mm39_v1_chr8_-_78451055_78451113	0.2750160566141393	CAGUCCA	ENSMUST00000034029.8|Ednra|ENSMUSG00000031616.8|endothelin receptor type A
mm39_v1_chr11_-_87878301_87878364	0.17774778433726754	CAGUCCA	ENSMUST00000020775.9|Dynll2|ENSMUSG00000020483.15|dynein light chain LC8-type 2
mm39_v1_chr8_-_58106057_58106074	0.16027994143435068	CAGUCCA	ENSMUST00000034021.12|Galnt7|ENSMUSG00000031608.14|polypeptide N-acetylgalactosaminyltransferase 7
mm39_v1_chr17_+_29312737_29312755	0.14283750991432118	CAGUCCA	ENSMUST00000023829.8|Cdkn1a|ENSMUSG00000023067.15|cyclin-dependent kinase inhibitor 1A (P21)	ENSMUST00000233296.2|Cdkn1a|ENSMUSG00000023067.15|cyclin-dependent kinase inhibitor 1A (P21)
mm39_v1_chr9_+_56902172_56902207	0.14181829120225964	CAGUCCA	ENSMUST00000034832.8|Ptpn9|ENSMUSG00000032290.8|protein tyrosine phosphatase, non-receptor type 9
mm39_v1_chr8_-_85573489_85573563	0.13423395850279257	CAGUCCA	ENSMUST00000003912.7|Calr|ENSMUSG00000003814.9|calreticulin
mm39_v1_chr10_+_82821304_82821338	0.13144976759000634	CAGUCCA	ENSMUST00000040110.8|Chst11|ENSMUSG00000034612.8|carbohydrate sulfotransferase 11
mm39_v1_chr3_+_137570334_137570374	0.12948301781687344	CAGUCCA	ENSMUST00000174561.8|H2az1|ENSMUSG00000037894.14|H2A.Z variant histone 1	ENSMUST00000173790.8|H2az1|ENSMUSG00000037894.14|H2A.Z variant histone 1
mm39_v1_chr11_+_29642937_29643001	0.1283552225469876	CAGUCCA	ENSMUST00000102843.10|Rtn4|ENSMUSG00000020458.17|reticulon 4	ENSMUST00000102842.10|Rtn4|ENSMUSG00000020458.17|reticulon 4	ENSMUST00000078830.11|Rtn4|ENSMUSG00000020458.17|reticulon 4	ENSMUST00000170731.8|Rtn4|ENSMUSG00000020458.17|reticulon 4
mm39_v1_chr19_+_44551280_44551318	0.12307312256497327	CAGUCCA	ENSMUST00000040455.5|Hif1an|ENSMUSG00000036450.5|hypoxia-inducible factor 1, alpha subunit inhibitor
mm39_v1_chr2_+_29951859_29951880	0.11917757715940855	CAGUCCA	ENSMUST00000102866.10|Set|ENSMUSG00000054766.14|SET nuclear oncogene
mm39_v1_chr15_-_79571977_79572120	0.11738043088656994	CAGUCCA	ENSMUST00000023061.7|Josd1|ENSMUSG00000022426.7|Josephin domain containing 1
mm39_v1_chrX_-_52459347_52459379	0.1128725292537731	CAGUCCA	ENSMUST00000096447.9|Mospd1|ENSMUSG00000023074.12|motile sperm domain containing 1	ENSMUST00000023836.4|Mospd1|ENSMUSG00000023074.12|motile sperm domain containing 1
mm39_v1_chr12_+_3857001_3857064	0.10775990198272545	CAGUCCA	ENSMUST00000020991.15|Dnmt3a|ENSMUSG00000020661.16|DNA methyltransferase 3A	ENSMUST00000172509.8|Dnmt3a|ENSMUSG00000020661.16|DNA methyltransferase 3A
mm39_v1_chr1_-_34882131_34882148	0.1076299002883463	CAGUCCA	ENSMUST00000167518.8|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B	ENSMUST00000047534.12|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B
mm39_v1_chr11_-_5492175_5492221	0.10419203278431044	CAGUCCA	ENSMUST00000020776.5|Ccdc117|ENSMUSG00000020482.5|coiled-coil domain containing 117
mm39_v1_chr2_-_84481058_84481093	0.10257911299783681	CAGUCCA	ENSMUST00000111670.9|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111697.9|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111696.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111678.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111690.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111695.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111677.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111698.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000099941.9|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111676.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111694.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111675.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111689.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111687.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111692.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111685.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111686.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111688.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111693.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111684.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1
mm39_v1_chr18_-_36877571_36877610	0.10024780956151606	CAGUCCA	ENSMUST00000014438.5|Ndufa2|ENSMUSG00000014294.5|NADH:ubiquinone oxidoreductase subunit A2
mm39_v1_chr9_+_65368207_65368276	0.09093136360788938	CAGUCCA	ENSMUST00000034955.8|Spg21|ENSMUSG00000032388.8|SPG21, maspardin	ENSMUST00000213957.2|Spg21|ENSMUSG00000032388.8|SPG21, maspardin
mm39_v1_chr18_+_80250007_80250082	0.08621676227161311	CAGUCCA	ENSMUST00000145963.9|Txnl4a|ENSMUSG00000057130.13|thioredoxin-like 4A	ENSMUST00000125127.8|Gm16286|ENSMUSG00000024571.16|predicted gene 16286	ENSMUST00000025464.8|Txnl4a|ENSMUSG00000057130.13|thioredoxin-like 4A	ENSMUST00000025463.14|Gm16286|ENSMUSG00000024571.16|predicted gene 16286
mm39_v1_chr2_+_120807498_120807588	0.08308646748684537	CAGUCCA	ENSMUST00000067582.14|Tmem62|ENSMUSG00000054484.15|transmembrane protein 62
mm39_v1_chr13_-_38178059_38178193	0.08045922509453542	CAGUCCA	ENSMUST00000225319.2|Ssr1|ENSMUSG00000021427.11|signal sequence receptor, alpha	ENSMUST00000225246.2|Ssr1|ENSMUSG00000021427.11|signal sequence receptor, alpha	ENSMUST00000021864.8|Ssr1|ENSMUSG00000021427.11|signal sequence receptor, alpha
mm39_v1_chr8_+_3565377_3565397	0.0804568348942243	CAGUCCA	ENSMUST00000111070.4|Pnpla6|ENSMUSG00000004565.16|patatin-like phospholipase domain containing 6	ENSMUST00000004681.14|Pnpla6|ENSMUSG00000004565.16|patatin-like phospholipase domain containing 6	ENSMUST00000208310.2|Pnpla6|ENSMUSG00000004565.16|patatin-like phospholipase domain containing 6
mm39_v1_chr2_-_119617985_119618018	0.0800331480193208	CAGUCCA	ENSMUST00000110793.8|Rpap1|ENSMUSG00000034032.16|RNA polymerase II associated protein 1	ENSMUST00000099529.9|Rpap1|ENSMUSG00000034032.16|RNA polymerase II associated protein 1	ENSMUST00000048493.12|Rpap1|ENSMUSG00000034032.16|RNA polymerase II associated protein 1
mm39_v1_chr15_+_102378966_102379220	0.07997164836345433	CAGUCCA	ENSMUST00000077037.13|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229102.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229618.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229275.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000231089.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229802.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229854.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000108838.5|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2
mm39_v1_chr10_+_61516078_61516146	0.0796263651953649	CAGUCCA	ENSMUST00000220372.2|Sar1a|ENSMUSG00000020088.11|secretion associated Ras related GTPase 1A	ENSMUST00000020285.10|Sar1a|ENSMUSG00000020088.11|secretion associated Ras related GTPase 1A	ENSMUST00000219506.2|Sar1a|ENSMUSG00000020088.11|secretion associated Ras related GTPase 1A	ENSMUST00000218474.2|Sar1a|ENSMUSG00000020088.11|secretion associated Ras related GTPase 1A
mm39_v1_chr2_+_30842966_30843028	0.07654064476277332	CAGUCCA	ENSMUST00000028199.12|Tor1b|ENSMUSG00000026848.15|torsin family 1, member B
mm39_v1_chr11_-_115405200_115405219	0.07560094135354929	CAGUCCA	ENSMUST00000021083.7|Jpt1|ENSMUSG00000020737.13|Jupiter microtubule associated homolog 1
mm39_v1_chr7_-_45116316_45116327	0.07506530411330935	CAGUCCA	ENSMUST00000033093.10|Bax|ENSMUSG00000003873.12|BCL2-associated X protein
mm39_v1_chr7_+_130179063_130179214	0.07492605618909351	CAGUCCA	ENSMUST00000207918.2|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2	ENSMUST00000215492.2|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2	ENSMUST00000084513.12|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2	ENSMUST00000059145.14|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2
mm39_v1_chr4_+_15265798_15265831	0.07385304771678886	CAGUCCA	ENSMUST00000062684.9|Tmem64|ENSMUSG00000043252.9|transmembrane protein 64
mm39_v1_chr4_-_129566505_129566567	0.06998174437804139	CAGUCCA	ENSMUST00000102590.11|Kpna6|ENSMUSG00000003731.14|karyopherin (importin) alpha 6
mm39_v1_chr9_-_99450948_99450961	0.06685449233272855	CAGUCCA	ENSMUST00000035043.12|Armc8|ENSMUSG00000032468.12|armadillo repeat containing 8
mm39_v1_chr13_-_101904662_101904725	0.06596051461360496	CAGUCCA	ENSMUST00000055518.13|Pik3r1|ENSMUSG00000041417.16|phosphoinositide-3-kinase regulatory subunit 1
mm39_v1_chr11_-_120524362_120524431	0.06358989134369933	CAGUCCA	ENSMUST00000058162.14|Mafg|ENSMUSG00000051510.14|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
mm39_v1_chr16_-_32065972_32065997	0.06270263300575525	CAGUCCA	ENSMUST00000042732.6|Fbxo45|ENSMUSG00000035764.6|F-box protein 45
mm39_v1_chr4_-_117539431_117539477	0.061697435168908826	CAGUCCA	ENSMUST00000102687.4|Dmap1|ENSMUSG00000009640.12|DNA methyltransferase 1-associated protein 1
mm39_v1_chr1_-_181039509_181039580	0.06158086809565227	CAGUCCA	ENSMUST00000162819.9|Wdr26|ENSMUSG00000038733.15|WD repeat domain 26	ENSMUST00000237749.2|Wdr26|ENSMUSG00000038733.15|WD repeat domain 26
mm39_v1_chr4_-_139079842_139079899	0.05902938727061577	CAGUCCA	ENSMUST00000102503.10|Mrto4|ENSMUSG00000028741.14|mRNA turnover 4, ribosome maturation factor
mm39_v1_chr4_+_126915104_126915133	0.056807756548960794	CAGUCCA	ENSMUST00000030623.8|Sfpq|ENSMUSG00000028820.14|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm39_v1_chr19_+_46316617_46316645	0.05632267862872419	CAGUCCA	ENSMUST00000026256.9|Fbxl15|ENSMUSG00000025226.12|F-box and leucine-rich repeat protein 15	ENSMUST00000177667.2|Fbxl15|ENSMUSG00000025226.12|F-box and leucine-rich repeat protein 15
mm39_v1_chr9_+_111100893_111101013	0.055068075003240145	CAGUCCA	ENSMUST00000135807.2|Epm2aip1|ENSMUSG00000046785.9|EPM2A (laforin) interacting protein 1	ENSMUST00000060711.8|Epm2aip1|ENSMUSG00000046785.9|EPM2A (laforin) interacting protein 1
mm39_v1_chr11_+_97253221_97253377	0.05498175279817539	CAGUCCA	ENSMUST00000238729.2|Socs7|ENSMUSG00000038485.7|suppressor of cytokine signaling 7	ENSMUST00000045540.4|Socs7|ENSMUSG00000038485.7|suppressor of cytokine signaling 7
mm39_v1_chr4_-_82423985_82424044	0.05471772454042434	CAGUCCA	ENSMUST00000107245.9|Nfib|ENSMUSG00000008575.18|nuclear factor I/B	ENSMUST00000107246.2|Nfib|ENSMUSG00000008575.18|nuclear factor I/B
mm39_v1_chr7_-_90106375_90106437	0.054307980738896484	CAGUCCA	ENSMUST00000032844.7|Tmem126a|ENSMUSG00000030615.13|transmembrane protein 126A
mm39_v1_chr11_-_49603501_49603555	0.05427005203116182	CAGUCCA	ENSMUST00000020624.7|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6	ENSMUST00000145353.8|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6
mm39_v1_chr3_-_143910926_143910981	0.05258439295463972	CAGUCCA	ENSMUST00000120539.8|Lmo4|ENSMUSG00000028266.18|LIM domain only 4	ENSMUST00000196264.5|Lmo4|ENSMUSG00000028266.18|LIM domain only 4
mm39_v1_chr18_-_10610048_10610146	0.05222474392719983	CAGUCCA	ENSMUST00000115864.8|Esco1|ENSMUSG00000024293.17|establishment of sister chromatid cohesion N-acetyltransferase 1	ENSMUST00000145320.2|Esco1|ENSMUSG00000024293.17|establishment of sister chromatid cohesion N-acetyltransferase 1	ENSMUST00000097670.10|Esco1|ENSMUSG00000024293.17|establishment of sister chromatid cohesion N-acetyltransferase 1
mm39_v1_chr11_+_94102255_94102280	0.048855379654882215	CAGUCCA	ENSMUST00000041589.6|Tob1|ENSMUSG00000037573.6|transducer of ErbB-2.1
mm39_v1_chr5_-_92231314_92231416	0.048609675451143246	CAGUCCA	ENSMUST00000169094.8|G3bp2|ENSMUSG00000029405.17|GTPase activating protein (SH3 domain) binding protein 2	ENSMUST00000167918.8|G3bp2|ENSMUSG00000029405.17|GTPase activating protein (SH3 domain) binding protein 2
mm39_v1_chr1_-_80318197_80318229	0.047889795993788245	CAGUCCA	ENSMUST00000163119.8|Cul3|ENSMUSG00000004364.15|cullin 3
mm39_v1_chr10_-_90959853_90959921	0.04781619209472147	CAGUCCA	ENSMUST00000170810.8|Slc25a3|ENSMUSG00000061904.13|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	ENSMUST00000076694.13|Slc25a3|ENSMUSG00000061904.13|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
mm39_v1_chr1_-_185061525_185061603	0.0458893454265352	CAGUCCA	ENSMUST00000027921.11|Iars2|ENSMUSG00000026618.12|isoleucine-tRNA synthetase 2, mitochondrial	ENSMUST00000110975.8|Iars2|ENSMUSG00000026618.12|isoleucine-tRNA synthetase 2, mitochondrial	ENSMUST00000110974.4|Iars2|ENSMUSG00000026618.12|isoleucine-tRNA synthetase 2, mitochondrial
mm39_v1_chr10_-_128383508_128383643	0.04483472353414541	CAGUCCA	ENSMUST00000152539.8|Zc3h10|ENSMUSG00000039810.12|zinc finger CCCH type containing 10	ENSMUST00000133458.2|Zc3h10|ENSMUSG00000039810.12|zinc finger CCCH type containing 10	ENSMUST00000040572.10|Zc3h10|ENSMUSG00000039810.12|zinc finger CCCH type containing 10
mm39_v1_chr18_+_34891941_34891959	0.044809982710445714	CAGUCCA	ENSMUST00000049281.12|Fam53c|ENSMUSG00000034300.18|family with sequence similarity 53, member C
mm39_v1_chr9_+_45749869_45749892	0.04427208363744941	CAGUCCA	ENSMUST00000078111.11|Bace1|ENSMUSG00000032086.13|beta-site APP cleaving enzyme 1	ENSMUST00000034591.11|Bace1|ENSMUSG00000032086.13|beta-site APP cleaving enzyme 1
mm39_v1_chr10_-_118705029_118705091	0.04357214386796149	CAGUCCA	ENSMUST00000004281.10|Dyrk2|ENSMUSG00000028630.10|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm39_v1_chr8_+_129412135_129412263	0.04284750178059364	CAGUCCA	ENSMUST00000090006.12|Itgb1|ENSMUSG00000025809.16|integrin beta 1 (fibronectin receptor beta)
mm39_v1_chr3_+_37694094_37694229	0.042698532444378094	CAGUCCA	ENSMUST00000108109.8|Spry1|ENSMUSG00000037211.13|sprouty RTK signaling antagonist 1	ENSMUST00000038569.8|Spry1|ENSMUSG00000037211.13|sprouty RTK signaling antagonist 1	ENSMUST00000108107.2|Spry1|ENSMUSG00000037211.13|sprouty RTK signaling antagonist 1
mm39_v1_chr4_-_132237804_132237820	0.0417979957468499	CAGUCCA	ENSMUST00000030724.9|Sesn2|ENSMUSG00000028893.9|sestrin 2
mm39_v1_chr1_+_52669849_52669916	0.04111425227290686	CAGUCCA	ENSMUST00000165859.8|Nemp2|ENSMUSG00000043015.16|nuclear envelope integral membrane protein 2
mm39_v1_chr9_-_59393893_59393919	0.03884391618702662	CAGUCCA	ENSMUST00000171975.8|Arih1|ENSMUSG00000025234.12|ariadne RBR E3 ubiquitin protein ligase 1
mm39_v1_chr2_-_152239966_152239997	0.03789133268520737	CAGUCCA	ENSMUST00000063332.9|Sox12|ENSMUSG00000051817.9|SRY (sex determining region Y)-box 12	ENSMUST00000182625.2|Sox12|ENSMUSG00000051817.9|SRY (sex determining region Y)-box 12
mm39_v1_chr12_-_108241392_108241476	0.03772198554193737	CAGUCCA	ENSMUST00000136175.3|Ccdc85c|ENSMUSG00000084883.3|coiled-coil domain containing 85C
mm39_v1_chrX_-_7940959_7940999	0.03704222546325257	CAGUCCA	ENSMUST00000115636.4|Suv39h1|ENSMUSG00000039231.19|suppressor of variegation 3-9 1	ENSMUST00000115638.10|Suv39h1|ENSMUSG00000039231.19|suppressor of variegation 3-9 1
mm39_v1_chr8_+_112667328_112667341	0.036473314363551876	CAGUCCA	ENSMUST00000034428.8|Gabarapl2|ENSMUSG00000031950.8|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2
mm39_v1_chr6_-_114898739_114898798	0.03608094161230455	CAGUCCA	ENSMUST00000032459.14|Vgll4|ENSMUSG00000030315.16|vestigial like family member 4
mm39_v1_chr16_+_20367327_20367426	0.034970796846677143	CAGUCCA	ENSMUST00000003319.6|Abcf3|ENSMUSG00000003234.17|ATP-binding cassette, sub-family F (GCN20), member 3	ENSMUST00000232680.2|Abcf3|ENSMUSG00000003234.17|ATP-binding cassette, sub-family F (GCN20), member 3	ENSMUST00000232490.2|Abcf3|ENSMUSG00000003234.17|ATP-binding cassette, sub-family F (GCN20), member 3
mm39_v1_chr12_-_83643964_83644020	0.03406143676057373	CAGUCCA	ENSMUST00000048319.6|Zfyve1|ENSMUSG00000042628.9|zinc finger, FYVE domain containing 1
mm39_v1_chr10_+_92996686_92996756	0.03270854513691715	CAGUCCA	ENSMUST00000069965.9|Cdk17|ENSMUSG00000020015.11|cyclin-dependent kinase 17
mm39_v1_chr11_-_86648309_86648399	0.03252990409715225	CAGUCCA	ENSMUST00000060766.16|Cltc|ENSMUSG00000047126.18|clathrin, heavy polypeptide (Hc)	ENSMUST00000103186.11|Cltc|ENSMUSG00000047126.18|clathrin, heavy polypeptide (Hc)
mm39_v1_chr2_+_74656145_74656223	0.031743734794606196	CAGUCCA	ENSMUST00000028511.8|Mtx2|ENSMUSG00000027099.10|metaxin 2
mm39_v1_chr16_-_31898088_31898178	0.031675218089132214	CAGUCCA	ENSMUST00000023467.9|Pak2|ENSMUSG00000022781.9|p21 (RAC1) activated kinase 2
mm39_v1_chr12_+_8724129_8724150	0.03014866325925872	CAGUCCA	ENSMUST00000111123.9|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2	ENSMUST00000178015.8|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2	ENSMUST00000020915.10|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2
mm39_v1_chr10_+_36850532_36850575	0.029177301665242197	CAGUCCA	ENSMUST00000019911.14|Hdac2|ENSMUSG00000019777.17|histone deacetylase 2	ENSMUST00000105510.2|Hdac2|ENSMUSG00000019777.17|histone deacetylase 2
mm39_v1_chr18_-_14815807_14815971	0.028529289402695092	CAGUCCA	ENSMUST00000040964.13|Ss18|ENSMUSG00000037013.18|SS18, nBAF chromatin remodeling complex subunit	ENSMUST00000234524.2|Ss18|ENSMUSG00000037013.18|SS18, nBAF chromatin remodeling complex subunit	ENSMUST00000092041.11|Ss18|ENSMUSG00000037013.18|SS18, nBAF chromatin remodeling complex subunit	ENSMUST00000040924.9|Ss18|ENSMUSG00000037013.18|SS18, nBAF chromatin remodeling complex subunit
mm39_v1_chr4_-_133329479_133329479	0.027529096468036616	CAGUCCA	ENSMUST00000057311.4|Sfn|ENSMUSG00000047281.4|stratifin
mm39_v1_chr4_+_46450892_46450903	0.025940195490350038	CAGUCCA	ENSMUST00000102926.5|Anp32b|ENSMUSG00000028333.11|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B
mm39_v1_chr13_+_55612050_55612132	0.0258039234986166	CAGUCCA	ENSMUST00000046533.9|Prr7|ENSMUSG00000034686.9|proline rich 7 (synaptic)
mm39_v1_chr18_+_76374651_76374804	0.025440634926110157	CAGUCCA	ENSMUST00000168423.9|Smad2|ENSMUSG00000024563.17|SMAD family member 2	ENSMUST00000091831.13|Smad2|ENSMUSG00000024563.17|SMAD family member 2
mm39_v1_chr11_+_43572825_43572918	0.024540775254443613	CAGUCCA	ENSMUST00000061070.6|Pwwp2a|ENSMUSG00000044950.8|PWWP domain containing 2A	ENSMUST00000094294.5|Pwwp2a|ENSMUSG00000044950.8|PWWP domain containing 2A
mm39_v1_chr9_+_32027335_32027432	0.023467052543280603	CAGUCCA	ENSMUST00000174641.8|Arhgap32|ENSMUSG00000041444.15|Rho GTPase activating protein 32
mm39_v1_chr4_+_125997734_125997784	0.023210859554101723	CAGUCCA	ENSMUST00000116286.9|Stk40|ENSMUSG00000042608.16|serine/threonine kinase 40	ENSMUST00000094761.11|Stk40|ENSMUSG00000042608.16|serine/threonine kinase 40
mm39_v1_chr10_+_111000613_111000627	0.022622261061518614	CAGUCCA	ENSMUST00000105275.9|Osbpl8|ENSMUSG00000020189.16|oxysterol binding protein-like 8
mm39_v1_chr9_+_35332837_35332913	0.022579776893768506	CAGUCCA	ENSMUST00000119129.10|Cdon|ENSMUSG00000038119.16|cell adhesion molecule-related/down-regulated by oncogenes
mm39_v1_chr14_-_67309866_67309925	0.021640846064064318	CAGUCCA	ENSMUST00000225380.2|Ppp2r2a|ENSMUSG00000022052.10|protein phosphatase 2, regulatory subunit B, alpha	ENSMUST00000089230.7|Ppp2r2a|ENSMUSG00000022052.10|protein phosphatase 2, regulatory subunit B, alpha
mm39_v1_chr4_-_126427234_126427272	0.02134549083514948	CAGUCCA	ENSMUST00000084289.5|Ago4|ENSMUSG00000042500.12|argonaute RISC catalytic subunit 4
mm39_v1_chr14_-_55959633_55959668	0.020430162675697704	CAGUCCA	ENSMUST00000169237.8|Rabggta|ENSMUSG00000040472.16|Rab geranylgeranyl transferase, a subunit	ENSMUST00000062861.15|Rabggta|ENSMUSG00000040472.16|Rab geranylgeranyl transferase, a subunit	ENSMUST00000227061.2|Rabggta|ENSMUSG00000040472.16|Rab geranylgeranyl transferase, a subunit
mm39_v1_chr4_-_129083335_129083387	0.01972222379298414	CAGUCCA	ENSMUST00000106061.9|S100pbp|ENSMUSG00000040928.16|S100P binding protein	ENSMUST00000072431.13|S100pbp|ENSMUSG00000040928.16|S100P binding protein
mm39_v1_chr8_+_70275079_70275243	0.019638975947842786	CAGUCCA	ENSMUST00000164890.8|Lpar2|ENSMUSG00000031861.17|lysophosphatidic acid receptor 2	ENSMUST00000034325.6|Lpar2|ENSMUSG00000031861.17|lysophosphatidic acid receptor 2	ENSMUST00000238452.2|Lpar2|ENSMUSG00000031861.17|lysophosphatidic acid receptor 2
mm39_v1_chr10_+_115854118_115854328	0.019462281443271105	CAGUCCA	ENSMUST00000063470.11|Ptprr|ENSMUSG00000020151.17|protein tyrosine phosphatase, receptor type, R
mm39_v1_chr10_+_69369590_69369603	0.017460103059057902	CAGUCCA	ENSMUST00000182884.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial
mm39_v1_chrX_-_36253309_36253357	0.016577560933573276	CAGUCCA	ENSMUST00000060474.14|Septin6|ENSMUSG00000050379.16|septin 6	ENSMUST00000053456.11|Septin6|ENSMUSG00000050379.16|septin 6	ENSMUST00000115239.10|Septin6|ENSMUSG00000050379.16|septin 6
mm39_v1_chr2_-_84508385_84508462	0.016083185657390225	CAGUCCA	ENSMUST00000189772.2|Gm28635|ENSMUSG00000101645.2|predicted gene 28635	ENSMUST00000053664.9|Tmx2|ENSMUSG00000050043.17|thioredoxin-related transmembrane protein 2	ENSMUST00000111664.8|Tmx2|ENSMUSG00000050043.17|thioredoxin-related transmembrane protein 2
mm39_v1_chr1_+_20960819_20960841	0.01598344454384535	CAGUCCA	ENSMUST00000189400.7|Paqr8|ENSMUSG00000025931.16|progestin and adipoQ receptor family member VIII
mm39_v1_chr2_+_57127665_57127741	0.015973011941263198	CAGUCCA	ENSMUST00000169687.8|Gpd2|ENSMUSG00000026827.13|glycerol phosphate dehydrogenase 2, mitochondrial
mm39_v1_chr4_+_54947976_54948054	0.015716239212285786	CAGUCCA	ENSMUST00000098070.10|Zfp462|ENSMUSG00000060206.12|zinc finger protein 462
mm39_v1_chr11_-_11987391_11987407	0.011860650610590523	CAGUCCA	ENSMUST00000093321.12|Grb10|ENSMUSG00000020176.18|growth factor receptor bound protein 10
mm39_v1_chr14_-_61677258_61677323	0.011819035399860182	CAGUCCA	ENSMUST00000022496.9|Kpna3|ENSMUSG00000021929.10|karyopherin (importin) alpha 3
mm39_v1_chr15_+_102058936_102059012	0.011137129446854617	CAGUCCA	ENSMUST00000023806.14|Soat2|ENSMUSG00000023045.14|sterol O-acyltransferase 2
mm39_v1_chr4_+_129030710_129030792	0.011063325562985126	CAGUCCA	ENSMUST00000102600.4|Fndc5|ENSMUSG00000001334.10|fibronectin type III domain containing 5
mm39_v1_chr3_-_122413361_122413372	0.011047177270096372	CAGUCCA	ENSMUST00000239148.2|Fnbp1l|ENSMUSG00000039735.17|formin binding protein 1-like	ENSMUST00000162409.8|Fnbp1l|ENSMUSG00000039735.17|formin binding protein 1-like	ENSMUST00000162947.3|Fnbp1l|ENSMUSG00000039735.17|formin binding protein 1-like
mm39_v1_chr4_+_138181616_138181643	0.008134451123908126	CAGUCCA	ENSMUST00000050918.4|Camk2n1|ENSMUSG00000046447.4|calcium/calmodulin-dependent protein kinase II inhibitor 1
mm39_v1_chr3_-_97134680_97134738	0.007717143120708115	CAGUCCA	ENSMUST00000046521.14|Bcl9|ENSMUSG00000038256.16|B cell CLL/lymphoma 9
mm39_v1_chr14_-_8457069_8457272	0.007388817680196659	CAGUCCA	ENSMUST00000022257.4|Atxn7|ENSMUSG00000021738.6|ataxin 7
mm39_v1_chr6_+_134012602_134012683	0.007244568185148966	CAGUCCA	ENSMUST00000081028.13|Etv6|ENSMUSG00000030199.17|ets variant 6	ENSMUST00000111963.8|Etv6|ENSMUSG00000030199.17|ets variant 6
mm39_v1_chr7_-_115637970_115637985	0.006905646834215793	CAGUCCA	ENSMUST00000166877.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr9_+_104446682_104446825	0.0067990340274437285	CAGUCCA	ENSMUST00000057742.15|Cpne4|ENSMUSG00000032564.17|copine IV
mm39_v1_chrX_-_87159237_87159281	0.006602864871156596	CAGUCCA	ENSMUST00000113966.8|Il1rapl1|ENSMUSG00000052372.11|interleukin 1 receptor accessory protein-like 1	ENSMUST00000113964.2|Il1rapl1|ENSMUSG00000052372.11|interleukin 1 receptor accessory protein-like 1
mm39_v1_chr19_-_30152814_30152866	0.005323819236011986	CAGUCCA	ENSMUST00000025778.9|Gldc|ENSMUSG00000024827.11|glycine decarboxylase
mm39_v1_chr3_-_154036180_154036296	0.0049015097171337795	CAGUCCA	ENSMUST00000177846.8|Lhx8|ENSMUSG00000096225.8|LIM homeobox protein 8
mm39_v1_chr17_-_91400499_91400504	0.004252234241589331	CAGUCCA	ENSMUST00000160844.10|Nrxn1|ENSMUSG00000024109.19|neurexin I
mm39_v1_chr8_+_106075475_106075475	0.004068517727874876	CAGUCCA	ENSMUST00000073149.7|Slc9a5|ENSMUSG00000014786.9|solute carrier family 9 (sodium/hydrogen exchanger), member 5
mm39_v1_chr8_-_91074971_91075014	0.003607382992309556	CAGUCCA	ENSMUST00000109621.10|Tox3|ENSMUSG00000043668.14|TOX high mobility group box family member 3
mm39_v1_chr9_-_43017249_43017322	0.0031211547832501784	CAGUCCA	ENSMUST00000165665.9|Arhgef12|ENSMUSG00000059495.15|Rho guanine nucleotide exchange factor (GEF) 12
mm39_v1_chr2_+_52747855_52747880	0.0025370496294330512	CAGUCCA	ENSMUST00000155586.9|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000090952.11|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000127122.9|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000049483.14|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000050719.13|Fmnl2|ENSMUSG00000036053.18|formin-like 2
mm39_v1_chr3_-_110050312_110050326	0.002483606857939719	CAGUCCA	ENSMUST00000156177.9|Ntng1|ENSMUSG00000059857.16|netrin G1
mm39_v1_chr6_-_59403264_59403330	0.0019285662611484048	CAGUCCA	ENSMUST00000051065.6|Gprin3|ENSMUSG00000045441.6|GPRIN family member 3
mm39_v1_chr6_+_14901343_14901363	0.001811792995242336	CAGUCCA	ENSMUST00000115477.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr2_+_151923449_151923544	0.0017986243273907878	CAGUCCA	ENSMUST00000064061.4|Scrt2|ENSMUSG00000060257.3|scratch family zinc finger 2
mm39_v1_chr4_+_140875222_140875282	0.0014443769008732925	CAGUCCA	ENSMUST00000030757.10|Fbxo42|ENSMUSG00000028920.10|F-box protein 42
mm39_v1_chr13_-_55979191_55979238	0.0010350284454951526	CAGUCCA	ENSMUST00000021968.7|Pitx1|ENSMUSG00000021506.8|paired-like homeodomain transcription factor 1
mm39_v1_chr15_-_73056713_73056822	0.0008972554281738459	CAGUCCA	ENSMUST00000044113.12|Ago2|ENSMUSG00000036698.12|argonaute RISC catalytic subunit 2
mm39_v1_chrX_+_92330102_92330128	0.0008175330157225192	CAGUCCA	ENSMUST00000046565.13|Arx|ENSMUSG00000035277.16|aristaless related homeobox	ENSMUST00000113947.6|Arx|ENSMUSG00000035277.16|aristaless related homeobox
mm39_v1_chr12_+_4819277_4819337	0.0006229069879421445	CAGUCCA	ENSMUST00000020967.11|Pfn4|ENSMUSG00000020639.15|profilin family, member 4
mm39_v1_chr8_+_84334805_84334827	0.0003799821819800734	CAGUCCA	ENSMUST00000005620.10|Dnajb1|ENSMUSG00000005483.11|DnaJ heat shock protein family (Hsp40) member B1
mm39_v1_chr4_+_13743424_13743478	0.00017550821979611734	CAGUCCA	ENSMUST00000006761.10|Runx1t1|ENSMUSG00000006586.16|RUNX1 translocation partner 1
