mm39_v1_chr13_+_56757389_56757411	0.19440578054141264	AGCUUAU	ENSMUST00000045173.10|Tgfbi|ENSMUSG00000035493.11|transforming growth factor, beta induced
mm39_v1_chr5_+_52521133_52521322	0.18090293186003495	AGCUUAU	ENSMUST00000101208.6|Sod3|ENSMUSG00000072941.6|superoxide dismutase 3, extracellular
mm39_v1_chr3_-_131138541_131138589	0.1584769690901956	AGCUUAU	ENSMUST00000090246.5|Sgms2|ENSMUSG00000050931.8|sphingomyelin synthase 2	ENSMUST00000126569.2|Sgms2|ENSMUSG00000050931.8|sphingomyelin synthase 2
mm39_v1_chrM_+_3906_3942	0.1042076302082234	AGCUUAU	ENSMUST00000082396.1|mt-Nd2|ENSMUSG00000064345.1|mitochondrially encoded NADH dehydrogenase 2
mm39_v1_chr16_+_4412546_4412599	0.09402149386442636	AGCUUAU	ENSMUST00000014447.13|Glis2|ENSMUSG00000014303.14|GLIS family zinc finger 2
mm39_v1_chrM_+_2743_2761	0.08761800119378729	AGCUUAU	ENSMUST00000082392.1|mt-Nd1|ENSMUSG00000064341.1|mitochondrially encoded NADH dehydrogenase 1
mm39_v1_chr5_+_102629240_102629257	0.08422544398589371	AGCUUAU	ENSMUST00000073302.12|Arhgap24|ENSMUSG00000057315.15|Rho GTPase activating protein 24	ENSMUST00000094559.9|Arhgap24|ENSMUSG00000057315.15|Rho GTPase activating protein 24
mm39_v1_chr18_+_75500600_75500632	0.07320129115086671	AGCUUAU	ENSMUST00000026999.10|Smad7|ENSMUSG00000025880.12|SMAD family member 7
mm39_v1_chr13_-_111945499_111945552	0.0703218212703336	AGCUUAU	ENSMUST00000109267.9|Map3k1|ENSMUSG00000021754.18|mitogen-activated protein kinase kinase kinase 1
mm39_v1_chr1_-_74163575_74163626	0.06207186595521225	AGCUUAU	ENSMUST00000169786.8|Tns1|ENSMUSG00000055322.17|tensin 1	ENSMUST00000212888.2|Tns1|ENSMUSG00000055322.17|tensin 1	ENSMUST00000191104.7|Tns1|ENSMUSG00000055322.17|tensin 1
mm39_v1_chr3_+_135144202_135144241	0.05494502790691032	AGCUUAU	ENSMUST00000166033.6|Ube2d3|ENSMUSG00000078578.10|ubiquitin-conjugating enzyme E2D 3
mm39_v1_chr2_-_104324745_104324809	0.05245530909976003	AGCUUAU	ENSMUST00000028600.14|Hipk3|ENSMUSG00000027177.15|homeodomain interacting protein kinase 3
mm39_v1_chr9_-_116004265_116004333	0.05182805775988812	AGCUUAU	ENSMUST00000061101.12|Tgfbr2|ENSMUSG00000032440.14|transforming growth factor, beta receptor II
mm39_v1_chr6_-_129484070_129484134	0.05091576661601457	AGCUUAU	ENSMUST00000183258.8|Olr1|ENSMUSG00000030162.15|oxidized low density lipoprotein (lectin-like) receptor 1	ENSMUST00000182784.4|Olr1|ENSMUSG00000030162.15|oxidized low density lipoprotein (lectin-like) receptor 1	ENSMUST00000032265.13|Olr1|ENSMUSG00000030162.15|oxidized low density lipoprotein (lectin-like) receptor 1	ENSMUST00000162815.2|Olr1|ENSMUSG00000030162.15|oxidized low density lipoprotein (lectin-like) receptor 1
mm39_v1_chr5_-_135423353_135423412	0.04571399329231156	AGCUUAU	ENSMUST00000111171.6|Pom121|ENSMUSG00000053293.10|nuclear pore membrane protein 121
mm39_v1_chr9_-_85209162_85209183	0.04410590938060688	AGCUUAU	ENSMUST00000034802.15|Tent5a|ENSMUSG00000032265.15|terminal nucleotidyltransferase 5A
mm39_v1_chr2_-_102731691_102732010	0.04075866746825823	AGCUUAU	ENSMUST00000111192.3|Cd44|ENSMUSG00000005087.18|CD44 antigen	ENSMUST00000111190.9|Cd44|ENSMUSG00000005087.18|CD44 antigen	ENSMUST00000111198.9|Cd44|ENSMUSG00000005087.18|CD44 antigen	ENSMUST00000111191.9|Cd44|ENSMUSG00000005087.18|CD44 antigen	ENSMUST00000060516.14|Cd44|ENSMUSG00000005087.18|CD44 antigen	ENSMUST00000099673.9|Cd44|ENSMUSG00000005087.18|CD44 antigen	ENSMUST00000005218.15|Cd44|ENSMUSG00000005087.18|CD44 antigen	ENSMUST00000111194.8|Cd44|ENSMUSG00000005087.18|CD44 antigen
mm39_v1_chr3_+_60408600_60408663	0.03541767704616465	AGCUUAU	ENSMUST00000099087.8|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1
mm39_v1_chr6_+_146992877_146993036	0.03534720641883361	AGCUUAU	ENSMUST00000036003.8|Klhl42|ENSMUSG00000040102.11|kelch-like 42
mm39_v1_chr2_+_48704121_48704187	0.03485421053167562	AGCUUAU	ENSMUST00000063886.4|Acvr2a|ENSMUSG00000052155.6|activin receptor IIA
mm39_v1_chrX_+_41238193_41238289	0.032757348205421935	AGCUUAU	ENSMUST00000115073.9|Stag2|ENSMUSG00000025862.15|stromal antigen 2	ENSMUST00000115072.8|Stag2|ENSMUSG00000025862.15|stromal antigen 2
mm39_v1_chr14_-_21102487_21102592	0.031061393762298873	AGCUUAU	ENSMUST00000154460.8|Ap3m1|ENSMUSG00000021824.14|adaptor-related protein complex 3, mu 1 subunit	ENSMUST00000130291.8|Ap3m1|ENSMUSG00000021824.14|adaptor-related protein complex 3, mu 1 subunit
mm39_v1_chrX_+_159945740_159945771	0.030983279596868925	AGCUUAU	ENSMUST00000074802.12|Scml2|ENSMUSG00000000037.18|Scm polycomb group protein like 2	ENSMUST00000019101.11|Scml2|ENSMUSG00000000037.18|Scm polycomb group protein like 2	ENSMUST00000112345.8|Scml2|ENSMUSG00000000037.18|Scm polycomb group protein like 2
mm39_v1_chr5_+_16758777_16758795	0.030813683170768907	AGCUUAU	ENSMUST00000030683.8|Hgf|ENSMUSG00000028864.8|hepatocyte growth factor
mm39_v1_chr11_+_60308077_60308127	0.028886919799405116	AGCUUAU	ENSMUST00000070681.7|Gid4|ENSMUSG00000018415.15|GID complex subunit 4, VID24 homolog
mm39_v1_chr5_-_136596299_136596390	0.028775953557734657	AGCUUAU	ENSMUST00000004097.16|Cux1|ENSMUSG00000029705.18|cut-like homeobox 1
mm39_v1_chr6_-_39183712_39183769	0.028710748209107895	AGCUUAU	ENSMUST00000002305.9|Kdm7a|ENSMUSG00000042599.9|lysine (K)-specific demethylase 7A
mm39_v1_chr1_+_59802543_59802559	0.026888508871834516	AGCUUAU	ENSMUST00000087435.7|Bmpr2|ENSMUSG00000067336.7|bone morphogenetic protein receptor, type II (serine/threonine kinase)
mm39_v1_chr2_+_65676111_65676142	0.026553085285232533	AGCUUAU	ENSMUST00000122912.8|Csrnp3|ENSMUSG00000044647.17|cysteine-serine-rich nuclear protein 3
mm39_v1_chr13_-_115238427_115238520	0.026483788916809272	AGCUUAU	ENSMUST00000224997.2|Gm49395|ENSMUSG00000114470.2|predicted gene, 49395	ENSMUST00000061673.9|Itga1|ENSMUSG00000042284.11|integrin alpha 1
mm39_v1_chr14_-_4808744_4808823	0.025314969865859648	AGCUUAU	ENSMUST00000022303.17|Thrb|ENSMUSG00000021779.20|thyroid hormone receptor beta	ENSMUST00000091471.12|Thrb|ENSMUSG00000021779.20|thyroid hormone receptor beta
mm39_v1_chr1_-_134006847_134006862	0.024347357419543712	AGCUUAU	ENSMUST00000020692.7|Btg2|ENSMUSG00000020423.7|BTG anti-proliferation factor 2
mm39_v1_chr11_-_118977047_118977075	0.02352268353156761	AGCUUAU	ENSMUST00000026665.8|Cbx4|ENSMUSG00000039989.8|chromobox 4
mm39_v1_chr1_+_185187000_185187045	0.023059800648230506	AGCUUAU	ENSMUST00000061093.7|Slc30a10|ENSMUSG00000026614.8|solute carrier family 30, member 10
mm39_v1_chr5_-_129030367_129030550	0.0228136451196396	AGCUUAU	ENSMUST00000111346.6|Rimbp2|ENSMUSG00000029420.15|RIMS binding protein 2	ENSMUST00000200470.5|Rimbp2|ENSMUSG00000029420.15|RIMS binding protein 2
mm39_v1_chr9_-_70411000_70411092	0.022041030276966557	AGCUUAU	ENSMUST00000034739.12|Rnf111|ENSMUSG00000032217.14|ring finger 111
mm39_v1_chr16_+_11140740_11140775	0.02051401071138027	AGCUUAU	ENSMUST00000180792.8|Snx29|ENSMUSG00000071669.15|sorting nexin 29
mm39_v1_chr2_-_12306722_12306734	0.019872285195015126	AGCUUAU	ENSMUST00000028106.11|Itga8|ENSMUSG00000026768.11|integrin alpha 8
mm39_v1_chr2_-_58247764_58247907	0.01913472301639151	AGCUUAU	ENSMUST00000112608.9|Acvr1c|ENSMUSG00000026834.14|activin A receptor, type IC	ENSMUST00000112607.3|Acvr1c|ENSMUSG00000026834.14|activin A receptor, type IC	ENSMUST00000028178.14|Acvr1c|ENSMUSG00000026834.14|activin A receptor, type IC
mm39_v1_chr17_+_8144822_8144838	0.01884641710838961	AGCUUAU	ENSMUST00000036370.8|Tagap|ENSMUSG00000033450.9|T cell activation Rho GTPase activating protein
mm39_v1_chr15_+_80595486_80595541	0.01863780260142748	AGCUUAU	ENSMUST00000067689.9|Tnrc6b|ENSMUSG00000047888.11|trinucleotide repeat containing 6b
mm39_v1_chr9_+_32027335_32027432	0.01777149295519308	AGCUUAU	ENSMUST00000174641.8|Arhgap32|ENSMUSG00000041444.15|Rho GTPase activating protein 32
mm39_v1_chr3_+_136375839_136375948	0.017668294580563418	AGCUUAU	ENSMUST00000070198.14|Ppp3ca|ENSMUSG00000028161.18|protein phosphatase 3, catalytic subunit, alpha isoform
mm39_v1_chr4_-_133695204_133695263	0.017633889100283122	AGCUUAU	ENSMUST00000100472.10|Hmgn2|ENSMUSG00000003038.16|high mobility group nucleosomal binding domain 2	ENSMUST00000136327.2|Hmgn2|ENSMUSG00000003038.16|high mobility group nucleosomal binding domain 2
mm39_v1_chr6_-_99243455_99243501	0.01738922682158221	AGCUUAU	ENSMUST00000113326.9|Foxp1|ENSMUSG00000030067.18|forkhead box P1
mm39_v1_chr1_+_130645056_130645070	0.015982041046587632	AGCUUAU	ENSMUST00000049813.6|Yod1|ENSMUSG00000046404.6|YOD1 deubiquitinase
mm39_v1_chr2_-_148250024_148250108	0.015940002366509273	AGCUUAU	ENSMUST00000099270.5|Thbd|ENSMUSG00000074743.5|thrombomodulin
mm39_v1_chr18_+_35904541_35904655	0.015658360451627263	AGCUUAU	ENSMUST00000170693.9|Ube2d2a|ENSMUSG00000091896.9|ubiquitin-conjugating enzyme E2D 2A	ENSMUST00000237984.2|Ube2d2a|ENSMUSG00000091896.9|ubiquitin-conjugating enzyme E2D 2A	ENSMUST00000167406.2|Ube2d2a|ENSMUSG00000091896.9|ubiquitin-conjugating enzyme E2D 2A
mm39_v1_chr17_+_24707711_24707849	0.015440334005406182	AGCUUAU	ENSMUST00000024958.9|Caskin1|ENSMUSG00000033597.10|CASK interacting protein 1	ENSMUST00000234717.2|Caskin1|ENSMUSG00000033597.10|CASK interacting protein 1
mm39_v1_chr4_-_155306992_155307049	0.01537420207847215	AGCUUAU	ENSMUST00000084103.10|Ski|ENSMUSG00000029050.16|ski sarcoma viral oncogene homolog (avian)	ENSMUST00000030917.6|Ski|ENSMUSG00000029050.16|ski sarcoma viral oncogene homolog (avian)
mm39_v1_chr10_-_61288437_61288589	0.014876111936173232	AGCUUAU	ENSMUST00000167087.2|Eif4ebp2|ENSMUSG00000020091.16|eukaryotic translation initiation factor 4E binding protein 2	ENSMUST00000020288.15|Eif4ebp2|ENSMUSG00000020091.16|eukaryotic translation initiation factor 4E binding protein 2
mm39_v1_chr11_-_29975916_29976033	0.012872665648959098	AGCUUAU	ENSMUST00000058902.6|Eml6|ENSMUSG00000044072.15|echinoderm microtubule associated protein like 6
mm39_v1_chr19_+_6326755_6326823	0.01222126325195789	AGCUUAU	ENSMUST00000025684.4|Ehd1|ENSMUSG00000024772.10|EH-domain containing 1
mm39_v1_chr2_-_117173190_117173303	0.012202683223932136	AGCUUAU	ENSMUST00000173541.8|Rasgrp1|ENSMUSG00000027347.19|RAS guanyl releasing protein 1	ENSMUST00000172901.8|Rasgrp1|ENSMUSG00000027347.19|RAS guanyl releasing protein 1	ENSMUST00000173252.2|Rasgrp1|ENSMUSG00000027347.19|RAS guanyl releasing protein 1
mm39_v1_chr11_+_60822859_60822921	0.0121308234171303	AGCUUAU	ENSMUST00000019076.10|Map2k3|ENSMUSG00000018932.10|mitogen-activated protein kinase kinase 3
mm39_v1_chr4_-_70453140_70453224	0.011665153654869876	AGCUUAU	ENSMUST00000107359.9|Megf9|ENSMUSG00000039270.10|multiple EGF-like-domains 9
mm39_v1_chr1_-_178165223_178165362	0.011199573689868628	AGCUUAU	ENSMUST00000037748.9|Hnrnpu|ENSMUSG00000039630.11|heterogeneous nuclear ribonucleoprotein U
mm39_v1_chr11_+_85723377_85723377	0.011003920615917278	AGCUUAU	ENSMUST00000000095.7|Tbx2|ENSMUSG00000000093.7|T-box 2
mm39_v1_chr1_-_156767123_156767186	0.010143103140204076	AGCUUAU	ENSMUST00000189316.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2	ENSMUST00000190648.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2	ENSMUST00000172057.8|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2	ENSMUST00000191605.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2
mm39_v1_chr7_+_120276801_120276868	0.009986149044305538	AGCUUAU	ENSMUST00000208454.2|Mosmo|ENSMUSG00000046096.8|modulator of smoothened	ENSMUST00000060175.8|Mosmo|ENSMUSG00000046096.8|modulator of smoothened
mm39_v1_chr6_-_86503178_86503303	0.009959039034924148	AGCUUAU	ENSMUST00000053015.7|Pcbp1|ENSMUSG00000051695.7|poly(rC) binding protein 1
mm39_v1_chr17_-_7228555_7228555	0.009668951879062995	AGCUUAU	ENSMUST00000063683.8|Tagap1|ENSMUSG00000052031.9|T cell activation GTPase activating protein 1
mm39_v1_chr6_+_14901343_14901363	0.009456939375026856	AGCUUAU	ENSMUST00000115477.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chrX_+_158038778_158038894	0.00901684185298216	AGCUUAU	ENSMUST00000126686.8|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3	ENSMUST00000033671.13|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3
mm39_v1_chr3_-_56091096_56091122	0.0086994363498344	AGCUUAU	ENSMUST00000029374.8|Nbea|ENSMUSG00000027799.13|neurobeachin
mm39_v1_chr7_+_65511777_65511888	0.008683300841398185	AGCUUAU	ENSMUST00000055576.12|Pcsk6|ENSMUSG00000030513.15|proprotein convertase subtilisin/kexin type 6	ENSMUST00000098391.11|Pcsk6|ENSMUSG00000030513.15|proprotein convertase subtilisin/kexin type 6
mm39_v1_chr16_-_67417768_67417810	0.008410914443779843	AGCUUAU	ENSMUST00000114292.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2	ENSMUST00000120898.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2
mm39_v1_chr4_-_82423985_82424044	0.008228555423797447	AGCUUAU	ENSMUST00000107245.9|Nfib|ENSMUSG00000008575.18|nuclear factor I/B	ENSMUST00000107246.2|Nfib|ENSMUSG00000008575.18|nuclear factor I/B
mm39_v1_chrX_+_159173680_159173726	0.007705942459418773	AGCUUAU	ENSMUST00000112408.9|Adgrg2|ENSMUSG00000031298.16|adhesion G protein-coupled receptor G2	ENSMUST00000112402.8|Adgrg2|ENSMUSG00000031298.16|adhesion G protein-coupled receptor G2	ENSMUST00000112401.8|Adgrg2|ENSMUSG00000031298.16|adhesion G protein-coupled receptor G2	ENSMUST00000112400.8|Adgrg2|ENSMUSG00000031298.16|adhesion G protein-coupled receptor G2	ENSMUST00000112405.9|Adgrg2|ENSMUSG00000031298.16|adhesion G protein-coupled receptor G2	ENSMUST00000112404.9|Adgrg2|ENSMUSG00000031298.16|adhesion G protein-coupled receptor G2	ENSMUST00000146805.8|Adgrg2|ENSMUSG00000031298.16|adhesion G protein-coupled receptor G2
mm39_v1_chr11_-_100541519_100541575	0.0070682854016728466	AGCUUAU	ENSMUST00000103119.10|Zfp385c|ENSMUSG00000014198.16|zinc finger protein 385C
mm39_v1_chr4_+_139302009_139302036	0.007029429466822864	AGCUUAU	ENSMUST00000174078.2|Iffo2|ENSMUSG00000041025.16|intermediate filament family orphan 2
mm39_v1_chr4_+_8691303_8691381	0.006911925516331296	AGCUUAU	ENSMUST00000051558.10|Chd7|ENSMUSG00000041235.13|chromodomain helicase DNA binding protein 7
mm39_v1_chr4_-_141518202_141518252	0.006701895926775433	AGCUUAU	ENSMUST00000038014.11|Dnajc16|ENSMUSG00000040697.11|DnaJ heat shock protein family (Hsp40) member C16	ENSMUST00000153880.2|Dnajc16|ENSMUSG00000040697.11|DnaJ heat shock protein family (Hsp40) member C16
mm39_v1_chr14_+_63843943_63843978	0.006649791279586615	AGCUUAU	ENSMUST00000119973.3|Xkr6|ENSMUSG00000035067.10|X-linked Kx blood group related 6
mm39_v1_chr15_+_102378966_102379220	0.006450544023971171	AGCUUAU	ENSMUST00000077037.13|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229102.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229618.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229275.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000231089.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229802.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229854.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000108838.5|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2
mm39_v1_chr17_-_88372671_88372719	0.006230503005311172	AGCUUAU	ENSMUST00000235112.2|Fbxo11|ENSMUSG00000005371.16|F-box protein 11	ENSMUST00000005504.15|Fbxo11|ENSMUSG00000005371.16|F-box protein 11
mm39_v1_chr5_-_50216249_50216352	0.006188319816565537	AGCUUAU	ENSMUST00000030971.7|Adgra3|ENSMUSG00000029090.13|adhesion G protein-coupled receptor A3
mm39_v1_chr2_-_120439764_120439798	0.005795859497990959	AGCUUAU	ENSMUST00000102496.8|Lrrc57|ENSMUSG00000027286.17|leucine rich repeat containing 57
mm39_v1_chr5_+_118307754_118307813	0.005675667761318618	AGCUUAU	ENSMUST00000054836.7|Hrk|ENSMUSG00000046607.7|harakiri, BCL2 interacting protein (contains only BH3 domain)
mm39_v1_chr3_-_51184895_51184996	0.005166307129186109	AGCUUAU	ENSMUST00000108051.8|Elf2|ENSMUSG00000037174.19|E74-like factor 2	ENSMUST00000108053.9|Elf2|ENSMUSG00000037174.19|E74-like factor 2
mm39_v1_chr7_-_141649003_141649043	0.0048122683688195745	AGCUUAU	ENSMUST00000039926.10|Dusp8|ENSMUSG00000037887.12|dual specificity phosphatase 8
mm39_v1_chr3_+_97920819_97920863	0.004650262169750455	AGCUUAU	ENSMUST00000079812.8|Notch2|ENSMUSG00000027878.12|notch 2
mm39_v1_chr2_+_69727563_69727591	0.004316082311714593	AGCUUAU	ENSMUST00000055758.16|Ubr3|ENSMUSG00000044308.18|ubiquitin protein ligase E3 component n-recognin 3	ENSMUST00000112251.9|Ubr3|ENSMUSG00000044308.18|ubiquitin protein ligase E3 component n-recognin 3
mm39_v1_chr6_-_14755249_14755285	0.004264572828486953	AGCUUAU	ENSMUST00000045096.6|Ppp1r3a|ENSMUSG00000042717.6|protein phosphatase 1, regulatory subunit 3A
mm39_v1_chr1_-_17168063_17168113	0.00412224158320439	AGCUUAU	ENSMUST00000038382.5|Jph1|ENSMUSG00000042686.6|junctophilin 1
mm39_v1_chr14_+_30741082_30741114	0.0040304443583137894	AGCUUAU	ENSMUST00000112098.11|Pbrm1|ENSMUSG00000042323.18|polybromo 1	ENSMUST00000112095.8|Pbrm1|ENSMUSG00000042323.18|polybromo 1	ENSMUST00000112106.8|Pbrm1|ENSMUSG00000042323.18|polybromo 1	ENSMUST00000146325.8|Pbrm1|ENSMUSG00000042323.18|polybromo 1
mm39_v1_chr4_-_14826587_14826606	0.0038202206777289654	AGCUUAU	ENSMUST00000117268.9|Otud6b|ENSMUSG00000040550.18|OTU domain containing 6B	ENSMUST00000236953.2|Otud6b|ENSMUSG00000040550.18|OTU domain containing 6B
mm39_v1_chr3_+_137573436_137573677	0.003789774439536871	AGCUUAU	ENSMUST00000090178.10|Dnajb14|ENSMUSG00000074212.8|DnaJ heat shock protein family (Hsp40) member B14
mm39_v1_chr5_+_13449276_13449350	0.003771326641582672	AGCUUAU	ENSMUST00000030714.9|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	ENSMUST00000141968.2|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm39_v1_chr19_+_41471067_41471128	0.003705963205851007	AGCUUAU	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr15_-_43034205_43034227	0.0036392551266395414	AGCUUAU	ENSMUST00000063492.8|Rspo2|ENSMUSG00000051920.8|R-spondin 2	ENSMUST00000226810.2|Rspo2|ENSMUSG00000051920.8|R-spondin 2
mm39_v1_chr3_+_137770813_137770839	0.0036048788637008324	AGCUUAU	ENSMUST00000163080.3|1110002E22Rik|ENSMUSG00000090066.3|RIKEN cDNA 1110002E22 gene
mm39_v1_chr1_+_140173787_140173945	0.003591076095848901	AGCUUAU	ENSMUST00000239229.2|Kcnt2|ENSMUSG00000052726.17|potassium channel, subfamily T, member 2	ENSMUST00000120709.8|Kcnt2|ENSMUSG00000052726.17|potassium channel, subfamily T, member 2	ENSMUST00000120796.8|Kcnt2|ENSMUSG00000052726.17|potassium channel, subfamily T, member 2	ENSMUST00000119786.8|Kcnt2|ENSMUSG00000052726.17|potassium channel, subfamily T, member 2
mm39_v1_chr10_+_67815395_67815408	0.0034389925642214904	AGCUUAU	ENSMUST00000118160.8|Rtkn2|ENSMUSG00000037846.19|rhotekin 2
mm39_v1_chr4_+_43875524_43875558	0.003320702403879877	AGCUUAU	ENSMUST00000030198.7|Reck|ENSMUSG00000028476.14|reversion-inducing-cysteine-rich protein with kazal motifs
mm39_v1_chr4_+_99952988_99953064	0.0032012072906596974	AGCUUAU	ENSMUST00000039630.6|Ror1|ENSMUSG00000035305.6|receptor tyrosine kinase-like orphan receptor 1
mm39_v1_chr11_-_82070629_82070646	0.00316407050718108	AGCUUAU	ENSMUST00000108189.9|Ccl1|ENSMUSG00000020702.14|chemokine (C-C motif) ligand 1	ENSMUST00000021043.5|Ccl1|ENSMUSG00000020702.14|chemokine (C-C motif) ligand 1
mm39_v1_chr6_+_71470833_71470902	0.0031610514694042735	AGCUUAU	ENSMUST00000064637.11|Rnf103|ENSMUSG00000052656.13|ring finger protein 103	ENSMUST00000114178.8|Rnf103|ENSMUSG00000052656.13|ring finger protein 103
mm39_v1_chr1_-_182169150_182169190	0.002958266472538597	AGCUUAU	ENSMUST00000051431.10|Fbxo28|ENSMUSG00000047539.10|F-box protein 28
mm39_v1_chr5_+_123280250_123280350	0.002785279787519787	AGCUUAU	ENSMUST00000174836.8|Setd1b|ENSMUSG00000038384.17|SET domain containing 1B	ENSMUST00000163030.9|Setd1b|ENSMUSG00000038384.17|SET domain containing 1B
mm39_v1_chr10_+_7556948_7556990	0.0026636050404360598	AGCUUAU	ENSMUST00000165952.9|Lats1|ENSMUSG00000040021.14|large tumor suppressor
mm39_v1_chr12_+_83678987_83679099	0.00257233637173057	AGCUUAU	ENSMUST00000048155.16|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000182618.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000183154.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000182036.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000182347.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25
mm39_v1_chr15_+_85619958_85620010	0.002514918007454876	AGCUUAU	ENSMUST00000109422.8|Ppara|ENSMUSG00000022383.14|peroxisome proliferator activated receptor alpha
mm39_v1_chr12_+_9624437_9624448	0.002430067444068326	AGCUUAU	ENSMUST00000057021.9|Osr1|ENSMUSG00000048387.9|odd-skipped related transcription factor 1
mm39_v1_chr5_-_103247920_103247954	0.002312970113283494	AGCUUAU	ENSMUST00000112848.8|Mapk10|ENSMUSG00000046709.19|mitogen-activated protein kinase 10
mm39_v1_chr3_-_89820451_89820509	0.0019476679476089118	AGCUUAU	ENSMUST00000029559.7|Il6ra|ENSMUSG00000027947.12|interleukin 6 receptor, alpha	ENSMUST00000197679.5|Il6ra|ENSMUSG00000027947.12|interleukin 6 receptor, alpha
mm39_v1_chr14_-_39194782_39195045	0.0017978211770296882	AGCUUAU	ENSMUST00000168810.9|Nrg3|ENSMUSG00000041014.18|neuregulin 3	ENSMUST00000173780.2|Nrg3|ENSMUSG00000041014.18|neuregulin 3	ENSMUST00000166968.9|Nrg3|ENSMUSG00000041014.18|neuregulin 3
mm39_v1_chr17_+_26934617_26934698	0.0015974636407557416	AGCUUAU	ENSMUST00000062519.14|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000144221.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000142539.8|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000151681.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor
mm39_v1_chr6_-_143892814_143892837	0.0015639579764412984	AGCUUAU	ENSMUST00000124233.7|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5	ENSMUST00000144289.4|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5	ENSMUST00000111748.8|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5
mm39_v1_chr5_+_147367237_147367355	0.0015314573349851516	AGCUUAU	ENSMUST00000176600.8|Pan3|ENSMUSG00000029647.16|PAN3 poly(A) specific ribonuclease subunit
mm39_v1_chr9_-_52590686_52590737	0.0013677845822563867	AGCUUAU	ENSMUST00000098768.3|AI593442|ENSMUSG00000078307.4|expressed sequence AI593442	ENSMUST00000213843.2|AI593442|ENSMUSG00000078307.4|expressed sequence AI593442
mm39_v1_chr9_-_8004586_8004632	0.0012290824355737306	AGCUUAU	ENSMUST00000086580.12|Yap1|ENSMUSG00000053110.14|yes-associated protein 1	ENSMUST00000065353.13|Yap1|ENSMUSG00000053110.14|yes-associated protein 1
mm39_v1_chr6_-_126621751_126621768	0.0012129115753719954	AGCUUAU	ENSMUST00000055168.5|Kcna1|ENSMUSG00000047976.5|potassium voltage-gated channel, shaker-related subfamily, member 1
mm39_v1_chr2_-_131194754_131194806	0.0011468563726610072	AGCUUAU	ENSMUST00000059372.11|Rnf24|ENSMUSG00000048911.16|ring finger protein 24
mm39_v1_chr10_-_102864904_102864915	0.0010271763202512856	AGCUUAU	ENSMUST00000167156.9|Alx1|ENSMUSG00000036602.15|ALX homeobox 1
mm39_v1_chr1_-_77491683_77491779	0.000997249514143497	AGCUUAU	ENSMUST00000186930.2|Epha4|ENSMUSG00000026235.15|Eph receptor A4	ENSMUST00000027451.13|Epha4|ENSMUSG00000026235.15|Eph receptor A4	ENSMUST00000188797.7|Epha4|ENSMUSG00000026235.15|Eph receptor A4
mm39_v1_chrX_+_134739783_134739824	0.0009901156721361045	AGCUUAU	ENSMUST00000173804.8|Gprasp2|ENSMUSG00000072966.12|G protein-coupled receptor associated sorting protein 2	ENSMUST00000113136.8|Gprasp2|ENSMUSG00000072966.12|G protein-coupled receptor associated sorting protein 2
mm39_v1_chr5_-_37981919_37981933	0.0009567663894511558	AGCUUAU	ENSMUST00000063116.10|Msx1|ENSMUSG00000048450.11|msh homeobox 1
mm39_v1_chr18_+_35695199_35695313	0.0008501511681541215	AGCUUAU	ENSMUST00000236860.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000166793.10|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000237780.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000236507.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000235960.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000237061.2|Matr3|ENSMUSG00000037236.17|matrin 3
mm39_v1_chr6_-_126143678_126143708	0.0008340600906141306	AGCUUAU	ENSMUST00000112244.8|Ntf3|ENSMUSG00000049107.14|neurotrophin 3
mm39_v1_chr7_-_115637970_115637985	0.0007096556836601992	AGCUUAU	ENSMUST00000166877.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr4_-_41695442_41695442	0.0006774808201816169	AGCUUAU	ENSMUST00000102961.10|Cntfr|ENSMUSG00000028444.18|ciliary neurotrophic factor receptor
mm39_v1_chr10_+_42637479_42637492	0.000605910351551047	AGCUUAU	ENSMUST00000019937.5|Sec63|ENSMUSG00000019802.14|SEC63-like (S. cerevisiae)
