mm10_v2_chr2_+_21367532_21367542	1.30511	UGCAUAG	ENSMUST00000055946.7|Gpr158|ENSMUSG00000045967.11|G protein-coupled receptor 158
mm10_v2_chr5_-_131616599_131616611	1.12941	UGCAUAG	ENSMUST00000161804.1|Auts2|ENSMUSG00000029673.11|autism susceptibility candidate 2
mm10_v2_chr11_-_47379405_47379522	1.10339	UGCAUAG	ENSMUST00000077221.5|Sgcd|ENSMUSG00000020354.9|sarcoglycan, delta (dystrophin-associated glycoprotein)
mm10_v2_chr13_+_12565868_12565883	0.861476	UGCAUAG	ENSMUST00000071973.6|Ero1lb|ENSMUSG00000057069.6|ERO1-like beta (S. cerevisiae)
mm10_v2_chr8_+_60632856_60632905	0.791683	UGCAUAG	ENSMUST00000160719.1|Mfap3l|ENSMUSG00000031647.4|microfibrillar-associated protein 3-like
mm10_v2_chr3_+_141465564_141465574	0.768982	UGCAUAG	ENSMUST00000106236.2|Unc5c|ENSMUSG00000059921.9|unc-5 homolog C (C. elegans) 	ENSMUST00000075282.3|Unc5c|ENSMUSG00000059921.9|unc-5 homolog C (C. elegans)
mm10_v2_chr5_-_8997324_8997324	0.759861	UGCAUAG	ENSMUST00000003720.4|Crot|ENSMUSG00000003623.4|carnitine O-octanoyltransferase
mm10_v2_chr2_-_62412219_62412234	0.727426	UGCAUAG	ENSMUST00000047812.7|Dpp4|ENSMUSG00000035000.8|dipeptidylpeptidase 4
mm10_v2_chr15_-_75747922_75747922	0.693297	UGCAUAG	ENSMUST00000062002.4|Mafa|ENSMUSG00000047591.4|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)
mm10_v2_chr5_+_110879788_110879842	0.687028	UGCAUAG	ENSMUST00000156290.2|Ttc28|ENSMUSG00000033209.11|tetratricopeptide repeat domain 28 	ENSMUST00000040111.9|Ttc28|ENSMUSG00000033209.11|tetratricopeptide repeat domain 28
mm10_v2_chr8_+_76899772_76899828	0.673313	UGCAUAG	ENSMUST00000109913.2|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2
mm10_v2_chr3_+_107101551_107101567	0.664208	UGCAUAG	ENSMUST00000038695.1|Kcna2|ENSMUSG00000040724.1|potassium voltage-gated channel, shaker-related subfamily, member 2
mm10_v2_chr5_-_65492984_65493051	0.658784	UGCAUAG	ENSMUST00000139122.1|Smim14|ENSMUSG00000037822.6|small integral membrane protein 14
mm10_v2_chr11_+_75193783_75193864	0.615581	UGCAUAG	ENSMUST00000102514.3|Rtn4rl1|ENSMUSG00000045287.6|reticulon 4 receptor-like 1
mm10_v2_chr17_-_87797994_87798049	0.609857	UGCAUAG	ENSMUST00000055221.7|Kcnk12|ENSMUSG00000050138.7|potassium channel, subfamily K, member 12
mm10_v2_chr6_+_97807014_97807067	0.578159	UGCAUAG	ENSMUST00000043637.7|Mitf|ENSMUSG00000035158.9|microphthalmia-associated transcription factor
mm10_v2_chr13_+_18948344_18948417	0.572981	UGCAUAG	ENSMUST00000003345.7|Amph|ENSMUSG00000021314.7|amphiphysin
mm10_v2_chr17_-_17624458_17624496	0.570852	UGCAUAG	ENSMUST00000041047.2|Lnpep|ENSMUSG00000023845.6|leucyl/cystinyl aminopeptidase
mm10_v2_chr3_-_85746266_85746266	0.563357	UGCAUAG	ENSMUST00000118408.1|Fam160a1|ENSMUSG00000051000.11|family with sequence similarity 160, member A1
mm10_v2_chr4_+_100095791_100095867	0.548154	UGCAUAG	ENSMUST00000039630.5|Ror1|ENSMUSG00000035305.5|receptor tyrosine kinase-like orphan receptor 1
mm10_v2_chr14_+_99298652_99298715	0.544536	UGCAUAG	ENSMUST00000005279.6|Klf5|ENSMUSG00000005148.7|Kruppel-like factor 5
mm10_v2_chr2_-_110950923_110950923	0.514701	UGCAUAG	ENSMUST00000099623.3|Ano3|ENSMUSG00000074968.5|anoctamin 3
mm10_v2_chr9_+_59578192_59578337	0.505944	UGCAUAG	ENSMUST00000118549.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6 	ENSMUST00000034840.3|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6
mm10_v2_chr3_-_89387132_89387189	0.50412	UGCAUAG	ENSMUST00000107433.1|Zbtb7b|ENSMUSG00000028042.9|zinc finger and BTB domain containing 7B
mm10_v2_chr15_-_71727815_71727848	0.471683	UGCAUAG	ENSMUST00000022953.8|Fam135b|ENSMUSG00000036800.7|family with sequence similarity 135, member B
mm10_v2_chr1_-_156036473_156036480	0.463615	UGCAUAG	ENSMUST00000097527.3|Tor1aip1|ENSMUSG00000026466.10|torsin A interacting protein 1 	ENSMUST00000027738.7|Tor1aip1|ENSMUSG00000026466.10|torsin A interacting protein 1
mm10_v2_chr1_-_3671498_3671498	0.444147	UGCAUAG	ENSMUST00000070533.4|Xkr4|ENSMUSG00000051951.5|X Kell blood group precursor related family member 4
mm10_v2_chr2_+_155381808_155381884	0.428934	UGCAUAG	ENSMUST00000043237.7|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2 	ENSMUST00000174685.1|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2
mm10_v2_chr6_+_54816906_54816920	0.413131	UGCAUAG	ENSMUST00000079869.6|Znrf2|ENSMUSG00000058446.8|zinc and ring finger 2
mm10_v2_chr4_+_54947976_54948054	0.413124	UGCAUAG	ENSMUST00000098070.3|Zfp462|ENSMUSG00000060206.5|zinc finger protein 462
mm10_v2_chr12_+_64917901_64917944	0.412738	UGCAUAG	ENSMUST00000058135.4|Gm527|ENSMUSG00000047227.4|predicted gene 527
mm10_v2_chr5_+_88886809_88886825	0.410757	UGCAUAG	ENSMUST00000148750.1|Slc4a4|ENSMUSG00000060961.8|solute carrier family 4 (anion exchanger), member 4
mm10_v2_chr3_-_117360876_117360876	0.405192	UGCAUAG	ENSMUST00000061071.8|D3Bwg0562e|ENSMUSG00000044667.8|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm10_v2_chr2_+_157424255_157424322	0.404579	UGCAUAG	ENSMUST00000029175.7|Src|ENSMUSG00000027646.9|Rous sarcoma oncogene 	ENSMUST00000092576.4|Src|ENSMUSG00000027646.9|Rous sarcoma oncogene
mm10_v2_chr12_+_52516077_52516077	0.390481	UGCAUAG	ENSMUST00000110725.1|Arhgap5|ENSMUSG00000035133.8|Rho GTPase activating protein 5
mm10_v2_chr18_+_67933257_67933257	0.379123	UGCAUAG	ENSMUST00000063775.3|Ldlrad4|ENSMUSG00000024544.8|low density lipoprotein receptor class A domain containing 4
mm10_v2_chr14_-_65262391_65262490	0.377266	UGCAUAG	ENSMUST00000131309.1|Fzd3|ENSMUSG00000007989.6|frizzled homolog 3 (Drosophila)
mm10_v2_chr3_+_28263205_28263215	0.375611	UGCAUAG	ENSMUST00000159236.2|Tnik|ENSMUSG00000027692.10|TRAF2 and NCK interacting kinase
mm10_v2_chr1_+_9798123_9798216	0.374805	UGCAUAG	ENSMUST00000168907.1|Sgk3|ENSMUSG00000025915.8|serum/glucocorticoid regulated kinase 3 	ENSMUST00000166384.1|Sgk3|ENSMUSG00000025915.8|serum/glucocorticoid regulated kinase 3
mm10_v2_chr13_+_13590402_13590456	0.373593	UGCAUAG	ENSMUST00000110559.1|Lyst|ENSMUSG00000019726.10|lysosomal trafficking regulator
mm10_v2_chr5_-_122779278_122779434	0.372804	UGCAUAG	ENSMUST00000111668.3|Camkk2|ENSMUSG00000029471.9|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm10_v2_chr2_-_153529941_153529985	0.368043	UGCAUAG	ENSMUST00000035346.7|8430427H17Rik|ENSMUSG00000061411.6|RIKEN cDNA 8430427H17 gene
mm10_v2_chr12_+_71831064_71831178	0.357579	UGCAUAG	ENSMUST00000085299.2|Daam1|ENSMUSG00000034574.9|dishevelled associated activator of morphogenesis 1
mm10_v2_chr8_+_13159135_13159168	0.355003	UGCAUAG	ENSMUST00000033824.6|Lamp1|ENSMUSG00000031447.6|lysosomal-associated membrane protein 1
mm10_v2_chr13_+_72628802_72628825	0.350685	UGCAUAG	ENSMUST00000074372.4|Irx2|ENSMUSG00000001504.9|Iroquois related homeobox 2 (Drosophila)
mm10_v2_chr3_-_131344892_131344940	0.349424	UGCAUAG	ENSMUST00000090246.4|Sgms2|ENSMUSG00000050931.6|sphingomyelin synthase 2 	ENSMUST00000126569.1|Sgms2|ENSMUSG00000050931.6|sphingomyelin synthase 2
mm10_v2_chrX_+_164419855_164419909	0.348112	UGCAUAG	ENSMUST00000112255.1|Piga|ENSMUSG00000031381.9|phosphatidylinositol glycan anchor biosynthesis, class A
mm10_v2_chr3_+_96104498_96104571	0.344316	UGCAUAG	ENSMUST00000132980.1|Otud7b|ENSMUSG00000038495.8|OTU domain containing 7B 	ENSMUST00000138206.1|Otud7b|ENSMUSG00000038495.8|OTU domain containing 7B 	ENSMUST00000090785.2|Otud7b|ENSMUSG00000038495.8|OTU domain containing 7B 	ENSMUST00000035519.5|Otud7b|ENSMUSG00000038495.8|OTU domain containing 7B
mm10_v2_chr5_+_64803513_64803530	0.343233	UGCAUAG	ENSMUST00000165536.1|Klf3|ENSMUSG00000029178.8|Kruppel-like factor 3 (basic)
mm10_v2_chr6_-_126645784_126645801	0.342542	UGCAUAG	ENSMUST00000055168.3|Kcna1|ENSMUSG00000047976.3|potassium voltage-gated channel, shaker-related subfamily, member 1
mm10_v2_chr7_+_113513829_113513846	0.342281	UGCAUAG	ENSMUST00000033018.8|Far1|ENSMUSG00000030759.10|fatty acyl CoA reductase 1
mm10_v2_chr5_-_122049822_122049882	0.339203	UGCAUAG	ENSMUST00000111752.3|Cux2|ENSMUSG00000042589.12|cut-like homeobox 2
mm10_v2_chr18_+_51117754_51117898	0.33459	UGCAUAG	ENSMUST00000116639.2|Prr16|ENSMUSG00000073565.4|proline rich 16
mm10_v2_chr5_+_30588078_30588171	0.334472	UGCAUAG	ENSMUST00000066295.2|Kcnk3|ENSMUSG00000049265.6|potassium channel, subfamily K, member 3
mm10_v2_chr7_-_47008397_47008421	0.329149	UGCAUAG	ENSMUST00000061639.7|Spty2d1|ENSMUSG00000049516.7|SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)
mm10_v2_chr1_+_23761926_23761999	0.327064	UGCAUAG	ENSMUST00000063663.5|B3gat2|ENSMUSG00000026156.8|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
mm10_v2_chr12_-_75177325_75177359	0.325818	UGCAUAG	ENSMUST00000042299.2|Kcnh5|ENSMUSG00000034402.2|potassium voltage-gated channel, subfamily H (eag-related), member 5
mm10_v2_chr17_+_25188380_25188418	0.321935	UGCAUAG	ENSMUST00000039734.5|Unkl|ENSMUSG00000015127.8|unkempt-like (Drosophila)
mm10_v2_chr6_+_95117740_95117880	0.319201	UGCAUAG	ENSMUST00000032107.7|Kbtbd8|ENSMUSG00000030031.8|kelch repeat and BTB (POZ) domain containing 8 	ENSMUST00000119582.1|Kbtbd8|ENSMUSG00000030031.8|kelch repeat and BTB (POZ) domain containing 8
mm10_v2_chr2_+_32535315_32535359	0.318293	UGCAUAG	ENSMUST00000133512.1|Fam102a|ENSMUSG00000039157.6|family with sequence similarity 102, member A 	ENSMUST00000048375.5|Fam102a|ENSMUSG00000039157.6|family with sequence similarity 102, member A
mm10_v2_chr1_+_164062070_164062098	0.312558	UGCAUAG	ENSMUST00000097491.3|Sell|ENSMUSG00000026581.8|selectin, lymphocyte 	ENSMUST00000027871.7|Sell|ENSMUSG00000026581.8|selectin, lymphocyte
mm10_v2_chr10_-_125328957_125328968	0.31177	UGCAUAG	ENSMUST00000063318.2|Slc16a7|ENSMUSG00000020102.8|solute carrier family 16 (monocarboxylic acid transporters), member 7
mm10_v2_chr4_-_151996113_151996258	0.305523	UGCAUAG	ENSMUST00000055688.9|Phf13|ENSMUSG00000047777.9|PHD finger protein 13
mm10_v2_chr4_-_129227883_129227923	0.305476	UGCAUAG	ENSMUST00000106051.1|C77080|ENSMUSG00000050390.6|expressed sequence C77080
mm10_v2_chr7_+_67952817_67952859	0.304072	UGCAUAG	ENSMUST00000005671.8|Igf1r|ENSMUSG00000005533.9|insulin-like growth factor I receptor
mm10_v2_chr13_-_101768154_101768217	0.300696	UGCAUAG	ENSMUST00000055518.6|Pik3r1|ENSMUSG00000041417.9|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm10_v2_chr8_-_47675130_47675165	0.297485	UGCAUAG	ENSMUST00000080353.2|Ing2|ENSMUSG00000063049.4|inhibitor of growth family, member 2
mm10_v2_chr2_+_172345565_172345590	0.292934	UGCAUAG	ENSMUST00000028995.4|Fam210b|ENSMUSG00000027495.4|family with sequence similarity 210, member B
mm10_v2_chr16_-_74411292_74411430	0.29149	UGCAUAG	ENSMUST00000117200.1|Robo2|ENSMUSG00000052516.11|roundabout homolog 2 (Drosophila)
mm10_v2_chr1_-_93478785_93478823	0.283544	UGCAUAG	ENSMUST00000170883.1|Hdlbp|ENSMUSG00000034088.9|high density lipoprotein (HDL) binding protein
mm10_v2_chr18_+_57354733_57354797	0.282625	UGCAUAG	ENSMUST00000025490.8|Prrc1|ENSMUSG00000024594.8|proline-rich coiled-coil 1
mm10_v2_chr18_+_61555258_61555290	0.28188	UGCAUAG	ENSMUST00000165123.1|Csnk1a1|ENSMUSG00000024576.8|casein kinase 1, alpha 1
mm10_v2_chr10_+_44268328_44268379	0.279402	UGCAUAG	ENSMUST00000039286.4|Atg5|ENSMUSG00000038160.6|autophagy related 5
mm10_v2_chr1_+_89070406_89070421	0.277238	UGCAUAG	ENSMUST00000066279.4|Sh3bp4|ENSMUSG00000036206.6|SH3-domain binding protein 4
mm10_v2_chr17_+_14943184_14943281	0.269015	UGCAUAG	ENSMUST00000052691.8|1600012H06Rik|ENSMUSG00000050088.9|RIKEN cDNA 1600012H06 gene 	ENSMUST00000164837.2|1600012H06Rik|ENSMUSG00000050088.9|RIKEN cDNA 1600012H06 gene 	ENSMUST00000174004.1|1600012H06Rik|ENSMUSG00000050088.9|RIKEN cDNA 1600012H06 gene
mm10_v2_chr1_-_16519284_16519336	0.267913	UGCAUAG	ENSMUST00000162751.1|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila) 	ENSMUST00000027052.6|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila) 	ENSMUST00000149320.2|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila)
mm10_v2_chr2_-_167062981_167063048	0.267909	UGCAUAG	ENSMUST00000048988.7|Znfx1|ENSMUSG00000039501.8|zinc finger, NFX1-type containing 1
mm10_v2_chr3_+_31902666_31902703	0.267312	UGCAUAG	ENSMUST00000119970.1|Kcnmb2|ENSMUSG00000037610.9|potassium large conductance calcium-activated channel, subfamily M, beta member 2 	ENSMUST00000178668.1|Kcnmb2|ENSMUSG00000037610.9|potassium large conductance calcium-activated channel, subfamily M, beta member 2
mm10_v2_chr7_+_91090697_91090727	0.264216	UGCAUAG	ENSMUST00000107196.2|Dlg2|ENSMUSG00000052572.9|discs, large homolog 2 (Drosophila)
mm10_v2_chr5_-_91963068_91963105	0.261653	UGCAUAG	ENSMUST00000031345.8|Rchy1|ENSMUSG00000029397.9|ring finger and CHY zinc finger domain containing 1
mm10_v2_chr8_-_57653023_57653039	0.258828	UGCAUAG	ENSMUST00000034021.5|Galnt7|ENSMUSG00000031608.7|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7
mm10_v2_chr2_+_106693185_106693278	0.253562	UGCAUAG	ENSMUST00000111063.1|Mpped2|ENSMUSG00000016386.9|metallophosphoesterase domain containing 2
mm10_v2_chr18_+_37725706_37725754	0.242542	UGCAUAG	ENSMUST00000066149.6|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr7_+_49246812_49246844	0.238583	UGCAUAG	ENSMUST00000184945.1|Nav2|ENSMUSG00000052512.9|neuron navigator 2
mm10_v2_chr18_+_44380479_44380554	0.237685	UGCAUAG	ENSMUST00000025350.8|Dcp2|ENSMUSG00000024472.8|DCP2 decapping enzyme homolog (S. cerevisiae)
mm10_v2_chr10_-_123076367_123076505	0.227634	UGCAUAG	ENSMUST00000073792.3|Mon2|ENSMUSG00000034602.7|MON2 homolog (yeast) 	ENSMUST00000170935.1|Mon2|ENSMUSG00000034602.7|MON2 homolog (yeast) 	ENSMUST00000037557.7|Mon2|ENSMUSG00000034602.7|MON2 homolog (yeast)
mm10_v2_chr3_+_52268337_52268388	0.22666	UGCAUAG	ENSMUST00000053764.5|Foxo1|ENSMUSG00000044167.5|forkhead box O1
mm10_v2_chr19_+_40894692_40894736	0.224069	UGCAUAG	ENSMUST00000050092.6|Zfp518a|ENSMUSG00000049164.6|zinc finger protein 518A
mm10_v2_chr10_+_79854618_79854640	0.222256	UGCAUAG	ENSMUST00000165704.1|Ptbp1|ENSMUSG00000006498.10|polypyrimidine tract binding protein 1
mm10_v2_chr5_+_53809613_53809629	0.220685	UGCAUAG	ENSMUST00000037337.6|Tbc1d19|ENSMUSG00000039178.6|TBC1 domain family, member 19
mm10_v2_chr11_+_31872100_31872226	0.21756	UGCAUAG	ENSMUST00000020543.6|Cpeb4|ENSMUSG00000020300.8|cytoplasmic polyadenylation element binding protein 4 	ENSMUST00000109412.2|Cpeb4|ENSMUSG00000020300.8|cytoplasmic polyadenylation element binding protein 4
mm10_v2_chr9_+_74861888_74861921	0.215984	UGCAUAG	ENSMUST00000056006.9|Onecut1|ENSMUSG00000043013.9|one cut domain, family member 1
mm10_v2_chr8_-_11008458_11008458	0.215534	UGCAUAG	ENSMUST00000040514.6|Irs2|ENSMUSG00000038894.6|insulin receptor substrate 2
mm10_v2_chr10_+_17723220_17723229	0.213927	UGCAUAG	ENSMUST00000038107.7|Cited2|ENSMUSG00000039910.9|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
mm10_v2_chr2_-_104494400_104494463	0.210798	UGCAUAG	ENSMUST00000028600.7|Hipk3|ENSMUSG00000027177.8|homeodomain interacting protein kinase 3
mm10_v2_chr8_+_9977707_9977725	0.209576	UGCAUAG	ENSMUST00000139793.1|Abhd13|ENSMUSG00000040396.6|abhydrolase domain containing 13 	ENSMUST00000048216.5|Abhd13|ENSMUSG00000040396.6|abhydrolase domain containing 13
mm10_v2_chr11_+_98863610_98863646	0.207138	UGCAUAG	ENSMUST00000142414.1|Wipf2|ENSMUSG00000038013.8|WAS/WASL interacting protein family, member 2 	ENSMUST00000037480.8|Wipf2|ENSMUSG00000038013.8|WAS/WASL interacting protein family, member 2
mm10_v2_chr1_+_127868773_127868807	0.206069	UGCAUAG	ENSMUST00000037649.5|Rab3gap1|ENSMUSG00000036104.5|RAB3 GTPase activating protein subunit 1
mm10_v2_chr11_+_117654798_117654824	0.205672	UGCAUAG	ENSMUST00000106344.1|Tnrc6c|ENSMUSG00000025571.7|trinucleotide repeat containing 6C
mm10_v2_chr9_-_42124276_42124333	0.203647	UGCAUAG	ENSMUST00000060989.8|Sorl1|ENSMUSG00000049313.8|sortilin-related receptor, LDLR class A repeats-containing
mm10_v2_chr10_-_86498836_86498858	0.202827	UGCAUAG	ENSMUST00000120638.1|Syn3|ENSMUSG00000059602.8|synapsin III
mm10_v2_chr14_+_30479565_30479685	0.202648	UGCAUAG	ENSMUST00000022535.7|Dcp1a|ENSMUSG00000021962.8|DCP1 decapping enzyme homolog A (S. cerevisiae)
mm10_v2_chr9_-_105495037_105495117	0.202097	UGCAUAG	ENSMUST00000176190.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000163879.2|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000112558.2|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000176390.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering
mm10_v2_chr3_+_41555723_41555745	0.20154	UGCAUAG	ENSMUST00000026865.8|Phf17|ENSMUSG00000025764.8|PHD finger protein 17
mm10_v2_chr5_+_77265454_77265549	0.200176	UGCAUAG	ENSMUST00000080359.5|Rest|ENSMUSG00000029249.9|RE1-silencing transcription factor
mm10_v2_chr16_-_4213404_4213404	0.195931	UGCAUAG	ENSMUST00000023165.6|Crebbp|ENSMUSG00000022521.8|CREB binding protein
mm10_v2_chrY_-_1245685_1245752	0.192493	UGCAUAG	ENSMUST00000143286.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000137048.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000069309.7|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000139365.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome
mm10_v2_chr6_+_38433913_38433965	0.189848	UGCAUAG	ENSMUST00000160583.1|Ubn2|ENSMUSG00000038538.11|ubinuclein 2
mm10_v2_chr13_-_103334429_103334500	0.188776	UGCAUAG	ENSMUST00000167058.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4 	ENSMUST00000164111.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr14_+_25459206_25459225	0.187793	UGCAUAG	ENSMUST00000162645.1|Zmiz1|ENSMUSG00000007817.8|zinc finger, MIZ-type containing 1
mm10_v2_chr10_-_95416850_95416861	0.186015	UGCAUAG	ENSMUST00000020215.9|Socs2|ENSMUSG00000020027.12|suppressor of cytokine signaling 2
mm10_v2_chr11_-_30268169_30268191	0.184142	UGCAUAG	ENSMUST00000006629.7|Sptbn1|ENSMUSG00000020315.12|spectrin beta, non-erythrocytic 1
mm10_v2_chr2_+_136713444_136713492	0.183608	UGCAUAG	ENSMUST00000028727.4|Snap25|ENSMUSG00000027273.7|synaptosomal-associated protein 25 	ENSMUST00000110098.3|Snap25|ENSMUSG00000027273.7|synaptosomal-associated protein 25
mm10_v2_chrX_+_159627265_159627298	0.181445	UGCAUAG	ENSMUST00000112456.2|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr1_-_13372434_13372457	0.176905	UGCAUAG	ENSMUST00000081713.4|Ncoa2|ENSMUSG00000005886.8|nuclear receptor coactivator 2
mm10_v2_chr1_-_151428440_151428474	0.176526	UGCAUAG	ENSMUST00000064771.5|Swt1|ENSMUSG00000052748.8|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
mm10_v2_chr12_+_81859964_81860036	0.174345	UGCAUAG	ENSMUST00000021567.5|Pcnx|ENSMUSG00000021140.8|pecanex homolog (Drosophila)
mm10_v2_chr11_+_29692937_29692997	0.172652	UGCAUAG	ENSMUST00000102843.3|Rtn4|ENSMUSG00000020458.10|reticulon 4 	ENSMUST00000102842.3|Rtn4|ENSMUSG00000020458.10|reticulon 4 	ENSMUST00000078830.4|Rtn4|ENSMUSG00000020458.10|reticulon 4 	ENSMUST00000170731.1|Rtn4|ENSMUSG00000020458.10|reticulon 4
mm10_v2_chr2_-_63184253_63184292	0.171295	UGCAUAG	ENSMUST00000075052.3|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7 	ENSMUST00000112454.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr1_-_77515048_77515102	0.171124	UGCAUAG	ENSMUST00000027451.6|Epha4|ENSMUSG00000026235.8|Eph receptor A4
mm10_v2_chr17_+_43801823_43801863	0.170926	UGCAUAG	ENSMUST00000044895.5|Rcan2|ENSMUSG00000039601.9|regulator of calcineurin 2
mm10_v2_chr13_-_14523178_14523226	0.170307	UGCAUAG	ENSMUST00000110516.2|Hecw1|ENSMUSG00000021301.8|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
mm10_v2_chr7_-_121707253_121707460	0.169821	UGCAUAG	ENSMUST00000046929.6|Usp31|ENSMUSG00000063317.6|ubiquitin specific peptidase 31
mm10_v2_chr3_+_8509477_8509550	0.166548	UGCAUAG	ENSMUST00000029002.7|Stmn2|ENSMUSG00000027500.9|stathmin-like 2
mm10_v2_chr11_-_50325599_50325673	0.166408	UGCAUAG	ENSMUST00000179865.1|Canx|ENSMUSG00000020368.9|calnexin 	ENSMUST00000020637.8|Canx|ENSMUSG00000020368.9|calnexin
mm10_v2_chr9_-_106789130_106789213	0.163567	UGCAUAG	ENSMUST00000046502.5|Rad54l2|ENSMUSG00000040661.5|RAD54 like 2 (S. cerevisiae)
mm10_v2_chr1_-_166002591_166002609	0.163395	UGCAUAG	ENSMUST00000111429.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000176800.1|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr12_+_4917376_4917438	0.163312	UGCAUAG	ENSMUST00000045664.5|Atad2b|ENSMUSG00000052812.4|ATPase family, AAA domain containing 2B
mm10_v2_chr9_-_86695897_86695958	0.163215	UGCAUAG	ENSMUST00000034989.8|Me1|ENSMUSG00000032418.9|malic enzyme 1, NADP(+)-dependent, cytosolic
mm10_v2_chr15_-_50889691_50889714	0.162666	UGCAUAG	ENSMUST00000165201.2|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human) 	ENSMUST00000184458.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chrX_-_141725181_141725263	0.1612	UGCAUAG	ENSMUST00000067841.7|Irs4|ENSMUSG00000054667.7|insulin receptor substrate 4
mm10_v2_chr11_+_69088490_69088553	0.160016	UGCAUAG	ENSMUST00000021273.6|Vamp2|ENSMUSG00000020894.10|vesicle-associated membrane protein 2 	ENSMUST00000117780.1|Vamp2|ENSMUSG00000020894.10|vesicle-associated membrane protein 2
mm10_v2_chr8_+_79639618_79639730	0.159827	UGCAUAG	ENSMUST00000173078.1|Otud4|ENSMUSG00000036990.7|OTU domain containing 4 	ENSMUST00000173286.1|Otud4|ENSMUSG00000036990.7|OTU domain containing 4
mm10_v2_chr9_-_21592805_21592846	0.157647	UGCAUAG	ENSMUST00000034700.7|Yipf2|ENSMUSG00000032182.8|Yip1 domain family, member 2 	ENSMUST00000180365.1|Yipf2|ENSMUSG00000032182.8|Yip1 domain family, member 2 	ENSMUST00000078572.7|Yipf2|ENSMUSG00000032182.8|Yip1 domain family, member 2
mm10_v2_chr11_+_51763682_51763749	0.156854	UGCAUAG	ENSMUST00000020653.5|Sar1b|ENSMUSG00000020386.5|SAR1 gene homolog B (S. cerevisiae)
mm10_v2_chr12_-_59219725_59219776	0.156142	UGCAUAG	ENSMUST00000043204.7|Fbxo33|ENSMUSG00000035329.7|F-box protein 33
mm10_v2_chrX_+_136707976_136708040	0.156005	UGCAUAG	ENSMUST00000055104.5|Tceal1|ENSMUSG00000049536.5|transcription elongation factor A (SII)-like 1
mm10_v2_chr9_-_54560138_54560225	0.155371	UGCAUAG	ENSMUST00000041901.6|Cib2|ENSMUSG00000037493.6|calcium and integrin binding family member 2
mm10_v2_chr11_-_93968293_93968308	0.154756	UGCAUAG	ENSMUST00000170303.1|Gm20390|ENSMUSG00000091228.1|predicted gene 20390
mm10_v2_chr7_+_122067164_122067216	0.154735	UGCAUAG	ENSMUST00000033158.4|Ubfd1|ENSMUSG00000030870.6|ubiquitin family domain containing 1
mm10_v2_chr15_-_53346118_53346169	0.153853	UGCAUAG	ENSMUST00000077273.2|Ext1|ENSMUSG00000061731.3|exostoses (multiple) 1
mm10_v2_chr13_-_105054895_105054930	0.152496	UGCAUAG	ENSMUST00000063551.5|Rgs7bp|ENSMUSG00000021719.8|regulator of G-protein signalling 7 binding protein
mm10_v2_chr14_+_8214135_8214181	0.151151	UGCAUAG	ENSMUST00000022272.6|Kctd6|ENSMUSG00000021752.6|potassium channel tetramerisation domain containing 6
mm10_v2_chr1_-_135585314_135585364	0.149797	UGCAUAG	ENSMUST00000040599.8|Nav1|ENSMUSG00000009418.9|neuron navigator 1 	ENSMUST00000067414.6|Nav1|ENSMUSG00000009418.9|neuron navigator 1
mm10_v2_chr11_+_88068242_88068289	0.149566	UGCAUAG	ENSMUST00000018521.4|Vezf1|ENSMUSG00000018377.4|vascular endothelial zinc finger 1
mm10_v2_chr8_-_34965631_34965714	0.147678	UGCAUAG	ENSMUST00000033929.4|Tnks|ENSMUSG00000031529.4|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm10_v2_chr2_+_48814109_48814173	0.144946	UGCAUAG	ENSMUST00000063886.3|Acvr2a|ENSMUSG00000052155.5|activin receptor IIA
mm10_v2_chr4_-_19708922_19709004	0.144945	UGCAUAG	ENSMUST00000108246.2|Wwp1|ENSMUSG00000041058.9|WW domain containing E3 ubiquitin protein ligase 1
mm10_v2_chr1_-_43827751_43827800	0.141769	UGCAUAG	ENSMUST00000128261.1|Uxs1|ENSMUSG00000057363.6|UDP-glucuronate decarboxylase 1 	ENSMUST00000126008.1|Uxs1|ENSMUSG00000057363.6|UDP-glucuronate decarboxylase 1 	ENSMUST00000139451.1|Uxs1|ENSMUSG00000057363.6|UDP-glucuronate decarboxylase 1
mm10_v2_chr2_+_73271925_73271939	0.137786	UGCAUAG	ENSMUST00000090813.5|Sp9|ENSMUSG00000068859.5|trans-acting transcription factor 9
mm10_v2_chr16_-_11134624_11134659	0.137333	UGCAUAG	ENSMUST00000038424.7|Txndc11|ENSMUSG00000022498.10|thioredoxin domain containing 11
mm10_v2_chr7_-_67372846_67372858	0.137293	UGCAUAG	ENSMUST00000156690.1|Mef2a|ENSMUSG00000030557.10|myocyte enhancer factor 2A 	ENSMUST00000107476.1|Mef2a|ENSMUSG00000030557.10|myocyte enhancer factor 2A 	ENSMUST00000076325.5|Mef2a|ENSMUSG00000030557.10|myocyte enhancer factor 2A 	ENSMUST00000032776.8|Mef2a|ENSMUSG00000030557.10|myocyte enhancer factor 2A 	ENSMUST00000133074.1|Mef2a|ENSMUSG00000030557.10|myocyte enhancer factor 2A
mm10_v2_chr12_+_71015966_71016063	0.136579	UGCAUAG	ENSMUST00000046305.5|Arid4a|ENSMUSG00000048118.11|AT rich interactive domain 4A (RBP1-like)
mm10_v2_chr10_-_109010955_109010983	0.136498	UGCAUAG	ENSMUST00000105276.1|Syt1|ENSMUSG00000035864.8|synaptotagmin I 	ENSMUST00000064054.7|Syt1|ENSMUSG00000035864.8|synaptotagmin I
mm10_v2_chrX_+_82948861_82948915	0.135487	UGCAUAG	ENSMUST00000114000.1|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy
mm10_v2_chr11_+_85311232_85311286	0.135261	UGCAUAG	ENSMUST00000020835.9|Ppm1d|ENSMUSG00000020525.11|protein phosphatase 1D magnesium-dependent, delta isoform
mm10_v2_chr4_-_120747248_120747404	0.13496	UGCAUAG	ENSMUST00000030376.7|Kcnq4|ENSMUSG00000028631.7|potassium voltage-gated channel, subfamily Q, member 4
mm10_v2_chr3_+_103914560_103914605	0.1342	UGCAUAG	ENSMUST00000106806.1|Rsbn1|ENSMUSG00000044098.8|rosbin, round spermatid basic protein 1
mm10_v2_chr8_+_35587780_35587825	0.133929	UGCAUAG	ENSMUST00000037666.5|Mfhas1|ENSMUSG00000070056.5|malignant fibrous histiocytoma amplified sequence 1
mm10_v2_chr12_+_52699297_52699411	0.132376	UGCAUAG	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chr15_+_101174096_101174148	0.130015	UGCAUAG	ENSMUST00000000544.9|Acvr1b|ENSMUSG00000000532.9|activin A receptor, type 1B
mm10_v2_chr11_-_104442232_104442291	0.12972	UGCAUAG	ENSMUST00000106977.1|Kansl1|ENSMUSG00000018412.10|KAT8 regulatory NSL complex subunit 1 	ENSMUST00000106972.1|Kansl1|ENSMUSG00000018412.10|KAT8 regulatory NSL complex subunit 1
mm10_v2_chr12_+_78226627_78226655	0.126527	UGCAUAG	ENSMUST00000110388.2|Gphn|ENSMUSG00000047454.5|gephyrin 	ENSMUST00000052472.4|Gphn|ENSMUSG00000047454.5|gephyrin
mm10_v2_chr4_-_110287479_110287534	0.126209	UGCAUAG	ENSMUST00000106598.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) 	ENSMUST00000102723.4|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) 	ENSMUST00000153906.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr1_+_178187417_178187713	0.126063	UGCAUAG	ENSMUST00000161075.1|Desi2|ENSMUSG00000026502.7|desumoylating isopeptidase 2 	ENSMUST00000027783.7|Desi2|ENSMUSG00000026502.7|desumoylating isopeptidase 2
mm10_v2_chr5_+_72914264_72914304	0.124981	UGCAUAG	ENSMUST00000144843.1|Slain2|ENSMUSG00000036087.12|SLAIN motif family, member 2
mm10_v2_chr5_-_110448486_110448519	0.124352	UGCAUAG	ENSMUST00000069483.5|Fbrsl1|ENSMUSG00000043323.10|fibrosin-like 1
mm10_v2_chr11_-_98329641_98329654	0.124213	UGCAUAG	ENSMUST00000041685.6|Neurod2|ENSMUSG00000038255.6|neurogenic differentiation 2
mm10_v2_chr8_-_60983215_60983319	0.12352	UGCAUAG	ENSMUST00000004430.7|Clcn3|ENSMUSG00000004319.9|chloride channel 3 	ENSMUST00000110301.1|Clcn3|ENSMUSG00000004319.9|chloride channel 3 	ENSMUST00000093490.2|Clcn3|ENSMUSG00000004319.9|chloride channel 3
mm10_v2_chr15_+_40655020_40655054	0.12244	UGCAUAG	ENSMUST00000053467.4|Zfpm2|ENSMUSG00000022306.8|zinc finger protein, multitype 2
mm10_v2_chr13_-_17805093_17805189	0.121938	UGCAUAG	ENSMUST00000042365.7|Cdk13|ENSMUSG00000041297.7|cyclin-dependent kinase 13
mm10_v2_chr14_-_79301623_79301645	0.119787	UGCAUAG	ENSMUST00000022595.7|Rgcc|ENSMUSG00000022018.7|regulator of cell cycle
mm10_v2_chr4_+_106911470_106911511	0.119019	UGCAUAG	ENSMUST00000030367.8|Ssbp3|ENSMUSG00000061887.8|single-stranded DNA binding protein 3 	ENSMUST00000149926.1|Ssbp3|ENSMUSG00000061887.8|single-stranded DNA binding protein 3
mm10_v2_chrX_+_18162575_18162657	0.11887	UGCAUAG	ENSMUST00000044484.6|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A 	ENSMUST00000052368.8|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A
mm10_v2_chr4_-_155222535_155222592	0.1185	UGCAUAG	ENSMUST00000084103.3|Ski|ENSMUSG00000029050.9|ski sarcoma viral oncogene homolog (avian) 	ENSMUST00000030917.5|Ski|ENSMUSG00000029050.9|ski sarcoma viral oncogene homolog (avian)
mm10_v2_chr4_-_143212691_143212728	0.118489	UGCAUAG	ENSMUST00000105778.1|Prdm2|ENSMUSG00000057637.7|PR domain containing 2, with ZNF domain 	ENSMUST00000134791.1|Prdm2|ENSMUSG00000057637.7|PR domain containing 2, with ZNF domain
mm10_v2_chrX_-_13846508_13846591	0.117318	UGCAUAG	ENSMUST00000115436.2|Cask|ENSMUSG00000031012.11|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENSMUST00000033321.4|Cask|ENSMUSG00000031012.11|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENSMUST00000115438.3|Cask|ENSMUSG00000031012.11|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
mm10_v2_chr12_-_118301429_118301458	0.115498	UGCAUAG	ENSMUST00000026367.9|Sp4|ENSMUSG00000025323.9|trans-acting transcription factor 4
mm10_v2_chr10_-_12861735_12861735	0.115231	UGCAUAG	ENSMUST00000076817.4|Utrn|ENSMUSG00000019820.9|utrophin
mm10_v2_chr9_-_42944479_42944510	0.115177	UGCAUAG	ENSMUST00000114865.1|Grik4|ENSMUSG00000032017.8|glutamate receptor, ionotropic, kainate 4
mm10_v2_chr16_-_97922582_97922633	0.113966	UGCAUAG	ENSMUST00000170757.1|C2cd2|ENSMUSG00000045975.7|C2 calcium-dependent domain containing 2
mm10_v2_chr11_+_72796164_72796246	0.112398	UGCAUAG	ENSMUST00000172220.1|Zzef1|ENSMUSG00000055670.7|zinc finger, ZZ-type with EF hand domain 1
mm10_v2_chr1_+_191717834_191717904	0.111914	UGCAUAG	ENSMUST00000110855.1|Lpgat1|ENSMUSG00000026623.10|lysophosphatidylglycerol acyltransferase 1 	ENSMUST00000133076.1|Lpgat1|ENSMUSG00000026623.10|lysophosphatidylglycerol acyltransferase 1
mm10_v2_chr5_-_106696819_106696839	0.111594	UGCAUAG	ENSMUST00000127434.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000112696.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000112698.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644
mm10_v2_chr3_-_108146080_108146150	0.110561	UGCAUAG	ENSMUST00000000001.4|Gnai3|ENSMUSG00000000001.4|guanine nucleotide binding protein (G protein), alpha inhibiting 3
mm10_v2_chr11_+_79339792_79339913	0.108894	UGCAUAG	ENSMUST00000108251.2|Nf1|ENSMUSG00000020716.9|neurofibromatosis 1 	ENSMUST00000071325.2|Nf1|ENSMUSG00000020716.9|neurofibromatosis 1
mm10_v2_chr7_+_123123870_123123901	0.105805	UGCAUAG	ENSMUST00000094053.5|Tnrc6a|ENSMUSG00000052707.7|trinucleotide repeat containing 6a
mm10_v2_chr2_+_153345809_153345889	0.10573	UGCAUAG	ENSMUST00000109790.1|Asxl1|ENSMUSG00000042548.7|additional sex combs like 1
mm10_v2_chr14_-_105176860_105176918	0.105592	UGCAUAG	ENSMUST00000163545.1|Rbm26|ENSMUSG00000022119.9|RNA binding motif protein 26
mm10_v2_chr18_-_15063560_15063617	0.105434	UGCAUAG	ENSMUST00000168989.1|Kctd1|ENSMUSG00000036225.8|potassium channel tetramerisation domain containing 1
mm10_v2_chr15_+_80711292_80711340	0.102783	UGCAUAG	ENSMUST00000067689.7|Tnrc6b|ENSMUSG00000047888.9|trinucleotide repeat containing 6b
mm10_v2_chr19_+_41482632_41482688	0.102633	UGCAUAG	ENSMUST00000067795.5|Lcor|ENSMUSG00000025019.9|ligand dependent nuclear receptor corepressor
mm10_v2_chr12_-_100725028_100725081	0.10184	UGCAUAG	ENSMUST00000043599.6|Rps6ka5|ENSMUSG00000021180.8|ribosomal protein S6 kinase, polypeptide 5
mm10_v2_chr2_-_120609283_120609317	0.101361	UGCAUAG	ENSMUST00000102496.1|Lrrc57|ENSMUSG00000027286.10|leucine rich repeat containing 57
mm10_v2_chr5_+_43233463_43233491	0.100731	UGCAUAG	ENSMUST00000169035.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2 	ENSMUST00000166713.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2
mm10_v2_chr2_-_120970706_120970761	0.100493	UGCAUAG	ENSMUST00000028728.5|Ubr1|ENSMUSG00000027272.5|ubiquitin protein ligase E3 component n-recognin 1
mm10_v2_chr3_-_69127098_69127113	0.0991093	UGCAUAG	ENSMUST00000029353.2|Kpna4|ENSMUSG00000027782.4|karyopherin (importin) alpha 4
mm10_v2_chr4_-_122886044_122886068	0.0974388	UGCAUAG	ENSMUST00000106255.1|Cap1|ENSMUSG00000028656.8|CAP, adenylate cyclase-associated protein 1 (yeast) 	ENSMUST00000106257.3|Cap1|ENSMUSG00000028656.8|CAP, adenylate cyclase-associated protein 1 (yeast)
mm10_v2_chr8_+_106059562_106059623	0.0972274	UGCAUAG	ENSMUST00000109308.1|Nfatc3|ENSMUSG00000031902.9|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3
mm10_v2_chr13_+_41606216_41606216	0.0966696	UGCAUAG	ENSMUST00000129449.1|Tmem170b|ENSMUSG00000087370.2|transmembrane protein 170B
mm10_v2_chr6_+_115134899_115134982	0.0935824	UGCAUAG	ENSMUST00000009538.5|Syn2|ENSMUSG00000009394.7|synapsin II 	ENSMUST00000169345.1|Syn2|ENSMUSG00000009394.7|synapsin II
mm10_v2_chr11_-_88718223_88718294	0.0934938	UGCAUAG	ENSMUST00000107909.1|Msi2|ENSMUSG00000069769.7|musashi RNA-binding protein 2
mm10_v2_chr13_+_111686178_111686210	0.0927292	UGCAUAG	ENSMUST00000109272.2|Mier3|ENSMUSG00000032727.7|mesoderm induction early response 1, family member 3
mm10_v2_chr3_-_69859875_69859901	0.0918492	UGCAUAG	ENSMUST00000051239.7|Sptssb|ENSMUSG00000043461.7|serine palmitoyltransferase, small subunit B 	ENSMUST00000171529.1|Sptssb|ENSMUSG00000043461.7|serine palmitoyltransferase, small subunit B
mm10_v2_chr11_-_103412668_103412711	0.0899748	UGCAUAG	ENSMUST00000041272.9|Plekhm1|ENSMUSG00000034247.9|pleckstrin homology domain containing, family M (with RUN domain) member 1
mm10_v2_chr13_+_23807027_23807063	0.0882315	UGCAUAG	ENSMUST00000006786.4|Slc17a2|ENSMUSG00000036110.8|solute carrier family 17 (sodium phosphate), member 2 	ENSMUST00000099697.2|Slc17a2|ENSMUSG00000036110.8|solute carrier family 17 (sodium phosphate), member 2
mm10_v2_chr14_+_67716095_67716151	0.0870715	UGCAUAG	ENSMUST00000078053.6|Kctd9|ENSMUSG00000034327.11|potassium channel tetramerisation domain containing 9 	ENSMUST00000145542.1|Kctd9|ENSMUSG00000034327.11|potassium channel tetramerisation domain containing 9 	ENSMUST00000125212.1|Kctd9|ENSMUSG00000034327.11|potassium channel tetramerisation domain containing 9
mm10_v2_chr7_+_100706702_100706731	0.0860251	UGCAUAG	ENSMUST00000049053.7|Fam168a|ENSMUSG00000029461.9|family with sequence similarity 168, member A
mm10_v2_chr13_-_24280716_24280795	0.0843731	UGCAUAG	ENSMUST00000110398.2|Lrrc16a|ENSMUSG00000021338.11|leucine rich repeat containing 16A 	ENSMUST00000072889.5|Lrrc16a|ENSMUSG00000021338.11|leucine rich repeat containing 16A
mm10_v2_chr1_+_105990384_105990498	0.0840826	UGCAUAG	ENSMUST00000119166.1|Zcchc2|ENSMUSG00000038866.9|zinc finger, CCHC domain containing 2
mm10_v2_chr13_-_17944151_17944239	0.0833249	UGCAUAG	ENSMUST00000009003.7|Rala|ENSMUSG00000008859.7|v-ral simian leukemia viral oncogene homolog A (ras related)
mm10_v2_chr6_-_127151044_127151055	0.0819068	UGCAUAG	ENSMUST00000000188.8|Ccnd2|ENSMUSG00000000184.9|cyclin D2
mm10_v2_chr16_-_97962581_97962636	0.0818881	UGCAUAG	ENSMUST00000113734.2|Zbtb21|ENSMUSG00000046962.9|zinc finger and BTB domain containing 21 	ENSMUST00000052089.7|Zbtb21|ENSMUSG00000046962.9|zinc finger and BTB domain containing 21 	ENSMUST00000063605.7|Zbtb21|ENSMUSG00000046962.9|zinc finger and BTB domain containing 21
mm10_v2_chr6_-_86733268_86733394	0.0786008	UGCAUAG	ENSMUST00000001185.7|Gmcl1|ENSMUSG00000001157.7|germ cell-less homolog 1 (Drosophila)
mm10_v2_chr2_-_113217051_113217094	0.078515	UGCAUAG	ENSMUST00000080673.5|Ryr3|ENSMUSG00000057378.8|ryanodine receptor 3
mm10_v2_chr4_+_11156411_11156453	0.0781289	UGCAUAG	ENSMUST00000029865.3|Trp53inp1|ENSMUSG00000028211.5|transformation related protein 53 inducible nuclear protein 1
mm10_v2_chr2_+_76675265_76675287	0.0776504	UGCAUAG	ENSMUST00000111920.1|Plekha3|ENSMUSG00000002733.8|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3
mm10_v2_chr9_-_52168111_52168111	0.077579	UGCAUAG	ENSMUST00000165519.1|Zc3h12c|ENSMUSG00000035164.7|zinc finger CCCH type containing 12C
mm10_v2_chr11_+_97415527_97415538	0.0775504	UGCAUAG	ENSMUST00000121799.1|Arhgap23|ENSMUSG00000049807.10|Rho GTPase activating protein 23
mm10_v2_chr10_-_30842765_30842801	0.0752406	UGCAUAG	ENSMUST00000019924.8|Hey2|ENSMUSG00000019789.8|hairy/enhancer-of-split related with YRPW motif 2
mm10_v2_chr1_-_190978954_190978998	0.0742863	UGCAUAG	ENSMUST00000047409.6|Vash2|ENSMUSG00000037568.6|vasohibin 2
mm10_v2_chr11_+_94327984_94328029	0.0738403	UGCAUAG	ENSMUST00000107818.2|Ankrd40|ENSMUSG00000020864.7|ankyrin repeat domain 40 	ENSMUST00000051221.6|Ankrd40|ENSMUSG00000020864.7|ankyrin repeat domain 40
mm10_v2_chr14_+_45351473_45351473	0.0731966	UGCAUAG	ENSMUST00000111835.2|Styx|ENSMUSG00000053205.8|serine/threonine/tyrosine interaction protein
mm10_v2_chr3_-_142881942_142882017	0.0716296	UGCAUAG	ENSMUST00000043812.8|Pkn2|ENSMUSG00000004591.10|protein kinase N2
mm10_v2_chr7_-_138397704_138397786	0.071472	UGCAUAG	ENSMUST00000160436.1|Tcerg1l|ENSMUSG00000091002.2|transcription elongation regulator 1-like
mm10_v2_chr4_+_97777606_97777632	0.0711355	UGCAUAG	ENSMUST00000075448.6|Nfia|ENSMUSG00000028565.12|nuclear factor I/A 	ENSMUST00000092532.6|Nfia|ENSMUSG00000028565.12|nuclear factor I/A
mm10_v2_chr7_-_63938862_63938933	0.0706998	UGCAUAG	ENSMUST00000063694.8|Klf13|ENSMUSG00000052040.9|Kruppel-like factor 13
mm10_v2_chr5_-_144965793_144965877	0.0692022	UGCAUAG	ENSMUST00000110677.1|Smurf1|ENSMUSG00000038780.8|SMAD specific E3 ubiquitin protein ligase 1 	ENSMUST00000085684.4|Smurf1|ENSMUSG00000038780.8|SMAD specific E3 ubiquitin protein ligase 1 	ENSMUST00000100461.2|Smurf1|ENSMUSG00000038780.8|SMAD specific E3 ubiquitin protein ligase 1
mm10_v2_chr7_-_116038734_116038750	0.0683584	UGCAUAG	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr2_-_52676571_52676588	0.0671111	UGCAUAG	ENSMUST00000178799.1|Cacnb4|ENSMUSG00000017412.9|calcium channel, voltage-dependent, beta 4 subunit
mm10_v2_chr1_-_133753681_133753857	0.0668055	UGCAUAG	ENSMUST00000125659.1|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4 	ENSMUST00000165602.2|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4 	ENSMUST00000048953.7|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4
mm10_v2_chr5_-_67427794_67427813	0.0666229	UGCAUAG	ENSMUST00000169190.1|Bend4|ENSMUSG00000092060.1|BEN domain containing 4
mm10_v2_chr10_+_58446845_58446928	0.0664161	UGCAUAG	ENSMUST00000003310.5|Ranbp2|ENSMUSG00000003226.6|RAN binding protein 2
mm10_v2_chr16_-_94313556_94313577	0.0659436	UGCAUAG	ENSMUST00000163193.1|Hlcs|ENSMUSG00000040820.9|holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)
mm10_v2_chr10_-_115384388_115384435	0.0641962	UGCAUAG	ENSMUST00000020346.4|Thap2|ENSMUSG00000020137.4|THAP domain containing, apoptosis associated protein 2
mm10_v2_chr18_-_72351029_72351073	0.0633841	UGCAUAG	ENSMUST00000114943.3|Dcc|ENSMUSG00000060534.9|deleted in colorectal carcinoma
mm10_v2_chr15_+_34082664_34082734	0.0624389	UGCAUAG	ENSMUST00000022865.9|Mtdh|ENSMUSG00000022255.9|metadherin
mm10_v2_chr1_-_170867761_170867784	0.0618744	UGCAUAG	ENSMUST00000027974.6|Atf6|ENSMUSG00000026663.6|activating transcription factor 6
mm10_v2_chr9_-_82975475_82975493	0.0609337	UGCAUAG	ENSMUST00000034787.5|Phip|ENSMUSG00000032253.7|pleckstrin homology domain interacting protein
mm10_v2_chr11_-_59228162_59228270	0.060466	UGCAUAG	ENSMUST00000163300.1|Arf1|ENSMUSG00000048076.8|ADP-ribosylation factor 1 	ENSMUST00000061242.7|Arf1|ENSMUSG00000048076.8|ADP-ribosylation factor 1
mm10_v2_chr12_-_85339346_85339391	0.0602997	UGCAUAG	ENSMUST00000040992.7|Nek9|ENSMUSG00000034290.9|NIMA (never in mitosis gene a)-related expressed kinase 9
mm10_v2_chr14_+_8098196_8098296	0.0600757	UGCAUAG	ENSMUST00000112689.2|Pxk|ENSMUSG00000033885.8|PX domain containing serine/threonine kinase 	ENSMUST00000036682.7|Pxk|ENSMUSG00000033885.8|PX domain containing serine/threonine kinase
mm10_v2_chr2_+_76406529_76406580	0.0588739	UGCAUAG	ENSMUST00000111929.1|Osbpl6|ENSMUSG00000042359.12|oxysterol binding protein-like 6 	ENSMUST00000077972.4|Osbpl6|ENSMUSG00000042359.12|oxysterol binding protein-like 6 	ENSMUST00000111930.2|Osbpl6|ENSMUSG00000042359.12|oxysterol binding protein-like 6
mm10_v2_chr11_+_95712673_95712673	0.0574779	UGCAUAG	ENSMUST00000107717.1|Zfp652|ENSMUSG00000075595.3|zinc finger protein 652
mm10_v2_chr17_-_51832666_51832678	0.0560146	UGCAUAG	ENSMUST00000144331.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr4_+_124802543_124802678	0.0556063	UGCAUAG	ENSMUST00000138807.1|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1 	ENSMUST00000030723.2|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1 	ENSMUST00000175875.1|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1
mm10_v2_chr18_-_46525940_46525999	0.0552435	UGCAUAG	ENSMUST00000036226.5|Fem1c|ENSMUSG00000033319.5|fem-1 homolog c (C.elegans)
mm10_v2_chr7_+_80993658_80993698	0.053777	UGCAUAG	ENSMUST00000107353.2|Zfp592|ENSMUSG00000005621.11|zinc finger protein 592
mm10_v2_chr4_-_135433744_135433869	0.0528755	UGCAUAG	ENSMUST00000156635.1|Rcan3|ENSMUSG00000059713.6|regulator of calcineurin 3 	ENSMUST00000030606.7|Rcan3|ENSMUSG00000059713.6|regulator of calcineurin 3
mm10_v2_chr6_-_39206782_39206831	0.0528688	UGCAUAG	ENSMUST00000002305.8|Jhdm1d|ENSMUSG00000042599.8|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm10_v2_chr14_+_30825580_30825640	0.0525755	UGCAUAG	ENSMUST00000006701.5|Tmem110|ENSMUSG00000006526.5|transmembrane protein 110
mm10_v2_chr4_+_32657107_32657166	0.0519035	UGCAUAG	ENSMUST00000071642.4|Mdn1|ENSMUSG00000058006.6|midasin homolog (yeast) 	ENSMUST00000178134.1|Mdn1|ENSMUSG00000058006.6|midasin homolog (yeast)
mm10_v2_chrX_+_161162744_161162775	0.0504337	UGCAUAG	ENSMUST00000074802.5|Scml2|ENSMUSG00000000037.10|sex comb on midleg-like 2 (Drosophila) 	ENSMUST00000019101.4|Scml2|ENSMUSG00000000037.10|sex comb on midleg-like 2 (Drosophila) 	ENSMUST00000112345.1|Scml2|ENSMUSG00000000037.10|sex comb on midleg-like 2 (Drosophila)
mm10_v2_chr15_-_38519227_38519271	0.0499241	UGCAUAG	ENSMUST00000110328.1|Azin1|ENSMUSG00000037458.8|antizyme inhibitor 1 	ENSMUST00000110329.1|Azin1|ENSMUSG00000037458.8|antizyme inhibitor 1 	ENSMUST00000065308.5|Azin1|ENSMUSG00000037458.8|antizyme inhibitor 1
mm10_v2_chr11_+_110399115_110399155	0.0485846	UGCAUAG	ENSMUST00000020949.5|Map2k6|ENSMUSG00000020623.5|mitogen-activated protein kinase kinase 6 	ENSMUST00000100260.1|Map2k6|ENSMUSG00000020623.5|mitogen-activated protein kinase kinase 6
mm10_v2_chr6_+_108213086_108213123	0.0485435	UGCAUAG	ENSMUST00000032192.6|Itpr1|ENSMUSG00000030102.8|inositol 1,4,5-trisphosphate receptor 1
mm10_v2_chr10_+_108162358_108162408	0.0481755	UGCAUAG	ENSMUST00000070663.5|Ppp1r12a|ENSMUSG00000019907.9|protein phosphatase 1, regulatory (inhibitor) subunit 12A
mm10_v2_chr3_-_133544390_133544412	0.0475128	UGCAUAG	ENSMUST00000098603.3|Tet2|ENSMUSG00000040943.8|tet methylcytosine dioxygenase 2
mm10_v2_chr11_+_102041509_102041531	0.0474284	UGCAUAG	ENSMUST00000123895.1|Cd300lg|ENSMUSG00000017309.5|CD300 antigen like family member G 	ENSMUST00000017453.5|Cd300lg|ENSMUSG00000017309.5|CD300 antigen like family member G 	ENSMUST00000107163.2|Cd300lg|ENSMUSG00000017309.5|CD300 antigen like family member G 	ENSMUST00000107164.2|Cd300lg|ENSMUSG00000017309.5|CD300 antigen like family member G
mm10_v2_chr17_-_27820534_27820572	0.0471899	UGCAUAG	ENSMUST00000075076.4|D17Wsu92e|ENSMUSG00000056692.6|DNA segment, Chr 17, Wayne State University 92, expressed 	ENSMUST00000114863.2|D17Wsu92e|ENSMUSG00000056692.6|DNA segment, Chr 17, Wayne State University 92, expressed
mm10_v2_chrX_+_7822289_7822289	0.0459345	UGCAUAG	ENSMUST00000009875.4|Kcnd1|ENSMUSG00000009731.4|potassium voltage-gated channel, Shal-related family, member 1
mm10_v2_chr2_-_73892530_73892555	0.0457449	UGCAUAG	ENSMUST00000136958.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000112010.2|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000128531.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000112017.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2
mm10_v2_chr15_-_103239812_103239888	0.0456296	UGCAUAG	ENSMUST00000118152.1|Cbx5|ENSMUSG00000009575.8|chromobox 5
mm10_v2_chr18_-_84086379_84086404	0.0451687	UGCAUAG	ENSMUST00000060303.8|Tshz1|ENSMUSG00000046982.9|teashirt zinc finger family member 1
mm10_v2_chr7_-_28962265_28962340	0.0440698	UGCAUAG	ENSMUST00000068045.7|Actn4|ENSMUSG00000054808.7|actinin alpha 4
mm10_v2_chr18_+_34220978_34221020	0.0440227	UGCAUAG	ENSMUST00000079362.5|Apc|ENSMUSG00000005871.8|adenomatosis polyposis coli 	ENSMUST00000115781.3|Apc|ENSMUSG00000005871.8|adenomatosis polyposis coli
mm10_v2_chr6_-_32588192_32588213	0.0437827	UGCAUAG	ENSMUST00000115096.2|Plxna4|ENSMUSG00000029765.10|plexin A4
mm10_v2_chr4_+_53440516_53440684	0.0432374	UGCAUAG	ENSMUST00000107651.2|Slc44a1|ENSMUSG00000028412.11|solute carrier family 44, member 1 	ENSMUST00000107647.1|Slc44a1|ENSMUSG00000028412.11|solute carrier family 44, member 1
mm10_v2_chr16_-_21694570_21694665	0.042913	UGCAUAG	ENSMUST00000053336.7|2510009E07Rik|ENSMUSG00000043391.9|RIKEN cDNA 2510009E07 gene
mm10_v2_chr2_+_37452231_37452286	0.0421459	UGCAUAG	ENSMUST00000148470.1|Rabgap1|ENSMUSG00000035437.9|RAB GTPase activating protein 1 	ENSMUST00000066055.3|Rabgap1|ENSMUSG00000035437.9|RAB GTPase activating protein 1 	ENSMUST00000112920.1|Rabgap1|ENSMUSG00000035437.9|RAB GTPase activating protein 1
mm10_v2_chr8_-_109737714_109737786	0.0415345	UGCAUAG	ENSMUST00000093162.3|Atxn1l|ENSMUSG00000069895.3|ataxin 1-like
mm10_v2_chr14_-_36968769_36968793	0.0415059	UGCAUAG	ENSMUST00000090024.4|Ccser2|ENSMUSG00000058690.8|coiled-coil serine rich 2
mm10_v2_chr13_-_85288999_85289058	0.0409376	UGCAUAG	ENSMUST00000109552.2|Rasa1|ENSMUSG00000021549.7|RAS p21 protein activator 1
mm10_v2_chr8_-_80880479_80880499	0.0401924	UGCAUAG	ENSMUST00000034150.8|Gab1|ENSMUSG00000031714.8|growth factor receptor bound protein 2-associated protein 1
mm10_v2_chr11_-_86757483_86757572	0.0399477	UGCAUAG	ENSMUST00000060766.9|Cltc|ENSMUSG00000047126.11|clathrin, heavy polypeptide (Hc) 	ENSMUST00000103186.4|Cltc|ENSMUSG00000047126.11|clathrin, heavy polypeptide (Hc)
mm10_v2_chr1_+_5588493_5588557	0.0396435	UGCAUAG	ENSMUST00000160777.1|Oprk1|ENSMUSG00000025905.7|opioid receptor, kappa 1 	ENSMUST00000027038.4|Oprk1|ENSMUSG00000025905.7|opioid receptor, kappa 1
mm10_v2_chr2_+_152081529_152081624	0.0393972	UGCAUAG	ENSMUST00000064061.3|Scrt2|ENSMUSG00000060257.2|scratch homolog 2, zinc finger protein (Drosophila)
mm10_v2_chr18_+_36281069_36281151	0.0391423	UGCAUAG	ENSMUST00000051301.3|Pura|ENSMUSG00000043991.3|purine rich element binding protein A
mm10_v2_chr14_-_103099499_103099554	0.0390962	UGCAUAG	ENSMUST00000022720.8|Fbxl3|ENSMUSG00000022124.8|F-box and leucine-rich repeat protein 3
mm10_v2_chr1_-_138842429_138842457	0.0385309	UGCAUAG	ENSMUST00000112026.2|Lhx9|ENSMUSG00000019230.8|LIM homeobox protein 9 	ENSMUST00000019374.7|Lhx9|ENSMUSG00000019230.8|LIM homeobox protein 9
mm10_v2_chr5_+_34573664_34573737	0.0367102	UGCAUAG	ENSMUST00000114338.2|Add1|ENSMUSG00000029106.8|adducin 1 (alpha)
mm10_v2_chr12_+_16894894_16894978	0.0363591	UGCAUAG	ENSMUST00000020904.6|Rock2|ENSMUSG00000020580.9|Rho-associated coiled-coil containing protein kinase 2
mm10_v2_chr4_+_31964081_31964263	0.0355573	UGCAUAG	ENSMUST00000037607.4|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7 	ENSMUST00000080933.6|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7 	ENSMUST00000108183.1|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7 	ENSMUST00000108184.2|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7
mm10_v2_chr10_-_119240006_119240092	0.0354846	UGCAUAG	ENSMUST00000020315.6|Cand1|ENSMUSG00000020114.6|cullin associated and neddylation disassociated 1
mm10_v2_chr1_-_34843050_34843065	0.035441	UGCAUAG	ENSMUST00000170092.1|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B 	ENSMUST00000167518.1|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B 	ENSMUST00000047534.5|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B
mm10_v2_chr3_+_54156039_54156074	0.0353117	UGCAUAG	ENSMUST00000029311.6|Trpc4|ENSMUSG00000027748.7|transient receptor potential cation channel, subfamily C, member 4
mm10_v2_chr9_-_54501496_54501644	0.0353075	UGCAUAG	ENSMUST00000118600.1|Dmxl2|ENSMUSG00000041268.10|Dmx-like 2 	ENSMUST00000118163.1|Dmxl2|ENSMUSG00000041268.10|Dmx-like 2
mm10_v2_chr12_-_102878406_102878449	0.0338358	UGCAUAG	ENSMUST00000045652.6|Btbd7|ENSMUSG00000041702.6|BTB (POZ) domain containing 7
mm10_v2_chr12_-_27342696_27342726	0.0337367	UGCAUAG	ENSMUST00000079063.5|Sox11|ENSMUSG00000063632.5|SRY-box containing gene 11
mm10_v2_chr17_-_12318660_12318684	0.0319503	UGCAUAG	ENSMUST00000089058.5|Map3k4|ENSMUSG00000014426.8|mitogen-activated protein kinase kinase kinase 4
mm10_v2_chr5_+_93093428_93093457	0.0317365	UGCAUAG	ENSMUST00000074733.7|Sept11|ENSMUSG00000058013.8|septin 11
mm10_v2_chr3_-_101110278_101110294	0.0312505	UGCAUAG	ENSMUST00000102694.3|Ptgfrn|ENSMUSG00000027864.8|prostaglandin F2 receptor negative regulator
mm10_v2_chr12_-_80436571_80436603	0.0312085	UGCAUAG	ENSMUST00000054145.6|Dcaf5|ENSMUSG00000049106.6|DDB1 and CUL4 associated factor 5
mm10_v2_chr8_+_117257019_117257107	0.0311003	UGCAUAG	ENSMUST00000166750.1|Cmip|ENSMUSG00000034390.9|c-Maf inducing protein
mm10_v2_chr11_+_49794157_49794187	0.0307251	UGCAUAG	ENSMUST00000020629.4|Gfpt2|ENSMUSG00000020363.6|glutamine fructose-6-phosphate transaminase 2
mm10_v2_chr6_+_100704709_100704742	0.0299626	UGCAUAG	ENSMUST00000032157.7|Gxylt2|ENSMUSG00000030074.8|glucoside xylosyltransferase 2
mm10_v2_chr10_-_42276744_42276763	0.0297974	UGCAUAG	ENSMUST00000105502.1|Foxo3|ENSMUSG00000048756.5|forkhead box O3 	ENSMUST00000105501.1|Foxo3|ENSMUSG00000048756.5|forkhead box O3
mm10_v2_chr8_-_8660773_8660773	0.0291205	UGCAUAG	ENSMUST00000001319.7|Efnb2|ENSMUSG00000001300.9|ephrin B2
mm10_v2_chr4_+_57434247_57434368	0.0290787	UGCAUAG	ENSMUST00000102905.1|Palm2|ENSMUSG00000090053.3|paralemmin 2
mm10_v2_chr5_+_130448801_130448830	0.0288093	UGCAUAG	ENSMUST00000111288.2|Caln1|ENSMUSG00000060371.6|calneuron 1
mm10_v2_chr11_-_46312220_46312358	0.0272925	UGCAUAG	ENSMUST00000129474.1|Cyfip2|ENSMUSG00000020340.10|cytoplasmic FMR1 interacting protein 2 	ENSMUST00000093166.4|Cyfip2|ENSMUSG00000020340.10|cytoplasmic FMR1 interacting protein 2 	ENSMUST00000165599.2|Cyfip2|ENSMUSG00000020340.10|cytoplasmic FMR1 interacting protein 2
mm10_v2_chr16_+_37539883_37539918	0.0266276	UGCAUAG	ENSMUST00000023524.6|Rabl3|ENSMUSG00000022827.8|RAB, member of RAS oncogene family-like 3
mm10_v2_chr14_+_121035538_121035575	0.0262447	UGCAUAG	ENSMUST00000026635.7|Farp1|ENSMUSG00000025555.8|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
mm10_v2_chr3_-_19311269_19311322	0.0261752	UGCAUAG	ENSMUST00000099195.3|Pde7a|ENSMUSG00000069094.6|phosphodiesterase 7A
mm10_v2_chr9_+_57910974_57911023	0.026013	UGCAUAG	ENSMUST00000163329.1|Ubl7|ENSMUSG00000055720.9|ubiquitin-like 7 (bone marrow stromal cell-derived)
mm10_v2_chr5_-_143269958_143270022	0.0253784	UGCAUAG	ENSMUST00000161448.1|Zfp316|ENSMUSG00000046658.10|zinc finger protein 316
mm10_v2_chr3_-_104818224_104818242	0.0253232	UGCAUAG	ENSMUST00000002297.5|Mov10|ENSMUSG00000002227.9|Moloney leukemia virus 10
mm10_v2_chr9_-_108190352_108190420	0.0250668	UGCAUAG	ENSMUST00000035208.7|Bsn|ENSMUSG00000032589.8|bassoon
mm10_v2_chr8_+_40511769_40511787	0.0249323	UGCAUAG	ENSMUST00000098817.2|Vps37a|ENSMUSG00000031600.10|vacuolar protein sorting 37A (yeast)
mm10_v2_chr16_-_50432340_50432409	0.0242329	UGCAUAG	ENSMUST00000066037.6|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089399.4|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089404.3|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000114477.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000138166.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila)
mm10_v2_chr9_-_44881274_44881323	0.0235539	UGCAUAG	ENSMUST00000002095.3|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A 	ENSMUST00000114689.1|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A 	ENSMUST00000128768.1|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A
mm10_v2_chr2_+_59160884_59161008	0.0222571	UGCAUAG	ENSMUST00000037903.8|Pkp4|ENSMUSG00000026991.14|plakophilin 4
mm10_v2_chr10_-_95564167_95564181	0.0220629	UGCAUAG	ENSMUST00000020217.5|Nudt4|ENSMUSG00000020029.5|nudix (nucleoside diphosphate linked moiety X)-type motif 4
mm10_v2_chr14_+_49066495_49066587	0.0218184	UGCAUAG	ENSMUST00000037473.4|Ap5m1|ENSMUSG00000036291.5|adaptor-related protein complex 5, mu 1 subunit
mm10_v2_chr14_-_105896819_105896819	0.0215966	UGCAUAG	ENSMUST00000022709.4|Spry2|ENSMUSG00000022114.4|sprouty homolog 2 (Drosophila)
mm10_v2_chr6_+_145211134_145211222	0.0203822	UGCAUAG	ENSMUST00000111725.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111726.3|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000039729.3|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111723.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111724.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111721.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111719.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5
mm10_v2_chr7_-_30588717_30588749	0.0190926	UGCAUAG	ENSMUST00000006470.7|Kmt2b|ENSMUSG00000006307.10|lysine (K)-specific methyltransferase 2B 	ENSMUST00000108154.2|Kmt2b|ENSMUSG00000006307.10|lysine (K)-specific methyltransferase 2B
mm10_v2_chr2_-_37443096_37443178	0.0181288	UGCAUAG	ENSMUST00000102789.2|Zbtb26|ENSMUSG00000050714.8|zinc finger and BTB domain containing 26 	ENSMUST00000067043.4|Zbtb26|ENSMUSG00000050714.8|zinc finger and BTB domain containing 26 	ENSMUST00000112932.1|Zbtb6|ENSMUSG00000066798.3|zinc finger and BTB domain containing 6
mm10_v2_chr5_-_143180721_143180795	0.017404	UGCAUAG	ENSMUST00000164068.1|Rbak|ENSMUSG00000061898.4|RB-associated KRAB repressor 	ENSMUST00000049861.4|Rbak|ENSMUSG00000061898.4|RB-associated KRAB repressor 	ENSMUST00000165318.1|Rbak|ENSMUSG00000061898.4|RB-associated KRAB repressor
mm10_v2_chr10_+_84917616_84917656	0.0153425	UGCAUAG	ENSMUST00000038523.7|Ric8b|ENSMUSG00000035620.8|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans) 	ENSMUST00000095385.3|Ric8b|ENSMUSG00000035620.8|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)
mm10_v2_chr2_-_24763047_24763153	0.0138237	UGCAUAG	ENSMUST00000100348.3|Cacna1b|ENSMUSG00000004113.12|calcium channel, voltage-dependent, N type, alpha 1B subunit 	ENSMUST00000041342.5|Cacna1b|ENSMUSG00000004113.12|calcium channel, voltage-dependent, N type, alpha 1B subunit 	ENSMUST00000114447.1|Cacna1b|ENSMUSG00000004113.12|calcium channel, voltage-dependent, N type, alpha 1B subunit 	ENSMUST00000102939.2|Cacna1b|ENSMUSG00000004113.12|calcium channel, voltage-dependent, N type, alpha 1B subunit 	ENSMUST00000070864.7|Cacna1b|ENSMUSG00000004113.12|calcium channel, voltage-dependent, N type, alpha 1B subunit
mm10_v2_chr17_-_44736648_44736674	0.0136546	UGCAUAG	ENSMUST00000113572.2|Runx2|ENSMUSG00000039153.10|runt related transcription factor 2
mm10_v2_chr10_-_117148474_117148510	0.0121344	UGCAUAG	ENSMUST00000020381.3|Frs2|ENSMUSG00000020170.3|fibroblast growth factor receptor substrate 2
mm10_v2_chr2_-_33431324_33431324	0.0119745	UGCAUAG	ENSMUST00000113158.1|Zbtb34|ENSMUSG00000068966.4|zinc finger and BTB domain containing 34
mm10_v2_chr19_+_3767397_3767523	0.00926516	UGCAUAG	ENSMUST00000113974.4|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000113972.2|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000113973.1|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000113977.2|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000052699.6|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000113968.2|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila)
mm10_v2_chr12_+_95692212_95692246	0.00873008	UGCAUAG	ENSMUST00000057324.3|Flrt2|ENSMUSG00000047414.6|fibronectin leucine rich transmembrane protein 2
mm10_v2_chr10_+_7681197_7681225	0.00699524	UGCAUAG	ENSMUST00000165952.1|Lats1|ENSMUSG00000040021.6|large tumor suppressor
mm10_v2_chr13_-_24831409_24831518	0.00594181	UGCAUAG	ENSMUST00000006900.6|Acot13|ENSMUSG00000006717.6|acyl-CoA thioesterase 13
mm10_v2_chr6_-_88045190_88045270	0.00560852	UGCAUAG	ENSMUST00000113596.1|Rab7|ENSMUSG00000079477.3|RAB7, member RAS oncogene family 	ENSMUST00000113600.3|Rab7|ENSMUSG00000079477.3|RAB7, member RAS oncogene family
mm10_v2_chr8_+_56551090_56551143	0.00487437	UGCAUAG	ENSMUST00000040218.5|Fbxo8|ENSMUSG00000038206.6|F-box protein 8 	ENSMUST00000110322.3|Fbxo8|ENSMUSG00000038206.6|F-box protein 8
mm10_v2_chr8_-_69996326_69996379	0.0045098	UGCAUAG	ENSMUST00000177851.1|Gatad2a|ENSMUSG00000036180.8|GATA zinc finger domain containing 2A 	ENSMUST00000065169.4|Gatad2a|ENSMUSG00000036180.8|GATA zinc finger domain containing 2A
mm10_v2_chr10_+_122678764_122678811	0.00211978	UGCAUAG	ENSMUST00000161487.1|Ppm1h|ENSMUSG00000034613.6|protein phosphatase 1H (PP2C domain containing) 	ENSMUST00000067918.5|Ppm1h|ENSMUSG00000034613.6|protein phosphatase 1H (PP2C domain containing)
mm10_v2_chr15_-_58214882_58214926	0.000692286	UGCAUAG	ENSMUST00000022986.6|Fbxo32|ENSMUSG00000022358.6|F-box protein 32
