GFI1 WT vs 36n/n vs KD
ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.
Motif name | Z-value | Associated genes | Profile | Logo |
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Nrf1 | 7.30 |
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Smad3 | 5.97 |
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Hdx | 5.77 |
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Hcfc1_Six5_Smarcc2_Zfp143 | 5.66 |
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Pou2f2_Pou3f1 | 5.48 |
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Zfx_Zfp711 | 5.42 |
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Ybx1_Nfya_Nfyb_Nfyc_Cebpz | 5.34 |
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Pou1f1 | 5.25 |
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Wrnip1_Mta3_Rcor1 | 5.14 |
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Max_Mycn | 4.94 |
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In order to use ARMADA for infering putative regulatory networks from timecourse data, please set for every sample a timepoint, gap from previous timepoint and replicate. If you have only one replicate per sample you can leave replicate field unset.
Sample name | Condition | Replicate/Batch |
---|---|---|
SRR17857618_R1 | ||
SRR17857618_R2 | ||
SRR17857619_R1 | ||
SRR17857619_R2 | ||
SRR17857624 |