2_chr11_+_116843278_116843278	0.0582106	UCCAGUU	ENSMUST00000106370.3|Mettl23|ENSMUSG00000090266.4|methyltransferase like 23
mm10_v2_chr5_-_142906702_142906754	0.0570868	UCCAGUU	ENSMUST00000167721.1|Actb|ENSMUSG00000029580.8|actin, beta 	ENSMUST00000163829.1|Actb|ENSMUSG00000029580.8|actin, beta 	ENSMUST00000100497.4|Actb|ENSMUSG00000029580.8|actin, beta
mm10_v2_chr8_+_72135247_72135264	0.0567492	UCCAGUU	ENSMUST00000003575.9|Tpm4|ENSMUSG00000031799.9|tropomyosin 4
mm10_v2_chr16_-_5132458_5132483	0.055862	UCCAGUU	ENSMUST00000035672.3|Ppl|ENSMUSG00000039457.3|periplakin
mm10_v2_chr12_+_21111720_21111776	0.0549304	UCCAGUU	ENSMUST00000064595.8|Asap2|ENSMUSG00000052632.9|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 	ENSMUST00000101562.4|Asap2|ENSMUSG00000052632.9|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 	ENSMUST00000090834.6|Asap2|ENSMUSG00000052632.9|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm10_v2_chr6_-_112947246_112947277	0.0545881	UCCAGUU	ENSMUST00000088373.4|Srgap3|ENSMUSG00000030257.10|SLIT-ROBO Rho GTPase activating protein 3
mm10_v2_chr17_-_68004075_68004140	0.0544492	UCCAGUU	ENSMUST00000024840.5|Arhgap28|ENSMUSG00000024043.7|Rho GTPase activating protein 28
mm10_v2_chr11_-_69685537_69685565	0.0538871	UCCAGUU	ENSMUST00000018896.7|Tnfsf13|ENSMUSG00000089669.1|tumor necrosis factor (ligand) superfamily, member 13
mm10_v2_chr10_-_22731336_22731447	0.0536843	UCCAGUU	ENSMUST00000127698.1|Tbpl1|ENSMUSG00000071359.7|TATA box binding protein-like 1
mm10_v2_chr2_-_102186322_102186394	0.0513657	UCCAGUU	ENSMUST00000111222.1|Ldlrad3|ENSMUSG00000048058.11|low density lipoprotein receptor class A domain containing 3 	ENSMUST00000058790.5|Ldlrad3|ENSMUSG00000048058.11|low density lipoprotein receptor class A domain containing 3
mm10_v2_chr14_+_8080315_8080385	0.0496159	UCCAGUU	ENSMUST00000023924.3|Rpp14|ENSMUSG00000023156.3|ribonuclease P 14 subunit
mm10_v2_chr5_-_140389188_140389254	0.0486268	UCCAGUU	ENSMUST00000031539.7|Snx8|ENSMUSG00000029560.8|sorting nexin 8
mm10_v2_chr7_-_34313531_34313568	0.0485682	UCCAGUU	ENSMUST00000108074.1|4931406P16Rik|ENSMUSG00000066571.7|RIKEN cDNA 4931406P16 gene
mm10_v2_chr9_+_32696005_32696121	0.0482888	UCCAGUU	ENSMUST00000034534.6|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000050797.7|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000184887.1|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain
mm10_v2_chr14_-_48665098_48665246	0.0482332	UCCAGUU	ENSMUST00000118578.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila)
mm10_v2_chr11_-_69696058_69696102	0.0478534	UCCAGUU	ENSMUST00000180587.1|Tnfsf12|ENSMUSG00000097328.1|tumor necrosis factor (ligand) superfamily, member 12 	ENSMUST00000094070.4|BC096441|ENSMUSG00000018752.13|cDNA sequence BC096441
mm10_v2_chr2_-_32431104_32431178	0.0477842	UCCAGUU	ENSMUST00000127961.1|Slc25a25|ENSMUSG00000026819.9|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 	ENSMUST00000136361.1|Slc25a25|ENSMUSG00000026819.9|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 	ENSMUST00000052119.7|Slc25a25|ENSMUSG00000026819.9|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
mm10_v2_chr18_+_64340225_64340364	0.0476182	UCCAGUU	ENSMUST00000175965.2|Onecut2|ENSMUSG00000045991.12|one cut domain, family member 2 	ENSMUST00000115145.3|Onecut2|ENSMUSG00000045991.12|one cut domain, family member 2
mm10_v2_chr2_-_181459364_181459439	0.047496	UCCAGUU	ENSMUST00000155535.1|Zbtb46|ENSMUSG00000027583.7|zinc finger and BTB domain containing 46 	ENSMUST00000029106.6|Zbtb46|ENSMUSG00000027583.7|zinc finger and BTB domain containing 46 	ENSMUST00000087409.3|Zbtb46|ENSMUSG00000027583.7|zinc finger and BTB domain containing 46
mm10_v2_chr14_-_121797670_121797753	0.0459149	UCCAGUU	ENSMUST00000100299.3|Dock9|ENSMUSG00000025558.9|dedicator of cytokinesis 9
mm10_v2_chr2_-_72980402_72980471	0.0454432	UCCAGUU	ENSMUST00000066003.6|Sp3|ENSMUSG00000027109.10|trans-acting transcription factor 3 	ENSMUST00000102689.3|Sp3|ENSMUSG00000027109.10|trans-acting transcription factor 3
mm10_v2_chr17_-_71002488_71002592	0.0454212	UCCAGUU	ENSMUST00000148960.1|Myl12a|ENSMUSG00000024048.8|myosin, light chain 12A, regulatory, non-sarcomeric
mm10_v2_chr18_+_69345721_69345811	0.0445196	UCCAGUU	ENSMUST00000078486.6|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114982.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr5_+_121711609_121711609	0.0433017	UCCAGUU	ENSMUST00000051950.7|Atxn2|ENSMUSG00000042605.9|ataxin 2
mm10_v2_chr5_+_115506668_115506808	0.0423592	UCCAGUU	ENSMUST00000067268.8|Pxn|ENSMUSG00000029528.11|paxillin 	ENSMUST00000086523.3|Pxn|ENSMUSG00000029528.11|paxillin
mm10_v2_chr11_+_52232009_52232041	0.0420752	UCCAGUU	ENSMUST00000037324.5|Skp1a|ENSMUSG00000036309.8|S-phase kinase-associated protein 1A 	ENSMUST00000166537.1|Skp1a|ENSMUSG00000036309.8|S-phase kinase-associated protein 1A
mm10_v2_chr10_-_61452658_61452813	0.041971	UCCAGUU	ENSMUST00000167087.1|Eif4ebp2|ENSMUSG00000020091.8|eukaryotic translation initiation factor 4E binding protein 2 	ENSMUST00000020288.7|Eif4ebp2|ENSMUSG00000020091.8|eukaryotic translation initiation factor 4E binding protein 2
mm10_v2_chr6_-_31563978_31563989	0.0418719	UCCAGUU	ENSMUST00000026698.7|Podxl|ENSMUSG00000025608.9|podocalyxin-like
mm10_v2_chr3_-_129970152_129970206	0.0415624	UCCAGUU	ENSMUST00000029624.8|Ccdc109b|ENSMUSG00000027994.8|coiled-coil domain containing 109B
mm10_v2_chr13_-_93192270_93192328	0.0413191	UCCAGUU	ENSMUST00000048702.5|Papd4|ENSMUSG00000042167.5|PAP associated domain containing 4
mm10_v2_chr1_-_136346074_136346145	0.041216	UCCAGUU	ENSMUST00000048309.6|Camsap2|ENSMUSG00000041570.9|calmodulin regulated spectrin-associated protein family, member 2
mm10_v2_chr3_+_103058302_103058352	0.0410323	UCCAGUU	ENSMUST00000029445.6|Nras|ENSMUSG00000027852.8|neuroblastoma ras oncogene
mm10_v2_chr12_+_37241633_37241654	0.0407097	UCCAGUU	ENSMUST00000049874.7|Agmo|ENSMUSG00000050103.11|alkylglycerol monooxygenase
mm10_v2_chr2_-_166155624_166155671	0.040477	UCCAGUU	ENSMUST00000109249.2|Sulf2|ENSMUSG00000006800.7|sulfatase 2
mm10_v2_chr14_-_98169542_98169595	0.040065	UCCAGUU	ENSMUST00000069334.7|Dach1|ENSMUSG00000055639.10|dachshund 1 (Drosophila) 	ENSMUST00000071533.6|Dach1|ENSMUSG00000055639.10|dachshund 1 (Drosophila)
mm10_v2_chr2_+_156196642_156196775	0.0396003	UCCAGUU	ENSMUST00000037401.8|Phf20|ENSMUSG00000038116.10|PHD finger protein 20
mm10_v2_chr10_+_19934472_19934526	0.0395357	UCCAGUU	ENSMUST00000095806.3|Map3k5|ENSMUSG00000071369.4|mitogen-activated protein kinase kinase kinase 5 	ENSMUST00000120259.1|Map3k5|ENSMUSG00000071369.4|mitogen-activated protein kinase kinase kinase 5
mm10_v2_chr11_+_115381906_115381933	0.0393792	UCCAGUU	ENSMUST00000053288.5|Cdr2l|ENSMUSG00000050910.5|cerebellar degeneration-related protein 2-like
mm10_v2_chr10_+_71347736_71347763	0.0386097	UCCAGUU	ENSMUST00000079252.6|Ipmk|ENSMUSG00000060733.7|inositol polyphosphate multikinase
mm10_v2_chr9_+_106453838_106453911	0.0382327	UCCAGUU	ENSMUST00000024260.6|Pcbp4|ENSMUSG00000023495.6|poly(rC) binding protein 4
mm10_v2_chr4_+_129820702_129820709	0.0375676	UCCAGUU	ENSMUST00000165853.1|Ptp4a2|ENSMUSG00000028788.8|protein tyrosine phosphatase 4a2
mm10_v2_chr5_-_21055880_21055961	0.0374867	UCCAGUU	ENSMUST00000030556.7|Ptpn12|ENSMUSG00000028771.7|protein tyrosine phosphatase, non-receptor type 12
mm10_v2_chr9_+_45042425_45042551	0.0369504	UCCAGUU	ENSMUST00000034600.4|Mpzl2|ENSMUSG00000032092.4|myelin protein zero-like 2
mm10_v2_chr5_-_24030649_24030707	0.0358809	UCCAGUU	ENSMUST00000030849.6|Fam126a|ENSMUSG00000028995.8|family with sequence similarity 126, member A
mm10_v2_chr5_+_98854434_98854466	0.0358805	UCCAGUU	ENSMUST00000031278.4|Bmp3|ENSMUSG00000029335.4|bone morphogenetic protein 3
mm10_v2_chr5_+_30232581_30232680	0.0356603	UCCAGUU	ENSMUST00000145167.1|Ept1|ENSMUSG00000075703.9|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)
mm10_v2_chr16_+_4639941_4639978	0.0355569	UCCAGUU	ENSMUST00000038770.3|Vasn|ENSMUSG00000039646.5|vasorin
mm10_v2_chr2_-_84650714_84650749	0.0354171	UCCAGUU	ENSMUST00000111697.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111670.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111696.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111678.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111690.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111695.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111677.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111698.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000099941.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111676.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111694.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111675.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111689.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111687.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111692.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111685.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111686.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111688.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111693.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111684.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1
mm10_v2_chr14_-_31830402_31830440	0.0351012	UCCAGUU	ENSMUST00000014640.7|Ankrd28|ENSMUSG00000014496.7|ankyrin repeat domain 28
mm10_v2_chr8_-_94037007_94037027	0.0345292	UCCAGUU	ENSMUST00000034204.9|Nudt21|ENSMUSG00000031754.9|nudix (nucleoside diphosphate linked moiety X)-type motif 21
mm10_v2_chr16_+_14361552_14361601	0.0342834	UCCAGUU	ENSMUST00000100167.3|Abcc1|ENSMUSG00000023088.10|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENSMUST00000154748.1|Abcc1|ENSMUSG00000023088.10|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENSMUST00000134776.1|Abcc1|ENSMUSG00000023088.10|ATP-binding cassette, sub-family C (CFTR/MRP), member 1
mm10_v2_chr12_-_21373550_21373593	0.033407	UCCAGUU	ENSMUST00000101551.3|Adam17|ENSMUSG00000052593.9|a disintegrin and metallopeptidase domain 17
mm10_v2_chr10_-_14544972_14545036	0.0319041	UCCAGUU	ENSMUST00000041168.4|Gpr126|ENSMUSG00000039116.4|G protein-coupled receptor 126
mm10_v2_chr3_+_136670076_136670186	0.0317984	UCCAGUU	ENSMUST00000070198.7|Ppp3ca|ENSMUSG00000028161.11|protein phosphatase 3, catalytic subunit, alpha isoform
mm10_v2_chr18_+_38993126_38993186	0.0312345	UCCAGUU	ENSMUST00000097593.2|Arhgap26|ENSMUSG00000036452.11|Rho GTPase activating protein 26
mm10_v2_chr1_-_175491130_175491130	0.0309737	UCCAGUU	ENSMUST00000027812.5|Rgs7|ENSMUSG00000026527.8|regulator of G protein signaling 7
mm10_v2_chr5_-_74068361_74068438	0.0304961	UCCAGUU	ENSMUST00000119154.1|Usp46|ENSMUSG00000054814.8|ubiquitin specific peptidase 46 	ENSMUST00000068058.7|Usp46|ENSMUSG00000054814.8|ubiquitin specific peptidase 46
mm10_v2_chr1_+_172499948_172500047	0.0301962	UCCAGUU	ENSMUST00000111230.1|Tagln2|ENSMUSG00000026547.9|transgelin 2
mm10_v2_chrX_-_7741288_7741341	0.030164	UCCAGUU	ENSMUST00000033490.6|Ccdc120|ENSMUSG00000031150.6|coiled-coil domain containing 120
mm10_v2_chr9_-_79718518_79718592	0.0300688	UCCAGUU	ENSMUST00000071750.6|Col12a1|ENSMUSG00000032332.11|collagen, type XII, alpha 1
mm10_v2_chr5_+_32611171_32611245	0.0296785	UCCAGUU	ENSMUST00000072311.6|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1 	ENSMUST00000168707.2|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1
mm10_v2_chr1_-_43827751_43827800	0.0289278	UCCAGUU	ENSMUST00000128261.1|Uxs1|ENSMUSG00000057363.6|UDP-glucuronate decarboxylase 1 	ENSMUST00000126008.1|Uxs1|ENSMUSG00000057363.6|UDP-glucuronate decarboxylase 1 	ENSMUST00000139451.1|Uxs1|ENSMUSG00000057363.6|UDP-glucuronate decarboxylase 1
mm10_v2_chrX_+_134601179_134601266	0.0287693	UCCAGUU	ENSMUST00000074950.4|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000113203.1|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000113202.1|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2
mm10_v2_chr10_-_13324160_13324242	0.0285866	UCCAGUU	ENSMUST00000105545.4|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr10_+_52233612_52233672	0.0285108	UCCAGUU	ENSMUST00000069004.5|Dcbld1|ENSMUSG00000019891.7|discoidin, CUB  and LCCL domain containing 1 	ENSMUST00000105476.2|Dcbld1|ENSMUSG00000019891.7|discoidin, CUB  and LCCL domain containing 1
mm10_v2_chr9_-_45984816_45984871	0.0278369	UCCAGUU	ENSMUST00000172450.1|Pafah1b2|ENSMUSG00000003131.6|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
mm10_v2_chr13_-_85288999_85289058	0.0277604	UCCAGUU	ENSMUST00000109552.2|Rasa1|ENSMUSG00000021549.7|RAS p21 protein activator 1
mm10_v2_chr1_-_165634451_165634576	0.0277593	UCCAGUU	ENSMUST00000111435.2|Mpzl1|ENSMUSG00000026566.9|myelin protein zero-like 1 	ENSMUST00000068705.7|Mpzl1|ENSMUSG00000026566.9|myelin protein zero-like 1
mm10_v2_chr6_+_72347301_72347379	0.026953	UCCAGUU	ENSMUST00000077783.3|0610030E20Rik|ENSMUSG00000058706.3|RIKEN cDNA 0610030E20 gene
mm10_v2_chr10_-_122047293_122047322	0.0268534	UCCAGUU	ENSMUST00000020322.5|Srgap1|ENSMUSG00000020121.9|SLIT-ROBO Rho GTPase activating protein 1 	ENSMUST00000081688.6|Srgap1|ENSMUSG00000020121.9|SLIT-ROBO Rho GTPase activating protein 1
mm10_v2_chr6_+_8209216_8209263	0.0267344	UCCAGUU	ENSMUST00000040017.7|Mios|ENSMUSG00000042447.7|missing oocyte, meiosis regulator, homolog (Drosophila)
mm10_v2_chrX_-_57393020_57393040	0.0265103	UCCAGUU	ENSMUST00000143310.1|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome 	ENSMUST00000098470.2|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome 	ENSMUST00000114726.1|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome
mm10_v2_chr6_-_146502099_146502133	0.0262637	UCCAGUU	ENSMUST00000053273.8|Itpr2|ENSMUSG00000030287.9|inositol 1,4,5-triphosphate receptor 2
mm10_v2_chr16_+_17233560_17233664	0.0260051	UCCAGUU	ENSMUST00000090190.5|Hic2|ENSMUSG00000050240.8|hypermethylated in cancer 2 	ENSMUST00000115698.2|Hic2|ENSMUSG00000050240.8|hypermethylated in cancer 2
mm10_v2_chr2_-_65567465_65567495	0.0259603	UCCAGUU	ENSMUST00000066432.5|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr5_-_125341043_125341112	0.0255345	UCCAGUU	ENSMUST00000111390.1|Scarb1|ENSMUSG00000037936.9|scavenger receptor class B, member 1 	ENSMUST00000086075.6|Scarb1|ENSMUSG00000037936.9|scavenger receptor class B, member 1
mm10_v2_chr10_+_75060885_75060901	0.0251853	UCCAGUU	ENSMUST00000164107.1|Bcr|ENSMUSG00000009681.9|breakpoint cluster region
mm10_v2_chr11_+_106084577_106084623	0.0242722	UCCAGUU	ENSMUST00000002044.9|Map3k3|ENSMUSG00000020700.11|mitogen-activated protein kinase kinase kinase 3
mm10_v2_chr13_+_111686178_111686210	0.0238328	UCCAGUU	ENSMUST00000109272.2|Mier3|ENSMUSG00000032727.7|mesoderm induction early response 1, family member 3
mm10_v2_chr2_+_102658640_102658669	0.0238062	UCCAGUU	ENSMUST00000080210.3|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr11_-_94499962_94500002	0.023756	UCCAGUU	ENSMUST00000127305.1|Epn3|ENSMUSG00000010080.9|epsin 3
mm10_v2_chr15_+_102073773_102073903	0.0236592	UCCAGUU	ENSMUST00000169681.1|Eif4b|ENSMUSG00000058655.8|eukaryotic translation initiation factor 4B
mm10_v2_chr3_+_51415986_51416044	0.0233712	UCCAGUU	ENSMUST00000029303.7|Naa15|ENSMUSG00000063273.6|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm10_v2_chr11_-_102319093_102319105	0.0231514	UCCAGUU	ENSMUST00000174302.1|Ubtf|ENSMUSG00000020923.11|upstream binding transcription factor, RNA polymerase I 	ENSMUST00000178839.1|Ubtf|ENSMUSG00000020923.11|upstream binding transcription factor, RNA polymerase I 	ENSMUST00000006754.7|Ubtf|ENSMUSG00000020923.11|upstream binding transcription factor, RNA polymerase I
mm10_v2_chr11_-_70220969_70221027	0.0231039	UCCAGUU	ENSMUST00000060010.2|Slc16a13|ENSMUSG00000044367.6|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm10_v2_chr10_+_22645011_22645109	0.0215128	UCCAGUU	ENSMUST00000042261.4|Slc2a12|ENSMUSG00000037490.5|solute carrier family 2 (facilitated glucose transporter), member 12
mm10_v2_chr12_+_78226627_78226655	0.0215004	UCCAGUU	ENSMUST00000110388.2|Gphn|ENSMUSG00000047454.5|gephyrin 	ENSMUST00000052472.4|Gphn|ENSMUSG00000047454.5|gephyrin
mm10_v2_chr17_-_70990751_70990819	0.0207876	UCCAGUU	ENSMUST00000038446.8|Myl12b|ENSMUSG00000034868.8|myosin, light chain 12B, regulatory
mm10_v2_chr13_+_45507438_45507515	0.0191679	UCCAGUU	ENSMUST00000000260.6|Gmpr|ENSMUSG00000000253.6|guanosine monophosphate reductase
mm10_v2_chr3_+_34020075_34020082	0.0188774	UCCAGUU	ENSMUST00000001620.8|Fxr1|ENSMUSG00000027680.9|fragile X mental retardation gene 1, autosomal homolog 	ENSMUST00000167354.1|Fxr1|ENSMUSG00000027680.9|fragile X mental retardation gene 1, autosomal homolog
mm10_v2_chr17_+_50509518_50509553	0.0186827	UCCAGUU	ENSMUST00000043938.6|Plcl2|ENSMUSG00000038910.6|phospholipase C-like 2
mm10_v2_chr1_-_16619437_16619489	0.0185114	UCCAGUU	ENSMUST00000117146.1|Ube2w|ENSMUSG00000025939.11|ubiquitin-conjugating enzyme E2W (putative)
mm10_v2_chr6_+_4903298_4903346	0.0183814	UCCAGUU	ENSMUST00000035813.2|Ppp1r9a|ENSMUSG00000032827.9|protein phosphatase 1, regulatory (inhibitor) subunit 9A
mm10_v2_chr1_-_58504946_58505109	0.0179525	UCCAGUU	ENSMUST00000027198.5|Orc2|ENSMUSG00000026037.8|origin recognition complex, subunit 2
mm10_v2_chr5_-_96161990_96162097	0.0172524	UCCAGUU	ENSMUST00000155901.1|Cnot6l|ENSMUSG00000034724.11|CCR4-NOT transcription complex, subunit 6-like
mm10_v2_chr2_-_104816696_104816792	0.0170015	UCCAGUU	ENSMUST00000117237.1|Qser1|ENSMUSG00000074994.4|glutamine and serine rich 1
mm10_v2_chr5_-_147725988_147726023	0.0169315	UCCAGUU	ENSMUST00000110529.1|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1 	ENSMUST00000031652.3|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1 	ENSMUST00000031653.5|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1
mm10_v2_chr12_-_12941827_12941914	0.0166579	UCCAGUU	ENSMUST00000043396.7|Mycn|ENSMUSG00000037169.8|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)
mm10_v2_chr19_-_17837620_17837642	0.0164716	UCCAGUU	ENSMUST00000025618.8|Pcsk5|ENSMUSG00000024713.9|proprotein convertase subtilisin/kexin type 5 	ENSMUST00000050715.8|Pcsk5|ENSMUSG00000024713.9|proprotein convertase subtilisin/kexin type 5
mm10_v2_chr3_-_9610074_9610086	0.0164535	UCCAGUU	ENSMUST00000041124.7|Zfp704|ENSMUSG00000040209.7|zinc finger protein 704
mm10_v2_chr7_+_67952817_67952859	0.0162842	UCCAGUU	ENSMUST00000005671.8|Igf1r|ENSMUSG00000005533.9|insulin-like growth factor I receptor
mm10_v2_chr13_+_47122719_47122761	0.0157879	UCCAGUU	ENSMUST00000068891.4|Rnf144b|ENSMUSG00000038068.8|ring finger protein 144B
mm10_v2_chr2_+_145785980_145786152	0.0146071	UCCAGUU	ENSMUST00000110005.1|Rin2|ENSMUSG00000001768.9|Ras and Rab interactor 2 	ENSMUST00000094480.4|Rin2|ENSMUSG00000001768.9|Ras and Rab interactor 2
mm10_v2_chr10_-_84440591_84440604	0.0140726	UCCAGUU	ENSMUST00000020220.8|Nuak1|ENSMUSG00000020032.8|NUAK family, SNF1-like kinase, 1
mm10_v2_chr11_+_95414078_95414243	0.0140628	UCCAGUU	ENSMUST00000107724.2|Spop|ENSMUSG00000057522.9|speckle-type POZ protein 	ENSMUST00000150884.1|Spop|ENSMUSG00000057522.9|speckle-type POZ protein 	ENSMUST00000107722.1|Spop|ENSMUSG00000057522.9|speckle-type POZ protein 	ENSMUST00000127713.1|Spop|ENSMUSG00000057522.9|speckle-type POZ protein
mm10_v2_chr11_-_120598346_120598405	0.0139562	UCCAGUU	ENSMUST00000026125.2|Alyref|ENSMUSG00000025134.2|Aly/REF export factor
mm10_v2_chr1_+_180726019_180726106	0.0139243	UCCAGUU	ENSMUST00000027780.4|Acbd3|ENSMUSG00000026499.4|acyl-Coenzyme A binding domain containing 3
mm10_v2_chr9_+_6168638_6168671	0.0138566	UCCAGUU	ENSMUST00000058692.7|Pdgfd|ENSMUSG00000032006.8|platelet-derived growth factor, D polypeptide
mm10_v2_chr5_+_121397936_121398004	0.0138366	UCCAGUU	ENSMUST00000042163.8|Naa25|ENSMUSG00000042719.11|N(alpha)-acetyltransferase 25, NatB auxiliary subunit
mm10_v2_chr2_-_6884975_6884996	0.0136095	UCCAGUU	ENSMUST00000114924.3|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000170438.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000114934.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr1_+_194619815_194619833	0.0131842	UCCAGUU	ENSMUST00000027952.5|Plxna2|ENSMUSG00000026640.6|plexin A2
mm10_v2_chr9_+_75071148_75071228	0.0126607	UCCAGUU	ENSMUST00000123128.1|Myo5a|ENSMUSG00000034593.10|myosin VA
mm10_v2_chr11_+_53567361_53567526	0.0123667	UCCAGUU	ENSMUST00000057330.8|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000120613.2|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000173744.1|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000118353.2|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A
mm10_v2_chr3_-_51277470_51277514	0.0122136	UCCAGUU	ENSMUST00000108053.2|Elf2|ENSMUSG00000037174.12|E74-like factor 2 	ENSMUST00000108051.1|Elf2|ENSMUSG00000037174.12|E74-like factor 2
mm10_v2_chr12_-_8499985_8500017	0.0112012	UCCAGUU	ENSMUST00000067384.4|Rhob|ENSMUSG00000054364.4|ras homolog gene family, member B
mm10_v2_chr11_-_5261558_5261637	0.0110091	UCCAGUU	ENSMUST00000020662.8|Kremen1|ENSMUSG00000020393.10|kringle containing transmembrane protein 1
mm10_v2_chr5_+_13399309_13399382	0.0106561	UCCAGUU	ENSMUST00000030714.7|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 	ENSMUST00000141968.1|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm10_v2_chr2_+_180582712_180582742	0.0106045	UCCAGUU	ENSMUST00000029085.8|Mrgbp|ENSMUSG00000027569.9|MRG/MORF4L binding protein
mm10_v2_chr8_+_105170668_105170686	0.010567	UCCAGUU	ENSMUST00000109395.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000109394.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000052209.2|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000109392.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta
mm10_v2_chr7_-_89338709_89338795	0.0102973	UCCAGUU	ENSMUST00000137723.1|Tmem135|ENSMUSG00000039428.4|transmembrane protein 135 	ENSMUST00000117852.1|Tmem135|ENSMUSG00000039428.4|transmembrane protein 135 	ENSMUST00000041968.3|Tmem135|ENSMUSG00000039428.4|transmembrane protein 135
mm10_v2_chr14_+_105258573_105258629	0.0102865	UCCAGUU	ENSMUST00000181969.1|Ndfip2|ENSMUSG00000053253.10|Nedd4 family interacting protein 2
mm10_v2_chr9_-_67559703_67559703	0.0100618	UCCAGUU	ENSMUST00000040025.7|Tln2|ENSMUSG00000052698.8|talin 2
mm10_v2_chr9_-_108263887_108263965	0.0100072	UCCAGUU	ENSMUST00000166905.1|Dag1|ENSMUSG00000039952.9|dystroglycan 1 	ENSMUST00000080435.2|Dag1|ENSMUSG00000039952.9|dystroglycan 1
mm10_v2_chr16_-_58523349_58523426	0.00992257	UCCAGUU	ENSMUST00000137035.1|St3gal6|ENSMUSG00000022747.10|ST3 beta-galactoside alpha-2,3-sialyltransferase 6
mm10_v2_chr5_+_121660528_121660631	0.0098899	UCCAGUU	ENSMUST00000031414.8|Brap|ENSMUSG00000029458.8|BRCA1 associated protein
mm10_v2_chr18_-_10181792_10181792	0.00978026	UCCAGUU	ENSMUST00000067947.5|Rock1|ENSMUSG00000024290.8|Rho-associated coiled-coil containing protein kinase 1
mm10_v2_chr1_+_63273261_63273275	0.00902623	UCCAGUU	ENSMUST00000114132.1|Zdbf2|ENSMUSG00000027520.9|zinc finger, DBF-type containing 2 	ENSMUST00000126932.1|Zdbf2|ENSMUSG00000027520.9|zinc finger, DBF-type containing 2
mm10_v2_chr18_-_46728342_46728363	0.00860619	UCCAGUU	ENSMUST00000035804.7|Cdo1|ENSMUSG00000033022.7|cysteine dioxygenase 1, cytosolic
mm10_v2_chr2_-_103797617_103797662	0.00853275	UCCAGUU	ENSMUST00000028607.6|Caprin1|ENSMUSG00000027184.8|cell cycle associated protein 1
mm10_v2_chr4_-_123750236_123750345	0.00837502	UCCAGUU	ENSMUST00000102636.3|Akirin1|ENSMUSG00000023075.9|akirin 1
mm10_v2_chr9_-_110462436_110462480	0.00834336	UCCAGUU	ENSMUST00000111933.1|Klhl18|ENSMUSG00000054792.9|kelch-like 18
mm10_v2_chr8_+_109778554_109778558	0.0073695	UCCAGUU	ENSMUST00000093157.6|Ap1g1|ENSMUSG00000031731.10|adaptor protein complex AP-1, gamma 1 subunit
mm10_v2_chr2_+_30061754_30061859	0.00707116	UCCAGUU	ENSMUST00000149578.1|Set|ENSMUSG00000054766.7|SET nuclear oncogene 	ENSMUST00000102866.3|Set|ENSMUSG00000054766.7|SET nuclear oncogene
mm10_v2_chr13_-_111808938_111809018	0.00661977	UCCAGUU	ENSMUST00000109267.2|Map3k1|ENSMUSG00000021754.11|mitogen-activated protein kinase kinase kinase 1
mm10_v2_chr1_+_131910458_131910539	0.00661542	UCCAGUU	ENSMUST00000062264.6|Nucks1|ENSMUSG00000026434.6|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm10_v2_chr1_+_91801453_91801487	0.00654813	UCCAGUU	ENSMUST00000007949.3|Twist2|ENSMUSG00000007805.3|twist basic helix-loop-helix transcription factor 2
mm10_v2_chr19_-_44146433_44146447	0.00651222	UCCAGUU	ENSMUST00000079033.4|Bloc1s2|ENSMUSG00000057506.4|biogenesis of lysosome-related organelles complex-1, subunit 2
mm10_v2_chr17_-_10319324_10319380	0.00646804	UCCAGUU	ENSMUST00000097414.3|Qk|ENSMUSG00000062078.8|quaking 	ENSMUST00000042296.7|Qk|ENSMUSG00000062078.8|quaking
mm10_v2_chr4_+_106911470_106911511	0.00622265	UCCAGUU	ENSMUST00000030367.8|Ssbp3|ENSMUSG00000061887.8|single-stranded DNA binding protein 3 	ENSMUST00000149926.1|Ssbp3|ENSMUSG00000061887.8|single-stranded DNA binding protein 3
mm10_v2_chr1_-_60566708_60566769	0.00621258	UCCAGUU	ENSMUST00000027168.5|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000090293.4|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000140485.1|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
mm10_v2_chr7_+_120677579_120677630	0.00609605	UCCAGUU	ENSMUST00000060175.6|BC030336|ENSMUSG00000046096.6|cDNA sequence BC030336
mm10_v2_chr11_+_116434087_116434106	0.00608544	UCCAGUU	ENSMUST00000057676.6|Ubald2|ENSMUSG00000050628.6|UBA-like domain containing 2
mm10_v2_chr2_+_104590453_104590533	0.00599765	UCCAGUU	ENSMUST00000028599.7|Cstf3|ENSMUSG00000027176.8|cleavage stimulation factor, 3' pre-RNA, subunit 3
mm10_v2_chr11_+_77686155_77686179	0.00582582	UCCAGUU	ENSMUST00000100802.4|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2 	ENSMUST00000181023.1|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2
mm10_v2_chr2_-_57114970_57115038	0.00570701	UCCAGUU	ENSMUST00000028166.2|Nr4a2|ENSMUSG00000026826.7|nuclear receptor subfamily 4, group A, member 2
mm10_v2_chr7_+_141228766_141228813	0.00531743	UCCAGUU	ENSMUST00000106027.2|Phrf1|ENSMUSG00000038611.10|PHD and ring finger domains 1
mm10_v2_chr19_+_55253369_55253369	0.00523568	UCCAGUU	ENSMUST00000043150.4|Acsl5|ENSMUSG00000024981.5|acyl-CoA synthetase long-chain family member 5
mm10_v2_chr1_+_152766540_152766551	0.0051738	UCCAGUU	ENSMUST00000077755.5|Arpc5|ENSMUSG00000008475.7|actin related protein 2/3 complex, subunit 5 	ENSMUST00000097536.4|Arpc5|ENSMUSG00000008475.7|actin related protein 2/3 complex, subunit 5
mm10_v2_chr6_+_30401866_30401965	0.00514099	UCCAGUU	ENSMUST00000068240.6|Klhdc10|ENSMUSG00000029775.8|kelch domain containing 10 	ENSMUST00000068259.6|Klhdc10|ENSMUSG00000029775.8|kelch domain containing 10
mm10_v2_chr4_-_132212255_132212303	0.00513675	UCCAGUU	ENSMUST00000152796.1|Ythdf2|ENSMUSG00000040025.11|YTH domain family 2
mm10_v2_chr2_+_5845017_5845062	0.00509412	UCCAGUU	ENSMUST00000026927.3|Nudt5|ENSMUSG00000025817.6|nudix (nucleoside diphosphate linked moiety X)-type motif 5 	ENSMUST00000179748.1|Nudt5|ENSMUSG00000025817.6|nudix (nucleoside diphosphate linked moiety X)-type motif 5
mm10_v2_chrX_-_142390334_142390345	0.00497268	UCCAGUU	ENSMUST00000112907.1|Acsl4|ENSMUSG00000031278.6|acyl-CoA synthetase long-chain family member 4
mm10_v2_chr18_-_47368830_47368878	0.00489206	UCCAGUU	ENSMUST00000019791.7|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 	ENSMUST00000115449.2|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm10_v2_chr15_-_54278420_54278484	0.00483511	UCCAGUU	ENSMUST00000079772.3|Tnfrsf11b|ENSMUSG00000063727.3|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)
mm10_v2_chr1_+_44119952_44119985	0.00431378	UCCAGUU	ENSMUST00000114709.2|Bivm|ENSMUSG00000041684.5|basic, immunoglobulin-like variable motif containing
mm10_v2_chr16_-_46496955_46496986	0.00397169	UCCAGUU	ENSMUST00000023335.6|Pvrl3|ENSMUSG00000022656.9|poliovirus receptor-related 3 	ENSMUST00000023334.8|Pvrl3|ENSMUSG00000022656.9|poliovirus receptor-related 3
mm10_v2_chr9_+_44604844_44604921	0.0039321	UCCAGUU	ENSMUST00000170489.1|Ddx6|ENSMUSG00000032097.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm10_v2_chr14_-_66868572_66868688	0.00391636	UCCAGUU	ENSMUST00000022629.8|Dpysl2|ENSMUSG00000022048.8|dihydropyrimidinase-like 2
mm10_v2_chr4_+_155491353_155491411	0.00373929	UCCAGUU	ENSMUST00000165335.1|Gnb1|ENSMUSG00000029064.9|guanine nucleotide binding protein (G protein), beta 1 	ENSMUST00000105616.3|Gnb1|ENSMUSG00000029064.9|guanine nucleotide binding protein (G protein), beta 1 	ENSMUST00000030940.7|Gnb1|ENSMUSG00000029064.9|guanine nucleotide binding protein (G protein), beta 1
mm10_v2_chr4_+_139192899_139192941	0.00373799	UCCAGUU	ENSMUST00000102508.3|Capzb|ENSMUSG00000028745.12|capping protein (actin filament) muscle Z-line, beta 	ENSMUST00000131912.1|Capzb|ENSMUSG00000028745.12|capping protein (actin filament) muscle Z-line, beta 	ENSMUST00000102507.3|Capzb|ENSMUSG00000028745.12|capping protein (actin filament) muscle Z-line, beta
mm10_v2_chr2_+_31759932_31759989	0.00355146	UCCAGUU	ENSMUST00000028190.6|Abl1|ENSMUSG00000026842.10|c-abl oncogene 1, non-receptor tyrosine kinase
mm10_v2_chr4_-_103215147_103215201	0.00326483	UCCAGUU	ENSMUST00000150285.1|Slc35d1|ENSMUSG00000028521.11|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
mm10_v2_chr16_+_23107754_23107761	0.00313688	UCCAGUU	ENSMUST00000077605.5|Eif4a2|ENSMUSG00000022884.8|eukaryotic translation initiation factor 4A2 	ENSMUST00000115341.3|Eif4a2|ENSMUSG00000022884.8|eukaryotic translation initiation factor 4A2
mm10_v2_chr3_-_94582716_94582741	0.00277134	UCCAGUU	ENSMUST00000029783.9|Snx27|ENSMUSG00000028136.9|sorting nexin family member 27
mm10_v2_chr11_-_76509419_76509435	0.00263798	UCCAGUU	ENSMUST00000094012.4|Abr|ENSMUSG00000017631.12|active BCR-related gene
mm10_v2_chr7_-_79920599_79920658	0.00238806	UCCAGUU	ENSMUST00000075657.6|Ap3s2|ENSMUSG00000063801.6|adaptor-related protein complex 3, sigma 2 subunit
mm10_v2_chr14_+_65837302_65837397	0.00235112	UCCAGUU	ENSMUST00000022614.5|Ccdc25|ENSMUSG00000022035.5|coiled-coil domain containing 25
mm10_v2_chr13_+_54071815_54071859	0.00213503	UCCAGUU	ENSMUST00000021930.8|Sfxn1|ENSMUSG00000021474.8|sideroflexin 1
mm10_v2_chr11_+_93886157_93886219	0.00212351	UCCAGUU	ENSMUST00000063718.4|Mbtd1|ENSMUSG00000059474.7|mbt domain containing 1 	ENSMUST00000107854.2|Mbtd1|ENSMUSG00000059474.7|mbt domain containing 1
mm10_v2_chr15_-_81400043_81400093	0.00184015	UCCAGUU	ENSMUST00000172107.1|St13|ENSMUSG00000022403.8|suppression of tumorigenicity 13 	ENSMUST00000169204.1|St13|ENSMUSG00000022403.8|suppression of tumorigenicity 13 	ENSMUST00000163382.1|St13|ENSMUSG00000022403.8|suppression of tumorigenicity 13
mm10_v2_chr7_-_110614761_110614928	0.00165452	UCCAGUU	ENSMUST00000166020.1|Sbf2|ENSMUSG00000038371.8|SET binding factor 2 	ENSMUST00000171218.1|Sbf2|ENSMUSG00000038371.8|SET binding factor 2 	ENSMUST00000033058.7|Sbf2|ENSMUSG00000038371.8|SET binding factor 2 	ENSMUST00000164759.1|Sbf2|ENSMUSG00000038371.8|SET binding factor 2
mm10_v2_chr19_+_8898090_8898122	0.00144165	UCCAGUU	ENSMUST00000096246.3|Ganab|ENSMUSG00000071650.5|alpha glucosidase 2 alpha neutral subunit
mm10_v2_chr13_+_92611119_92611139	0.00129046	UCCAGUU	ENSMUST00000049488.7|Serinc5|ENSMUSG00000021703.8|serine incorporator 5
mm10_v2_chr5_-_131616599_131616611	0.0009826	UCCAGUU	ENSMUST00000161804.1|Auts2|ENSMUSG00000029673.11|autism susceptibility candidate 2
mm10_v2_chr11_-_75348261_75348324	0.000936372	UCCAGUU	ENSMUST00000000767.5|Rpa1|ENSMUSG00000000751.7|replication protein A1 	ENSMUST00000092907.5|Rpa1|ENSMUSG00000000751.7|replication protein A1
mm10_v2_chr14_-_63543931_63543991	0.000821369	UCCAGUU	ENSMUST00000058679.5|Mtmr9|ENSMUSG00000035078.5|myotubularin related protein 9
mm10_v2_chr5_-_123684289_123684379	0.000614088	UCCAGUU	ENSMUST00000111564.1|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1 	ENSMUST00000063905.5|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1
mm10_v2_chr11_-_102697710_102697782	0.000596352	UCCAGUU	ENSMUST00000164506.2|Ccdc43|ENSMUSG00000020925.10|coiled-coil domain containing 43 	ENSMUST00000092569.6|Ccdc43|ENSMUSG00000020925.10|coiled-coil domain containing 43
mm10_v2_chr19_-_7241216_7241226	0.000558671	UCCAGUU	ENSMUST00000025675.9|Naa40|ENSMUSG00000024764.9|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
mm10_v2_chr6_-_39206782_39206831	0.000483664	UCCAGUU	ENSMUST00000002305.8|Jhdm1d|ENSMUSG00000042599.8|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm10_v2_chr12_+_69372112_69372172	0.000422687	UCCAGUU	ENSMUST00000050063.7|Arf6|ENSMUSG00000044147.7|ADP-ribosylation factor 6
mm10_v2_chrX_-_48208566_48208691	0.000128664	UCCAGUU	ENSMUST00000037960.4|Zdhhc9|ENSMUSG00000036985.6|zinc finger, DHHC domain containing 9
mm10_v2_chr5_-_115134907_115134975	0.000114676	UCCAGUU	ENSMUST00000060798.5|Unc119b|ENSMUSG00000046562.5|unc-119 homolog B (C. elegans)
