mm10_v2_chr6_+_107529717_107529780	1.18799	UGUGCUU	ENSMUST00000049285.8|Lrrn1|ENSMUSG00000034648.8|leucine rich repeat protein 1, neuronal
mm10_v2_chr8_-_38661508_38661545	1.14505	UGUGCUU	ENSMUST00000118896.1|Sgcz|ENSMUSG00000039539.7|sarcoglycan zeta
mm10_v2_chr4_+_120854786_120854843	1.01544	UGUGCUU	ENSMUST00000071093.2|Rims3|ENSMUSG00000032890.11|regulating synaptic membrane exocytosis 3
mm10_v2_chr13_-_34345174_34345273	0.872093	UGUGCUU	ENSMUST00000040336.5|Slc22a23|ENSMUSG00000038267.8|solute carrier family 22, member 23
mm10_v2_chr7_-_134938264_134938430	0.812688	UGUGCUU	ENSMUST00000171394.1|Fam196a|ENSMUSG00000073805.4|family with sequence similarity 196, member A
mm10_v2_chr13_+_89540636_89540678	0.763713	UGUGCUU	ENSMUST00000022108.7|Hapln1|ENSMUSG00000021613.8|hyaluronan and proteoglycan link protein 1
mm10_v2_chr11_+_34314757_34314822	0.731547	UGUGCUU	ENSMUST00000165963.1|Fam196b|ENSMUSG00000069911.4|family with sequence similarity 196, member B 	ENSMUST00000093192.3|Fam196b|ENSMUSG00000069911.4|family with sequence similarity 196, member B
mm10_v2_chrX_+_139684980_139685082	0.717173	UGUGCUU	ENSMUST00000096313.3|Tbc1d8b|ENSMUSG00000042473.8|TBC1 domain family, member 8B
mm10_v2_chr6_-_118197732_118197744	0.715855	UGUGCUU	ENSMUST00000032201.5|Ret|ENSMUSG00000030110.7|ret proto-oncogene 	ENSMUST00000088790.3|Ret|ENSMUSG00000030110.7|ret proto-oncogene
mm10_v2_chr1_+_192190771_192190821	0.70151	UGUGCUU	ENSMUST00000078470.5|Kcnh1|ENSMUSG00000058248.6|potassium voltage-gated channel, subfamily H (eag-related), member 1 	ENSMUST00000110844.1|Kcnh1|ENSMUSG00000058248.6|potassium voltage-gated channel, subfamily H (eag-related), member 1
mm10_v2_chr19_-_58455398_58455458	0.662044	UGUGCUU	ENSMUST00000026076.7|Gfra1|ENSMUSG00000025089.9|glial cell line derived neurotrophic factor family receptor alpha 1
mm10_v2_chr11_-_47379405_47379522	0.661083	UGUGCUU	ENSMUST00000077221.5|Sgcd|ENSMUSG00000020354.9|sarcoglycan, delta (dystrophin-associated glycoprotein)
mm10_v2_chr6_+_45060036_45060067	0.653099	UGUGCUU	ENSMUST00000114641.1|Cntnap2|ENSMUSG00000039419.10|contactin associated protein-like 2
mm10_v2_chr4_+_54947976_54948054	0.639087	UGUGCUU	ENSMUST00000098070.3|Zfp462|ENSMUSG00000060206.5|zinc finger protein 462
mm10_v2_chr10_-_110000219_110000219	0.633276	UGUGCUU	ENSMUST00000032719.7|Nav3|ENSMUSG00000020181.9|neuron navigator 3
mm10_v2_chr17_-_91092715_91092822	0.618732	UGUGCUU	ENSMUST00000160800.2|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000159778.1|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000160844.3|Nrxn1|ENSMUSG00000024109.12|neurexin I
mm10_v2_chr3_+_96181151_96181167	0.569353	UGUGCUU	ENSMUST00000035371.8|Sv2a|ENSMUSG00000038486.8|synaptic vesicle glycoprotein 2 a
mm10_v2_chr10_+_52690496_52690554	0.543147	UGUGCUU	ENSMUST00000105473.2|Slc35f1|ENSMUSG00000038602.7|solute carrier family 35, member F1
mm10_v2_chr14_+_118937925_118937992	0.537413	UGUGCUU	ENSMUST00000022734.7|Dnajc3|ENSMUSG00000022136.7|DnaJ (Hsp40) homolog, subfamily C, member 3
mm10_v2_chr12_-_75177325_75177359	0.528274	UGUGCUU	ENSMUST00000042299.2|Kcnh5|ENSMUSG00000034402.2|potassium voltage-gated channel, subfamily H (eag-related), member 5
mm10_v2_chr12_-_27342696_27342726	0.507726	UGUGCUU	ENSMUST00000079063.5|Sox11|ENSMUSG00000063632.5|SRY-box containing gene 11
mm10_v2_chr8_+_54954728_54954820	0.497848	UGUGCUU	ENSMUST00000033915.7|Gpm6a|ENSMUSG00000031517.7|glycoprotein m6a
mm10_v2_chr10_+_69212634_69212667	0.495941	UGUGCUU	ENSMUST00000020101.5|Rhobtb1|ENSMUSG00000019944.8|Rho-related BTB domain containing 1
mm10_v2_chr13_+_75089826_75089886	0.491631	UGUGCUU	ENSMUST00000022075.4|Pcsk1|ENSMUSG00000021587.4|proprotein convertase subtilisin/kexin type 1
mm10_v2_chr7_+_121392266_121392296	0.484223	UGUGCUU	ENSMUST00000084628.3|Hs3st2|ENSMUSG00000046321.7|heparan sulfate (glucosamine) 3-O-sulfotransferase 2
mm10_v2_chr17_-_87797994_87798049	0.467868	UGUGCUU	ENSMUST00000055221.7|Kcnk12|ENSMUSG00000050138.7|potassium channel, subfamily K, member 12
mm10_v2_chr2_+_92915080_92915115	0.451069	UGUGCUU	ENSMUST00000028648.2|Syt13|ENSMUSG00000027220.2|synaptotagmin XIII
mm10_v2_chr6_-_52012476_52012551	0.450275	UGUGCUU	ENSMUST00000078214.5|Skap2|ENSMUSG00000059182.5|src family associated phosphoprotein 2
mm10_v2_chr2_+_179442427_179442442	0.438647	UGUGCUU	ENSMUST00000000314.6|Cdh4|ENSMUSG00000000305.6|cadherin 4
mm10_v2_chr5_-_113015473_113015567	0.437897	UGUGCUU	ENSMUST00000065167.4|Adrbk2|ENSMUSG00000042249.7|adrenergic receptor kinase, beta 2
mm10_v2_chr3_-_117360876_117360876	0.427483	UGUGCUU	ENSMUST00000061071.8|D3Bwg0562e|ENSMUSG00000044667.8|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm10_v2_chr10_+_70097102_70097211	0.426536	UGUGCUU	ENSMUST00000147545.1|Ccdc6|ENSMUSG00000048701.7|coiled-coil domain containing 6
mm10_v2_chr2_+_54436317_54436422	0.424092	UGUGCUU	ENSMUST00000112636.1|Galnt13|ENSMUSG00000060988.6|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 	ENSMUST00000112635.1|Galnt13|ENSMUSG00000060988.6|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 	ENSMUST00000112634.1|Galnt13|ENSMUSG00000060988.6|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13
mm10_v2_chr12_+_71831064_71831178	0.411524	UGUGCUU	ENSMUST00000085299.2|Daam1|ENSMUSG00000034574.9|dishevelled associated activator of morphogenesis 1
mm10_v2_chr17_+_24488773_24488799	0.411245	UGUGCUU	ENSMUST00000024958.7|Caskin1|ENSMUSG00000033597.8|CASK interacting protein 1
mm10_v2_chr11_-_101967005_101967021	0.406305	UGUGCUU	ENSMUST00000001534.6|Sost|ENSMUSG00000001494.6|sclerostin
mm10_v2_chr1_-_127677923_127678096	0.405617	UGUGCUU	ENSMUST00000160616.1|Tmem163|ENSMUSG00000026347.7|transmembrane protein 163
mm10_v2_chr1_-_52952834_52952854	0.401669	UGUGCUU	ENSMUST00000050567.4|1700019D03Rik|ENSMUSG00000043629.6|RIKEN cDNA 1700019D03 gene
mm10_v2_chr1_-_83408190_83408222	0.401306	UGUGCUU	ENSMUST00000160953.1|Sphkap|ENSMUSG00000026163.11|SPHK1 interactor, AKAP domain containing
mm10_v2_chr8_-_90348343_90348386	0.397902	UGUGCUU	ENSMUST00000109621.3|Tox3|ENSMUSG00000043668.7|TOX high mobility group box family member 3
mm10_v2_chr12_+_52516077_52516077	0.395754	UGUGCUU	ENSMUST00000110725.1|Arhgap5|ENSMUSG00000035133.8|Rho GTPase activating protein 5
mm10_v2_chr14_+_30715599_30715641	0.39267	UGUGCUU	ENSMUST00000054230.4|Sfmbt1|ENSMUSG00000006527.8|Scm-like with four mbt domains 1
mm10_v2_chr3_-_58525867_58525873	0.387791	UGUGCUU	ENSMUST00000029385.7|Serp1|ENSMUSG00000027808.7|stress-associated endoplasmic reticulum protein 1
mm10_v2_chr10_-_105574435_105574451	0.386458	UGUGCUU	ENSMUST00000061506.8|Tmtc2|ENSMUSG00000036019.8|transmembrane and tetratricopeptide repeat containing 2
mm10_v2_chr1_+_165301863_165301863	0.374834	UGUGCUU	ENSMUST00000178700.1|Gpr161|ENSMUSG00000040836.9|G protein-coupled receptor 161
mm10_v2_chr2_-_162661075_162661147	0.374318	UGUGCUU	ENSMUST00000109442.1|Ptprt|ENSMUSG00000053141.10|protein tyrosine phosphatase, receptor type, T 	ENSMUST00000109445.2|Ptprt|ENSMUSG00000053141.10|protein tyrosine phosphatase, receptor type, T 	ENSMUST00000109443.1|Ptprt|ENSMUSG00000053141.10|protein tyrosine phosphatase, receptor type, T 	ENSMUST00000109441.1|Ptprt|ENSMUSG00000053141.10|protein tyrosine phosphatase, receptor type, T
mm10_v2_chr11_-_94474088_94474198	0.37103	UGUGCUU	ENSMUST00000107786.1|Cacna1g|ENSMUSG00000020866.11|calcium channel, voltage-dependent, T type, alpha 1G subunit 	ENSMUST00000107791.1|Cacna1g|ENSMUSG00000020866.11|calcium channel, voltage-dependent, T type, alpha 1G subunit 	ENSMUST00000103166.2|Cacna1g|ENSMUSG00000020866.11|calcium channel, voltage-dependent, T type, alpha 1G subunit 	ENSMUST00000107792.1|Cacna1g|ENSMUSG00000020866.11|calcium channel, voltage-dependent, T type, alpha 1G subunit 	ENSMUST00000100561.3|Cacna1g|ENSMUSG00000020866.11|calcium channel, voltage-dependent, T type, alpha 1G subunit 	ENSMUST00000107793.1|Cacna1g|ENSMUSG00000020866.11|calcium channel, voltage-dependent, T type, alpha 1G subunit 	ENSMUST00000107788.1|Cacna1g|ENSMUSG00000020866.11|calcium channel, voltage-dependent, T type, alpha 1G subunit 	ENSMUST00000107790.1|Cacna1g|ENSMUSG00000020866.11|calcium channel, voltage-dependent, T type, alpha 1G subunit 	ENSMUST00000107789.1|Cacna1g|ENSMUSG00000020866.11|calcium channel, voltage-dependent, T type, alpha 1G subunit 	ENSMUST00000107785.1|Cacna1g|ENSMUSG00000020866.11|calcium channel, voltage-dependent, T type, alpha 1G subunit 	ENSMUST00000021234.8|Cacna1g|ENSMUSG00000020866.11|calcium channel, voltage-dependent, T type, alpha 1G subunit
mm10_v2_chr15_+_30172570_30172600	0.370672	UGUGCUU	ENSMUST00000081728.5|Ctnnd2|ENSMUSG00000022240.9|catenin (cadherin associated protein), delta 2
mm10_v2_chr9_+_43744399_43744576	0.367961	UGUGCUU	ENSMUST00000034510.7|Pvrl1|ENSMUSG00000032012.7|poliovirus receptor-related 1
mm10_v2_chr8_+_61224162_61224174	0.365324	UGUGCUU	ENSMUST00000034060.5|Sh3rf1|ENSMUSG00000031642.8|SH3 domain containing ring finger 1
mm10_v2_chr11_-_66525964_66525964	0.357658	UGUGCUU	ENSMUST00000066679.6|Shisa6|ENSMUSG00000053930.7|shisa homolog 6 (Xenopus laevis)
mm10_v2_chr10_-_109010955_109010983	0.356071	UGUGCUU	ENSMUST00000105276.1|Syt1|ENSMUSG00000035864.8|synaptotagmin I 	ENSMUST00000064054.7|Syt1|ENSMUSG00000035864.8|synaptotagmin I
mm10_v2_chr3_-_107518001_107518023	0.354746	UGUGCUU	ENSMUST00000169449.1|Slc6a17|ENSMUSG00000027894.8|solute carrier family 6 (neurotransmitter transporter), member 17 	ENSMUST00000029499.8|Slc6a17|ENSMUSG00000027894.8|solute carrier family 6 (neurotransmitter transporter), member 17
mm10_v2_chr6_+_97807014_97807067	0.346763	UGUGCUU	ENSMUST00000043637.7|Mitf|ENSMUSG00000035158.9|microphthalmia-associated transcription factor
mm10_v2_chr18_-_44662251_44662266	0.345672	UGUGCUU	ENSMUST00000164666.1|Mcc|ENSMUSG00000071856.4|mutated in colorectal cancers
mm10_v2_chr1_+_60181495_60181591	0.343698	UGUGCUU	ENSMUST00000160834.1|Nbeal1|ENSMUSG00000073664.5|neurobeachin like 1
mm10_v2_chr15_-_84855093_84855127	0.342636	UGUGCUU	ENSMUST00000016768.5|Phf21b|ENSMUSG00000016624.9|PHD finger protein 21B
mm10_v2_chr13_-_52530827_52530841	0.341474	UGUGCUU	ENSMUST00000057442.6|Diras2|ENSMUSG00000047842.6|DIRAS family, GTP-binding RAS-like 2
mm10_v2_chr8_-_94012558_94012687	0.339342	UGUGCUU	ENSMUST00000053766.6|Amfr|ENSMUSG00000031751.7|autocrine motility factor receptor
mm10_v2_chr16_+_33062512_33062549	0.338551	UGUGCUU	ENSMUST00000023497.2|Lmln|ENSMUSG00000022802.2|leishmanolysin-like (metallopeptidase M8 family)
mm10_v2_chrX_+_159627265_159627298	0.33728	UGUGCUU	ENSMUST00000112456.2|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr17_-_67354459_67354485	0.336894	UGUGCUU	ENSMUST00000037974.8|Ptprm|ENSMUSG00000033278.9|protein tyrosine phosphatase, receptor type, M
mm10_v2_chr9_+_77917364_77917386	0.335223	UGUGCUU	ENSMUST00000034904.7|Elovl5|ENSMUSG00000032349.7|ELOVL family member 5, elongation of long chain fatty acids (yeast)
mm10_v2_chr15_-_58364148_58364148	0.334206	UGUGCUU	ENSMUST00000068515.7|Anxa13|ENSMUSG00000055114.7|annexin A13
mm10_v2_chr19_+_53529100_53529109	0.333532	UGUGCUU	ENSMUST00000038287.6|Dusp5|ENSMUSG00000034765.6|dual specificity phosphatase 5
mm10_v2_chr6_+_142387215_142387269	0.322164	UGUGCUU	ENSMUST00000032372.6|Golt1b|ENSMUSG00000030245.10|golgi transport 1 homolog B (S. cerevisiae)
mm10_v2_chr2_-_32847164_32847214	0.317715	UGUGCUU	ENSMUST00000077458.4|Stxbp1|ENSMUSG00000026797.9|syntaxin binding protein 1
mm10_v2_chr6_+_108783059_108783116	0.316509	UGUGCUU	ENSMUST00000032196.6|Arl8b|ENSMUSG00000030105.6|ADP-ribosylation factor-like 8B
mm10_v2_chr9_-_43105718_43105793	0.31217	UGUGCUU	ENSMUST00000165665.1|Arhgef12|ENSMUSG00000059495.7|Rho guanine nucleotide exchange factor (GEF) 12
mm10_v2_chr9_-_70657121_70657188	0.309895	UGUGCUU	ENSMUST00000049031.5|Fam63b|ENSMUSG00000042444.9|family with sequence similarity 63, member B
mm10_v2_chr9_-_123851855_123851912	0.308642	UGUGCUU	ENSMUST00000184082.1|Fyco1|ENSMUSG00000025241.9|FYVE and coiled-coil domain containing 1 	ENSMUST00000167595.2|Fyco1|ENSMUSG00000025241.9|FYVE and coiled-coil domain containing 1
mm10_v2_chr5_-_22344690_22344710	0.301846	UGUGCUU	ENSMUST00000062372.7|Reln|ENSMUSG00000042453.8|reelin 	ENSMUST00000161356.1|Reln|ENSMUSG00000042453.8|reelin
mm10_v2_chrX_+_23693043_23693131	0.301218	UGUGCUU	ENSMUST00000035766.6|Wdr44|ENSMUSG00000036769.8|WD repeat domain 44 	ENSMUST00000101670.2|Wdr44|ENSMUSG00000036769.8|WD repeat domain 44
mm10_v2_chr6_-_100287441_100287465	0.299266	UGUGCUU	ENSMUST00000101118.2|Rybp|ENSMUSG00000072872.2|RING1 and YY1 binding protein
mm10_v2_chr10_+_116018213_116018421	0.295173	UGUGCUU	ENSMUST00000063470.4|Ptprr|ENSMUSG00000020151.10|protein tyrosine phosphatase, receptor type, R
mm10_v2_chr13_-_37994111_37994190	0.288596	UGUGCUU	ENSMUST00000021864.6|Ssr1|ENSMUSG00000021427.9|signal sequence receptor, alpha
mm10_v2_chr3_+_41555723_41555745	0.288068	UGUGCUU	ENSMUST00000026865.8|Phf17|ENSMUSG00000025764.8|PHD finger protein 17
mm10_v2_chr3_+_96104498_96104571	0.285499	UGUGCUU	ENSMUST00000132980.1|Otud7b|ENSMUSG00000038495.8|OTU domain containing 7B 	ENSMUST00000138206.1|Otud7b|ENSMUSG00000038495.8|OTU domain containing 7B 	ENSMUST00000090785.2|Otud7b|ENSMUSG00000038495.8|OTU domain containing 7B 	ENSMUST00000035519.5|Otud7b|ENSMUSG00000038495.8|OTU domain containing 7B
mm10_v2_chr9_+_45117813_45117881	0.28224	UGUGCUU	ENSMUST00000170998.1|Scn2b|ENSMUSG00000070304.5|sodium channel, voltage-gated, type II, beta 	ENSMUST00000093855.3|Scn2b|ENSMUSG00000070304.5|sodium channel, voltage-gated, type II, beta
mm10_v2_chr13_-_14523178_14523226	0.279334	UGUGCUU	ENSMUST00000110516.2|Hecw1|ENSMUSG00000021301.8|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
mm10_v2_chr3_+_89520152_89520175	0.277584	UGUGCUU	ENSMUST00000000811.7|Kcnn3|ENSMUSG00000000794.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm10_v2_chr11_+_97799565_97799581	0.276162	UGUGCUU	ENSMUST00000043843.5|Lasp1|ENSMUSG00000038366.9|LIM and SH3 protein 1
mm10_v2_chr16_-_43979050_43979093	0.275851	UGUGCUU	ENSMUST00000165648.1|Zdhhc23|ENSMUSG00000036304.7|zinc finger, DHHC domain containing 23 	ENSMUST00000036321.7|Zdhhc23|ENSMUSG00000036304.7|zinc finger, DHHC domain containing 23
mm10_v2_chr2_+_106693185_106693278	0.275107	UGUGCUU	ENSMUST00000111063.1|Mpped2|ENSMUSG00000016386.9|metallophosphoesterase domain containing 2
mm10_v2_chr18_-_16809233_16809324	0.269805	UGUGCUU	ENSMUST00000025166.7|Cdh2|ENSMUSG00000024304.8|cadherin 2
mm10_v2_chr10_-_53379816_53379858	0.268945	UGUGCUU	ENSMUST00000095691.5|Cep85l|ENSMUSG00000038594.8|centrosomal protein 85-like
mm10_v2_chr15_-_53902472_53902530	0.265607	UGUGCUU	ENSMUST00000078673.6|Samd12|ENSMUSG00000058656.6|sterile alpha motif domain containing 12
mm10_v2_chr8_+_72161101_72161200	0.265179	UGUGCUU	ENSMUST00000003121.8|Rab8a|ENSMUSG00000003037.10|RAB8A, member RAS oncogene family
mm10_v2_chr13_-_101768154_101768217	0.263817	UGUGCUU	ENSMUST00000055518.6|Pik3r1|ENSMUSG00000041417.9|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm10_v2_chr1_-_156718989_156719021	0.262032	UGUGCUU	ENSMUST00000122424.1|Fam20b|ENSMUSG00000033557.11|family with sequence similarity 20, member B
mm10_v2_chr6_-_88518760_88518905	0.261936	UGUGCUU	ENSMUST00000032168.5|Sec61a1|ENSMUSG00000030082.8|Sec61 alpha 1 subunit (S. cerevisiae)
mm10_v2_chr7_-_116443439_116443462	0.259628	UGUGCUU	ENSMUST00000170430.1|Pik3c2a|ENSMUSG00000030660.8|phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide
mm10_v2_chr3_-_131344892_131344940	0.256802	UGUGCUU	ENSMUST00000090246.4|Sgms2|ENSMUSG00000050931.6|sphingomyelin synthase 2 	ENSMUST00000126569.1|Sgms2|ENSMUSG00000050931.6|sphingomyelin synthase 2
mm10_v2_chr2_+_4400958_4400975	0.25664	UGUGCUU	ENSMUST00000075767.7|Frmd4a|ENSMUSG00000026657.10|FERM domain containing 4A
mm10_v2_chr5_-_4104654_4104792	0.256471	UGUGCUU	ENSMUST00000001507.4|Cyp51|ENSMUSG00000001467.4|cytochrome P450, family 51
mm10_v2_chr3_+_114904062_114904142	0.255924	UGUGCUU	ENSMUST00000081752.6|Olfm3|ENSMUSG00000027965.9|olfactomedin 3
mm10_v2_chr9_+_45138437_45138462	0.255924	UGUGCUU	ENSMUST00000060125.5|Scn4b|ENSMUSG00000046480.5|sodium channel, type IV, beta
mm10_v2_chr5_+_130448801_130448830	0.252224	UGUGCUU	ENSMUST00000111288.2|Caln1|ENSMUSG00000060371.6|calneuron 1
mm10_v2_chr3_-_58692391_58692412	0.2512	UGUGCUU	ENSMUST00000070368.7|Siah2|ENSMUSG00000036432.8|seven in absentia 2
mm10_v2_chr16_+_72663143_72663189	0.250145	UGUGCUU	ENSMUST00000023600.7|Robo1|ENSMUSG00000022883.10|roundabout homolog 1 (Drosophila)
mm10_v2_chr4_-_129227883_129227923	0.249939	UGUGCUU	ENSMUST00000106051.1|C77080|ENSMUSG00000050390.6|expressed sequence C77080
mm10_v2_chr7_+_91090697_91090727	0.245975	UGUGCUU	ENSMUST00000107196.2|Dlg2|ENSMUSG00000052572.9|discs, large homolog 2 (Drosophila)
mm10_v2_chr4_-_70534904_70534987	0.243976	UGUGCUU	ENSMUST00000107359.2|Megf9|ENSMUSG00000039270.3|multiple EGF-like-domains 9
mm10_v2_chr4_-_111902754_111902918	0.241211	UGUGCUU	ENSMUST00000102719.1|Slc5a9|ENSMUSG00000028544.8|solute carrier family 5 (sodium/glucose cotransporter), member 9 	ENSMUST00000102721.1|Slc5a9|ENSMUSG00000028544.8|solute carrier family 5 (sodium/glucose cotransporter), member 9
mm10_v2_chr2_-_39190687_39190746	0.24089	UGUGCUU	ENSMUST00000142872.1|Scai|ENSMUSG00000035236.11|suppressor of cancer cell invasion 	ENSMUST00000038874.5|Scai|ENSMUSG00000035236.11|suppressor of cancer cell invasion
mm10_v2_chr9_-_58204310_58204327	0.238916	UGUGCUU	ENSMUST00000114144.2|Islr2|ENSMUSG00000051243.7|immunoglobulin superfamily containing leucine-rich repeat 2
mm10_v2_chr5_+_117133567_117133649	0.237646	UGUGCUU	ENSMUST00000179276.1|Taok3|ENSMUSG00000061288.7|TAO kinase 3 	ENSMUST00000092889.5|Taok3|ENSMUSG00000061288.7|TAO kinase 3 	ENSMUST00000145640.1|Taok3|ENSMUSG00000061288.7|TAO kinase 3
mm10_v2_chr8_-_25201349_25201459	0.236381	UGUGCUU	ENSMUST00000084512.4|Tacc1|ENSMUSG00000065954.4|transforming, acidic coiled-coil containing protein 1 	ENSMUST00000084030.4|Tacc1|ENSMUSG00000065954.4|transforming, acidic coiled-coil containing protein 1
mm10_v2_chr3_+_59006978_59006978	0.235051	UGUGCUU	ENSMUST00000040325.7|Med12l|ENSMUSG00000056476.7|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like 	ENSMUST00000164225.1|Med12l|ENSMUSG00000056476.7|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like 	ENSMUST00000040846.8|Med12l|ENSMUSG00000056476.7|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like 	ENSMUST00000029393.8|Med12l|ENSMUSG00000056476.7|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like
mm10_v2_chr13_-_24280716_24280795	0.234744	UGUGCUU	ENSMUST00000110398.2|Lrrc16a|ENSMUSG00000021338.11|leucine rich repeat containing 16A 	ENSMUST00000072889.5|Lrrc16a|ENSMUSG00000021338.11|leucine rich repeat containing 16A
mm10_v2_chrX_+_13071500_13071576	0.230651	UGUGCUU	ENSMUST00000089302.4|Usp9x|ENSMUSG00000031010.11|ubiquitin specific peptidase 9, X chromosome
mm10_v2_chr17_-_29888570_29888629	0.230276	UGUGCUU	ENSMUST00000171691.1|Mdga1|ENSMUSG00000043557.9|MAM domain containing glycosylphosphatidylinositol anchor 1
mm10_v2_chr5_+_125532377_125532393	0.226604	UGUGCUU	ENSMUST00000031446.6|Tmem132b|ENSMUSG00000070498.3|transmembrane protein 132B
mm10_v2_chr5_+_88720855_88720876	0.225556	UGUGCUU	ENSMUST00000113229.1|Mob1b|ENSMUSG00000006262.9|MOB kinase activator 1B 	ENSMUST00000006424.7|Mob1b|ENSMUSG00000006262.9|MOB kinase activator 1B
mm10_v2_chr14_+_59201209_59201267	0.225412	UGUGCUU	ENSMUST00000173547.1|Rcbtb1|ENSMUSG00000035469.11|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 	ENSMUST00000043227.6|Rcbtb1|ENSMUSG00000035469.11|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 	ENSMUST00000022551.7|Rcbtb1|ENSMUSG00000035469.11|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
mm10_v2_chr2_+_152081529_152081624	0.22521	UGUGCUU	ENSMUST00000064061.3|Scrt2|ENSMUSG00000060257.2|scratch homolog 2, zinc finger protein (Drosophila)
mm10_v2_chr2_+_155381808_155381884	0.223912	UGUGCUU	ENSMUST00000043237.7|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2 	ENSMUST00000174685.1|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2
mm10_v2_chr9_-_107635330_107635353	0.222703	UGUGCUU	ENSMUST00000055704.6|Gnai2|ENSMUSG00000032562.8|guanine nucleotide binding protein (G protein), alpha inhibiting 2
mm10_v2_chr7_+_100607410_100607618	0.221815	UGUGCUU	ENSMUST00000107048.1|Rab6a|ENSMUSG00000030704.8|RAB6A, member RAS oncogene family 	ENSMUST00000032946.3|Rab6a|ENSMUSG00000030704.8|RAB6A, member RAS oncogene family
mm10_v2_chr1_+_23761926_23761999	0.2196	UGUGCUU	ENSMUST00000063663.5|B3gat2|ENSMUSG00000026156.8|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
mm10_v2_chr9_-_25151772_25151840	0.217981	UGUGCUU	ENSMUST00000008573.7|Herpud2|ENSMUSG00000008429.7|HERPUD family member 2
mm10_v2_chr1_-_9299238_9299306	0.2154	UGUGCUU	ENSMUST00000140295.1|Sntg1|ENSMUSG00000025909.10|syntrophin, gamma 1
mm10_v2_chr11_-_86993682_86993707	0.212338	UGUGCUU	ENSMUST00000018571.4|Ypel2|ENSMUSG00000018427.7|yippee-like 2 (Drosophila)
mm10_v2_chr17_+_74528279_74528295	0.211934	UGUGCUU	ENSMUST00000180037.1|Birc6|ENSMUSG00000024073.8|baculoviral IAP repeat-containing 6 	ENSMUST00000024879.6|Birc6|ENSMUSG00000024073.8|baculoviral IAP repeat-containing 6
mm10_v2_chr1_+_89070406_89070421	0.211164	UGUGCUU	ENSMUST00000066279.4|Sh3bp4|ENSMUSG00000036206.6|SH3-domain binding protein 4
mm10_v2_chr8_+_106935720_106935776	0.210869	UGUGCUU	ENSMUST00000047425.3|Sntb2|ENSMUSG00000041308.5|syntrophin, basic 2
mm10_v2_chr16_+_33251415_33251456	0.210407	UGUGCUU	ENSMUST00000023502.4|Snx4|ENSMUSG00000022808.4|sorting nexin 4
mm10_v2_chr7_-_127824469_127824580	0.208691	UGUGCUU	ENSMUST00000106267.3|Stx1b|ENSMUSG00000030806.5|syntaxin 1B
mm10_v2_chr3_+_138742195_138742322	0.202466	UGUGCUU	ENSMUST00000029800.2|Tspan5|ENSMUSG00000028152.4|tetraspanin 5
mm10_v2_chr2_+_49787675_49787695	0.2021	UGUGCUU	ENSMUST00000028103.6|Lypd6b|ENSMUSG00000026765.6|LY6/PLAUR domain containing 6B
mm10_v2_chr4_-_22488296_22488366	0.201659	UGUGCUU	ENSMUST00000178174.1|Pou3f2|ENSMUSG00000095139.1|POU domain, class 3, transcription factor 2
mm10_v2_chr10_-_114801364_114801364	0.20135	UGUGCUU	ENSMUST00000061632.7|Trhde|ENSMUSG00000050663.7|TRH-degrading enzyme
mm10_v2_chrX_+_140664908_140665072	0.198303	UGUGCUU	ENSMUST00000112990.1|Mid2|ENSMUSG00000000266.5|midline 2 	ENSMUST00000112988.1|Mid2|ENSMUSG00000000266.5|midline 2
mm10_v2_chr9_-_66919646_66919710	0.197549	UGUGCUU	ENSMUST00000041139.7|Rab8b|ENSMUSG00000036943.8|RAB8B, member RAS oncogene family
mm10_v2_chr5_+_19907502_19907551	0.196879	UGUGCUU	ENSMUST00000101558.3|Magi2|ENSMUSG00000040003.11|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm10_v2_chr11_-_96824008_96824159	0.196344	UGUGCUU	ENSMUST00000142065.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000167110.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000169828.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000126949.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1
mm10_v2_chr8_+_62951361_62951498	0.196225	UGUGCUU	ENSMUST00000119068.1|Spock3|ENSMUSG00000054162.9|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3
mm10_v2_chr7_-_132599637_132599637	0.195974	UGUGCUU	ENSMUST00000054562.3|Nkx1-2|ENSMUSG00000048528.7|NK1 transcription factor related, locus 2 (Drosophila)
mm10_v2_chr2_+_28840406_28840462	0.194472	UGUGCUU	ENSMUST00000113853.2|Ddx31|ENSMUSG00000026806.9|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31
mm10_v2_chr16_-_74411292_74411430	0.193548	UGUGCUU	ENSMUST00000117200.1|Robo2|ENSMUSG00000052516.11|roundabout homolog 2 (Drosophila)
mm10_v2_chr4_+_57434247_57434368	0.191191	UGUGCUU	ENSMUST00000102905.1|Palm2|ENSMUSG00000090053.3|paralemmin 2
mm10_v2_chr9_+_59578192_59578337	0.190639	UGUGCUU	ENSMUST00000118549.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6 	ENSMUST00000034840.3|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6
mm10_v2_chr4_+_95967205_95967320	0.187678	UGUGCUU	ENSMUST00000030306.7|Hook1|ENSMUSG00000028572.7|hook homolog 1 (Drosophila)
mm10_v2_chr1_+_167001417_167001431	0.187105	UGUGCUU	ENSMUST00000165874.1|Fam78b|ENSMUSG00000060568.8|family with sequence similarity 78, member B
mm10_v2_chr1_-_56972437_56972502	0.186079	UGUGCUU	ENSMUST00000042857.7|Satb2|ENSMUSG00000038331.9|special AT-rich sequence binding protein 2
mm10_v2_chr1_-_193035651_193035728	0.185997	UGUGCUU	ENSMUST00000016344.7|Syt14|ENSMUSG00000016200.8|synaptotagmin XIV
mm10_v2_chr3_-_125938537_125938605	0.183108	UGUGCUU	ENSMUST00000057944.7|Ugt8a|ENSMUSG00000032854.8|UDP galactosyltransferase 8A
mm10_v2_chr13_+_96542727_96542775	0.182274	UGUGCUU	ENSMUST00000077672.4|Col4a3bp|ENSMUSG00000021669.8|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein 	ENSMUST00000109444.2|Col4a3bp|ENSMUSG00000021669.8|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein
mm10_v2_chr11_-_85139939_85140038	0.17665	UGUGCUU	ENSMUST00000108075.2|Usp32|ENSMUSG00000000804.8|ubiquitin specific peptidase 32
mm10_v2_chr12_-_87200200_87200284	0.17571	UGUGCUU	ENSMUST00000037418.5|Tmed8|ENSMUSG00000034111.5|transmembrane emp24 domain containing 8
mm10_v2_chr12_+_35047180_35047230	0.175567	UGUGCUU	ENSMUST00000048519.9|Snx13|ENSMUSG00000020590.9|sorting nexin 13 	ENSMUST00000163677.1|Snx13|ENSMUSG00000020590.9|sorting nexin 13
mm10_v2_chr17_-_25240112_25240158	0.175161	UGUGCUU	ENSMUST00000038973.6|Gnptg|ENSMUSG00000035521.7|N-acetylglucosamine-1-phosphotransferase, gamma subunit 	ENSMUST00000115154.4|Gnptg|ENSMUSG00000035521.7|N-acetylglucosamine-1-phosphotransferase, gamma subunit
mm10_v2_chr1_-_176275274_176275308	0.17089	UGUGCUU	ENSMUST00000111166.1|Pld5|ENSMUSG00000055214.9|phospholipase D family, member 5 	ENSMUST00000065967.7|Pld5|ENSMUSG00000055214.9|phospholipase D family, member 5
mm10_v2_chr1_-_191397026_191397041	0.169797	UGUGCUU	ENSMUST00000067976.3|Ppp2r5a|ENSMUSG00000026626.6|protein phosphatase 2, regulatory subunit B (B56), alpha isoform
mm10_v2_chr9_-_89622986_89622986	0.169772	UGUGCUU	ENSMUST00000044491.6|AF529169|ENSMUSG00000039313.8|cDNA sequence AF529169
mm10_v2_chr15_-_103239812_103239888	0.16949	UGUGCUU	ENSMUST00000118152.1|Cbx5|ENSMUSG00000009575.8|chromobox 5
mm10_v2_chr12_+_76533540_76533597	0.168275	UGUGCUU	ENSMUST00000075249.4|Plekhg3|ENSMUSG00000052609.8|pleckstrin homology domain containing, family G (with RhoGef domain) member 3
mm10_v2_chr12_-_80260356_80260371	0.163219	UGUGCUU	ENSMUST00000021554.8|Actn1|ENSMUSG00000015143.8|actinin, alpha 1
mm10_v2_chr3_+_75557530_75557561	0.162914	UGUGCUU	ENSMUST00000161776.1|Serpini1|ENSMUSG00000027834.9|serine (or cysteine) peptidase inhibitor, clade I, member 1 	ENSMUST00000029423.8|Serpini1|ENSMUSG00000027834.9|serine (or cysteine) peptidase inhibitor, clade I, member 1
mm10_v2_chr3_-_9833653_9833679	0.158279	UGUGCUU	ENSMUST00000161949.1|Pag1|ENSMUSG00000027508.9|phosphoprotein associated with glycosphingolipid microdomains 1
mm10_v2_chr1_-_58586191_58586323	0.157735	UGUGCUU	ENSMUST00000038372.7|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B 	ENSMUST00000097724.3|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B 	ENSMUST00000161000.1|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B 	ENSMUST00000161600.1|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B
mm10_v2_chr7_-_90457167_90457229	0.155991	UGUGCUU	ENSMUST00000032844.5|Tmem126a|ENSMUSG00000030615.5|transmembrane protein 126A
mm10_v2_chr4_+_42916647_42916712	0.155316	UGUGCUU	ENSMUST00000132173.1|N28178|ENSMUSG00000036062.7|expressed sequence N28178 	ENSMUST00000107975.1|N28178|ENSMUSG00000036062.7|expressed sequence N28178
mm10_v2_chr9_-_44234014_44234046	0.154838	UGUGCUU	ENSMUST00000037644.6|Cbl|ENSMUSG00000034342.8|Casitas B-lineage lymphoma
mm10_v2_chr3_+_51483966_51483999	0.153913	UGUGCUU	ENSMUST00000054387.6|Rab33b|ENSMUSG00000027739.8|RAB33B, member of RAS oncogene family
mm10_v2_chr10_-_40142247_40142260	0.151031	UGUGCUU	ENSMUST00000092566.6|Slc16a10|ENSMUSG00000019838.10|solute carrier family 16 (monocarboxylic acid transporters), member 10
mm10_v2_chr12_+_8674129_8674150	0.150784	UGUGCUU	ENSMUST00000111123.2|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000178015.1|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000020915.3|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila)
mm10_v2_chr14_-_100149764_100149764	0.149433	UGUGCUU	ENSMUST00000097079.4|Klf12|ENSMUSG00000072294.4|Kruppel-like factor 12
mm10_v2_chr16_+_24393350_24393428	0.148522	UGUGCUU	ENSMUST00000038053.6|Lpp|ENSMUSG00000033306.8|LIM domain containing preferred translocation partner in lipoma
mm10_v2_chr14_+_67716095_67716151	0.148045	UGUGCUU	ENSMUST00000078053.6|Kctd9|ENSMUSG00000034327.11|potassium channel tetramerisation domain containing 9 	ENSMUST00000145542.1|Kctd9|ENSMUSG00000034327.11|potassium channel tetramerisation domain containing 9 	ENSMUST00000125212.1|Kctd9|ENSMUSG00000034327.11|potassium channel tetramerisation domain containing 9
mm10_v2_chr13_-_103334429_103334500	0.146509	UGUGCUU	ENSMUST00000167058.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4 	ENSMUST00000164111.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr8_+_10272572_10272572	0.14637	UGUGCUU	ENSMUST00000042103.8|Myo16|ENSMUSG00000039057.9|myosin XVI
mm10_v2_chr1_+_191906743_191906767	0.14496	UGUGCUU	ENSMUST00000044954.6|Slc30a1|ENSMUSG00000037434.7|solute carrier family 30 (zinc transporter), member 1
mm10_v2_chr5_+_76974683_76974727	0.144696	UGUGCUU	ENSMUST00000101087.3|Srp72|ENSMUSG00000036323.8|signal recognition particle 72 	ENSMUST00000120550.1|Srp72|ENSMUSG00000036323.8|signal recognition particle 72
mm10_v2_chr2_+_109917639_109917656	0.14402	UGUGCUU	ENSMUST00000046548.7|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4 	ENSMUST00000111037.2|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4
mm10_v2_chr2_-_167062981_167063048	0.143986	UGUGCUU	ENSMUST00000048988.7|Znfx1|ENSMUSG00000039501.8|zinc finger, NFX1-type containing 1
mm10_v2_chr6_+_91684061_91684132	0.143354	UGUGCUU	ENSMUST00000032185.7|Slc6a6|ENSMUSG00000030096.7|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
mm10_v2_chr5_-_38684743_38684826	0.142845	UGUGCUU	ENSMUST00000057258.4|Zfp518b|ENSMUSG00000046572.4|zinc finger protein 518B 	ENSMUST00000178760.1|Zfp518b|ENSMUSG00000046572.4|zinc finger protein 518B 	ENSMUST00000179555.1|Zfp518b|ENSMUSG00000046572.4|zinc finger protein 518B 	ENSMUST00000180214.1|Zfp518b|ENSMUSG00000046572.4|zinc finger protein 518B
mm10_v2_chr14_-_48665098_48665246	0.138342	UGUGCUU	ENSMUST00000118578.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila)
mm10_v2_chr12_+_108792946_108792988	0.138175	UGUGCUU	ENSMUST00000021692.7|Yy1|ENSMUSG00000021264.11|YY1 transcription factor
mm10_v2_chr10_+_80264942_80265033	0.1378	UGUGCUU	ENSMUST00000105362.1|Dazap1|ENSMUSG00000069565.6|DAZ associated protein 1 	ENSMUST00000105361.3|Dazap1|ENSMUSG00000069565.6|DAZ associated protein 1
mm10_v2_chr15_-_96460838_96460856	0.136143	UGUGCUU	ENSMUST00000047835.6|Scaf11|ENSMUSG00000033228.7|SR-related CTD-associated factor 11
mm10_v2_chr11_-_54787597_54787711	0.135505	UGUGCUU	ENSMUST00000153209.1|Cdc42se2|ENSMUSG00000052298.6|CDC42 small effector 2 	ENSMUST00000064104.6|Cdc42se2|ENSMUSG00000052298.6|CDC42 small effector 2
mm10_v2_chr5_-_128953303_128953362	0.134611	UGUGCUU	ENSMUST00000111346.1|Rimbp2|ENSMUSG00000029420.8|RIMS binding protein 2
mm10_v2_chr3_+_132085281_132085299	0.133973	UGUGCUU	ENSMUST00000029665.5|Dkk2|ENSMUSG00000028031.5|dickkopf homolog 2 (Xenopus laevis)
mm10_v2_chr8_+_106059562_106059623	0.133119	UGUGCUU	ENSMUST00000109308.1|Nfatc3|ENSMUSG00000031902.9|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3
mm10_v2_chr7_-_99626936_99627103	0.133002	UGUGCUU	ENSMUST00000178124.1|Gm4980|ENSMUSG00000096606.1|predicted gene 4980
mm10_v2_chr2_-_52742169_52742281	0.132397	UGUGCUU	ENSMUST00000102759.1|Stam2|ENSMUSG00000055371.11|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 	ENSMUST00000127316.1|Stam2|ENSMUSG00000055371.11|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2
mm10_v2_chr2_+_71211706_71211794	0.130007	UGUGCUU	ENSMUST00000112142.1|Dync1i2|ENSMUSG00000027012.9|dynein cytoplasmic 1 intermediate chain 2 	ENSMUST00000112139.1|Dync1i2|ENSMUSG00000027012.9|dynein cytoplasmic 1 intermediate chain 2 	ENSMUST00000112140.1|Dync1i2|ENSMUSG00000027012.9|dynein cytoplasmic 1 intermediate chain 2 	ENSMUST00000112138.1|Dync1i2|ENSMUSG00000027012.9|dynein cytoplasmic 1 intermediate chain 2
mm10_v2_chr5_+_72914264_72914304	0.129737	UGUGCUU	ENSMUST00000144843.1|Slain2|ENSMUSG00000036087.12|SLAIN motif family, member 2
mm10_v2_chr8_-_123515333_123515437	0.127706	UGUGCUU	ENSMUST00000177240.1|Dbndd1|ENSMUSG00000031970.10|dysbindin (dystrobrevin binding protein 1) domain containing 1
mm10_v2_chr11_+_19924354_19924375	0.126028	UGUGCUU	ENSMUST00000093299.6|Spred2|ENSMUSG00000045671.11|sprouty-related, EVH1 domain containing 2
mm10_v2_chr9_-_104262900_104262949	0.125231	UGUGCUU	ENSMUST00000035170.6|Dnajc13|ENSMUSG00000032560.7|DnaJ (Hsp40) homolog, subfamily C, member 13
mm10_v2_chr2_-_130840091_130840150	0.124527	UGUGCUU	ENSMUST00000044766.8|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene 	ENSMUST00000138990.1|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene 	ENSMUST00000120316.1|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene 	ENSMUST00000110243.1|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene
mm10_v2_chrX_+_71962971_71963013	0.123444	UGUGCUU	ENSMUST00000048790.6|Prrg3|ENSMUSG00000033361.7|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
mm10_v2_chr11_-_51857624_51857686	0.122421	UGUGCUU	ENSMUST00000020655.7|Phf15|ENSMUSG00000020387.9|PHD finger protein 15 	ENSMUST00000109090.1|Phf15|ENSMUSG00000020387.9|PHD finger protein 15
mm10_v2_chr8_+_23669653_23669671	0.122224	UGUGCUU	ENSMUST00000042352.4|Zmat4|ENSMUSG00000037492.9|zinc finger, matrin type 4
mm10_v2_chr4_-_25800083_25800146	0.121586	UGUGCUU	ENSMUST00000084770.4|Fut9|ENSMUSG00000055373.8|fucosyltransferase 9
mm10_v2_chr10_+_75212065_75212150	0.121425	UGUGCUU	ENSMUST00000105421.2|Specc1l|ENSMUSG00000033444.7|sperm antigen with calponin homology and coiled-coil domains 1-like
mm10_v2_chr18_-_58209926_58210067	0.12105	UGUGCUU	ENSMUST00000025497.6|Fbn2|ENSMUSG00000024598.8|fibrillin 2
mm10_v2_chr17_+_68273797_68273797	0.120527	UGUGCUU	ENSMUST00000124543.1|L3mbtl4|ENSMUSG00000041565.10|l(3)mbt-like 4 (Drosophila) 	ENSMUST00000093007.4|L3mbtl4|ENSMUSG00000041565.10|l(3)mbt-like 4 (Drosophila)
mm10_v2_chr12_-_80760541_80760730	0.120336	UGUGCUU	ENSMUST00000073251.6|Ccdc177|ENSMUSG00000062961.6|coiled-coil domain containing 177
mm10_v2_chrX_+_159255782_159255899	0.120119	UGUGCUU	ENSMUST00000126686.1|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3 	ENSMUST00000033671.6|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3
mm10_v2_chr9_-_121704996_121705041	0.119745	UGUGCUU	ENSMUST00000078547.4|Sec22c|ENSMUSG00000061536.6|SEC22 vesicle trafficking protein homolog C (S. cerevisiae)
mm10_v2_chr2_-_52676571_52676588	0.118961	UGUGCUU	ENSMUST00000178799.1|Cacnb4|ENSMUSG00000017412.9|calcium channel, voltage-dependent, beta 4 subunit
mm10_v2_chr19_+_38836561_38836612	0.118255	UGUGCUU	ENSMUST00000037302.5|Tbc1d12|ENSMUSG00000048720.7|TBC1D12: TBC1 domain family, member 12
mm10_v2_chr7_+_99535439_99535498	0.118073	UGUGCUU	ENSMUST00000098266.2|Arrb1|ENSMUSG00000018909.9|arrestin, beta 1 	ENSMUST00000179755.1|Arrb1|ENSMUSG00000018909.9|arrestin, beta 1
mm10_v2_chr5_+_64803513_64803530	0.117426	UGUGCUU	ENSMUST00000165536.1|Klf3|ENSMUSG00000029178.8|Kruppel-like factor 3 (basic)
mm10_v2_chrX_-_13846508_13846591	0.116028	UGUGCUU	ENSMUST00000115436.2|Cask|ENSMUSG00000031012.11|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENSMUST00000033321.4|Cask|ENSMUSG00000031012.11|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENSMUST00000115438.3|Cask|ENSMUSG00000031012.11|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
mm10_v2_chr2_-_26092149_26092177	0.115697	UGUGCUU	ENSMUST00000114159.2|Nacc2|ENSMUSG00000026932.8|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm10_v2_chr14_-_122465677_122465677	0.115347	UGUGCUU	ENSMUST00000039118.6|Zic5|ENSMUSG00000041703.7|zinc finger protein of the cerebellum 5
mm10_v2_chr1_+_115684727_115684756	0.114728	UGUGCUU	ENSMUST00000043725.7|Cntnap5a|ENSMUSG00000070695.3|contactin associated protein-like 5A
mm10_v2_chr13_-_24831409_24831518	0.114664	UGUGCUU	ENSMUST00000006900.6|Acot13|ENSMUSG00000006717.6|acyl-CoA thioesterase 13
mm10_v2_chr3_+_28781305_28781344	0.114598	UGUGCUU	ENSMUST00000060500.7|Eif5a2|ENSMUSG00000050192.7|eukaryotic translation initiation factor 5A2
mm10_v2_chr16_-_21694570_21694665	0.114558	UGUGCUU	ENSMUST00000053336.7|2510009E07Rik|ENSMUSG00000043391.9|RIKEN cDNA 2510009E07 gene
mm10_v2_chr14_-_49066653_49066674	0.114128	UGUGCUU	ENSMUST00000162175.1|Exoc5|ENSMUSG00000061244.7|exocyst complex component 5
mm10_v2_chr7_-_44929410_44929521	0.113752	UGUGCUU	ENSMUST00000107857.3|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000085399.6|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000167930.1|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000166972.1|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit
mm10_v2_chr4_+_125490688_125490704	0.112992	UGUGCUU	ENSMUST00000030676.7|Grik3|ENSMUSG00000001985.9|glutamate receptor, ionotropic, kainate 3
mm10_v2_chr11_-_71019233_71019303	0.112316	UGUGCUU	ENSMUST00000108523.3|Derl2|ENSMUSG00000018442.7|Der1-like domain family, member 2 	ENSMUST00000143850.1|Derl2|ENSMUSG00000018442.7|Der1-like domain family, member 2
mm10_v2_chr6_-_13677930_13677974	0.109708	UGUGCUU	ENSMUST00000045235.5|B630005N14Rik|ENSMUSG00000042742.5|RIKEN cDNA B630005N14 gene
mm10_v2_chr4_-_123750236_123750345	0.109571	UGUGCUU	ENSMUST00000102636.3|Akirin1|ENSMUSG00000023075.9|akirin 1
mm10_v2_chr13_+_14063776_14063822	0.108585	UGUGCUU	ENSMUST00000129488.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110536.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110534.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000039538.8|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110533.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like)
mm10_v2_chr15_-_28025834_28025879	0.108089	UGUGCUU	ENSMUST00000090247.5|Trio|ENSMUSG00000022263.9|triple functional domain (PTPRF interacting)
mm10_v2_chr6_+_38433913_38433965	0.108061	UGUGCUU	ENSMUST00000160583.1|Ubn2|ENSMUSG00000038538.11|ubinuclein 2
mm10_v2_chr18_+_35771488_35771559	0.107247	UGUGCUU	ENSMUST00000170693.1|Ube2d2a|ENSMUSG00000091896.1|ubiquitin-conjugating enzyme E2D 2A
mm10_v2_chrX_+_75416628_75416649	0.107098	UGUGCUU	ENSMUST00000033544.7|Brcc3|ENSMUSG00000031201.11|BRCA1/BRCA2-containing complex, subunit 3
mm10_v2_chr6_+_149408973_149409038	0.10653	UGUGCUU	ENSMUST00000086829.4|Bicd1|ENSMUSG00000003452.9|bicaudal D homolog 1 (Drosophila) 	ENSMUST00000111513.2|Bicd1|ENSMUSG00000003452.9|bicaudal D homolog 1 (Drosophila)
mm10_v2_chr4_-_3938354_3938401	0.105544	UGUGCUU	ENSMUST00000003369.3|Plag1|ENSMUSG00000003282.3|pleiomorphic adenoma gene 1
mm10_v2_chr3_-_158562199_158562290	0.105381	UGUGCUU	ENSMUST00000106044.1|Lrrc7|ENSMUSG00000028176.7|leucine rich repeat containing 7
mm10_v2_chr11_+_54303798_54303844	0.105263	UGUGCUU	ENSMUST00000093106.5|Acsl6|ENSMUSG00000020333.11|acyl-CoA synthetase long-chain family member 6
mm10_v2_chr15_-_76521902_76522129	0.105176	UGUGCUU	ENSMUST00000164703.1|Scrt1|ENSMUSG00000048385.8|scratch homolog 1, zinc finger protein (Drosophila) 	ENSMUST00000096365.3|Scrt1|ENSMUSG00000048385.8|scratch homolog 1, zinc finger protein (Drosophila)
mm10_v2_chr11_-_106788486_106788532	0.10386	UGUGCUU	ENSMUST00000021062.5|Ddx5|ENSMUSG00000020719.8|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm10_v2_chr8_+_35587780_35587825	0.102554	UGUGCUU	ENSMUST00000037666.5|Mfhas1|ENSMUSG00000070056.5|malignant fibrous histiocytoma amplified sequence 1
mm10_v2_chr9_-_66834648_66834726	0.101988	UGUGCUU	ENSMUST00000057261.8|Aph1c|ENSMUSG00000053040.7|anterior pharynx defective 1c homolog (C. elegans) 	ENSMUST00000169282.1|Aph1c|ENSMUSG00000053040.7|anterior pharynx defective 1c homolog (C. elegans)
mm10_v2_chr11_+_7063423_7063496	0.10112	UGUGCUU	ENSMUST00000020706.4|Adcy1|ENSMUSG00000020431.5|adenylate cyclase 1
mm10_v2_chr9_-_77544870_77544914	0.0999658	UGUGCUU	ENSMUST00000183873.1|Lrrc1|ENSMUSG00000032352.9|leucine rich repeat containing 1
mm10_v2_chr3_+_60501252_60501275	0.0997884	UGUGCUU	ENSMUST00000099087.2|Mbnl1|ENSMUSG00000027763.8|muscleblind-like 1 (Drosophila)
mm10_v2_chr1_+_89454769_89454885	0.0997285	UGUGCUU	ENSMUST00000027521.8|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 	ENSMUST00000074945.5|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm10_v2_chr3_-_97227364_97227421	0.0986141	UGUGCUU	ENSMUST00000046521.7|Bcl9|ENSMUSG00000038256.9|B cell CLL/lymphoma 9
mm10_v2_chrX_-_103981242_103981287	0.0983001	UGUGCUU	ENSMUST00000121153.1|Rlim|ENSMUSG00000056537.5|ring finger protein, LIM domain interacting 	ENSMUST00000070705.4|Rlim|ENSMUSG00000056537.5|ring finger protein, LIM domain interacting
mm10_v2_chr2_+_28447941_28447941	0.0970771	UGUGCUU	ENSMUST00000040324.7|Ppp1r26|ENSMUSG00000035829.7|protein phosphatase 1, regulatory subunit 26
mm10_v2_chr12_+_3807017_3807063	0.0962268	UGUGCUU	ENSMUST00000020991.8|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A 	ENSMUST00000172509.1|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A
mm10_v2_chr5_-_38561658_38561680	0.0956147	UGUGCUU	ENSMUST00000005234.9|Wdr1|ENSMUSG00000005103.9|WD repeat domain 1
mm10_v2_chr2_+_130450259_130450309	0.0946359	UGUGCUU	ENSMUST00000028769.6|Ptpra|ENSMUSG00000027303.11|protein tyrosine phosphatase, receptor type, A
mm10_v2_chr19_-_58794436_58794461	0.0939373	UGUGCUU	ENSMUST00000028299.4|1700019N19Rik|ENSMUSG00000026931.4|RIKEN cDNA 1700019N19 gene
mm10_v2_chr3_-_65392579_65392623	0.0936674	UGUGCUU	ENSMUST00000029414.5|Ssr3|ENSMUSG00000027828.6|signal sequence receptor, gamma
mm10_v2_chr12_+_84451485_84451518	0.0933705	UGUGCUU	ENSMUST00000137170.1|Lin52|ENSMUSG00000085793.1|lin-52 homolog (C. elegans)
mm10_v2_chr11_-_20831009_20831056	0.0920118	UGUGCUU	ENSMUST00000047028.8|Lgalsl|ENSMUSG00000042363.8|lectin, galactoside binding-like
mm10_v2_chr8_+_33599608_33599655	0.0905817	UGUGCUU	ENSMUST00000009774.9|Ppp2cb|ENSMUSG00000009630.9|protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform
mm10_v2_chr14_-_65098031_65098106	0.0900178	UGUGCUU	ENSMUST00000022550.7|Extl3|ENSMUSG00000021978.8|exostoses (multiple)-like 3
mm10_v2_chr6_+_87042838_87042918	0.0894881	UGUGCUU	ENSMUST00000113658.1|Gfpt1|ENSMUSG00000029992.8|glutamine fructose-6-phosphate transaminase 1 	ENSMUST00000113657.1|Gfpt1|ENSMUSG00000029992.8|glutamine fructose-6-phosphate transaminase 1 	ENSMUST00000113655.1|Gfpt1|ENSMUSG00000029992.8|glutamine fructose-6-phosphate transaminase 1 	ENSMUST00000032057.7|Gfpt1|ENSMUSG00000029992.8|glutamine fructose-6-phosphate transaminase 1
mm10_v2_chr1_+_136131382_136131404	0.0893638	UGUGCUU	ENSMUST00000075164.4|Kif21b|ENSMUSG00000041642.12|kinesin family member 21B
mm10_v2_chr17_+_50509518_50509553	0.0891131	UGUGCUU	ENSMUST00000043938.6|Plcl2|ENSMUSG00000038910.6|phospholipase C-like 2
mm10_v2_chr4_+_21776261_21776297	0.0887933	UGUGCUU	ENSMUST00000065111.8|Usp45|ENSMUSG00000040455.11|ubiquitin specific petidase 45 	ENSMUST00000040429.5|Usp45|ENSMUSG00000040455.11|ubiquitin specific petidase 45 	ENSMUST00000148304.1|Usp45|ENSMUSG00000040455.11|ubiquitin specific petidase 45
mm10_v2_chr12_+_69372112_69372172	0.0884696	UGUGCUU	ENSMUST00000050063.7|Arf6|ENSMUSG00000044147.7|ADP-ribosylation factor 6
mm10_v2_chr7_+_59228743_59228769	0.0864117	UGUGCUU	ENSMUST00000107537.1|Ube3a|ENSMUSG00000025326.8|ubiquitin protein ligase E3A
mm10_v2_chr14_-_18239053_18239127	0.0860276	UGUGCUU	ENSMUST00000090543.5|Nr1d2|ENSMUSG00000021775.10|nuclear receptor subfamily 1, group D, member 2
mm10_v2_chr8_-_105827190_105827350	0.0859973	UGUGCUU	ENSMUST00000041400.5|Ranbp10|ENSMUSG00000037415.5|RAN binding protein 10
mm10_v2_chr11_-_6475992_6476102	0.0851183	UGUGCUU	ENSMUST00000179343.1|Purb|ENSMUSG00000094483.1|purine rich element binding protein B
mm10_v2_chr15_-_90679307_90679432	0.08476	UGUGCUU	ENSMUST00000014777.8|Cpne8|ENSMUSG00000052560.9|copine VIII 	ENSMUST00000064391.5|Cpne8|ENSMUSG00000052560.9|copine VIII
mm10_v2_chr2_+_156420837_156420909	0.0846929	UGUGCUU	ENSMUST00000103137.3|Epb4.1l1|ENSMUSG00000027624.11|erythrocyte protein band 4.1-like 1
mm10_v2_chr16_+_52031549_52031570	0.0842283	UGUGCUU	ENSMUST00000114471.1|Cblb|ENSMUSG00000022637.10|Casitas B-lineage lymphoma b
mm10_v2_chr1_+_85894281_85894281	0.0828204	UGUGCUU	ENSMUST00000027425.9|Itm2c|ENSMUSG00000026223.9|integral membrane protein 2C
mm10_v2_chr13_+_9093893_9093927	0.0824327	UGUGCUU	ENSMUST00000091829.2|Larp4b|ENSMUSG00000033499.7|La ribonucleoprotein domain family, member 4B
mm10_v2_chr5_+_73491026_73491110	0.08088	UGUGCUU	ENSMUST00000063882.5|Dcun1d4|ENSMUSG00000051674.8|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae) 	ENSMUST00000113558.1|Dcun1d4|ENSMUSG00000051674.8|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm10_v2_chr13_-_95250166_95250336	0.0808014	UGUGCUU	ENSMUST00000162153.1|Pde8b|ENSMUSG00000021684.10|phosphodiesterase 8B 	ENSMUST00000160957.2|Pde8b|ENSMUSG00000021684.10|phosphodiesterase 8B 	ENSMUST00000159598.1|Pde8b|ENSMUSG00000021684.10|phosphodiesterase 8B 	ENSMUST00000162412.1|Pde8b|ENSMUSG00000021684.10|phosphodiesterase 8B
mm10_v2_chr9_+_118926453_118926568	0.0805008	UGUGCUU	ENSMUST00000073109.5|Ctdspl|ENSMUSG00000047409.7|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
mm10_v2_chr11_-_120633594_120633605	0.08005	UGUGCUU	ENSMUST00000058162.7|Mafg|ENSMUSG00000051510.7|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
mm10_v2_chr13_+_111686178_111686210	0.0800263	UGUGCUU	ENSMUST00000109272.2|Mier3|ENSMUSG00000032727.7|mesoderm induction early response 1, family member 3
mm10_v2_chr3_-_69127098_69127113	0.0794854	UGUGCUU	ENSMUST00000029353.2|Kpna4|ENSMUSG00000027782.4|karyopherin (importin) alpha 4
mm10_v2_chr2_+_3284202_3284220	0.0793317	UGUGCUU	ENSMUST00000081932.6|Nmt2|ENSMUSG00000026643.10|N-myristoyltransferase 2
mm10_v2_chr12_+_105784694_105784872	0.0792076	UGUGCUU	ENSMUST00000109901.2|Papola|ENSMUSG00000021111.9|poly (A) polymerase alpha 	ENSMUST00000168186.1|Papola|ENSMUSG00000021111.9|poly (A) polymerase alpha 	ENSMUST00000163473.1|Papola|ENSMUSG00000021111.9|poly (A) polymerase alpha 	ENSMUST00000170540.1|Papola|ENSMUSG00000021111.9|poly (A) polymerase alpha 	ENSMUST00000166735.1|Papola|ENSMUSG00000021111.9|poly (A) polymerase alpha 	ENSMUST00000170002.1|Papola|ENSMUSG00000021111.9|poly (A) polymerase alpha
mm10_v2_chr2_+_130906461_130906500	0.0784298	UGUGCUU	ENSMUST00000028781.8|Atrn|ENSMUSG00000027312.8|attractin
mm10_v2_chr19_+_22448242_22448283	0.0782636	UGUGCUU	ENSMUST00000037901.6|Trpm3|ENSMUSG00000052387.9|transient receptor potential cation channel, subfamily M, member 3
mm10_v2_chr9_+_119894876_119894913	0.0769632	UGUGCUU	ENSMUST00000036561.6|Wdr48|ENSMUSG00000032512.6|WD repeat domain 48
mm10_v2_chr15_+_32920723_32920826	0.0756683	UGUGCUU	ENSMUST00000022871.5|Sdc2|ENSMUSG00000022261.5|syndecan 2
mm10_v2_chr18_-_61911783_61911854	0.0751287	UGUGCUU	ENSMUST00000049378.8|Ablim3|ENSMUSG00000032735.8|actin binding LIM protein family, member 3 	ENSMUST00000166783.1|Ablim3|ENSMUSG00000032735.8|actin binding LIM protein family, member 3
mm10_v2_chr18_+_40258361_40258361	0.0744266	UGUGCUU	ENSMUST00000091927.4|Kctd16|ENSMUSG00000051401.6|potassium channel tetramerisation domain containing 16
mm10_v2_chr3_-_104961695_104961728	0.0743864	UGUGCUU	ENSMUST00000029429.4|Wnt2b|ENSMUSG00000027840.4|wingless related MMTV integration site 2b
mm10_v2_chr6_+_71493850_71493918	0.0738646	UGUGCUU	ENSMUST00000064637.4|Rnf103|ENSMUSG00000052656.6|ring finger protein 103 	ENSMUST00000114178.1|Rnf103|ENSMUSG00000052656.6|ring finger protein 103
mm10_v2_chr4_-_94979063_94979106	0.0733365	UGUGCUU	ENSMUST00000075872.3|Mysm1|ENSMUSG00000062627.3|myb-like, SWIRM and MPN domains 1
mm10_v2_chr5_-_51553896_51553921	0.0726383	UGUGCUU	ENSMUST00000132734.1|Ppargc1a|ENSMUSG00000029167.7|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm10_v2_chr3_-_130060850_130060907	0.0713814	UGUGCUU	ENSMUST00000001079.8|Sec24b|ENSMUSG00000001052.9|Sec24 related gene family, member B (S. cerevisiae)
mm10_v2_chr9_-_51008936_51009080	0.0712946	UGUGCUU	ENSMUST00000176824.1|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2 	ENSMUST00000176663.1|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2 	ENSMUST00000041375.10|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2
mm10_v2_chr9_+_58823512_58823512	0.0707148	UGUGCUU	ENSMUST00000034889.8|Hcn4|ENSMUSG00000032338.8|hyperpolarization-activated, cyclic nucleotide-gated K+ 4
mm10_v2_chr7_-_121707253_121707460	0.0704738	UGUGCUU	ENSMUST00000046929.6|Usp31|ENSMUSG00000063317.6|ubiquitin specific peptidase 31
mm10_v2_chr8_-_71671723_71671772	0.0704359	UGUGCUU	ENSMUST00000177517.1|Unc13a|ENSMUSG00000034799.10|unc-13 homolog A (C. elegans) 	ENSMUST00000030170.8|Unc13a|ENSMUSG00000034799.10|unc-13 homolog A (C. elegans)
mm10_v2_chr11_-_23497867_23497962	0.0700379	UGUGCUU	ENSMUST00000128559.1|Ahsa2|ENSMUSG00000020288.7|AHA1, activator of heat shock protein ATPase 2 	ENSMUST00000147157.1|Ahsa2|ENSMUSG00000020288.7|AHA1, activator of heat shock protein ATPase 2 	ENSMUST00000109539.1|Ahsa2|ENSMUSG00000020288.7|AHA1, activator of heat shock protein ATPase 2
mm10_v2_chr9_+_44604844_44604921	0.0687046	UGUGCUU	ENSMUST00000170489.1|Ddx6|ENSMUSG00000032097.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm10_v2_chr5_-_66173051_66173117	0.0680511	UGUGCUU	ENSMUST00000113726.1|Rbm47|ENSMUSG00000070780.5|RNA binding motif protein 47
mm10_v2_chr10_+_127739516_127739592	0.0676709	UGUGCUU	ENSMUST00000054287.7|Zbtb39|ENSMUSG00000044617.7|zinc finger and BTB domain containing 39
mm10_v2_chr11_+_117115195_117115257	0.0673253	UGUGCUU	ENSMUST00000103026.3|Sec14l1|ENSMUSG00000020823.10|SEC14-like 1 (S. cerevisiae) 	ENSMUST00000090433.5|Sec14l1|ENSMUSG00000020823.10|SEC14-like 1 (S. cerevisiae)
mm10_v2_chr9_+_4309719_4309748	0.0667279	UGUGCUU	ENSMUST00000049648.7|Kbtbd3|ENSMUSG00000025893.7|kelch repeat and BTB (POZ) domain containing 3
mm10_v2_chr18_+_35965036_35965087	0.0667229	UGUGCUU	ENSMUST00000176873.1|Psd2|ENSMUSG00000024347.10|pleckstrin and Sec7 domain containing 2 	ENSMUST00000177432.1|Psd2|ENSMUSG00000024347.10|pleckstrin and Sec7 domain containing 2
mm10_v2_chr1_+_178187417_178187713	0.0665325	UGUGCUU	ENSMUST00000161075.1|Desi2|ENSMUSG00000026502.7|desumoylating isopeptidase 2 	ENSMUST00000027783.7|Desi2|ENSMUSG00000026502.7|desumoylating isopeptidase 2
mm10_v2_chr17_-_56036546_56036647	0.0664783	UGUGCUU	ENSMUST00000003268.9|Sh3gl1|ENSMUSG00000003200.9|SH3-domain GRB2-like 1
mm10_v2_chr11_-_104442232_104442291	0.0662431	UGUGCUU	ENSMUST00000106977.1|Kansl1|ENSMUSG00000018412.10|KAT8 regulatory NSL complex subunit 1 	ENSMUST00000106972.1|Kansl1|ENSMUSG00000018412.10|KAT8 regulatory NSL complex subunit 1
mm10_v2_chrX_-_143933204_143933311	0.0655329	UGUGCUU	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr5_-_18360384_18360473	0.0643823	UGUGCUU	ENSMUST00000074694.5|Gnai1|ENSMUSG00000057614.5|guanine nucleotide binding protein (G protein), alpha inhibiting 1
mm10_v2_chr13_+_92611119_92611139	0.0638537	UGUGCUU	ENSMUST00000049488.7|Serinc5|ENSMUSG00000021703.8|serine incorporator 5
mm10_v2_chr6_+_145211134_145211222	0.0637155	UGUGCUU	ENSMUST00000111725.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111726.3|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000039729.3|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111723.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111724.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111721.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111719.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5
mm10_v2_chr16_-_64786321_64786321	0.0633676	UGUGCUU	ENSMUST00000052588.4|Zfp654|ENSMUSG00000047141.4|zinc finger protein 654
mm10_v2_chr2_+_164456936_164456988	0.0627	UGUGCUU	ENSMUST00000109352.1|Sys1|ENSMUSG00000045503.10|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
mm10_v2_chr13_-_51567084_51567084	0.0623166	UGUGCUU	ENSMUST00000021898.5|Shc3|ENSMUSG00000021448.6|src homology 2 domain-containing transforming protein C3
mm10_v2_chr12_-_91590009_91590056	0.0608965	UGUGCUU	ENSMUST00000021345.6|Gtf2a1|ENSMUSG00000020962.7|general transcription factor II A, 1
mm10_v2_chr11_+_53350783_53350833	0.0607496	UGUGCUU	ENSMUST00000060945.5|Aff4|ENSMUSG00000049470.7|AF4/FMR2 family, member 4
mm10_v2_chr2_+_71981184_71981287	0.0587947	UGUGCUU	ENSMUST00000090826.5|Rapgef4|ENSMUSG00000049044.10|Rap guanine nucleotide exchange factor (GEF) 4 	ENSMUST00000102698.3|Rapgef4|ENSMUSG00000049044.10|Rap guanine nucleotide exchange factor (GEF) 4
mm10_v2_chr2_-_104410334_104410334	0.0586014	UGUGCUU	ENSMUST00000089726.3|D430041D05Rik|ENSMUSG00000068373.8|RIKEN cDNA D430041D05 gene
mm10_v2_chr14_+_25459206_25459225	0.0583893	UGUGCUU	ENSMUST00000162645.1|Zmiz1|ENSMUSG00000007817.8|zinc finger, MIZ-type containing 1
mm10_v2_chr14_-_21052420_21052450	0.0579271	UGUGCUU	ENSMUST00000154460.1|Ap3m1|ENSMUSG00000021824.6|adaptor-related protein complex 3, mu 1 subunit
mm10_v2_chr16_+_17233560_17233664	0.0576672	UGUGCUU	ENSMUST00000090190.5|Hic2|ENSMUSG00000050240.8|hypermethylated in cancer 2 	ENSMUST00000115698.2|Hic2|ENSMUSG00000050240.8|hypermethylated in cancer 2
mm10_v2_chr15_-_82912134_82912190	0.0574344	UGUGCUU	ENSMUST00000048966.5|Tcf20|ENSMUSG00000041852.8|transcription factor 20 	ENSMUST00000109510.2|Tcf20|ENSMUSG00000041852.8|transcription factor 20
mm10_v2_chr3_+_31095052_31095125	0.057262	UGUGCUU	ENSMUST00000118470.1|Skil|ENSMUSG00000027660.10|SKI-like 	ENSMUST00000029194.5|Skil|ENSMUSG00000027660.10|SKI-like 	ENSMUST00000123532.1|Skil|ENSMUSG00000027660.10|SKI-like 	ENSMUST00000117728.1|Skil|ENSMUSG00000027660.10|SKI-like
mm10_v2_chr3_+_90248172_90248228	0.056776	UGUGCUU	ENSMUST00000015467.8|Slc39a1|ENSMUSG00000052310.9|solute carrier family 39 (zinc transporter), member 1
mm10_v2_chr1_-_80340480_80340512	0.0567598	UGUGCUU	ENSMUST00000163119.1|Cul3|ENSMUSG00000004364.8|cullin 3
mm10_v2_chr17_+_34592248_34592329	0.0564153	UGUGCUU	ENSMUST00000038149.6|Pbx2|ENSMUSG00000034673.8|pre B cell leukemia homeobox 2
mm10_v2_chr19_-_31765027_31765079	0.0557125	UGUGCUU	ENSMUST00000065067.6|Prkg1|ENSMUSG00000052920.8|protein kinase, cGMP-dependent, type I
mm10_v2_chr4_-_126429501_126429556	0.0549853	UGUGCUU	ENSMUST00000069097.6|Ago3|ENSMUSG00000028842.9|argonaute RISC catalytic subunit 3
mm10_v2_chr19_-_5085483_5085531	0.0539087	UGUGCUU	ENSMUST00000140389.1|Tmem151a|ENSMUSG00000061451.7|transmembrane protein 151A 	ENSMUST00000151413.1|Tmem151a|ENSMUSG00000061451.7|transmembrane protein 151A 	ENSMUST00000077066.7|Tmem151a|ENSMUSG00000061451.7|transmembrane protein 151A
mm10_v2_chr2_+_90940397_90940543	0.0537607	UGUGCUU	ENSMUST00000068726.6|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000005643.7|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000177642.1|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000111451.3|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000068747.7|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1
mm10_v2_chr7_-_100121512_100121565	0.0537277	UGUGCUU	ENSMUST00000032969.7|Pold3|ENSMUSG00000030726.9|polymerase (DNA-directed), delta 3, accessory subunit
mm10_v2_chr2_-_63184253_63184292	0.0535168	UGUGCUU	ENSMUST00000075052.3|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7 	ENSMUST00000112454.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr16_+_84835070_84835124	0.053451	UGUGCUU	ENSMUST00000009120.7|Gabpa|ENSMUSG00000008976.10|GA repeat binding protein, alpha
mm10_v2_chr17_-_51832666_51832678	0.053404	UGUGCUU	ENSMUST00000144331.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr19_-_8839181_8839265	0.0533336	UGUGCUU	ENSMUST00000096259.4|Gng3|ENSMUSG00000071658.4|guanine nucleotide binding protein (G protein), gamma 3
mm10_v2_chr17_-_83631892_83631934	0.0531459	UGUGCUU	ENSMUST00000051482.1|Kcng3|ENSMUSG00000045053.1|potassium voltage-gated channel, subfamily G, member 3
mm10_v2_chr5_+_67260565_67260692	0.0517509	UGUGCUU	ENSMUST00000037918.5|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33 	ENSMUST00000162543.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33
mm10_v2_chr4_-_155222535_155222592	0.0512856	UGUGCUU	ENSMUST00000084103.3|Ski|ENSMUSG00000029050.9|ski sarcoma viral oncogene homolog (avian) 	ENSMUST00000030917.5|Ski|ENSMUSG00000029050.9|ski sarcoma viral oncogene homolog (avian)
mm10_v2_chr6_-_126645784_126645801	0.0510413	UGUGCUU	ENSMUST00000055168.3|Kcna1|ENSMUSG00000047976.3|potassium voltage-gated channel, shaker-related subfamily, member 1
mm10_v2_chr19_+_46599081_46599150	0.0480717	UGUGCUU	ENSMUST00000138302.2|Wbp1l|ENSMUSG00000047731.11|WW domain binding protein 1 like 	ENSMUST00000099376.4|Wbp1l|ENSMUSG00000047731.11|WW domain binding protein 1 like
mm10_v2_chrX_+_7822289_7822289	0.0478801	UGUGCUU	ENSMUST00000009875.4|Kcnd1|ENSMUSG00000009731.4|potassium voltage-gated channel, Shal-related family, member 1
mm10_v2_chr5_-_137786651_137786668	0.0475716	UGUGCUU	ENSMUST00000031740.9|Mepce|ENSMUSG00000029726.10|methylphosphate capping enzyme
mm10_v2_chr12_+_84114321_84114391	0.0460983	UGUGCUU	ENSMUST00000123491.1|Dnal1|ENSMUSG00000042523.6|dynein, axonemal, light chain 1 	ENSMUST00000046340.2|Dnal1|ENSMUSG00000042523.6|dynein, axonemal, light chain 1 	ENSMUST00000136159.1|Dnal1|ENSMUSG00000042523.6|dynein, axonemal, light chain 1
mm10_v2_chr18_-_38211957_38212053	0.0460832	UGUGCUU	ENSMUST00000159405.1|Pcdh1|ENSMUSG00000051375.9|protocadherin 1 	ENSMUST00000160721.1|Pcdh1|ENSMUSG00000051375.9|protocadherin 1
mm10_v2_chr14_-_20668269_20668354	0.0450934	UGUGCUU	ENSMUST00000057090.5|Synpo2l|ENSMUSG00000039376.7|synaptopodin 2-like 	ENSMUST00000117386.1|Synpo2l|ENSMUSG00000039376.7|synaptopodin 2-like
mm10_v2_chrX_-_74085586_74085652	0.0445961	UGUGCUU	ENSMUST00000123362.1|Mecp2|ENSMUSG00000031393.10|methyl CpG binding protein 2 	ENSMUST00000140399.1|Mecp2|ENSMUSG00000031393.10|methyl CpG binding protein 2 	ENSMUST00000100750.3|Mecp2|ENSMUSG00000031393.10|methyl CpG binding protein 2
mm10_v2_chr1_+_127774164_127774238	0.0444832	UGUGCUU	ENSMUST00000027587.8|Ccnt2|ENSMUSG00000026349.8|cyclin T2 	ENSMUST00000112570.1|Ccnt2|ENSMUSG00000026349.8|cyclin T2
mm10_v2_chr14_-_55092277_55092324	0.043822	UGUGCUU	ENSMUST00000036328.8|Zfhx2|ENSMUSG00000040721.8|zinc finger homeobox 2
mm10_v2_chr12_+_80463095_80463179	0.0438021	UGUGCUU	ENSMUST00000038185.8|Exd2|ENSMUSG00000032705.8|exonuclease 3'-5' domain containing 2
mm10_v2_chr5_+_47984793_47984811	0.0435427	UGUGCUU	ENSMUST00000170109.2|Slit2|ENSMUSG00000031558.9|slit homolog 2 (Drosophila) 	ENSMUST00000174421.1|Slit2|ENSMUSG00000031558.9|slit homolog 2 (Drosophila) 	ENSMUST00000173702.1|Slit2|ENSMUSG00000031558.9|slit homolog 2 (Drosophila) 	ENSMUST00000173107.1|Slit2|ENSMUSG00000031558.9|slit homolog 2 (Drosophila)
mm10_v2_chr9_+_101074727_101074727	0.0429762	UGUGCUU	ENSMUST00000085177.3|Msl2|ENSMUSG00000066415.3|male-specific lethal 2 homolog (Drosophila)
mm10_v2_chrX_+_20848543_20848589	0.0428103	UGUGCUU	ENSMUST00000001155.4|Araf|ENSMUSG00000001127.6|v-raf murine sarcoma 3611 viral oncogene homolog 	ENSMUST00000122312.1|Araf|ENSMUSG00000001127.6|v-raf murine sarcoma 3611 viral oncogene homolog 	ENSMUST00000120356.1|Araf|ENSMUSG00000001127.6|v-raf murine sarcoma 3611 viral oncogene homolog 	ENSMUST00000122850.1|Araf|ENSMUSG00000001127.6|v-raf murine sarcoma 3611 viral oncogene homolog
mm10_v2_chr10_-_11082287_11082372	0.042798	UGUGCUU	ENSMUST00000105561.2|Grm1|ENSMUSG00000019828.7|glutamate receptor, metabotropic 1 	ENSMUST00000044306.6|Grm1|ENSMUSG00000019828.7|glutamate receptor, metabotropic 1
mm10_v2_chr19_+_23141183_23141263	0.0425027	UGUGCUU	ENSMUST00000036884.1|Klf9|ENSMUSG00000033863.1|Kruppel-like factor 9
mm10_v2_chr18_+_34777008_34777075	0.0424373	UGUGCUU	ENSMUST00000043775.7|Kdm3b|ENSMUSG00000038773.10|KDM3B lysine (K)-specific demethylase 3B
mm10_v2_chr1_-_135585314_135585364	0.0423913	UGUGCUU	ENSMUST00000040599.8|Nav1|ENSMUSG00000009418.9|neuron navigator 1 	ENSMUST00000067414.6|Nav1|ENSMUSG00000009418.9|neuron navigator 1
mm10_v2_chr10_+_89744988_89745022	0.0422034	UGUGCUU	ENSMUST00000020112.5|Uhrf1bp1l|ENSMUSG00000019951.9|UHRF1 (ICBP90) binding protein 1-like
mm10_v2_chr9_-_36797273_36797293	0.0418337	UGUGCUU	ENSMUST00000163192.3|Ei24|ENSMUSG00000062762.9|etoposide induced 2.4 mRNA
mm10_v2_chr9_-_114026711_114026764	0.0416525	UGUGCUU	ENSMUST00000117537.1|Fbxl2|ENSMUSG00000032507.9|F-box and leucine-rich repeat protein 2 	ENSMUST00000035090.7|Fbxl2|ENSMUSG00000032507.9|F-box and leucine-rich repeat protein 2
mm10_v2_chr10_+_52391606_52391610	0.0415397	UGUGCUU	ENSMUST00000067085.4|Nepn|ENSMUSG00000038624.11|nephrocan
mm10_v2_chr11_+_29373618_29373777	0.0412774	UGUGCUU	ENSMUST00000040182.6|Ccdc88a|ENSMUSG00000032740.10|coiled coil domain containing 88A 	ENSMUST00000109477.1|Ccdc88a|ENSMUSG00000032740.10|coiled coil domain containing 88A
mm10_v2_chr4_+_130663321_130663412	0.040954	UGUGCUU	ENSMUST00000030315.6|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila) 	ENSMUST00000105992.2|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila) 	ENSMUST00000105991.2|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila) 	ENSMUST00000143277.1|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila) 	ENSMUST00000097864.2|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila) 	ENSMUST00000097862.2|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila)
mm10_v2_chr2_+_59160884_59161008	0.0407153	UGUGCUU	ENSMUST00000037903.8|Pkp4|ENSMUSG00000026991.14|plakophilin 4
mm10_v2_chr19_-_50678642_50678702	0.0402491	UGUGCUU	ENSMUST00000072685.6|Sorcs1|ENSMUSG00000043531.9|VPS10 domain receptor protein SORCS 1 	ENSMUST00000164039.2|Sorcs1|ENSMUSG00000043531.9|VPS10 domain receptor protein SORCS 1
mm10_v2_chr11_-_88718223_88718294	0.0389873	UGUGCUU	ENSMUST00000107909.1|Msi2|ENSMUSG00000069769.7|musashi RNA-binding protein 2
mm10_v2_chr11_+_29172890_29172925	0.038539	UGUGCUU	ENSMUST00000102856.2|Smek2|ENSMUSG00000020463.9|SMEK homolog 2, suppressor of mek1 (Dictyostelium) 	ENSMUST00000020755.5|Smek2|ENSMUSG00000020463.9|SMEK homolog 2, suppressor of mek1 (Dictyostelium)
mm10_v2_chr19_-_7483241_7483289	0.0379388	UGUGCUU	ENSMUST00000025667.6|Rtn3|ENSMUSG00000024758.8|reticulon 3 	ENSMUST00000065304.5|Rtn3|ENSMUSG00000024758.8|reticulon 3 	ENSMUST00000088171.4|Rtn3|ENSMUSG00000024758.8|reticulon 3
mm10_v2_chr13_-_45964964_45965001	0.0373681	UGUGCUU	ENSMUST00000180110.1|Atxn1|ENSMUSG00000046876.9|ataxin 1 	ENSMUST00000091628.3|Atxn1|ENSMUSG00000046876.9|ataxin 1 	ENSMUST00000167708.2|Atxn1|ENSMUSG00000046876.9|ataxin 1
mm10_v2_chr9_-_65827544_65827576	0.0372989	UGUGCUU	ENSMUST00000159109.1|Zfp609|ENSMUSG00000040524.9|zinc finger protein 609
mm10_v2_chr12_+_105685352_105685430	0.0371255	UGUGCUU	ENSMUST00000051934.5|Gskip|ENSMUSG00000044715.6|GSK3B interacting protein
mm10_v2_chr3_-_19311269_19311322	0.0356961	UGUGCUU	ENSMUST00000099195.3|Pde7a|ENSMUSG00000069094.6|phosphodiesterase 7A
mm10_v2_chr2_+_10372426_10372497	0.0342978	UGUGCUU	ENSMUST00000114864.2|Sfmbt2|ENSMUSG00000061186.9|Scm-like with four mbt domains 2 	ENSMUST00000116594.2|Sfmbt2|ENSMUSG00000061186.9|Scm-like with four mbt domains 2 	ENSMUST00000041105.6|Sfmbt2|ENSMUSG00000061186.9|Scm-like with four mbt domains 2
mm10_v2_chr18_-_88894322_88894371	0.034216	UGUGCUU	ENSMUST00000070116.5|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6 	ENSMUST00000125362.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr12_-_83921899_83921934	0.0335072	UGUGCUU	ENSMUST00000117217.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr9_-_108190352_108190420	0.0333484	UGUGCUU	ENSMUST00000035208.7|Bsn|ENSMUSG00000032589.8|bassoon
mm10_v2_chr16_+_35983307_35983395	0.0321897	UGUGCUU	ENSMUST00000004054.6|Kpna1|ENSMUSG00000022905.6|karyopherin (importin) alpha 1
mm10_v2_chr6_+_30401866_30401965	0.0315506	UGUGCUU	ENSMUST00000068240.6|Klhdc10|ENSMUSG00000029775.8|kelch domain containing 10 	ENSMUST00000068259.6|Klhdc10|ENSMUSG00000029775.8|kelch domain containing 10
mm10_v2_chr10_+_43479140_43479194	0.0312538	UGUGCUU	ENSMUST00000167488.1|Bend3|ENSMUSG00000038214.8|BEN domain containing 3 	ENSMUST00000040147.7|Bend3|ENSMUSG00000038214.8|BEN domain containing 3
mm10_v2_chr19_+_42090422_42090502	0.0312271	UGUGCUU	ENSMUST00000066778.4|Pi4k2a|ENSMUSG00000025178.8|phosphatidylinositol 4-kinase type 2 alpha
mm10_v2_chr1_-_80213931_80213949	0.0306782	UGUGCUU	ENSMUST00000058748.1|Fam124b|ENSMUSG00000043230.2|family with sequence similarity 124, member B
mm10_v2_chr1_+_15712303_15712303	0.030493	UGUGCUU	ENSMUST00000170146.1|Kcnb2|ENSMUSG00000090498.1|potassium voltage gated channel, Shab-related subfamily, member 2
mm10_v2_chr16_-_67620880_67620922	0.0302024	UGUGCUU	ENSMUST00000114292.1|Cadm2|ENSMUSG00000064115.7|cell adhesion molecule 2 	ENSMUST00000120898.1|Cadm2|ENSMUSG00000064115.7|cell adhesion molecule 2
mm10_v2_chr12_+_70453095_70453107	0.0301703	UGUGCUU	ENSMUST00000021471.6|Tmx1|ENSMUSG00000021072.6|thioredoxin-related transmembrane protein 1
mm10_v2_chr6_-_32588192_32588213	0.0294743	UGUGCUU	ENSMUST00000115096.2|Plxna4|ENSMUSG00000029765.10|plexin A4
mm10_v2_chr11_+_59662471_59662543	0.0291281	UGUGCUU	ENSMUST00000072031.6|Mprip|ENSMUSG00000005417.11|myosin phosphatase Rho interacting protein 	ENSMUST00000116371.1|Mprip|ENSMUSG00000005417.11|myosin phosphatase Rho interacting protein 	ENSMUST00000108751.1|Mprip|ENSMUSG00000005417.11|myosin phosphatase Rho interacting protein 	ENSMUST00000066330.8|Mprip|ENSMUSG00000005417.11|myosin phosphatase Rho interacting protein
mm10_v2_chr7_-_35754394_35754454	0.0284654	UGUGCUU	ENSMUST00000051377.8|Dpy19l3|ENSMUSG00000043671.8|dpy-19-like 3 (C. elegans)
mm10_v2_chr2_+_153649442_153649460	0.0279845	UGUGCUU	ENSMUST00000072997.3|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000109773.1|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000109774.2|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000081628.6|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000103151.1|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000088976.5|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000109772.1|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000103150.3|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000056495.7|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B
mm10_v2_chr19_-_7341792_7341829	0.0274046	UGUGCUU	ENSMUST00000164205.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000165286.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000168324.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000032557.8|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2
mm10_v2_chr8_+_40511769_40511787	0.0269179	UGUGCUU	ENSMUST00000098817.2|Vps37a|ENSMUSG00000031600.10|vacuolar protein sorting 37A (yeast)
mm10_v2_chr16_-_50432340_50432409	0.0269066	UGUGCUU	ENSMUST00000066037.6|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089399.4|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089404.3|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000114477.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000138166.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila)
mm10_v2_chr5_-_20951769_20951824	0.02662	UGUGCUU	ENSMUST00000036489.5|Rsbn1l|ENSMUSG00000039968.5|round spermatid basic protein 1-like
mm10_v2_chr1_-_64617153_64617242	0.0265668	UGUGCUU	ENSMUST00000053469.1|Mettl21a|ENSMUSG00000025956.4|methyltransferase like 21A 	ENSMUST00000114079.2|Mettl21a|ENSMUSG00000025956.4|methyltransferase like 21A
mm10_v2_chr11_-_119040905_119040969	0.0256877	UGUGCUU	ENSMUST00000026663.7|Cbx8|ENSMUSG00000025578.9|chromobox 8
mm10_v2_chr13_+_42052015_42052072	0.0256623	UGUGCUU	ENSMUST00000060148.5|Hivep1|ENSMUSG00000021366.7|human immunodeficiency virus type I enhancer binding protein 1
mm10_v2_chr4_+_131873608_131873679	0.0254835	UGUGCUU	ENSMUST00000053819.3|Srsf4|ENSMUSG00000028911.10|serine/arginine-rich splicing factor 4
mm10_v2_chr5_-_89883321_89883343	0.0253492	UGUGCUU	ENSMUST00000163159.1|Adamts3|ENSMUSG00000043635.6|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3 	ENSMUST00000061427.5|Adamts3|ENSMUSG00000043635.6|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3
mm10_v2_chr6_-_22356068_22356175	0.024105	UGUGCUU	ENSMUST00000163963.1|Fam3c|ENSMUSG00000029672.10|family with sequence similarity 3, member C 	ENSMUST00000165576.1|Fam3c|ENSMUSG00000029672.10|family with sequence similarity 3, member C
mm10_v2_chrX_-_41911877_41911912	0.0239257	UGUGCUU	ENSMUST00000047037.8|Thoc2|ENSMUSG00000037475.9|THO complex 2
mm10_v2_chr8_+_105855086_105855149	0.0236221	UGUGCUU	ENSMUST00000040445.7|Thap11|ENSMUSG00000036442.7|THAP domain containing 11
mm10_v2_chr5_+_43233463_43233491	0.0232205	UGUGCUU	ENSMUST00000169035.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2 	ENSMUST00000166713.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2
mm10_v2_chr6_+_100833606_100833663	0.0230938	UGUGCUU	ENSMUST00000063854.4|Ppp4r2|ENSMUSG00000052144.6|protein phosphatase 4, regulatory subunit 2
mm10_v2_chrX_-_113185485_113185522	0.0229232	UGUGCUU	ENSMUST00000026607.8|Chm|ENSMUSG00000025531.8|choroidermia 	ENSMUST00000113388.2|Chm|ENSMUSG00000025531.8|choroidermia
mm10_v2_chr4_-_117496940_117497052	0.0227024	UGUGCUU	ENSMUST00000030439.8|Rnf220|ENSMUSG00000028677.12|ring finger protein 220
mm10_v2_chrX_+_52912232_52912361	0.0225907	UGUGCUU	ENSMUST00000078944.6|Phf6|ENSMUSG00000025626.10|PHD finger protein 6 	ENSMUST00000101587.3|Phf6|ENSMUSG00000025626.10|PHD finger protein 6 	ENSMUST00000154864.2|Phf6|ENSMUSG00000025626.10|PHD finger protein 6
mm10_v2_chr11_+_98863610_98863646	0.0214298	UGUGCUU	ENSMUST00000142414.1|Wipf2|ENSMUSG00000038013.8|WAS/WASL interacting protein family, member 2 	ENSMUST00000037480.8|Wipf2|ENSMUSG00000038013.8|WAS/WASL interacting protein family, member 2
mm10_v2_chr2_+_118901428_118901488	0.0208296	UGUGCUU	ENSMUST00000036578.6|Bahd1|ENSMUSG00000040007.8|bromo adjacent homology domain containing 1
mm10_v2_chr11_+_70844745_70844975	0.020722	UGUGCUU	ENSMUST00000076270.6|Rabep1|ENSMUSG00000020817.10|rabaptin, RAB GTPase binding effector protein 1 	ENSMUST00000179114.1|Rabep1|ENSMUSG00000020817.10|rabaptin, RAB GTPase binding effector protein 1 	ENSMUST00000100928.4|Rabep1|ENSMUSG00000020817.10|rabaptin, RAB GTPase binding effector protein 1 	ENSMUST00000177731.1|Rabep1|ENSMUSG00000020817.10|rabaptin, RAB GTPase binding effector protein 1 	ENSMUST00000108533.3|Rabep1|ENSMUSG00000020817.10|rabaptin, RAB GTPase binding effector protein 1 	ENSMUST00000081362.6|Rabep1|ENSMUSG00000020817.10|rabaptin, RAB GTPase binding effector protein 1 	ENSMUST00000178245.1|Rabep1|ENSMUSG00000020817.10|rabaptin, RAB GTPase binding effector protein 1
mm10_v2_chr18_+_36281069_36281151	0.0200972	UGUGCUU	ENSMUST00000051301.3|Pura|ENSMUSG00000043991.3|purine rich element binding protein A
mm10_v2_chr19_-_12796108_12796146	0.018608	UGUGCUU	ENSMUST00000038627.8|Zfp91|ENSMUSG00000024695.9|zinc finger protein 91
mm10_v2_chr1_+_160044374_160044452	0.0176999	UGUGCUU	ENSMUST00000163892.1|4930523C07Rik|ENSMUSG00000090394.2|RIKEN cDNA 4930523C07 gene
mm10_v2_chr4_-_126736236_126736245	0.0172516	UGUGCUU	ENSMUST00000048194.7|Tfap2e|ENSMUSG00000042477.7|transcription factor AP-2, epsilon
mm10_v2_chr2_+_76406529_76406580	0.0168092	UGUGCUU	ENSMUST00000111929.1|Osbpl6|ENSMUSG00000042359.12|oxysterol binding protein-like 6 	ENSMUST00000077972.4|Osbpl6|ENSMUSG00000042359.12|oxysterol binding protein-like 6 	ENSMUST00000111930.2|Osbpl6|ENSMUSG00000042359.12|oxysterol binding protein-like 6
mm10_v2_chr16_+_55973881_55973892	0.0162844	UGUGCUU	ENSMUST00000050248.8|Rpl24|ENSMUSG00000022601.11|ribosomal protein L24
mm10_v2_chr6_+_120364094_120364163	0.0162424	UGUGCUU	ENSMUST00000100996.3|Kdm5a|ENSMUSG00000030180.9|lysine (K)-specific demethylase 5A 	ENSMUST00000005108.7|Kdm5a|ENSMUSG00000030180.9|lysine (K)-specific demethylase 5A
mm10_v2_chr7_-_67372846_67372858	0.0161178	UGUGCUU	ENSMUST00000156690.1|Mef2a|ENSMUSG00000030557.10|myocyte enhancer factor 2A 	ENSMUST00000107476.1|Mef2a|ENSMUSG00000030557.10|myocyte enhancer factor 2A 	ENSMUST00000076325.5|Mef2a|ENSMUSG00000030557.10|myocyte enhancer factor 2A 	ENSMUST00000032776.8|Mef2a|ENSMUSG00000030557.10|myocyte enhancer factor 2A 	ENSMUST00000133074.1|Mef2a|ENSMUSG00000030557.10|myocyte enhancer factor 2A
mm10_v2_chr12_+_86241848_86241936	0.0155921	UGUGCUU	ENSMUST00000071106.4|Gpatch2l|ENSMUSG00000021254.8|G patch domain containing 2 like
mm10_v2_chr15_-_66286224_66286224	0.0147733	UGUGCUU	ENSMUST00000070256.7|Kcnq3|ENSMUSG00000056258.8|potassium voltage-gated channel, subfamily Q, member 3
mm10_v2_chr4_+_138216296_138216324	0.0142882	UGUGCUU	ENSMUST00000105827.1|Hp1bp3|ENSMUSG00000028759.7|heterochromatin protein 1, binding protein 3
mm10_v2_chrX_+_153237748_153237748	0.0139958	UGUGCUU	ENSMUST00000112574.2|Klf8|ENSMUSG00000041649.7|Kruppel-like factor 8
mm10_v2_chr3_+_98382438_98382520	0.0117276	UGUGCUU	ENSMUST00000056096.8|Zfp697|ENSMUSG00000050064.8|zinc finger protein 697
mm10_v2_chr16_+_42907563_42907684	0.0116684	UGUGCUU	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr6_-_24664960_24665038	0.0113598	UGUGCUU	ENSMUST00000041737.7|Wasl|ENSMUSG00000029684.8|Wiskott-Aldrich syndrome-like (human) 	ENSMUST00000031695.8|Wasl|ENSMUSG00000029684.8|Wiskott-Aldrich syndrome-like (human)
mm10_v2_chr16_-_3872378_3872411	0.0105276	UGUGCUU	ENSMUST00000090522.4|Zfp597|ENSMUSG00000039789.7|zinc finger protein 597
mm10_v2_chr3_-_30969399_30969425	0.00924183	UGUGCUU	ENSMUST00000177992.1|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000129817.2|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000168645.1|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000108255.1|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000064718.5|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000099163.3|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila)
mm10_v2_chr6_-_39725448_39725478	0.0085696	UGUGCUU	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr15_+_92051153_92051170	0.00841877	UGUGCUU	ENSMUST00000169825.1|Cntn1|ENSMUSG00000055022.8|contactin 1
mm10_v2_chr5_-_113310729_113310788	0.00610918	UGUGCUU	ENSMUST00000112325.1|Sgsm1|ENSMUSG00000042216.7|small G protein signaling modulator 1 	ENSMUST00000048112.6|Sgsm1|ENSMUSG00000042216.7|small G protein signaling modulator 1
mm10_v2_chr15_+_102406143_102406380	0.00608868	UGUGCUU	ENSMUST00000170884.1|Sp1|ENSMUSG00000001280.6|trans-acting transcription factor 1 	ENSMUST00000165924.1|Sp1|ENSMUSG00000001280.6|trans-acting transcription factor 1 	ENSMUST00000163709.1|Sp1|ENSMUSG00000001280.6|trans-acting transcription factor 1 	ENSMUST00000001326.6|Sp1|ENSMUSG00000001280.6|trans-acting transcription factor 1
mm10_v2_chr6_+_52713729_52713800	0.00604237	UGUGCUU	ENSMUST00000080723.4|Tax1bp1|ENSMUSG00000004535.6|Tax1 (human T cell leukemia virus type I) binding protein 1 	ENSMUST00000149588.1|Tax1bp1|ENSMUSG00000004535.6|Tax1 (human T cell leukemia virus type I) binding protein 1
mm10_v2_chr7_+_51621830_51621891	0.0059469	UGUGCUU	ENSMUST00000032710.5|Slc17a6|ENSMUSG00000030500.5|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6
mm10_v2_chr17_+_28801090_28801145	0.00554474	UGUGCUU	ENSMUST00000004985.9|Brpf3|ENSMUSG00000063952.9|bromodomain and PHD finger containing, 3
mm10_v2_chr15_-_48791933_48792063	0.005488	UGUGCUU	ENSMUST00000160658.1|Csmd3|ENSMUSG00000022311.9|CUB and Sushi multiple domains 3 	ENSMUST00000100670.3|Csmd3|ENSMUSG00000022311.9|CUB and Sushi multiple domains 3 	ENSMUST00000162830.1|Csmd3|ENSMUSG00000022311.9|CUB and Sushi multiple domains 3
mm10_v2_chr15_+_84923383_84923428	0.00534766	UGUGCUU	ENSMUST00000165443.2|Nup50|ENSMUSG00000016619.9|nucleoporin 50
mm10_v2_chr18_-_63387124_63387189	0.00454074	UGUGCUU	ENSMUST00000047480.6|Piezo2|ENSMUSG00000041482.10|piezo-type mechanosensitive ion channel component 2 	ENSMUST00000046860.5|Piezo2|ENSMUSG00000041482.10|piezo-type mechanosensitive ion channel component 2
mm10_v2_chr11_-_82829024_82829043	0.00202226	UGUGCUU	ENSMUST00000021036.6|Rffl|ENSMUSG00000020696.12|ring finger and FYVE like domain containing protein 	ENSMUST00000074515.4|Rffl|ENSMUSG00000020696.12|ring finger and FYVE like domain containing protein 	ENSMUST00000103218.2|Rffl|ENSMUSG00000020696.12|ring finger and FYVE like domain containing protein
mm10_v2_chr1_+_42952872_42952983	0.00193018	UGUGCUU	ENSMUST00000179766.1|Gpr45|ENSMUSG00000041907.8|G protein-coupled receptor 45
mm10_v2_chr16_+_11984581_11984581	0.000486849	UGUGCUU	ENSMUST00000170672.2|Shisa9|ENSMUSG00000022494.7|shisa homolog 9 (Xenopus laevis) 	ENSMUST00000023138.7|Shisa9|ENSMUSG00000022494.7|shisa homolog 9 (Xenopus laevis)
